Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465180 | XP_003603787.2 | 76.552 | 145 | 22 | 1 | 1 | 133 | 1 | 145 | 2.18e-69 | 216 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465180 | I3S629 | 76.552 | 145 | 22 | 1 | 1 | 133 | 1 | 145 | 1.04e-69 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa0465180 | 0.853251 | 2.704396e-61 | -8.615850e-47 |
| Msa0092550 | Msa0465180 | 0.839485 | 1.540335e-57 | -8.615850e-47 |
| Msa0092590 | Msa0465180 | 0.839703 | 1.352345e-57 | -8.615850e-47 |
| Msa0393010 | Msa0465180 | 0.892137 | 2.094137e-74 | -8.615850e-47 |
| Msa0419240 | Msa0465180 | 0.800295 | 1.540967e-48 | -8.615850e-47 |
| Msa0465150 | Msa0465180 | 0.954603 | 2.036935e-112 | -8.615850e-47 |
| Msa0465180 | Msa0465200 | 0.931291 | 4.692526e-94 | -8.615850e-47 |
| Msa0465180 | Msa1398610 | 0.973484 | 1.658521e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465180 | MtrunA17_Chr3g0143041 | 76.552 | 145 | 22 | 1 | 1 | 133 | 1 | 145 | 2.01e-73 | 216 |
| Msa0465180 | MtrunA17_Chr3g0143031 | 76.552 | 145 | 22 | 1 | 1 | 133 | 1 | 145 | 2.01e-73 | 216 |
| Msa0465180 | MtrunA17_Chr3g0142551 | 76.364 | 110 | 14 | 1 | 25 | 122 | 1 | 110 | 8.03e-53 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGCCACTGCCACCGCAAA+TGG | 0.308037 | 3_3:+65527579 | Msa0465180:CDS |
| GCGATCGTGAAGGGCCCATT+GGG | 0.376549 | 3_3:-65527561 | None:intergenic |
| CCTCATCCTCATCATGTTTG+AGG | 0.378174 | 3_3:+65527011 | Msa0465180:exon |
| TCGTTGTCTTCATTCTTCAT+TGG | 0.383297 | 3_3:+65526975 | Msa0465180:five_prime_UTR |
| TTTCTAACAGCATGCATACT+TGG | 0.388120 | 3_3:+65528092 | Msa0465180:intron |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.393602 | 3_3:-65527780 | None:intergenic |
| CTTGCCTCATCAAGTAGAAC+TGG | 0.396402 | 3_3:-65528003 | None:intergenic |
| CGCGATCAGCGAGTGGATAT+CGG | 0.396943 | 3_3:-65526934 | None:intergenic |
| ATAGAAAGAAAACTTCTTCA+TGG | 0.406125 | 3_3:+65527709 | Msa0465180:intron |
| AAAGAGGAGCTGTTGCTGAT+AGG | 0.450135 | 3_3:+65528213 | Msa0465180:CDS |
| GGCGATCGTGAAGGGCCCAT+TGG | 0.490048 | 3_3:-65527562 | None:intergenic |
| CAGCCTAGACTCTCCCCAAT+GGG | 0.493581 | 3_3:+65527547 | Msa0465180:CDS |
| TTACCCATTTGCGGTGGCAG+TGG | 0.496798 | 3_3:-65527583 | None:intergenic |
| TCGCCACTGCCACCGCAAAT+GGG | 0.500247 | 3_3:+65527580 | Msa0465180:CDS |
| CCTCAAACATGATGAGGATG+AGG | 0.511335 | 3_3:-65527011 | None:intergenic |
| CATACTTGGAGCATGAGAAA+AGG | 0.512804 | 3_3:+65528106 | Msa0465180:CDS |
| GTGGCAGTGGCGATCGTGAA+GGG | 0.513908 | 3_3:-65527570 | None:intergenic |
| GCAGCCTAGACTCTCCCCAA+TGG | 0.518335 | 3_3:+65527546 | Msa0465180:CDS |
| TTGGGGAGAGTCTAGGCTGC+TGG | 0.526710 | 3_3:-65527543 | None:intergenic |
| TAGAAAGAAAACTTCTTCAT+GGG | 0.536460 | 3_3:+65527710 | Msa0465180:intron |
| TAGGTTGAATTACCCATTTG+CGG | 0.539206 | 3_3:-65527592 | None:intergenic |
| GGGCCCATTGGGGAGAGTCT+AGG | 0.539319 | 3_3:-65527550 | None:intergenic |
| AACTTCTTCATGGGAAGAAG+CGG | 0.539516 | 3_3:+65527719 | Msa0465180:CDS |
| GCGTCTTGAGAAAGGGAAAG+AGG | 0.542494 | 3_3:+65528197 | Msa0465180:CDS |
| ACAAAGGAGGATCTTCTCCA+TGG | 0.556428 | 3_3:+65527763 | Msa0465180:CDS |
| GGTGGCAGTGGCGATCGTGA+AGG | 0.562917 | 3_3:-65527571 | None:intergenic |
| TAGATACAATAGACCTCAAG+TGG | 0.578362 | 3_3:+65527977 | Msa0465180:CDS |
| AAAATACCTCAAACATGATG+AGG | 0.584901 | 3_3:-65527017 | None:intergenic |
| AAAAGTAGAAAGCACAAAGG+AGG | 0.607683 | 3_3:+65527750 | Msa0465180:CDS |
| CAAAGGAGGATCTTCTCCAT+GGG | 0.608293 | 3_3:+65527764 | Msa0465180:CDS |
| GCTTCTTTATGATGCAAAGA+CGG | 0.618292 | 3_3:+65527828 | Msa0465180:CDS |
| AAACAAACGCGATCAGCGAG+TGG | 0.619578 | 3_3:-65526941 | None:intergenic |
| GTCTCCAGTTCTACTTGATG+AGG | 0.634495 | 3_3:+65527999 | Msa0465180:CDS |
| CTCAAACATGATGAGGATGA+GGG | 0.642638 | 3_3:-65527010 | None:intergenic |
| TCTTTATGATGCAAAGACGG+TGG | 0.655925 | 3_3:+65527831 | Msa0465180:CDS |
| AGCATGCAGAGGAAAAGAAG+CGG | 0.669158 | 3_3:+65528148 | Msa0465180:CDS |
| TCTTCATGGGAAGAAGCGGA+AGG | 0.671311 | 3_3:+65527723 | Msa0465180:CDS |
| CGATCGTGAAGGGCCCATTG+GGG | 0.671685 | 3_3:-65527560 | None:intergenic |
| TCTCCATGGGAAGAAGCCAA+AGG | 0.672590 | 3_3:+65527777 | Msa0465180:CDS |
| GTAGAACTGGAGACCACTTG+AGG | 0.676015 | 3_3:-65527990 | None:intergenic |
| ACTCTTCAAGAAGCATGCAG+AGG | 0.682031 | 3_3:+65528137 | Msa0465180:CDS |
| ATGCAGAGGAAAAGAAGCGG+TGG | 0.691365 | 3_3:+65528151 | Msa0465180:CDS |
| GTTGAATTACCCATTTGCGG+TGG | 0.691582 | 3_3:-65527589 | None:intergenic |
| AAACATGATGAGGATGAGGG+AGG | 0.717286 | 3_3:-65527007 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAACAATAAAATG+AGG | - | chr3_3:65527456-65527475 | None:intergenic | 10.0% |
| !!! | TGTTATTATTTTTATATTTG+TGG | + | chr3_3:65527464-65527483 | Msa0465180:intron | 10.0% |
| !! | AAAATAATAACAATAAAATG+AGG | - | chr3_3:65527456-65527475 | None:intergenic | 10.0% |
| !!! | TGTTATTATTTTTATATTTG+TGG | + | chr3_3:65527464-65527483 | Msa0465180:intron | 10.0% |
| !!! | GAAATAGAATGTTTTTTTTA+TGG | + | chr3_3:65527163-65527182 | Msa0465180:intron | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | chr3_3:65527493-65527512 | None:intergenic | 15.0% |
| !!! | GAAATAGAATGTTTTTTTTA+TGG | + | chr3_3:65527163-65527182 | Msa0465180:intron | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | chr3_3:65527493-65527512 | None:intergenic | 15.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | - | chr3_3:65527047-65527066 | None:intergenic | 20.0% |
| !! | AAGAATACTTGTAAGAAAAT+AGG | - | chr3_3:65527620-65527639 | None:intergenic | 20.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | - | chr3_3:65527047-65527066 | None:intergenic | 20.0% |
| !! | AAGAATACTTGTAAGAAAAT+AGG | - | chr3_3:65527620-65527639 | None:intergenic | 20.0% |
| ! | GCAAACTATTGAAAAAAAGT+AGG | - | chr3_3:65526915-65526934 | None:intergenic | 25.0% |
| ! | TTGAATCTATTATGTCTGTT+TGG | + | chr3_3:65527072-65527091 | Msa0465180:intron | 25.0% |
| !! | AAAAAAATCAGTGTAATGGA+AGG | - | chr3_3:65527196-65527215 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAATCAGTGTAA+TGG | - | chr3_3:65527200-65527219 | None:intergenic | 25.0% |
| !! | TTCTCTTATTTGTGAGATTA+GGG | + | chr3_3:65527278-65527297 | Msa0465180:intron | 25.0% |
| !! | TTTGCAAAGTTTTTGTTGAT+TGG | + | chr3_3:65527381-65527400 | Msa0465180:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | chr3_3:65527447-65527466 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | + | chr3_3:65527499-65527518 | Msa0465180:intron | 25.0% |
| ! | ACTTGTAAGAAAATAGGATT+AGG | - | chr3_3:65527614-65527633 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCA+TGG | + | chr3_3:65527709-65527728 | Msa0465180:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCAT+GGG | + | chr3_3:65527710-65527729 | Msa0465180:intron | 25.0% |
| ! | GCAAACTATTGAAAAAAAGT+AGG | - | chr3_3:65526915-65526934 | None:intergenic | 25.0% |
| ! | TTGAATCTATTATGTCTGTT+TGG | + | chr3_3:65527072-65527091 | Msa0465180:intron | 25.0% |
| !! | AAAAAAATCAGTGTAATGGA+AGG | - | chr3_3:65527196-65527215 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAATCAGTGTAA+TGG | - | chr3_3:65527200-65527219 | None:intergenic | 25.0% |
| !! | TTCTCTTATTTGTGAGATTA+GGG | + | chr3_3:65527278-65527297 | Msa0465180:intron | 25.0% |
| !! | TTTGCAAAGTTTTTGTTGAT+TGG | + | chr3_3:65527381-65527400 | Msa0465180:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | chr3_3:65527447-65527466 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | + | chr3_3:65527499-65527518 | Msa0465180:intron | 25.0% |
| ! | ACTTGTAAGAAAATAGGATT+AGG | - | chr3_3:65527614-65527633 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCA+TGG | + | chr3_3:65527709-65527728 | Msa0465180:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCAT+GGG | + | chr3_3:65527710-65527729 | Msa0465180:intron | 25.0% |
| AAAATACCTCAAACATGATG+AGG | - | chr3_3:65527020-65527039 | None:intergenic | 30.0% | |
| ! | TCAGATTTGTTTGTGAGATT+AGG | + | chr3_3:65527106-65527125 | Msa0465180:intron | 30.0% |
| ! | CAGATTTGTTTGTGAGATTA+GGG | + | chr3_3:65527107-65527126 | Msa0465180:intron | 30.0% |
| TCTCACAAATAAGAGAAGAT+TGG | - | chr3_3:65527275-65527294 | None:intergenic | 30.0% | |
| ! | CTTCTCTTATTTGTGAGATT+AGG | + | chr3_3:65527277-65527296 | Msa0465180:intron | 30.0% |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | + | chr3_3:65527297-65527316 | Msa0465180:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | + | chr3_3:65527298-65527317 | Msa0465180:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | + | chr3_3:65527299-65527318 | Msa0465180:intron | 30.0% |
| ! | GGGATTCCAATTTTTGAATT+GGG | + | chr3_3:65527319-65527338 | Msa0465180:intron | 30.0% |
| ! | GGATTCCAATTTTTGAATTG+GGG | + | chr3_3:65527320-65527339 | Msa0465180:intron | 30.0% |
| CAAATAATAACTTCACGCTT+TGG | + | chr3_3:65527663-65527682 | Msa0465180:intron | 30.0% | |
| CAAAAAGTAGAAACTACTGA+TGG | + | chr3_3:65527802-65527821 | Msa0465180:CDS | 30.0% | |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | + | chr3_3:65527921-65527940 | Msa0465180:intron | 30.0% |
| AAAATACCTCAAACATGATG+AGG | - | chr3_3:65527020-65527039 | None:intergenic | 30.0% | |
| ! | TCAGATTTGTTTGTGAGATT+AGG | + | chr3_3:65527106-65527125 | Msa0465180:intron | 30.0% |
| ! | CAGATTTGTTTGTGAGATTA+GGG | + | chr3_3:65527107-65527126 | Msa0465180:intron | 30.0% |
| TCTCACAAATAAGAGAAGAT+TGG | - | chr3_3:65527275-65527294 | None:intergenic | 30.0% | |
| ! | CTTCTCTTATTTGTGAGATT+AGG | + | chr3_3:65527277-65527296 | Msa0465180:intron | 30.0% |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | + | chr3_3:65527297-65527316 | Msa0465180:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | + | chr3_3:65527298-65527317 | Msa0465180:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | + | chr3_3:65527299-65527318 | Msa0465180:intron | 30.0% |
| ! | GGGATTCCAATTTTTGAATT+GGG | + | chr3_3:65527319-65527338 | Msa0465180:intron | 30.0% |
| ! | GGATTCCAATTTTTGAATTG+GGG | + | chr3_3:65527320-65527339 | Msa0465180:intron | 30.0% |
| CAAATAATAACTTCACGCTT+TGG | + | chr3_3:65527663-65527682 | Msa0465180:intron | 30.0% | |
| CAAAAAGTAGAAACTACTGA+TGG | + | chr3_3:65527802-65527821 | Msa0465180:CDS | 30.0% | |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | + | chr3_3:65527921-65527940 | Msa0465180:intron | 30.0% |
| TCGTTGTCTTCATTCTTCAT+TGG | + | chr3_3:65526975-65526994 | Msa0465180:five_prime_UTR | 35.0% | |
| ! | GGGGATTCCAATTTTTGAAT+TGG | + | chr3_3:65527318-65527337 | Msa0465180:intron | 35.0% |
| GGAATCCCCAATTCAAAAAT+TGG | - | chr3_3:65527328-65527347 | None:intergenic | 35.0% | |
| CAGATTGACACACACAAAAT+TGG | - | chr3_3:65527349-65527368 | None:intergenic | 35.0% | |
| CTCTGTTGGAATTTATTCGA+AGG | + | chr3_3:65527513-65527532 | Msa0465180:intron | 35.0% | |
| ! | TAGGTTGAATTACCCATTTG+CGG | - | chr3_3:65527595-65527614 | None:intergenic | 35.0% |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | + | chr3_3:65527747-65527766 | Msa0465180:CDS | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | + | chr3_3:65527750-65527769 | Msa0465180:CDS | 35.0% |
| !!! | GTTTCTACTTTTTGCTCCTT+TGG | - | chr3_3:65527796-65527815 | None:intergenic | 35.0% |
| GCTTCTTTATGATGCAAAGA+CGG | + | chr3_3:65527828-65527847 | Msa0465180:CDS | 35.0% | |
| GAAGAAACAAACATAAGCTG+AGG | - | chr3_3:65527909-65527928 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | + | chr3_3:65527977-65527996 | Msa0465180:CDS | 35.0% | |
| TTTCTAACAGCATGCATACT+TGG | + | chr3_3:65528092-65528111 | Msa0465180:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | chr3_3:65528190-65528209 | Msa0465180:CDS | 35.0% |
| TCGTTGTCTTCATTCTTCAT+TGG | + | chr3_3:65526975-65526994 | Msa0465180:five_prime_UTR | 35.0% | |
| ! | GGGGATTCCAATTTTTGAAT+TGG | + | chr3_3:65527318-65527337 | Msa0465180:intron | 35.0% |
| GGAATCCCCAATTCAAAAAT+TGG | - | chr3_3:65527328-65527347 | None:intergenic | 35.0% | |
| CAGATTGACACACACAAAAT+TGG | - | chr3_3:65527349-65527368 | None:intergenic | 35.0% | |
| CTCTGTTGGAATTTATTCGA+AGG | + | chr3_3:65527513-65527532 | Msa0465180:intron | 35.0% | |
| ! | TAGGTTGAATTACCCATTTG+CGG | - | chr3_3:65527595-65527614 | None:intergenic | 35.0% |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | + | chr3_3:65527747-65527766 | Msa0465180:CDS | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | + | chr3_3:65527750-65527769 | Msa0465180:CDS | 35.0% |
| !!! | GTTTCTACTTTTTGCTCCTT+TGG | - | chr3_3:65527796-65527815 | None:intergenic | 35.0% |
| GCTTCTTTATGATGCAAAGA+CGG | + | chr3_3:65527828-65527847 | Msa0465180:CDS | 35.0% | |
| GAAGAAACAAACATAAGCTG+AGG | - | chr3_3:65527909-65527928 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | + | chr3_3:65527977-65527996 | Msa0465180:CDS | 35.0% | |
| TTTCTAACAGCATGCATACT+TGG | + | chr3_3:65528092-65528111 | Msa0465180:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | chr3_3:65528190-65528209 | Msa0465180:CDS | 35.0% |
| CTCAAACATGATGAGGATGA+GGG | - | chr3_3:65527013-65527032 | None:intergenic | 40.0% | |
| ! | CTGTTCTGTGTTGTGTTGAT+TGG | + | chr3_3:65527242-65527261 | Msa0465180:intron | 40.0% |
| AACTTCTTCATGGGAAGAAG+CGG | + | chr3_3:65527719-65527738 | Msa0465180:CDS | 40.0% | |
| TCTTTATGATGCAAAGACGG+TGG | + | chr3_3:65527831-65527850 | Msa0465180:CDS | 40.0% | |
| CATACTTGGAGCATGAGAAA+AGG | + | chr3_3:65528106-65528125 | Msa0465180:CDS | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | chr3_3:65528189-65528208 | Msa0465180:CDS | 40.0% |
| CTCAAACATGATGAGGATGA+GGG | - | chr3_3:65527013-65527032 | None:intergenic | 40.0% | |
| ! | CTGTTCTGTGTTGTGTTGAT+TGG | + | chr3_3:65527242-65527261 | Msa0465180:intron | 40.0% |
| AACTTCTTCATGGGAAGAAG+CGG | + | chr3_3:65527719-65527738 | Msa0465180:CDS | 40.0% | |
| TCTTTATGATGCAAAGACGG+TGG | + | chr3_3:65527831-65527850 | Msa0465180:CDS | 40.0% | |
| CATACTTGGAGCATGAGAAA+AGG | + | chr3_3:65528106-65528125 | Msa0465180:CDS | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | chr3_3:65528189-65528208 | Msa0465180:CDS | 40.0% |
| AAACATGATGAGGATGAGGG+AGG | - | chr3_3:65527010-65527029 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGATG+AGG | - | chr3_3:65527014-65527033 | None:intergenic | 45.0% | |
| CCTCATCCTCATCATGTTTG+AGG | + | chr3_3:65527011-65527030 | Msa0465180:exon | 45.0% | |
| GTTGAATTACCCATTTGCGG+TGG | - | chr3_3:65527592-65527611 | None:intergenic | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | + | chr3_3:65527763-65527782 | Msa0465180:CDS | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | + | chr3_3:65527764-65527783 | Msa0465180:CDS | 45.0% | |
| ! | CTCTCTCTGCTGTTTGCATT+TGG | + | chr3_3:65527875-65527894 | Msa0465180:intron | 45.0% |
| GTCTCCAGTTCTACTTGATG+AGG | + | chr3_3:65527999-65528018 | Msa0465180:CDS | 45.0% | |
| CTTGCCTCATCAAGTAGAAC+TGG | - | chr3_3:65528006-65528025 | None:intergenic | 45.0% | |
| ! | ACTCTTCAAGAAGCATGCAG+AGG | + | chr3_3:65528137-65528156 | Msa0465180:CDS | 45.0% |
| AGCATGCAGAGGAAAAGAAG+CGG | + | chr3_3:65528148-65528167 | Msa0465180:CDS | 45.0% | |
| AAAGAGGAGCTGTTGCTGAT+AGG | + | chr3_3:65528213-65528232 | Msa0465180:CDS | 45.0% | |
| AAACATGATGAGGATGAGGG+AGG | - | chr3_3:65527010-65527029 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGATG+AGG | - | chr3_3:65527014-65527033 | None:intergenic | 45.0% | |
| CCTCATCCTCATCATGTTTG+AGG | + | chr3_3:65527011-65527030 | Msa0465180:exon | 45.0% | |
| GTTGAATTACCCATTTGCGG+TGG | - | chr3_3:65527592-65527611 | None:intergenic | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | + | chr3_3:65527763-65527782 | Msa0465180:CDS | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | + | chr3_3:65527764-65527783 | Msa0465180:CDS | 45.0% | |
| ! | CTCTCTCTGCTGTTTGCATT+TGG | + | chr3_3:65527875-65527894 | Msa0465180:intron | 45.0% |
| GTCTCCAGTTCTACTTGATG+AGG | + | chr3_3:65527999-65528018 | Msa0465180:CDS | 45.0% | |
| CTTGCCTCATCAAGTAGAAC+TGG | - | chr3_3:65528006-65528025 | None:intergenic | 45.0% | |
| ! | ACTCTTCAAGAAGCATGCAG+AGG | + | chr3_3:65528137-65528156 | Msa0465180:CDS | 45.0% |
| AGCATGCAGAGGAAAAGAAG+CGG | + | chr3_3:65528148-65528167 | Msa0465180:CDS | 45.0% | |
| AAAGAGGAGCTGTTGCTGAT+AGG | + | chr3_3:65528213-65528232 | Msa0465180:CDS | 45.0% | |
| AAACAAACGCGATCAGCGAG+TGG | - | chr3_3:65526944-65526963 | None:intergenic | 50.0% | |
| TCTTCATGGGAAGAAGCGGA+AGG | + | chr3_3:65527723-65527742 | Msa0465180:CDS | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | chr3_3:65527777-65527796 | Msa0465180:CDS | 50.0% | |
| GTAGAACTGGAGACCACTTG+AGG | - | chr3_3:65527993-65528012 | None:intergenic | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | + | chr3_3:65528151-65528170 | Msa0465180:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | chr3_3:65528197-65528216 | Msa0465180:CDS | 50.0% | |
| AAACAAACGCGATCAGCGAG+TGG | - | chr3_3:65526944-65526963 | None:intergenic | 50.0% | |
| TCTTCATGGGAAGAAGCGGA+AGG | + | chr3_3:65527723-65527742 | Msa0465180:CDS | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | chr3_3:65527777-65527796 | Msa0465180:CDS | 50.0% | |
| GTAGAACTGGAGACCACTTG+AGG | - | chr3_3:65527993-65528012 | None:intergenic | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | + | chr3_3:65528151-65528170 | Msa0465180:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | chr3_3:65528197-65528216 | Msa0465180:CDS | 50.0% | |
| CGCGATCAGCGAGTGGATAT+CGG | - | chr3_3:65526937-65526956 | None:intergenic | 55.0% | |
| CAGCCTAGACTCTCCCCAAT+GGG | + | chr3_3:65527547-65527566 | Msa0465180:CDS | 55.0% | |
| TTACCCATTTGCGGTGGCAG+TGG | - | chr3_3:65527586-65527605 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | chr3_3:65527783-65527802 | None:intergenic | 55.0% |
| CGCGATCAGCGAGTGGATAT+CGG | - | chr3_3:65526937-65526956 | None:intergenic | 55.0% | |
| CAGCCTAGACTCTCCCCAAT+GGG | + | chr3_3:65527547-65527566 | Msa0465180:CDS | 55.0% | |
| TTACCCATTTGCGGTGGCAG+TGG | - | chr3_3:65527586-65527605 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | chr3_3:65527783-65527802 | None:intergenic | 55.0% |
| TTGGGGAGAGTCTAGGCTGC+TGG | - | chr3_3:65527546-65527565 | None:intergenic | 60.0% | |
| GCAGCCTAGACTCTCCCCAA+TGG | + | chr3_3:65527546-65527565 | Msa0465180:CDS | 60.0% | |
| CGATCGTGAAGGGCCCATTG+GGG | - | chr3_3:65527563-65527582 | None:intergenic | 60.0% | |
| GCGATCGTGAAGGGCCCATT+GGG | - | chr3_3:65527564-65527583 | None:intergenic | 60.0% | |
| GTGGCAGTGGCGATCGTGAA+GGG | - | chr3_3:65527573-65527592 | None:intergenic | 60.0% | |
| ATCGCCACTGCCACCGCAAA+TGG | + | chr3_3:65527579-65527598 | Msa0465180:CDS | 60.0% | |
| TCGCCACTGCCACCGCAAAT+GGG | + | chr3_3:65527580-65527599 | Msa0465180:CDS | 60.0% | |
| TTGGGGAGAGTCTAGGCTGC+TGG | - | chr3_3:65527546-65527565 | None:intergenic | 60.0% | |
| GCAGCCTAGACTCTCCCCAA+TGG | + | chr3_3:65527546-65527565 | Msa0465180:CDS | 60.0% | |
| CGATCGTGAAGGGCCCATTG+GGG | - | chr3_3:65527563-65527582 | None:intergenic | 60.0% | |
| GCGATCGTGAAGGGCCCATT+GGG | - | chr3_3:65527564-65527583 | None:intergenic | 60.0% | |
| GTGGCAGTGGCGATCGTGAA+GGG | - | chr3_3:65527573-65527592 | None:intergenic | 60.0% | |
| ATCGCCACTGCCACCGCAAA+TGG | + | chr3_3:65527579-65527598 | Msa0465180:CDS | 60.0% | |
| TCGCCACTGCCACCGCAAAT+GGG | + | chr3_3:65527580-65527599 | Msa0465180:CDS | 60.0% | |
| GGGCCCATTGGGGAGAGTCT+AGG | - | chr3_3:65527553-65527572 | None:intergenic | 65.0% | |
| GGCGATCGTGAAGGGCCCAT+TGG | - | chr3_3:65527565-65527584 | None:intergenic | 65.0% | |
| GGTGGCAGTGGCGATCGTGA+AGG | - | chr3_3:65527574-65527593 | None:intergenic | 65.0% | |
| GGGCCCATTGGGGAGAGTCT+AGG | - | chr3_3:65527553-65527572 | None:intergenic | 65.0% | |
| GGCGATCGTGAAGGGCCCAT+TGG | - | chr3_3:65527565-65527584 | None:intergenic | 65.0% | |
| GGTGGCAGTGGCGATCGTGA+AGG | - | chr3_3:65527574-65527593 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 65526910 | 65528239 | 65526910 | ID=Msa0465180;Name=Msa0465180 |
| chr3_3 | mRNA | 65526910 | 65528239 | 65526910 | ID=Msa0465180-mRNA-1;Parent=Msa0465180;Name=Msa0465180-mRNA-1;_AED=0.43;_eAED=0.43;_QI=114|0.5|0.4|1|1|1|5|0|140 |
| chr3_3 | exon | 65526910 | 65527032 | 65526910 | ID=Msa0465180-mRNA-1:exon:14568;Parent=Msa0465180-mRNA-1 |
| chr3_3 | exon | 65527535 | 65527601 | 65527535 | ID=Msa0465180-mRNA-1:exon:14569;Parent=Msa0465180-mRNA-1 |
| chr3_3 | exon | 65527713 | 65527856 | 65527713 | ID=Msa0465180-mRNA-1:exon:14570;Parent=Msa0465180-mRNA-1 |
| chr3_3 | exon | 65527956 | 65528020 | 65527956 | ID=Msa0465180-mRNA-1:exon:14571;Parent=Msa0465180-mRNA-1 |
| chr3_3 | exon | 65528102 | 65528239 | 65528102 | ID=Msa0465180-mRNA-1:exon:14572;Parent=Msa0465180-mRNA-1 |
| chr3_3 | five_prime_UTR | 65526910 | 65527023 | 65526910 | ID=Msa0465180-mRNA-1:five_prime_utr;Parent=Msa0465180-mRNA-1 |
| chr3_3 | CDS | 65527024 | 65527032 | 65527024 | ID=Msa0465180-mRNA-1:cds;Parent=Msa0465180-mRNA-1 |
| chr3_3 | CDS | 65527535 | 65527601 | 65527535 | ID=Msa0465180-mRNA-1:cds;Parent=Msa0465180-mRNA-1 |
| chr3_3 | CDS | 65527713 | 65527856 | 65527713 | ID=Msa0465180-mRNA-1:cds;Parent=Msa0465180-mRNA-1 |
| chr3_3 | CDS | 65527956 | 65528020 | 65527956 | ID=Msa0465180-mRNA-1:cds;Parent=Msa0465180-mRNA-1 |
| chr3_3 | CDS | 65528102 | 65528239 | 65528102 | ID=Msa0465180-mRNA-1:cds;Parent=Msa0465180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
