Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236030 | KEH18552.1 | 98.585 | 212 | 3 | 0 | 1 | 212 | 46 | 257 | 3.42e-155 | 440 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236030 | sp|Q93V56|IPYR1_ARATH | 87.736 | 212 | 26 | 0 | 1 | 212 | 1 | 212 | 2.16e-139 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236030 | A0A072TMB0 | 98.585 | 212 | 3 | 0 | 1 | 212 | 46 | 257 | 1.63e-155 | 440 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657260 | Msa1236030 | 0.800584 | 1.346005e-48 | -8.615850e-47 |
| Msa0171740 | Msa1236030 | 0.803643 | 3.160888e-49 | -8.615850e-47 |
| Msa1235780 | Msa1236030 | 0.914440 | 1.911859e-84 | -8.615850e-47 |
| Msa1236030 | Msa1262320 | 0.825685 | 4.095700e-54 | -8.615850e-47 |
| Msa0389840 | Msa1236030 | 0.905440 | 4.284102e-80 | -8.615850e-47 |
| Msa1175600 | Msa1236030 | 0.814375 | 1.591072e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236030 | MtrunA17_Chr8g0345781 | 98.585 | 212 | 3 | 0 | 1 | 212 | 6 | 217 | 6.94e-159 | 437 |
| Msa1236030 | MtrunA17_Chr5g0404551 | 78.673 | 211 | 45 | 0 | 2 | 212 | 3 | 213 | 2.87e-128 | 360 |
| Msa1236030 | MtrunA17_Chr1g0182331 | 84.772 | 197 | 30 | 0 | 16 | 212 | 20 | 216 | 1.78e-127 | 358 |
| Msa1236030 | MtrunA17_Chr8g0372981 | 80.788 | 203 | 38 | 1 | 11 | 212 | 24 | 226 | 9.86e-123 | 346 |
| Msa1236030 | MtrunA17_Chr7g0276441 | 93.333 | 165 | 11 | 0 | 48 | 212 | 29 | 193 | 2.47e-114 | 324 |
| Msa1236030 | MtrunA17_Chr1g0200691 | 67.241 | 232 | 36 | 2 | 8 | 199 | 54 | 285 | 7.25e-109 | 313 |
| Msa1236030 | MtrunA17_Chr2g0280151 | 33.742 | 163 | 81 | 6 | 35 | 173 | 82 | 241 | 2.43e-16 | 75.9 |
| Msa1236030 | MtrunA17_Chr1g0210921 | 63.462 | 52 | 17 | 1 | 131 | 180 | 12 | 63 | 4.65e-16 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1236030 | AT1G01050.1 | 87.736 | 212 | 26 | 0 | 1 | 212 | 1 | 212 | 2.20e-140 | 391 |
| Msa1236030 | AT1G01050.2 | 87.736 | 212 | 26 | 0 | 1 | 212 | 1 | 212 | 2.20e-140 | 391 |
| Msa1236030 | AT2G46860.1 | 86.111 | 216 | 26 | 1 | 1 | 212 | 1 | 216 | 2.71e-138 | 386 |
| Msa1236030 | AT4G01480.1 | 88.442 | 199 | 23 | 0 | 14 | 212 | 18 | 216 | 1.16e-133 | 374 |
| Msa1236030 | AT4G01480.2 | 88.442 | 199 | 23 | 0 | 14 | 212 | 18 | 216 | 1.16e-133 | 374 |
| Msa1236030 | AT3G53620.1 | 81.863 | 204 | 37 | 0 | 9 | 212 | 13 | 216 | 4.40e-127 | 357 |
| Msa1236030 | AT2G18230.1 | 76.382 | 199 | 47 | 0 | 14 | 212 | 20 | 218 | 3.52e-115 | 327 |
| Msa1236030 | AT5G09650.1 | 32.124 | 193 | 107 | 6 | 8 | 178 | 66 | 256 | 4.24e-18 | 81.3 |
Find 58 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTACACAATTGAAAATATT+TGG | 0.130753 | 8_2:+14462527 | None:intergenic |
| TATATATTTCATGTAAAATT+TGG | 0.168389 | 8_2:-14460705 | Msa1236030:three_prime_UTR |
| ATATTAATGCCACAAGATTT+TGG | 0.198248 | 8_2:+14460642 | None:intergenic |
| CCTTGGCATGATCTTGAAAT+TGG | 0.231220 | 8_2:-14462678 | Msa1236030:intron |
| GTTAACAAATCAGAAATATA+AGG | 0.249573 | 8_2:+14460664 | None:intergenic |
| TGGCAGGAGCCTGTTCTTCC+TGG | 0.300485 | 8_2:-14461970 | Msa1236030:intron |
| AAAGAATTCTTTCATTCAAA+CGG | 0.380614 | 8_2:+14462733 | None:intergenic |
| AAGAATTCTTTCATTCAAAC+GGG | 0.388175 | 8_2:+14462734 | None:intergenic |
| CGCGGTATGCGCTGATGATC+CGG | 0.389151 | 8_2:-14461785 | Msa1236030:CDS |
| GTTGTTTATCCTCATAACTA+TGG | 0.399405 | 8_2:-14462231 | Msa1236030:CDS |
| TTAACAAATCAGAAATATAA+GGG | 0.404778 | 8_2:+14460665 | None:intergenic |
| CATTCAAACGGGGAGTTGGG+CGG | 0.410809 | 8_2:+14462745 | None:intergenic |
| CTTTCATTCAAACGGGGAGT+TGG | 0.415515 | 8_2:+14462741 | None:intergenic |
| TTTCATTCAAACGGGGAGTT+GGG | 0.421103 | 8_2:+14462742 | None:intergenic |
| ACTTCAACCTCATCGCCTAA+TGG | 0.427291 | 8_2:-14461734 | Msa1236030:CDS |
| ATTCAAACGGGGAGTTGGGC+GGG | 0.431213 | 8_2:+14462746 | None:intergenic |
| AGAAATACCTGATCAATCAT+AGG | 0.434889 | 8_2:+14461913 | None:intergenic |
| AGGAAACAACCAGGAAGAAC+AGG | 0.458021 | 8_2:+14461961 | None:intergenic |
| CGATGTCTTGGTTCTCATGC+AGG | 0.463888 | 8_2:-14462169 | Msa1236030:intron |
| ATATTGAGAAAAGGTGTAAA+GGG | 0.464766 | 8_2:+14463733 | None:intergenic |
| CTTCCAATGTTCAGGTTGAT+CGG | 0.464863 | 8_2:-14462269 | Msa1236030:intron |
| AGAAGCGTTTAATCTCCATT+AGG | 0.470540 | 8_2:+14461719 | None:intergenic |
| CAATGATCCACTCGATGTCT+TGG | 0.475275 | 8_2:-14462181 | Msa1236030:CDS |
| AATATTGAGAAAAGGTGTAA+AGG | 0.483210 | 8_2:+14463732 | None:intergenic |
| AAACCTTGAATAACACCAAA+AGG | 0.485269 | 8_2:+14463708 | None:intergenic |
| ATGGCATCAACAGCAGTAGA+TGG | 0.493770 | 8_2:+14461138 | None:intergenic |
| ACTAATGCCTATGATTGATC+AGG | 0.499567 | 8_2:-14461920 | Msa1236030:intron |
| TTCCTGCGAGCAAGAGCCAT+TGG | 0.508042 | 8_2:-14461943 | Msa1236030:CDS |
| GATCAGTTGCGGCTCACCCT+TGG | 0.512919 | 8_2:-14462695 | Msa1236030:CDS |
| AGAGATCACTAAGGGAAGTA+AGG | 0.518040 | 8_2:-14462403 | Msa1236030:CDS |
| CAAAAGGAAATATTGAGAAA+AGG | 0.521969 | 8_2:+14463724 | None:intergenic |
| TTGTCTTCACATAGAGTTCG+AGG | 0.526790 | 8_2:+14462201 | None:intergenic |
| GTCCAATGGCTCTTGCTCGC+AGG | 0.526935 | 8_2:+14461941 | None:intergenic |
| GGGATAAAACCATAGTTATG+AGG | 0.531057 | 8_2:+14462222 | None:intergenic |
| ATTTGTTAACCAAAATCTTG+TGG | 0.546058 | 8_2:-14460651 | Msa1236030:three_prime_UTR |
| TGTATACTTACATTGAGTGT+TGG | 0.546581 | 8_2:+14461115 | None:intergenic |
| GAATTCTTTCATCTTTGTCA+AGG | 0.554674 | 8_2:-14462719 | Msa1236030:CDS |
| TCAGTATAGTGCTTATACTC+CGG | 0.562072 | 8_2:+14461766 | None:intergenic |
| TTGAAAATATTTGGTGCACC+AGG | 0.585149 | 8_2:+14462536 | None:intergenic |
| GCAGGTTGTAGAGATCACTA+AGG | 0.587594 | 8_2:-14462412 | Msa1236030:intron |
| AATCATAGGCATTAGTCCAA+TGG | 0.593270 | 8_2:+14461927 | None:intergenic |
| AGACAAGAAGAATGAGAACA+AGG | 0.595962 | 8_2:-14461187 | Msa1236030:CDS |
| TATTCTTGTCTATCTCCTCA+AGG | 0.602254 | 8_2:+14460867 | None:intergenic |
| CCAATTTCAAGATCATGCCA+AGG | 0.603400 | 8_2:+14462678 | None:intergenic |
| CTTGCTCGCAGGAAACAACC+AGG | 0.608952 | 8_2:+14461952 | None:intergenic |
| TGTCTTCACATAGAGTTCGA+GGG | 0.623793 | 8_2:+14462202 | None:intergenic |
| TACTTACATTGAGTGTTGGA+TGG | 0.629275 | 8_2:+14461119 | None:intergenic |
| TTAATCTCCATTAGGCGATG+AGG | 0.630602 | 8_2:+14461727 | None:intergenic |
| CAGGTTGTAGAGATCACTAA+GGG | 0.630832 | 8_2:-14462411 | Msa1236030:CDS |
| TAACAAATCAGAAATATAAG+GGG | 0.638800 | 8_2:+14460666 | None:intergenic |
| AGTATATTCTGCATACCTTG+AGG | 0.641114 | 8_2:-14460882 | Msa1236030:CDS |
| CAATTTCAAGATCATGCCAA+GGG | 0.655845 | 8_2:+14462679 | None:intergenic |
| ATGAGAACCAAGACATCGAG+TGG | 0.661639 | 8_2:+14462174 | None:intergenic |
| AGAATTCTTTCATTCAAACG+GGG | 0.661736 | 8_2:+14462735 | None:intergenic |
| TTTGTCAAGGAGATCAGTTG+CGG | 0.673037 | 8_2:-14462706 | Msa1236030:CDS |
| GCATCAACAGCAGTAGATGG+TGG | 0.675653 | 8_2:+14461141 | None:intergenic |
| CAAGAAGAATGAGAACAAGG+AGG | 0.714358 | 8_2:-14461184 | Msa1236030:CDS |
| GAAGGATGATAAAATCATCG+CGG | 0.762714 | 8_2:-14461803 | Msa1236030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATGGTATATAATATTTT+TGG | + | chr8_2:14463361-14463380 | None:intergenic | 10.0% |
| !! | TATATATTTCATGTAAAATT+TGG | - | chr8_2:14463664-14463683 | Msa1236030:intron | 10.0% |
| !!! | CTTTTTCAATTTTATTCTAT+TGG | - | chr8_2:14460797-14460816 | Msa1236030:three_prime_UTR | 15.0% |
| !! | TAATCAAACTTGATTATTAT+TGG | + | chr8_2:14460936-14460955 | None:intergenic | 15.0% |
| !!! | GAATTTGAAATATAATCATA+AGG | - | chr8_2:14461040-14461059 | Msa1236030:intron | 15.0% |
| !! | TGTTATGATTAAAGTTTAAT+AGG | + | chr8_2:14462254-14462273 | None:intergenic | 15.0% |
| !!! | TGTATTTTTTTGTATTAAGT+TGG | - | chr8_2:14463593-14463612 | Msa1236030:intron | 15.0% |
| !!! | CTATACCATTTATTTTTAAT+TGG | - | chr8_2:14463619-14463638 | Msa1236030:intron | 15.0% |
| !! | TTAACAAATCAGAAATATAA+GGG | + | chr8_2:14463707-14463726 | None:intergenic | 15.0% |
| !! | GGTAAAATTAACTATATGAT+TGG | + | chr8_2:14460703-14460722 | None:intergenic | 20.0% |
| !!! | CATATAGTTAATTTTACCTT+TGG | - | chr8_2:14460705-14460724 | Msa1236030:three_prime_UTR | 20.0% |
| !! | ATTATACAATGGTTAATCAA+TGG | + | chr8_2:14460833-14460852 | None:intergenic | 20.0% |
| !! | ATATTATTACCACATATCAA+AGG | + | chr8_2:14460896-14460915 | None:intergenic | 20.0% |
| !! | GATATGTGGTAATAATATAA+AGG | - | chr8_2:14460898-14460917 | Msa1236030:CDS | 20.0% |
| !!! | TTAAACCAATTTTACTCTTA+TGG | - | chr8_2:14461508-14461527 | Msa1236030:intron | 20.0% |
| !!! | AACATTTGATCTTAATTTTG+TGG | - | chr8_2:14461541-14461560 | Msa1236030:intron | 20.0% |
| !! | AAAGAATTCTTTCATTCAAA+CGG | + | chr8_2:14461639-14461658 | None:intergenic | 20.0% |
| !! | CTTACACAATTGAAAATATT+TGG | + | chr8_2:14461845-14461864 | None:intergenic | 20.0% |
| !!! | ATAAATGAAGATCAAAGTTT+TGG | + | chr8_2:14461869-14461888 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGAAATTCGAAA+TGG | - | chr8_2:14462042-14462061 | Msa1236030:intron | 20.0% |
| !! | TTTAATCATAACAATAGTTC+CGG | - | chr8_2:14462261-14462280 | Msa1236030:intron | 20.0% |
| !! | AACATTCTGAATTACTTATA+TGG | - | chr8_2:14462379-14462398 | Msa1236030:CDS | 20.0% |
| !! | TTGTTAACATGAGATAATAA+AGG | + | chr8_2:14462689-14462708 | None:intergenic | 20.0% |
| !!! | CTTATTTTCCTAAAATATAC+AGG | - | chr8_2:14462970-14462989 | Msa1236030:intron | 20.0% |
| !!! | AGAAACACTAATTTTTCAAA+AGG | + | chr8_2:14463149-14463168 | None:intergenic | 20.0% |
| !!! | ACATTAAGCATATTTGTTAA+TGG | + | chr8_2:14463377-14463396 | None:intergenic | 20.0% |
| !! | AGAGACAAAATATCATATTA+AGG | + | chr8_2:14463441-14463460 | None:intergenic | 20.0% |
| !!! | AGACAATTTTTGAATGTATT+TGG | - | chr8_2:14463558-14463577 | Msa1236030:intron | 20.0% |
| !!! | AATTTTTGAATGTATTTGGA+TGG | - | chr8_2:14463562-14463581 | Msa1236030:intron | 20.0% |
| !! | GTTCTCCAATTAAAAATAAA+TGG | + | chr8_2:14463627-14463646 | None:intergenic | 20.0% |
| !! | TAACAAATCAGAAATATAAG+GGG | + | chr8_2:14463706-14463725 | None:intergenic | 20.0% |
| !! | GTTAACAAATCAGAAATATA+AGG | + | chr8_2:14463708-14463727 | None:intergenic | 20.0% |
| !! | ATATTGAGAAAAGGTGTAAA+GGG | + | chr8_2:14460639-14460658 | None:intergenic | 25.0% |
| !! | AATATTGAGAAAAGGTGTAA+AGG | + | chr8_2:14460640-14460659 | None:intergenic | 25.0% |
| ! | CAAAAGGAAATATTGAGAAA+AGG | + | chr8_2:14460648-14460667 | None:intergenic | 25.0% |
| !! | CTTTTCTCAATATTTCCTTT+TGG | - | chr8_2:14460646-14460665 | Msa1236030:three_prime_UTR | 25.0% |
| !! | GTTAATTTTACCTTTGGTAT+TGG | - | chr8_2:14460711-14460730 | Msa1236030:three_prime_UTR | 25.0% |
| ! | ATACATAAATCCAATACCAA+AGG | + | chr8_2:14460724-14460743 | None:intergenic | 25.0% |
| ! | AGAACTATGTCATTATACAA+TGG | + | chr8_2:14460844-14460863 | None:intergenic | 25.0% |
| ! | TATCAAAGGAATCACAAAAA+TGG | + | chr8_2:14460882-14460901 | None:intergenic | 25.0% |
| !! | GACTTTTGATGTATAAAGAT+TGG | - | chr8_2:14460976-14460995 | Msa1236030:intron | 25.0% |
| ! | GTAAAAATATAGTCAAGTGT+TGG | - | chr8_2:14461018-14461037 | Msa1236030:intron | 25.0% |
| ! | TTGAATGAAGCAAATTCATT+TGG | - | chr8_2:14461080-14461099 | Msa1236030:intron | 25.0% |
| !! | TGGTGATATATTGACTAATA+AGG | - | chr8_2:14461100-14461119 | Msa1236030:intron | 25.0% |
| !! | GGTGATATATTGACTAATAA+GGG | - | chr8_2:14461101-14461120 | Msa1236030:intron | 25.0% |
| ! | ATGATTATGATCCAATATCT+AGG | + | chr8_2:14461146-14461165 | None:intergenic | 25.0% |
| !!! | CAATGTTTTAAAAACCGAAT+CGG | - | chr8_2:14461174-14461193 | Msa1236030:CDS | 25.0% |
| ! | AAGAATTCTTTCATTCAAAC+GGG | + | chr8_2:14461638-14461657 | None:intergenic | 25.0% |
| !! | TGATCTTAATTTTCATGTGA+AGG | - | chr8_2:14461809-14461828 | Msa1236030:CDS | 25.0% |
| !!! | GGAAAATGTTAAGTATTGAA+GGG | + | chr8_2:14461892-14461911 | None:intergenic | 25.0% |
| !!! | TGGAAAATGTTAAGTATTGA+AGG | + | chr8_2:14461893-14461912 | None:intergenic | 25.0% |
| ! | CAAAAAGACTGGATTAATTA+AGG | - | chr8_2:14462005-14462024 | Msa1236030:intron | 25.0% |
| ! | TAACTATTCAGAAAAAAGCA+TGG | + | chr8_2:14462307-14462326 | None:intergenic | 25.0% |
| !! | TTGTTTGTTAAGTAAACTAG+AGG | + | chr8_2:14462520-14462539 | None:intergenic | 25.0% |
| ! | AATAAGCTTAAAACAGCTTA+TGG | + | chr8_2:14462956-14462975 | None:intergenic | 25.0% |
| !! | TAAGCTATCCTGTATATTTT+AGG | + | chr8_2:14462981-14463000 | None:intergenic | 25.0% |
| ! | GTGAAAGAATTTATCATCTA+TGG | - | chr8_2:14463335-14463354 | Msa1236030:intron | 25.0% |
| !! | ATGATATTTTGTCTCTGATT+TGG | - | chr8_2:14463445-14463464 | Msa1236030:intron | 25.0% |
| !! | ATTTGTTAACCAAAATCTTG+TGG | - | chr8_2:14463718-14463737 | Msa1236030:five_prime_UTR | 25.0% |
| !! | ATATTAATGCCACAAGATTT+TGG | + | chr8_2:14463730-14463749 | None:intergenic | 25.0% |
| !!! | TTTCCTTTTGGTGTTATTCA+AGG | - | chr8_2:14460658-14460677 | Msa1236030:three_prime_UTR | 30.0% |
| AAACCTTGAATAACACCAAA+AGG | + | chr8_2:14460664-14460683 | None:intergenic | 30.0% | |
| TTTGTGATTCCTTTGATATG+TGG | - | chr8_2:14460884-14460903 | Msa1236030:CDS | 30.0% | |
| ! | TATTGACTAATAAGGGTCTT+TGG | - | chr8_2:14461108-14461127 | Msa1236030:intron | 30.0% |
| AACAAAACTGTAGACAATAC+CGG | + | chr8_2:14461222-14461241 | None:intergenic | 30.0% | |
| !!! | CTACAGTTTTGTTATTTGAG+TGG | - | chr8_2:14461229-14461248 | Msa1236030:intron | 30.0% |
| !!! | CGATTCGGTTTTTAAAACAT+TGG | - | chr8_2:14461329-14461348 | Msa1236030:intron | 30.0% |
| TGCATTTGTCCTAAATATCA+AGG | + | chr8_2:14461367-14461386 | None:intergenic | 30.0% | |
| !! | TAGTACATAGTTCTAAACTG+TGG | + | chr8_2:14461447-14461466 | None:intergenic | 30.0% |
| ! | ACAGTTTAGAACTATGTACT+AGG | - | chr8_2:14461446-14461465 | Msa1236030:intron | 30.0% |
| TGACTCCATAAGAGTAAAAT+TGG | + | chr8_2:14461516-14461535 | None:intergenic | 30.0% | |
| AGAATTCTTTCATTCAAACG+GGG | + | chr8_2:14461637-14461656 | None:intergenic | 30.0% | |
| GAATTCTTTCATCTTTGTCA+AGG | - | chr8_2:14461650-14461669 | Msa1236030:intron | 30.0% | |
| ATGCACAAATCAAGCTAAAT+AGG | + | chr8_2:14461746-14461765 | None:intergenic | 30.0% | |
| TATGAACTTGACAAAAAGAC+TGG | - | chr8_2:14461994-14462013 | Msa1236030:intron | 30.0% | |
| GTTGTTTATCCTCATAACTA+TGG | - | chr8_2:14462138-14462157 | Msa1236030:intron | 30.0% | |
| TTCTGAATTACTTATATGGC+AGG | - | chr8_2:14462383-14462402 | Msa1236030:CDS | 30.0% | |
| AGAAATACCTGATCAATCAT+AGG | + | chr8_2:14462459-14462478 | None:intergenic | 30.0% | |
| AGTTATTGTCATACTTACAC+AGG | - | chr8_2:14462539-14462558 | Msa1236030:CDS | 30.0% | |
| GTTATTGTCATACTTACACA+GGG | - | chr8_2:14462540-14462559 | Msa1236030:CDS | 30.0% | |
| TTATTGTCATACTTACACAG+GGG | - | chr8_2:14462541-14462560 | Msa1236030:CDS | 30.0% | |
| ATGTTGCATAACAAGATCAT+TGG | - | chr8_2:14462710-14462729 | Msa1236030:CDS | 30.0% | |
| ! | GGACATTTTATGAGTTGTTT+CGG | + | chr8_2:14462935-14462954 | None:intergenic | 30.0% |
| CAAAAGGACAAAGATATGTT+TGG | + | chr8_2:14463133-14463152 | None:intergenic | 30.0% | |
| TGTATACTTACATTGAGTGT+TGG | + | chr8_2:14463257-14463276 | None:intergenic | 30.0% | |
| TCGTATGAGTTTACCATCAT+AGG | - | chr8_2:14460760-14460779 | Msa1236030:three_prime_UTR | 35.0% | |
| CTAATAAGGGTCTTTGGATT+TGG | - | chr8_2:14461114-14461133 | Msa1236030:intron | 35.0% | |
| !!! | GTTTTAAAAACCGAATCGGA+CGG | - | chr8_2:14461178-14461197 | Msa1236030:CDS | 35.0% |
| TTATTTGAGTGGTTCAACTG+TGG | - | chr8_2:14461240-14461259 | Msa1236030:intron | 35.0% | |
| CACTGTGATCCTTGATATTT+AGG | - | chr8_2:14461355-14461374 | Msa1236030:intron | 35.0% | |
| TCTCCGAAATCTGTATATTG+CGG | - | chr8_2:14461420-14461439 | Msa1236030:intron | 35.0% | |
| CAATTTCAAGATCATGCCAA+GGG | + | chr8_2:14461693-14461712 | None:intergenic | 35.0% | |
| ! | TAATTTTCATGTGAAGGTCC+TGG | - | chr8_2:14461815-14461834 | Msa1236030:intron | 35.0% |
| !! | TTGAAAATATTTGGTGCACC+AGG | + | chr8_2:14461836-14461855 | None:intergenic | 35.0% |
| ! | AATGATTAGTTGCTACATGC+AGG | - | chr8_2:14461939-14461958 | Msa1236030:CDS | 35.0% |
| CTTTAATGCTTCCAATGTTC+AGG | - | chr8_2:14462092-14462111 | Msa1236030:intron | 35.0% | |
| GGGATAAAACCATAGTTATG+AGG | + | chr8_2:14462150-14462169 | None:intergenic | 35.0% | |
| AATCATAGGCATTAGTCCAA+TGG | + | chr8_2:14462445-14462464 | None:intergenic | 35.0% | |
| ACTAATGCCTATGATTGATC+AGG | - | chr8_2:14462449-14462468 | Msa1236030:intron | 35.0% | |
| TATTGTCATACTTACACAGG+GGG | - | chr8_2:14462542-14462561 | Msa1236030:intron | 35.0% | |
| GAAGGATGATAAAATCATCG+CGG | - | chr8_2:14462566-14462585 | Msa1236030:intron | 35.0% | |
| TCAGTATAGTGCTTATACTC+CGG | + | chr8_2:14462606-14462625 | None:intergenic | 35.0% | |
| !! | AGAAGCGTTTAATCTCCATT+AGG | + | chr8_2:14462653-14462672 | None:intergenic | 35.0% |
| ATAGGCACTTAATGTGTGTT+TGG | + | chr8_2:14462847-14462866 | None:intergenic | 35.0% | |
| ACACACATTAAGTGCCTATT+TGG | - | chr8_2:14462848-14462867 | Msa1236030:intron | 35.0% | |
| CCAAAAAAGTCGATCCAAAT+AGG | + | chr8_2:14462865-14462884 | None:intergenic | 35.0% | |
| !!! | CCTATTTGGATCGACTTTTT+TGG | - | chr8_2:14462862-14462881 | Msa1236030:intron | 35.0% |
| TAAGCATTTGTGAGACAGTT+TGG | - | chr8_2:14462900-14462919 | Msa1236030:intron | 35.0% | |
| AAGGACAAAGATATGTTTGG+AGG | + | chr8_2:14463130-14463149 | None:intergenic | 35.0% | |
| AGACAAGAAGAATGAGAACA+AGG | - | chr8_2:14463182-14463201 | Msa1236030:intron | 35.0% | |
| !! | TACTTACATTGAGTGTTGGA+TGG | + | chr8_2:14463253-14463272 | None:intergenic | 35.0% |
| !!! | TTTTGTCTCTGATTTGGTGT+AGG | - | chr8_2:14463451-14463470 | Msa1236030:intron | 35.0% |
| !! | TTTGTCTCTGATTTGGTGTA+GGG | - | chr8_2:14463452-14463471 | Msa1236030:intron | 35.0% |
| AGTATATTCTGCATACCTTG+AGG | - | chr8_2:14463487-14463506 | Msa1236030:intron | 35.0% | |
| TATTCTTGTCTATCTCCTCA+AGG | + | chr8_2:14463505-14463524 | None:intergenic | 35.0% | |
| CTTGCTAGTTCAACCTATGA+TGG | + | chr8_2:14460776-14460795 | None:intergenic | 40.0% | |
| ! | TTTGGACTAGGCCTAGATAT+TGG | - | chr8_2:14461132-14461151 | Msa1236030:CDS | 40.0% |
| !! | GTTCAAGTTGAACTGTGAAC+CGG | - | chr8_2:14461200-14461219 | Msa1236030:intron | 40.0% |
| GAACCATTCAAAACAGAACG+AGG | + | chr8_2:14461266-14461285 | None:intergenic | 40.0% | |
| CAAAGTAGTTGTACCATGAC+TGG | - | chr8_2:14461285-14461304 | Msa1236030:intron | 40.0% | |
| ! | AATCGAACGTCAAACTTGCT+AGG | + | chr8_2:14461314-14461333 | None:intergenic | 40.0% |
| AGCAAGTTTGACGTTCGATT+CGG | - | chr8_2:14461314-14461333 | Msa1236030:intron | 40.0% | |
| GACAAATGCAACTGCAATTG+TGG | - | chr8_2:14461377-14461396 | Msa1236030:intron | 40.0% | |
| GGTCCGCAATATACAGATTT+CGG | + | chr8_2:14461426-14461445 | None:intergenic | 40.0% | |
| TTTCATTCAAACGGGGAGTT+GGG | + | chr8_2:14461630-14461649 | None:intergenic | 40.0% | |
| TTTGTCAAGGAGATCAGTTG+CGG | - | chr8_2:14461663-14461682 | Msa1236030:intron | 40.0% | |
| CCAATTTCAAGATCATGCCA+AGG | + | chr8_2:14461694-14461713 | None:intergenic | 40.0% | |
| CCTTGGCATGATCTTGAAAT+TGG | - | chr8_2:14461691-14461710 | Msa1236030:intron | 40.0% | |
| CAGGTTGTAGAGATCACTAA+GGG | - | chr8_2:14461958-14461977 | Msa1236030:CDS | 40.0% | |
| AGAGATCACTAAGGGAAGTA+AGG | - | chr8_2:14461966-14461985 | Msa1236030:CDS | 40.0% | |
| !! | CTTCCAATGTTCAGGTTGAT+CGG | - | chr8_2:14462100-14462119 | Msa1236030:intron | 40.0% |
| AATCCGATCAACCTGAACAT+TGG | + | chr8_2:14462106-14462125 | None:intergenic | 40.0% | |
| TGTCTTCACATAGAGTTCGA+GGG | + | chr8_2:14462170-14462189 | None:intergenic | 40.0% | |
| TTGTCTTCACATAGAGTTCG+AGG | + | chr8_2:14462171-14462190 | None:intergenic | 40.0% | |
| ATAGGTCACAACTCACAACA+AGG | + | chr8_2:14462236-14462255 | None:intergenic | 40.0% | |
| CATAACAATAGTTCCGGTTC+TGG | - | chr8_2:14462267-14462286 | Msa1236030:intron | 40.0% | |
| TCGATAATTCTGTCCAGAAC+CGG | + | chr8_2:14462283-14462302 | None:intergenic | 40.0% | |
| TTAATCTCCATTAGGCGATG+AGG | + | chr8_2:14462645-14462664 | None:intergenic | 40.0% | |
| CAAGAAGAATGAGAACAAGG+AGG | - | chr8_2:14463185-14463204 | Msa1236030:intron | 40.0% | |
| AGGGTCTTTGGATTTGGACT+AGG | - | chr8_2:14461120-14461139 | Msa1236030:intron | 45.0% | |
| TCAACTTGAACCGTCCGATT+CGG | + | chr8_2:14461191-14461210 | None:intergenic | 45.0% | |
| !! | TGGCCTCGTTCTGTTTTGAA+TGG | - | chr8_2:14461260-14461279 | Msa1236030:intron | 45.0% |
| AGTAGTTGTACCATGACTGG+AGG | - | chr8_2:14461288-14461307 | Msa1236030:intron | 45.0% | |
| CTTTCATTCAAACGGGGAGT+TGG | + | chr8_2:14461631-14461650 | None:intergenic | 45.0% | |
| GCAGGTTGTAGAGATCACTA+AGG | - | chr8_2:14461957-14461976 | Msa1236030:CDS | 45.0% | |
| CAATGATCCACTCGATGTCT+TGG | - | chr8_2:14462188-14462207 | Msa1236030:CDS | 45.0% | |
| ATGAGAACCAAGACATCGAG+TGG | + | chr8_2:14462198-14462217 | None:intergenic | 45.0% | |
| AGGAAACAACCAGGAAGAAC+AGG | + | chr8_2:14462411-14462430 | None:intergenic | 45.0% | |
| ACTTCAACCTCATCGCCTAA+TGG | - | chr8_2:14462635-14462654 | Msa1236030:intron | 45.0% | |
| ATGGCATCAACAGCAGTAGA+TGG | + | chr8_2:14463234-14463253 | None:intergenic | 45.0% | |
| !!! | ATTTTCTATTTTTAAATTTT+TGG | - | chr8_2:14462785-14462804 | Msa1236030:intron | 5.0% |
| GCAGAAACAGCATAACGCAG+TGG | + | chr8_2:14461913-14461932 | None:intergenic | 50.0% | |
| ! | CGATGTCTTGGTTCTCATGC+AGG | - | chr8_2:14462200-14462219 | Msa1236030:CDS | 50.0% |
| CATACTTACACAGGGGGAGA+AGG | - | chr8_2:14462548-14462567 | Msa1236030:intron | 50.0% | |
| GCATCAACAGCAGTAGATGG+TGG | + | chr8_2:14463231-14463250 | None:intergenic | 50.0% | |
| ! | ACTTGCTAGGCCTCCAGTCA+TGG | + | chr8_2:14461301-14461320 | None:intergenic | 55.0% |
| ATTCAAACGGGGAGTTGGGC+GGG | + | chr8_2:14461626-14461645 | None:intergenic | 55.0% | |
| CATTCAAACGGGGAGTTGGG+CGG | + | chr8_2:14461627-14461646 | None:intergenic | 55.0% | |
| CTTGCTCGCAGGAAACAACC+AGG | + | chr8_2:14462420-14462439 | None:intergenic | 55.0% | |
| TTCCTGCGAGCAAGAGCCAT+TGG | - | chr8_2:14462426-14462445 | Msa1236030:intron | 55.0% | |
| GATCAGTTGCGGCTCACCCT+TGG | - | chr8_2:14461674-14461693 | Msa1236030:intron | 60.0% | |
| TGGCAGGAGCCTGTTCTTCC+TGG | - | chr8_2:14462399-14462418 | Msa1236030:CDS | 60.0% | |
| GTCCAATGGCTCTTGCTCGC+AGG | + | chr8_2:14462431-14462450 | None:intergenic | 60.0% | |
| ! | CGCGGTATGCGCTGATGATC+CGG | - | chr8_2:14462584-14462603 | Msa1236030:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 14460628 | 14463763 | 14460628 | ID=Msa1236030;Name=Msa1236030 |
| chr8_2 | mRNA | 14460628 | 14463763 | 14460628 | ID=Msa1236030-mRNA-1;Parent=Msa1236030;Name=Msa1236030-mRNA-1;_AED=0.18;_eAED=0.18;_QI=52|1|1|1|0.87|0.88|9|248|212 |
| chr8_2 | exon | 14460628 | 14460918 | 14460628 | ID=Msa1236030-mRNA-1:exon:5576;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14461126 | 14461207 | 14461126 | ID=Msa1236030-mRNA-1:exon:5575;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14461710 | 14461830 | 14461710 | ID=Msa1236030-mRNA-1:exon:5574;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14461921 | 14461986 | 14461921 | ID=Msa1236030-mRNA-1:exon:5573;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14462170 | 14462277 | 14462170 | ID=Msa1236030-mRNA-1:exon:5572;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14462365 | 14462430 | 14462365 | ID=Msa1236030-mRNA-1:exon:5571;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14462532 | 14462560 | 14462532 | ID=Msa1236030-mRNA-1:exon:5570;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14462679 | 14462802 | 14462679 | ID=Msa1236030-mRNA-1:exon:5569;Parent=Msa1236030-mRNA-1 |
| chr8_2 | exon | 14463712 | 14463763 | 14463712 | ID=Msa1236030-mRNA-1:exon:5568;Parent=Msa1236030-mRNA-1 |
| chr8_2 | five_prime_UTR | 14463712 | 14463763 | 14463712 | ID=Msa1236030-mRNA-1:five_prime_utr;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14462679 | 14462802 | 14462679 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14462532 | 14462560 | 14462532 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14462365 | 14462430 | 14462365 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14462170 | 14462277 | 14462170 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14461921 | 14461986 | 14461921 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14461710 | 14461830 | 14461710 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14461126 | 14461207 | 14461126 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | CDS | 14460876 | 14460918 | 14460876 | ID=Msa1236030-mRNA-1:cds;Parent=Msa1236030-mRNA-1 |
| chr8_2 | three_prime_UTR | 14460628 | 14460875 | 14460628 | ID=Msa1236030-mRNA-1:three_prime_utr;Parent=Msa1236030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
