Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393010 | XP_003603787.2 | 74.834 | 151 | 20 | 2 | 1 | 139 | 1 | 145 | 7.25e-68 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393010 | I3S629 | 74.834 | 151 | 20 | 2 | 1 | 139 | 1 | 145 | 3.46e-68 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa0393010 | 0.828353 | 9.426231e-55 | -8.615850e-47 |
| Msa0393010 | Msa0465150 | 0.873081 | 1.938110e-67 | -8.615850e-47 |
| Msa0393010 | Msa0465180 | 0.892137 | 2.094137e-74 | -8.615850e-47 |
| Msa0393010 | Msa0465200 | 0.873885 | 1.038953e-67 | -8.615850e-47 |
| Msa0393010 | Msa1398610 | 0.893369 | 6.704108e-75 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0393010 | MtrunA17_Chr3g0143041 | 74.834 | 151 | 20 | 2 | 1 | 139 | 1 | 145 | 6.67e-72 | 213 |
| Msa0393010 | MtrunA17_Chr3g0143031 | 74.834 | 151 | 20 | 2 | 1 | 139 | 1 | 145 | 6.67e-72 | 213 |
| Msa0393010 | MtrunA17_Chr3g0142551 | 74.138 | 116 | 12 | 2 | 25 | 128 | 1 | 110 | 1.82e-51 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 45 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGCCGCTGCCACCGCAAA+TGG | 0.342204 | 3_2:-6677361 | Msa0393010:CDS |
| TCGTTGTCTTCCTTCTTCAT+TGG | 0.345710 | 3_2:-6677940 | Msa0393010:five_prime_UTR |
| CCTCATCCTCATCATGTTTG+AGG | 0.378174 | 3_2:-6677904 | Msa0393010:intron |
| CGCGATCAGTGAGTGGATAT+CGG | 0.380994 | 3_2:+6677981 | None:intergenic |
| GCGATCGTGAAGGGCCCATT+GGG | 0.386875 | 3_2:+6677379 | None:intergenic |
| TTTCTAACAGCATGCATACT+TGG | 0.388120 | 3_2:-6676766 | Msa0393010:intron |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.393602 | 3_2:+6677160 | None:intergenic |
| CTTGCCTCATCAAGTAGAAC+TGG | 0.396402 | 3_2:+6676855 | None:intergenic |
| ATAGAAAGAAAACTTCTTCA+TGG | 0.406125 | 3_2:-6677231 | Msa0393010:intron |
| AAAGAGGAGCTGTTGCTGAT+AGG | 0.450135 | 3_2:-6676645 | Msa0393010:CDS |
| CAGCCTAGACTCTCCCCAAT+GGG | 0.493581 | 3_2:-6677393 | Msa0393010:CDS |
| GTGGCAGCGGCGATCGTGAA+GGG | 0.497340 | 3_2:+6677370 | None:intergenic |
| TCGCCGCTGCCACCGCAAAT+GGG | 0.497902 | 3_2:-6677360 | Msa0393010:intron |
| TTACCCATTTGCGGTGGCAG+CGG | 0.498333 | 3_2:+6677357 | None:intergenic |
| GCAAACTATTGAACAAAAGT+AGG | 0.499875 | 3_2:+6678003 | None:intergenic |
| GGCGATCGTGAAGGGCCCAT+TGG | 0.507637 | 3_2:+6677378 | None:intergenic |
| CCTCAAACATGATGAGGATG+AGG | 0.511335 | 3_2:+6677904 | None:intergenic |
| CATACTTGGAGCATGAGAAA+AGG | 0.512804 | 3_2:-6676752 | Msa0393010:CDS |
| GCAGCCTAGACTCTCCCCAA+TGG | 0.518335 | 3_2:-6677394 | Msa0393010:CDS |
| GGTGGCAGCGGCGATCGTGA+AGG | 0.523538 | 3_2:+6677369 | None:intergenic |
| TCTTTATGATGCAAAGACGT+TGG | 0.523924 | 3_2:-6677109 | Msa0393010:CDS |
| TTGGGGAGAGTCTAGGCTGC+TGG | 0.526710 | 3_2:+6677397 | None:intergenic |
| TAGAAAGAAAACTTCTTCAT+GGG | 0.536460 | 3_2:-6677230 | Msa0393010:CDS |
| TAGGTTGAATTACCCATTTG+CGG | 0.539206 | 3_2:+6677348 | None:intergenic |
| GGGCCCATTGGGGAGAGTCT+AGG | 0.539319 | 3_2:+6677390 | None:intergenic |
| AACTTCTTCATGGGAAGAAG+CGG | 0.539516 | 3_2:-6677221 | Msa0393010:CDS |
| GCGTCTTGAGAAAGGGAAAG+AGG | 0.542494 | 3_2:-6676661 | Msa0393010:CDS |
| ACAAAGGAGGATCTTCTCCA+TGG | 0.556428 | 3_2:-6677177 | Msa0393010:CDS |
| GTATACAAATCCAATGAAGA+AGG | 0.561388 | 3_2:+6677930 | None:intergenic |
| TAGATACAATAGACCTCAAG+TGG | 0.578362 | 3_2:-6676881 | Msa0393010:CDS |
| AAAATACCTCAAACATGATG+AGG | 0.584901 | 3_2:+6677898 | None:intergenic |
| AAAAGTAGAAAGCACAAAGG+AGG | 0.607683 | 3_2:-6677190 | Msa0393010:CDS |
| CAAAGGAGGATCTTCTCCAT+GGG | 0.608293 | 3_2:-6677176 | Msa0393010:CDS |
| GTCTCCAGTTCTACTTGATG+AGG | 0.634495 | 3_2:-6676859 | Msa0393010:CDS |
| CTCAAACATGATGAGGATGA+GGG | 0.642638 | 3_2:+6677905 | None:intergenic |
| AAACAGACGCGATCAGTGAG+TGG | 0.659494 | 3_2:+6677974 | None:intergenic |
| AGCATGCAGAGGAAAAGAAG+CGG | 0.669158 | 3_2:-6676710 | Msa0393010:CDS |
| TCTTCATGGGAAGAAGCGGA+AGG | 0.671311 | 3_2:-6677217 | Msa0393010:CDS |
| TCTCCATGGGAAGAAGCCAA+AGG | 0.672590 | 3_2:-6677163 | Msa0393010:CDS |
| GTAGAACTGGAGACCACTTG+AGG | 0.676015 | 3_2:+6676868 | None:intergenic |
| ACTCTTCAAGAAGCATGCAG+AGG | 0.682031 | 3_2:-6676721 | Msa0393010:CDS |
| CGATCGTGAAGGGCCCATTG+GGG | 0.686580 | 3_2:+6677380 | None:intergenic |
| ATGCAGAGGAAAAGAAGCGG+TGG | 0.691365 | 3_2:-6676707 | Msa0393010:CDS |
| GTTGAATTACCCATTTGCGG+TGG | 0.691582 | 3_2:+6677351 | None:intergenic |
| AAACATGATGAGGATGAGGG+AGG | 0.717286 | 3_2:+6677908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATAGAATGTTTATTTTTA+TGG | - | chr3_2:6676889-6676908 | Msa0393010:CDS | 10.0% |
| !!! | AAATAGAATGTTTATTTTTA+TGG | - | chr3_2:6676889-6676908 | Msa0393010:CDS | 10.0% |
| !! | AAAATAATGACAATAAAATG+AGG | + | chr3_2:6677162-6677181 | None:intergenic | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | + | chr3_2:6677199-6677218 | None:intergenic | 15.0% |
| !! | AAAATAATGACAATAAAATG+AGG | + | chr3_2:6677162-6677181 | None:intergenic | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | + | chr3_2:6677199-6677218 | None:intergenic | 15.0% |
| !! | ATTATCAACTAGAATTGAAA+AGG | + | chr3_2:6676778-6676797 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | - | chr3_2:6677072-6677091 | Msa0393010:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | - | chr3_2:6677073-6677092 | Msa0393010:intron | 20.0% |
| !! | AAGAATACTTGTAAGAAAAT+AGG | + | chr3_2:6677326-6677345 | None:intergenic | 20.0% |
| !! | ATTATCAACTAGAATTGAAA+AGG | + | chr3_2:6676778-6676797 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTTTTATTTGCA+AGG | - | chr3_2:6677072-6677091 | Msa0393010:intron | 20.0% |
| !!! | GATTTTCTTTTTATTTGCAA+GGG | - | chr3_2:6677073-6677092 | Msa0393010:intron | 20.0% |
| !! | AAGAATACTTGTAAGAAAAT+AGG | + | chr3_2:6677326-6677345 | None:intergenic | 20.0% |
| !! | AAAAAAATCAGTGTAATGGA+AGG | + | chr3_2:6676922-6676941 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAATCAGTGTAA+TGG | + | chr3_2:6676926-6676945 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | - | chr3_2:6677205-6677224 | Msa0393010:CDS | 25.0% |
| ! | ACTTGTAAGAAAATAGGATT+AGG | + | chr3_2:6677320-6677339 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCA+TGG | - | chr3_2:6677415-6677434 | Msa0393010:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCAT+GGG | - | chr3_2:6677416-6677435 | Msa0393010:intron | 25.0% |
| !! | AAAAAAATCAGTGTAATGGA+AGG | + | chr3_2:6676922-6676941 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAATCAGTGTAA+TGG | + | chr3_2:6676926-6676945 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | - | chr3_2:6677205-6677224 | Msa0393010:CDS | 25.0% |
| ! | ACTTGTAAGAAAATAGGATT+AGG | + | chr3_2:6677320-6677339 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCA+TGG | - | chr3_2:6677415-6677434 | Msa0393010:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCAT+GGG | - | chr3_2:6677416-6677435 | Msa0393010:intron | 25.0% |
| GCAAACTATTGAACAAAAGT+AGG | + | chr3_2:6676646-6676665 | None:intergenic | 30.0% | |
| GTATACAAATCCAATGAAGA+AGG | + | chr3_2:6676719-6676738 | None:intergenic | 30.0% | |
| AAAATACCTCAAACATGATG+AGG | + | chr3_2:6676751-6676770 | None:intergenic | 30.0% | |
| ! | TCAGATTTGTTTGTGAGATT+AGG | - | chr3_2:6676831-6676850 | Msa0393010:intron | 30.0% |
| ! | CAGATTTGTTTGTGAGATTA+GGG | - | chr3_2:6676832-6676851 | Msa0393010:intron | 30.0% |
| ! | TTCCAATCTTCTCTTATTTG+TGG | - | chr3_2:6676996-6677015 | Msa0393010:intron | 30.0% |
| ! | TCCAATCTTCTCTTATTTGT+GGG | - | chr3_2:6676997-6677016 | Msa0393010:intron | 30.0% |
| ! | TTCTCTTATTTGTGGGATTA+GGG | - | chr3_2:6677004-6677023 | Msa0393010:intron | 30.0% |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | - | chr3_2:6677023-6677042 | Msa0393010:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | - | chr3_2:6677024-6677043 | Msa0393010:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | - | chr3_2:6677025-6677044 | Msa0393010:intron | 30.0% |
| ! | ACAATAAAATGAGGAGCATA+TGG | + | chr3_2:6677153-6677172 | None:intergenic | 30.0% |
| CTCTGTTGGAATTTATTCAA+AGG | - | chr3_2:6677219-6677238 | Msa0393010:CDS | 30.0% | |
| CAAATAATAACTTCACGCTT+TGG | - | chr3_2:6677369-6677388 | Msa0393010:CDS | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | - | chr3_2:6677508-6677527 | Msa0393010:intron | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | - | chr3_2:6677709-6677728 | Msa0393010:intron | 30.0% |
| GCAAACTATTGAACAAAAGT+AGG | + | chr3_2:6676646-6676665 | None:intergenic | 30.0% | |
| GTATACAAATCCAATGAAGA+AGG | + | chr3_2:6676719-6676738 | None:intergenic | 30.0% | |
| AAAATACCTCAAACATGATG+AGG | + | chr3_2:6676751-6676770 | None:intergenic | 30.0% | |
| ! | TCAGATTTGTTTGTGAGATT+AGG | - | chr3_2:6676831-6676850 | Msa0393010:intron | 30.0% |
| ! | CAGATTTGTTTGTGAGATTA+GGG | - | chr3_2:6676832-6676851 | Msa0393010:intron | 30.0% |
| ! | TTCCAATCTTCTCTTATTTG+TGG | - | chr3_2:6676996-6677015 | Msa0393010:intron | 30.0% |
| ! | TCCAATCTTCTCTTATTTGT+GGG | - | chr3_2:6676997-6677016 | Msa0393010:intron | 30.0% |
| ! | TTCTCTTATTTGTGGGATTA+GGG | - | chr3_2:6677004-6677023 | Msa0393010:intron | 30.0% |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | - | chr3_2:6677023-6677042 | Msa0393010:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | - | chr3_2:6677024-6677043 | Msa0393010:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | - | chr3_2:6677025-6677044 | Msa0393010:intron | 30.0% |
| ! | ACAATAAAATGAGGAGCATA+TGG | + | chr3_2:6677153-6677172 | None:intergenic | 30.0% |
| CTCTGTTGGAATTTATTCAA+AGG | - | chr3_2:6677219-6677238 | Msa0393010:CDS | 30.0% | |
| CAAATAATAACTTCACGCTT+TGG | - | chr3_2:6677369-6677388 | Msa0393010:CDS | 30.0% | |
| !! | CAAAAAGTAGAAAGTACTGA+TGG | - | chr3_2:6677508-6677527 | Msa0393010:intron | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | - | chr3_2:6677709-6677728 | Msa0393010:intron | 30.0% |
| TCCCACAAATAAGAGAAGAT+TGG | + | chr3_2:6677001-6677020 | None:intergenic | 35.0% | |
| ! | CTTCTCTTATTTGTGGGATT+AGG | - | chr3_2:6677003-6677022 | Msa0393010:intron | 35.0% |
| CAGATTGACACACACAAAAT+TGG | + | chr3_2:6677054-6677073 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | - | chr3_2:6677087-6677106 | Msa0393010:intron | 35.0% |
| ! | TAGGTTGAATTACCCATTTG+CGG | + | chr3_2:6677301-6677320 | None:intergenic | 35.0% |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | - | chr3_2:6677453-6677472 | Msa0393010:intron | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | - | chr3_2:6677456-6677475 | Msa0393010:intron | 35.0% |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | + | chr3_2:6677448-6677467 | None:intergenic | 35.0% |
| TCTTTATGATGCAAAGACGT+TGG | - | chr3_2:6677537-6677556 | Msa0393010:intron | 35.0% | |
| GAAGAAACAAACATAAGCTG+AGG | + | chr3_2:6677697-6677716 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | - | chr3_2:6677765-6677784 | Msa0393010:intron | 35.0% | |
| TTTCTAACAGCATGCATACT+TGG | - | chr3_2:6677880-6677899 | Msa0393010:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | - | chr3_2:6677978-6677997 | Msa0393010:five_prime_UTR | 35.0% |
| TCCCACAAATAAGAGAAGAT+TGG | + | chr3_2:6677001-6677020 | None:intergenic | 35.0% | |
| ! | CTTCTCTTATTTGTGGGATT+AGG | - | chr3_2:6677003-6677022 | Msa0393010:intron | 35.0% |
| CAGATTGACACACACAAAAT+TGG | + | chr3_2:6677054-6677073 | None:intergenic | 35.0% | |
| ! | TTGCAAGGGTTTTTGTTGAT+TGG | - | chr3_2:6677087-6677106 | Msa0393010:intron | 35.0% |
| ! | TAGGTTGAATTACCCATTTG+CGG | + | chr3_2:6677301-6677320 | None:intergenic | 35.0% |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | - | chr3_2:6677453-6677472 | Msa0393010:intron | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | - | chr3_2:6677456-6677475 | Msa0393010:intron | 35.0% |
| !!! | CTTTCTACTTTTTGCTCCTT+TGG | + | chr3_2:6677448-6677467 | None:intergenic | 35.0% |
| TCTTTATGATGCAAAGACGT+TGG | - | chr3_2:6677537-6677556 | Msa0393010:intron | 35.0% | |
| GAAGAAACAAACATAAGCTG+AGG | + | chr3_2:6677697-6677716 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | - | chr3_2:6677765-6677784 | Msa0393010:intron | 35.0% | |
| TTTCTAACAGCATGCATACT+TGG | - | chr3_2:6677880-6677899 | Msa0393010:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | - | chr3_2:6677978-6677997 | Msa0393010:five_prime_UTR | 35.0% |
| TCGTTGTCTTCCTTCTTCAT+TGG | - | chr3_2:6676706-6676725 | Msa0393010:CDS | 40.0% | |
| CTCAAACATGATGAGGATGA+GGG | + | chr3_2:6676744-6676763 | None:intergenic | 40.0% | |
| ! | CTGTTCTGTGTTGTGTTGAT+TGG | - | chr3_2:6676968-6676987 | Msa0393010:intron | 40.0% |
| AACTTCTTCATGGGAAGAAG+CGG | - | chr3_2:6677425-6677444 | Msa0393010:intron | 40.0% | |
| ! | CTCTCTCTGCTGTTTACATT+TGG | - | chr3_2:6677663-6677682 | Msa0393010:intron | 40.0% |
| CATACTTGGAGCATGAGAAA+AGG | - | chr3_2:6677894-6677913 | Msa0393010:intron | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | - | chr3_2:6677977-6677996 | Msa0393010:five_prime_UTR | 40.0% |
| TCGTTGTCTTCCTTCTTCAT+TGG | - | chr3_2:6676706-6676725 | Msa0393010:CDS | 40.0% | |
| CTCAAACATGATGAGGATGA+GGG | + | chr3_2:6676744-6676763 | None:intergenic | 40.0% | |
| ! | CTGTTCTGTGTTGTGTTGAT+TGG | - | chr3_2:6676968-6676987 | Msa0393010:intron | 40.0% |
| AACTTCTTCATGGGAAGAAG+CGG | - | chr3_2:6677425-6677444 | Msa0393010:intron | 40.0% | |
| ! | CTCTCTCTGCTGTTTACATT+TGG | - | chr3_2:6677663-6677682 | Msa0393010:intron | 40.0% |
| CATACTTGGAGCATGAGAAA+AGG | - | chr3_2:6677894-6677913 | Msa0393010:intron | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | - | chr3_2:6677977-6677996 | Msa0393010:five_prime_UTR | 40.0% |
| AAACATGATGAGGATGAGGG+AGG | + | chr3_2:6676741-6676760 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGATG+AGG | + | chr3_2:6676745-6676764 | None:intergenic | 45.0% | |
| CCTCATCCTCATCATGTTTG+AGG | - | chr3_2:6676742-6676761 | Msa0393010:CDS | 45.0% | |
| GTTGAATTACCCATTTGCGG+TGG | + | chr3_2:6677298-6677317 | None:intergenic | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | - | chr3_2:6677469-6677488 | Msa0393010:intron | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | - | chr3_2:6677470-6677489 | Msa0393010:intron | 45.0% | |
| GTCTCCAGTTCTACTTGATG+AGG | - | chr3_2:6677787-6677806 | Msa0393010:intron | 45.0% | |
| CTTGCCTCATCAAGTAGAAC+TGG | + | chr3_2:6677794-6677813 | None:intergenic | 45.0% | |
| ! | ACTCTTCAAGAAGCATGCAG+AGG | - | chr3_2:6677925-6677944 | Msa0393010:five_prime_UTR | 45.0% |
| AGCATGCAGAGGAAAAGAAG+CGG | - | chr3_2:6677936-6677955 | Msa0393010:five_prime_UTR | 45.0% | |
| AAAGAGGAGCTGTTGCTGAT+AGG | - | chr3_2:6678001-6678020 | Msa0393010:five_prime_UTR | 45.0% | |
| AAACATGATGAGGATGAGGG+AGG | + | chr3_2:6676741-6676760 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGATG+AGG | + | chr3_2:6676745-6676764 | None:intergenic | 45.0% | |
| CCTCATCCTCATCATGTTTG+AGG | - | chr3_2:6676742-6676761 | Msa0393010:CDS | 45.0% | |
| GTTGAATTACCCATTTGCGG+TGG | + | chr3_2:6677298-6677317 | None:intergenic | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | - | chr3_2:6677469-6677488 | Msa0393010:intron | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | - | chr3_2:6677470-6677489 | Msa0393010:intron | 45.0% | |
| GTCTCCAGTTCTACTTGATG+AGG | - | chr3_2:6677787-6677806 | Msa0393010:intron | 45.0% | |
| CTTGCCTCATCAAGTAGAAC+TGG | + | chr3_2:6677794-6677813 | None:intergenic | 45.0% | |
| ! | ACTCTTCAAGAAGCATGCAG+AGG | - | chr3_2:6677925-6677944 | Msa0393010:five_prime_UTR | 45.0% |
| AGCATGCAGAGGAAAAGAAG+CGG | - | chr3_2:6677936-6677955 | Msa0393010:five_prime_UTR | 45.0% | |
| AAAGAGGAGCTGTTGCTGAT+AGG | - | chr3_2:6678001-6678020 | Msa0393010:five_prime_UTR | 45.0% | |
| CGCGATCAGTGAGTGGATAT+CGG | + | chr3_2:6676668-6676687 | None:intergenic | 50.0% | |
| AAACAGACGCGATCAGTGAG+TGG | + | chr3_2:6676675-6676694 | None:intergenic | 50.0% | |
| TCTTCATGGGAAGAAGCGGA+AGG | - | chr3_2:6677429-6677448 | Msa0393010:intron | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | - | chr3_2:6677483-6677502 | Msa0393010:intron | 50.0% | |
| GTAGAACTGGAGACCACTTG+AGG | + | chr3_2:6677781-6677800 | None:intergenic | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | - | chr3_2:6677939-6677958 | Msa0393010:five_prime_UTR | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | - | chr3_2:6677985-6678004 | Msa0393010:five_prime_UTR | 50.0% | |
| CGCGATCAGTGAGTGGATAT+CGG | + | chr3_2:6676668-6676687 | None:intergenic | 50.0% | |
| AAACAGACGCGATCAGTGAG+TGG | + | chr3_2:6676675-6676694 | None:intergenic | 50.0% | |
| TCTTCATGGGAAGAAGCGGA+AGG | - | chr3_2:6677429-6677448 | Msa0393010:intron | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | - | chr3_2:6677483-6677502 | Msa0393010:intron | 50.0% | |
| GTAGAACTGGAGACCACTTG+AGG | + | chr3_2:6677781-6677800 | None:intergenic | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | - | chr3_2:6677939-6677958 | Msa0393010:five_prime_UTR | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | - | chr3_2:6677985-6678004 | Msa0393010:five_prime_UTR | 50.0% | |
| CAGCCTAGACTCTCCCCAAT+GGG | - | chr3_2:6677253-6677272 | Msa0393010:intron | 55.0% | |
| TTACCCATTTGCGGTGGCAG+CGG | + | chr3_2:6677292-6677311 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | + | chr3_2:6677489-6677508 | None:intergenic | 55.0% |
| CAGCCTAGACTCTCCCCAAT+GGG | - | chr3_2:6677253-6677272 | Msa0393010:intron | 55.0% | |
| TTACCCATTTGCGGTGGCAG+CGG | + | chr3_2:6677292-6677311 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | + | chr3_2:6677489-6677508 | None:intergenic | 55.0% |
| TTGGGGAGAGTCTAGGCTGC+TGG | + | chr3_2:6677252-6677271 | None:intergenic | 60.0% | |
| GCAGCCTAGACTCTCCCCAA+TGG | - | chr3_2:6677252-6677271 | Msa0393010:intron | 60.0% | |
| CGATCGTGAAGGGCCCATTG+GGG | + | chr3_2:6677269-6677288 | None:intergenic | 60.0% | |
| GCGATCGTGAAGGGCCCATT+GGG | + | chr3_2:6677270-6677289 | None:intergenic | 60.0% | |
| TTGGGGAGAGTCTAGGCTGC+TGG | + | chr3_2:6677252-6677271 | None:intergenic | 60.0% | |
| GCAGCCTAGACTCTCCCCAA+TGG | - | chr3_2:6677252-6677271 | Msa0393010:intron | 60.0% | |
| CGATCGTGAAGGGCCCATTG+GGG | + | chr3_2:6677269-6677288 | None:intergenic | 60.0% | |
| GCGATCGTGAAGGGCCCATT+GGG | + | chr3_2:6677270-6677289 | None:intergenic | 60.0% | |
| GGGCCCATTGGGGAGAGTCT+AGG | + | chr3_2:6677259-6677278 | None:intergenic | 65.0% | |
| GGCGATCGTGAAGGGCCCAT+TGG | + | chr3_2:6677271-6677290 | None:intergenic | 65.0% | |
| GTGGCAGCGGCGATCGTGAA+GGG | + | chr3_2:6677279-6677298 | None:intergenic | 65.0% | |
| ATCGCCGCTGCCACCGCAAA+TGG | - | chr3_2:6677285-6677304 | Msa0393010:intron | 65.0% | |
| TCGCCGCTGCCACCGCAAAT+GGG | - | chr3_2:6677286-6677305 | Msa0393010:intron | 65.0% | |
| GGGCCCATTGGGGAGAGTCT+AGG | + | chr3_2:6677259-6677278 | None:intergenic | 65.0% | |
| GGCGATCGTGAAGGGCCCAT+TGG | + | chr3_2:6677271-6677290 | None:intergenic | 65.0% | |
| GTGGCAGCGGCGATCGTGAA+GGG | + | chr3_2:6677279-6677298 | None:intergenic | 65.0% | |
| ATCGCCGCTGCCACCGCAAA+TGG | - | chr3_2:6677285-6677304 | Msa0393010:intron | 65.0% | |
| TCGCCGCTGCCACCGCAAAT+GGG | - | chr3_2:6677286-6677305 | Msa0393010:intron | 65.0% | |
| GGTGGCAGCGGCGATCGTGA+AGG | + | chr3_2:6677280-6677299 | None:intergenic | 70.0% | |
| GGTGGCAGCGGCGATCGTGA+AGG | + | chr3_2:6677280-6677299 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 6676641 | 6678027 | 6676641 | ID=Msa0393010;Name=Msa0393010 |
| chr3_2 | mRNA | 6676641 | 6678027 | 6676641 | ID=Msa0393010-mRNA-1;Parent=Msa0393010;Name=Msa0393010-mRNA-1;_AED=0.21;_eAED=0.21;_QI=114|0.5|0.4|1|0.5|0.6|5|0|146 |
| chr3_2 | exon | 6676641 | 6676778 | 6676641 | ID=Msa0393010-mRNA-1:exon:1696;Parent=Msa0393010-mRNA-1 |
| chr3_2 | exon | 6676842 | 6676924 | 6676842 | ID=Msa0393010-mRNA-1:exon:1695;Parent=Msa0393010-mRNA-1 |
| chr3_2 | exon | 6677106 | 6677249 | 6677106 | ID=Msa0393010-mRNA-1:exon:1694;Parent=Msa0393010-mRNA-1 |
| chr3_2 | exon | 6677361 | 6677427 | 6677361 | ID=Msa0393010-mRNA-1:exon:1693;Parent=Msa0393010-mRNA-1 |
| chr3_2 | exon | 6677905 | 6678027 | 6677905 | ID=Msa0393010-mRNA-1:exon:1692;Parent=Msa0393010-mRNA-1 |
| chr3_2 | five_prime_UTR | 6677914 | 6678027 | 6677914 | ID=Msa0393010-mRNA-1:five_prime_utr;Parent=Msa0393010-mRNA-1 |
| chr3_2 | CDS | 6677905 | 6677913 | 6677905 | ID=Msa0393010-mRNA-1:cds;Parent=Msa0393010-mRNA-1 |
| chr3_2 | CDS | 6677361 | 6677427 | 6677361 | ID=Msa0393010-mRNA-1:cds;Parent=Msa0393010-mRNA-1 |
| chr3_2 | CDS | 6677106 | 6677249 | 6677106 | ID=Msa0393010-mRNA-1:cds;Parent=Msa0393010-mRNA-1 |
| chr3_2 | CDS | 6676842 | 6676924 | 6676842 | ID=Msa0393010-mRNA-1:cds;Parent=Msa0393010-mRNA-1 |
| chr3_2 | CDS | 6676641 | 6676778 | 6676641 | ID=Msa0393010-mRNA-1:cds;Parent=Msa0393010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
