Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398610 | AEX20345.1 | 68.936 | 470 | 73 | 4 | 187 | 596 | 3 | 459 | 0.0 | 628 |
| Msa1398610 | AEX20345.1 | 76.190 | 126 | 13 | 2 | 26 | 134 | 340 | 465 | 1.30e-44 | 176 |
| Msa1398610 | AEX20345.1 | 77.966 | 59 | 9 | 1 | 11 | 69 | 269 | 323 | 6.13e-14 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398610 | sp|Q6XPT5|MCA7_ARATH | 30.675 | 163 | 108 | 3 | 194 | 353 | 7 | 167 | 3.11e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398610 | H2EIY5 | 68.936 | 470 | 73 | 4 | 187 | 596 | 3 | 459 | 0.0 | 628 |
| Msa1398610 | H2EIY5 | 76.190 | 126 | 13 | 2 | 26 | 134 | 340 | 465 | 6.22e-45 | 176 |
| Msa1398610 | H2EIY5 | 77.966 | 59 | 9 | 1 | 11 | 69 | 269 | 323 | 2.93e-14 | 87.0 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa1398610 | 0.875667 | 2.572278e-68 | -8.615850e-47 |
| Msa0092550 | Msa1398610 | 0.856813 | 2.496402e-62 | -8.615850e-47 |
| Msa0092590 | Msa1398610 | 0.846447 | 2.159562e-59 | -8.615850e-47 |
| Msa0701010 | Msa1398610 | 0.806160 | 9.413972e-50 | -8.615850e-47 |
| Msa0768290 | Msa1398610 | 0.813526 | 2.447621e-51 | -8.615850e-47 |
| Msa0768370 | Msa1398610 | 0.801324 | 9.503257e-49 | -8.615850e-47 |
| Msa0178970 | Msa1398610 | 0.807149 | 5.820383e-50 | -8.615850e-47 |
| Msa0393010 | Msa1398610 | 0.893369 | 6.704108e-75 | -8.615850e-47 |
| Msa0419240 | Msa1398610 | 0.821395 | 4.130351e-53 | -8.615850e-47 |
| Msa0424320 | Msa1398610 | 0.807793 | 4.250062e-50 | -8.615850e-47 |
| Msa0465150 | Msa1398610 | 0.979198 | 1.913214e-147 | -8.615850e-47 |
| Msa0465180 | Msa1398610 | 0.973484 | 1.658521e-136 | -8.615850e-47 |
| Msa0465200 | Msa1398610 | 0.965793 | 4.553757e-125 | -8.615850e-47 |
| Msa0523940 | Msa1398610 | 0.836190 | 1.081816e-56 | -8.615850e-47 |
| Msa0562440 | Msa1398610 | 0.801119 | 1.046568e-48 | -8.615850e-47 |
| Msa0877250 | Msa1398610 | 0.807501 | 4.902191e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398610 | MtrunA17_Chr3g0143041 | 78.912 | 147 | 22 | 3 | 455 | 601 | 11 | 148 | 8.02e-67 | 215 |
| Msa1398610 | MtrunA17_Chr3g0143041 | 76.552 | 145 | 17 | 2 | 1 | 128 | 1 | 145 | 1.78e-64 | 209 |
| Msa1398610 | MtrunA17_Chr3g0143031 | 78.912 | 147 | 22 | 3 | 455 | 601 | 11 | 148 | 8.02e-67 | 215 |
| Msa1398610 | MtrunA17_Chr3g0143031 | 76.552 | 145 | 17 | 2 | 1 | 128 | 1 | 145 | 1.78e-64 | 209 |
| Msa1398610 | MtrunA17_Chr3g0142551 | 75.000 | 116 | 23 | 1 | 470 | 585 | 1 | 110 | 1.69e-51 | 173 |
| Msa1398610 | MtrunA17_Chr3g0142551 | 76.364 | 110 | 9 | 2 | 25 | 117 | 1 | 110 | 4.94e-45 | 155 |
| Msa1398610 | MtrunA17_Chr2g0309701 | 31.293 | 147 | 96 | 3 | 194 | 337 | 10 | 154 | 7.08e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398610 | AT1G79310.1 | 30.675 | 163 | 108 | 3 | 194 | 353 | 7 | 167 | 3.16e-14 | 75.5 |
| Msa1398610 | AT1G79340.1 | 30.201 | 149 | 99 | 3 | 192 | 337 | 5 | 151 | 2.38e-11 | 66.6 |
Find 162 sgRNAs with CRISPR-Local
Find 598 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGACTGTTGTAATTC+TGG | 0.163467 | tig0022273:+9719 | Msa1398610:CDS |
| GGAAAATATCAAGGTGTTTC+AGG | 0.207709 | tig0022273:+9305 | Msa1398610:CDS |
| TTGGAATTTAATATTGTATC+TGG | 0.232262 | tig0022273:+10097 | Msa1398610:CDS |
| CTTTCAACTTTCTGCTCCTT+TGG | 0.234586 | tig0022273:-10362 | None:intergenic |
| CATGTCTGGTCATGGATTCT+TGG | 0.236373 | tig0022273:+9431 | Msa1398610:CDS |
| GATTTATAGACACTCCTTCT+TGG | 0.287132 | tig0022273:-9694 | None:intergenic |
| CCTGTCTGTGTTGCGGCAGC+AGG | 0.289795 | tig0022273:+6656 | Msa1398610:CDS |
| ACCGGGTATTCAAATTCTTT+TGG | 0.291404 | tig0022273:-10419 | None:intergenic |
| ATCGCCACTGCCACCGCAAA+TGG | 0.308037 | tig0022273:+3840 | Msa1398610:CDS |
| ATCAGCATCCTTGTTGGTTA+TGG | 0.312811 | tig0022273:+9471 | Msa1398610:CDS |
| TGCAAGTTCTCACCGAGTTT+GGG | 0.317499 | tig0022273:+9936 | Msa1398610:CDS |
| GTGCAAGTTCTCACCGAGTT+TGG | 0.325486 | tig0022273:+9935 | Msa1398610:CDS |
| GGAAGAAATCACGGTTTATC+TGG | 0.340742 | tig0022273:+9179 | Msa1398610:CDS |
| AGTTGGTTCTGGTTCGTGTT+TGG | 0.341498 | tig0022273:+6608 | Msa1398610:intron |
| AAACTTCGATATAATGATAA+TGG | 0.343523 | tig0022273:+9353 | Msa1398610:CDS |
| GCGGTTGGGAGGTGTCCATT+GGG | 0.345797 | tig0022273:-10126 | None:intergenic |
| GCGGCGGCGACGGCGGCGGT+TGG | 0.349269 | tig0022273:-10141 | None:intergenic |
| GTTGGTTCTGGTTCGTGTTT+GGG | 0.366134 | tig0022273:+6609 | Msa1398610:intron |
| CGGCGGCGACGGCGGCGGTT+GGG | 0.367039 | tig0022273:-10140 | None:intergenic |
| TTTCTAACAGCAAGCATACT+TGG | 0.368412 | tig0022273:+10705 | Msa1398610:intron |
| GCCGCCGTCGCCGCCGCAAA+TGG | 0.372217 | tig0022273:+10147 | Msa1398610:CDS |
| GCGATCGTGAAGGGCCCATT+GGG | 0.376549 | tig0022273:-3822 | None:intergenic |
| GGCGGTTGGGAGGTGTCCAT+TGG | 0.377647 | tig0022273:-10127 | None:intergenic |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.377659 | tig0022273:-10349 | None:intergenic |
| CCTCATCCTCATCATGTTTG+AGG | 0.378174 | tig0022273:+3270 | Msa1398610:exon |
| TCGTTGTCTTCATTCTTCAT+TGG | 0.383297 | tig0022273:+3234 | Msa1398610:five_prime_UTR |
| TTCAACGTCTCTTCGTAAAC+CGG | 0.384406 | tig0022273:-10437 | None:intergenic |
| TTTCTAACAGCATGCATACT+TGG | 0.388120 | tig0022273:+4381 | Msa1398610:intron |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.393602 | tig0022273:-4041 | None:intergenic |
| CCCCAAGGGGTGACCTTTGT+GGG | 0.395961 | tig0022273:-9816 | None:intergenic |
| TAAGATCAAACCTTTGAAAC+TGG | 0.396504 | tig0022273:+9961 | Msa1398610:CDS |
| CGCGATCAGCGAGTGGATAT+CGG | 0.396943 | tig0022273:-3193 | None:intergenic |
| GGTTCGTGTTTGGGTGCTAC+AGG | 0.404433 | tig0022273:+6618 | Msa1398610:CDS |
| ATAGAAAGAAAACTTCTTCA+TGG | 0.406125 | tig0022273:+3970 | Msa1398610:intron |
| CTCGCCTCATCAGGTAGAAC+TGG | 0.406533 | tig0022273:-10616 | None:intergenic |
| TCCCCAAGGGGTGACCTTTG+TGG | 0.416052 | tig0022273:-9817 | None:intergenic |
| TCCCACAAAGGTCACCCCTT+GGG | 0.419902 | tig0022273:+9815 | Msa1398610:CDS |
| GCTACAGGAGCGATGCTGTC+TGG | 0.425178 | tig0022273:+6633 | Msa1398610:CDS |
| AGACTTGGGATCAAAGTTAT+CGG | 0.427746 | tig0022273:+9895 | Msa1398610:CDS |
| TTTCAGGACGTTGTTGTAAA+GGG | 0.431657 | tig0022273:+9321 | Msa1398610:CDS |
| CCGCCGTCGCCGCCGCAAAT+GGG | 0.434409 | tig0022273:+10148 | Msa1398610:CDS |
| ATTTGCGGCGGCGACGGCGG+CGG | 0.445469 | tig0022273:-10145 | None:intergenic |
| AAAGAGGAGCTGTTGCTGAT+AGG | 0.450135 | tig0022273:+4502 | Msa1398610:CDS |
| TTGTTGGTTATGGTGAGGAC+GGG | 0.451207 | tig0022273:+9481 | Msa1398610:CDS |
| CGAACATTGTGGATTTAAAG+AGG | 0.452704 | tig0022273:+9284 | Msa1398610:CDS |
| CTAAGATCAGAACAGGAACC+AGG | 0.455410 | tig0022273:-9216 | None:intergenic |
| CTGTCTGTGTTGCGGCAGCA+GGG | 0.456117 | tig0022273:+6657 | Msa1398610:CDS |
| GTTTCAGGACGTTGTTGTAA+AGG | 0.461525 | tig0022273:+9320 | Msa1398610:CDS |
| AAAGAGGAGCTGTTACTGAT+AGG | 0.462033 | tig0022273:+10831 | Msa1398610:exon |
| GAGGGAGAGTTTCTTTATGA+TGG | 0.464401 | tig0022273:+10389 | Msa1398610:CDS |
| GGGGCTCCCCGCTTCATACT+TGG | 0.465017 | tig0022273:+9501 | Msa1398610:CDS |
| AGGTTGAGTTTACCCATTTG+CGG | 0.466017 | tig0022273:-10160 | None:intergenic |
| CCCATTTGCGGCGGCGACGG+CGG | 0.466443 | tig0022273:-10148 | None:intergenic |
| AACGGAATCAGCATCCTTGT+TGG | 0.477260 | tig0022273:+9465 | Msa1398610:CDS |
| TTTGGCTTCTTCCCATGGAT+AGG | 0.482517 | tig0022273:-10344 | None:intergenic |
| TCAGATCGCTACGGAATTGA+AGG | 0.484029 | tig0022273:+10021 | Msa1398610:CDS |
| ATCTGTTCCACCAGTTTCAA+AGG | 0.486649 | tig0022273:-9971 | None:intergenic |
| GGCGATCGTGAAGGGCCCAT+TGG | 0.490048 | tig0022273:-3823 | None:intergenic |
| TTACCCATTTGCGGCGGCGA+CGG | 0.492449 | tig0022273:-10151 | None:intergenic |
| CAGCCTAGACTCTCCCCAAT+GGG | 0.493581 | tig0022273:+3808 | Msa1398610:CDS |
| AATGGATCAGCTCTTTCAAA+TGG | 0.494203 | tig0022273:+9371 | Msa1398610:CDS |
| TTACCCATTTGCGGTGGCAG+TGG | 0.496798 | tig0022273:-3844 | None:intergenic |
| CAAAATGTAGAAAGCACAAA+GGG | 0.497061 | tig0022273:+10317 | Msa1398610:CDS |
| GCCAAAAGAATTTGAATACC+CGG | 0.499635 | tig0022273:+10418 | Msa1398610:CDS |
| CGGCGACGGCGGCGGTTGGG+AGG | 0.499742 | tig0022273:-10137 | None:intergenic |
| TCGCCACTGCCACCGCAAAT+GGG | 0.500247 | tig0022273:+3841 | Msa1398610:CDS |
| TTCTTGGACAAGAAGAGAAA+CGG | 0.501595 | tig0022273:+9447 | Msa1398610:CDS |
| CCTGCTGCCGCAACACAGAC+AGG | 0.503625 | tig0022273:-6656 | None:intergenic |
| CATACTTGGAGCATGAGAAA+AGG | 0.506185 | tig0022273:+10719 | Msa1398610:CDS |
| CTGGTTGTATTAACCTACCC+TGG | 0.509166 | tig0022273:+9198 | Msa1398610:CDS |
| CCTCAAACATGATGAGGATG+AGG | 0.511335 | tig0022273:-3270 | None:intergenic |
| AAATTTACCAAGTATGAAGC+GGG | 0.511628 | tig0022273:-9508 | None:intergenic |
| CATACTTGGAGCATGAGAAA+AGG | 0.512804 | tig0022273:+4395 | Msa1398610:CDS |
| CTTGTTGGTTATGGTGAGGA+CGG | 0.513523 | tig0022273:+9480 | Msa1398610:CDS |
| GTGGCAGTGGCGATCGTGAA+GGG | 0.513908 | tig0022273:-3831 | None:intergenic |
| TTGAGAAAGGGAAGGGAAAG+AGG | 0.517216 | tig0022273:+10815 | Msa1398610:CDS |
| TGTCTGTGTTGCGGCAGCAG+GGG | 0.518315 | tig0022273:+6658 | Msa1398610:CDS |
| GCAGCCTAGACTCTCCCCAA+TGG | 0.518335 | tig0022273:+3807 | Msa1398610:CDS |
| ACTGACAATCACAACACAAA+AGG | 0.518809 | tig0022273:-10075 | None:intergenic |
| TTTGTGTTGTGATTGTCAGT+TGG | 0.524134 | tig0022273:+10078 | Msa1398610:CDS |
| TTCCCACAAAGGTCACCCCT+TGG | 0.524483 | tig0022273:+9814 | Msa1398610:CDS |
| TTGGGGAGAGTCTAGGCTGC+TGG | 0.526710 | tig0022273:-3804 | None:intergenic |
| ACCGCATGTCATTCACGTAC+AGG | 0.530170 | tig0022273:+9848 | Msa1398610:CDS |
| GATCAAACCTTTGAAACTGG+TGG | 0.533811 | tig0022273:+9964 | Msa1398610:CDS |
| TAGAAAGAAAACTTCTTCAT+GGG | 0.536460 | tig0022273:+3971 | Msa1398610:intron |
| AACTTCTTCATGAGAAGAAG+CGG | 0.536690 | tig0022273:+10288 | Msa1398610:CDS |
| TAGGTTGAATTACCCATTTG+CGG | 0.539206 | tig0022273:-3853 | None:intergenic |
| GGGCCCATTGGGGAGAGTCT+AGG | 0.539319 | tig0022273:-3811 | None:intergenic |
| AACTTCTTCATGGGAAGAAG+CGG | 0.539516 | tig0022273:+3980 | Msa1398610:CDS |
| GAAGCACAAGTTGACTTTGA+AGG | 0.542314 | tig0022273:-9794 | None:intergenic |
| GCGTCTTGAGAAAGGGAAAG+AGG | 0.542494 | tig0022273:+4486 | Msa1398610:CDS |
| GCTCTTTCAAATGGCTAGGA+AGG | 0.543876 | tig0022273:+9380 | Msa1398610:CDS |
| TGCGGTAAATACCGTCCCCA+AGG | 0.544635 | tig0022273:-9831 | None:intergenic |
| GATCAAATTGATTTACAACC+TGG | 0.548767 | tig0022273:+10052 | Msa1398610:CDS |
| GAGAACTTGCACAAGTGCCC+AGG | 0.554885 | tig0022273:-9924 | None:intergenic |
| ACAAAGGAGGATCTTCTCCA+TGG | 0.556428 | tig0022273:+4024 | Msa1398610:CDS |
| ACCATGCTATGCTATGCTCT+TGG | 0.556857 | tig0022273:+10859 | Msa1398610:three_prime_UTR |
| CAGAAAGTTGAAAGCACTGA+GGG | 0.558826 | tig0022273:+10371 | Msa1398610:CDS |
| TACGGAATTGAAGGTGGGAA+TGG | 0.562702 | tig0022273:+10030 | Msa1398610:CDS |
| GGTGGCAGTGGCGATCGTGA+AGG | 0.562917 | tig0022273:-3832 | None:intergenic |
| AAATAATCAAGATCGTTGCT+TGG | 0.565855 | tig0022273:-9246 | None:intergenic |
| CCCACAAAGGTCACCCCTTG+GGG | 0.569868 | tig0022273:+9816 | Msa1398610:CDS |
| ATTTAAAGAGGAAAATATCA+AGG | 0.576556 | tig0022273:+9296 | Msa1398610:CDS |
| TAGATACAATAGACCTCAAG+TGG | 0.578362 | tig0022273:+4266 | Msa1398610:CDS |
| TCAACGTCTCTTCGTAAACC+GGG | 0.579217 | tig0022273:-10436 | None:intergenic |
| TAGATACAATAGACCTCAAG+TGG | 0.580845 | tig0022273:+10590 | Msa1398610:CDS |
| TCTCTATGATGCAAAGACGT+TGG | 0.584705 | tig0022273:+4092 | Msa1398610:CDS |
| AAAATACCTCAAACATGATG+AGG | 0.584901 | tig0022273:-3276 | None:intergenic |
| GCGGTAAATACCGTCCCCAA+GGG | 0.585381 | tig0022273:-9830 | None:intergenic |
| GTTTACGAAGAGACGTTGAA+AGG | 0.591927 | tig0022273:+10440 | Msa1398610:CDS |
| AAAATTTACCAAGTATGAAG+CGG | 0.593986 | tig0022273:-9509 | None:intergenic |
| CAATCACAACACAAAAGGCC+AGG | 0.594893 | tig0022273:-10070 | None:intergenic |
| GATCGCTACGGAATTGAAGG+TGG | 0.595976 | tig0022273:+10024 | Msa1398610:CDS |
| TGTTGGTTATGGTGAGGACG+GGG | 0.597630 | tig0022273:+9482 | Msa1398610:CDS |
| TGTATCTGGACTCTCCCCAA+TGG | 0.598950 | tig0022273:+10111 | Msa1398610:CDS |
| CATCCTTGTTGGTTATGGTG+AGG | 0.606343 | tig0022273:+9476 | Msa1398610:CDS |
| TCAACTTGTGCTTCCCACAA+AGG | 0.607010 | tig0022273:+9803 | Msa1398610:CDS |
| AAAAGTAGAAAGCACAAAGG+AGG | 0.607683 | tig0022273:+4011 | Msa1398610:CDS |
| CAAAGGAGGATCTTCTCCAT+GGG | 0.608293 | tig0022273:+4025 | Msa1398610:CDS |
| TAAGCAATATCCTAAAACTG+AGG | 0.613277 | tig0022273:+9763 | Msa1398610:CDS |
| AAACAAACGCGATCAGCGAG+TGG | 0.619578 | tig0022273:-3200 | None:intergenic |
| CAAAGGTCACCCCTTGGGGA+CGG | 0.620972 | tig0022273:+9820 | Msa1398610:CDS |
| ATCGCTACGGAATTGAAGGT+GGG | 0.624679 | tig0022273:+10025 | Msa1398610:CDS |
| CGGTTGGGAGGTGTCCATTG+GGG | 0.625154 | tig0022273:-10125 | None:intergenic |
| GCCAAGAGCATAGCATAGCA+TGG | 0.625974 | tig0022273:-10860 | None:intergenic |
| TGATAGGGAGGAAGAAATCA+CGG | 0.628484 | tig0022273:+9170 | Msa1398610:intron |
| CGTCCTCACCATAACCAACA+AGG | 0.629344 | tig0022273:-9479 | None:intergenic |
| GCACAAGTTGACTTTGAAGG+AGG | 0.634270 | tig0022273:-9791 | None:intergenic |
| AGAGCGTCTTGAGAAAGGGA+AGG | 0.635457 | tig0022273:+10807 | Msa1398610:CDS |
| AAATGCCTCATCGAACATTG+TGG | 0.636619 | tig0022273:+9273 | Msa1398610:CDS |
| TAAATCCACAATGTTCGATG+AGG | 0.640029 | tig0022273:-9278 | None:intergenic |
| GAGCGTCTTGAGAAAGGGAA+GGG | 0.642510 | tig0022273:+10808 | Msa1398610:CDS |
| CTCAAACATGATGAGGATGA+GGG | 0.642638 | tig0022273:-3269 | None:intergenic |
| ATCAGCTCTTTCAAATGGCT+AGG | 0.643553 | tig0022273:+9376 | Msa1398610:CDS |
| TTTGATCTTAGTCCCAAACT+CGG | 0.645054 | tig0022273:-9948 | None:intergenic |
| GCAAAATGTAGAAAGCACAA+AGG | 0.650373 | tig0022273:+10316 | Msa1398610:CDS |
| GTAGAACTGGACACCACTTG+AGG | 0.654086 | tig0022273:-10603 | None:intergenic |
| GTGTCCAGTTCTACCTGATG+AGG | 0.656713 | tig0022273:+10612 | Msa1398610:CDS |
| GAAGCAGAATCAGATCGCTA+CGG | 0.656805 | tig0022273:+10012 | Msa1398610:CDS |
| ATCAGAACAGGAACCAGGGT+AGG | 0.657902 | tig0022273:-9211 | None:intergenic |
| TGTCTGGCCTGTCTGTGTTG+CGG | 0.661891 | tig0022273:+6649 | Msa1398610:CDS |
| AAATGTAGAAAGCACAAAGG+GGG | 0.666895 | tig0022273:+10319 | Msa1398610:CDS |
| TCCTGTACGTGAATGACATG+CGG | 0.667707 | tig0022273:-9849 | None:intergenic |
| TAAGATCAGAACAGGAACCA+GGG | 0.668398 | tig0022273:-9215 | None:intergenic |
| AGCATGCAGAGGAAAAGAAG+CGG | 0.669158 | tig0022273:+4437 | Msa1398610:CDS |
| TCTTCATGGGAAGAAGCGGA+AGG | 0.671311 | tig0022273:+3984 | Msa1398610:CDS |
| CGATCGTGAAGGGCCCATTG+GGG | 0.671685 | tig0022273:-3821 | None:intergenic |
| TCTCCATGGGAAGAAGCCAA+AGG | 0.672590 | tig0022273:+4038 | Msa1398610:CDS |
| TCTTCATGAGAAGAAGCGGA+AGG | 0.675917 | tig0022273:+10292 | Msa1398610:CDS |
| GTAGAACTGGAGACCACTTG+AGG | 0.676015 | tig0022273:-4279 | None:intergenic |
| TATCCATGGGAAGAAGCCAA+AGG | 0.679810 | tig0022273:+10346 | Msa1398610:CDS |
| ACTCTTCAAGAAGCATGCAG+AGG | 0.682031 | tig0022273:+4426 | Msa1398610:CDS |
| TTGAGTTTACCCATTTGCGG+CGG | 0.683993 | tig0022273:-10157 | None:intergenic |
| CGGTAAATACCGTCCCCAAG+GGG | 0.688788 | tig0022273:-9829 | None:intergenic |
| ATGCAGAGGAAAAGAAGCGG+TGG | 0.691365 | tig0022273:+10764 | Msa1398610:CDS |
| ATGCAGAGGAAAAGAAGCGG+TGG | 0.691365 | tig0022273:+4440 | Msa1398610:CDS |
| GTTGAATTACCCATTTGCGG+TGG | 0.691582 | tig0022273:-3850 | None:intergenic |
| AGCATGCAGAGGAAAAGAAG+CGG | 0.699048 | tig0022273:+10761 | Msa1398610:CDS |
| AATTTACCAAGTATGAAGCG+GGG | 0.713224 | tig0022273:-9507 | None:intergenic |
| GCAGAAAGTTGAAAGCACTG+AGG | 0.716241 | tig0022273:+10370 | Msa1398610:CDS |
| AAACATGATGAGGATGAGGG+AGG | 0.717286 | tig0022273:-3266 | None:intergenic |
| AAAATGTAGAAAGCACAAAG+GGG | 0.728665 | tig0022273:+10318 | Msa1398610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATAACAATAAAATG+AGG | - | tig0022273:3717-3736 | None:intergenic | 10.0% |
| !!! | TGTTATTATTTTTATATTTG+TGG | + | tig0022273:3725-3744 | Msa1398610:intron | 10.0% |
| !! | TATATATAATTTGATTGATT+TGG | - | tig0022273:5297-5316 | None:intergenic | 10.0% |
| !! | TAAAAAATTAATAAAGTCTA+TGG | + | tig0022273:7019-7038 | Msa1398610:intron | 10.0% |
| !!! | GAAATAGAATGTTTTTTTTA+TGG | + | tig0022273:3424-3443 | Msa1398610:intron | 15.0% |
| !! | AACAACTAATTAATTAAAAG+TGG | - | tig0022273:3754-3773 | None:intergenic | 15.0% |
| !!! | TTCATGTTTTGTTTTTTTTT+TGG | + | tig0022273:4818-4837 | Msa1398610:intron | 15.0% |
| !!! | TTAATTTCTAGTTTTCATTT+TGG | - | tig0022273:7166-7185 | None:intergenic | 15.0% |
| !! | ATGAAAACTAGAAATTAATT+AGG | + | tig0022273:7168-7187 | Msa1398610:intron | 15.0% |
| !! | TGAAAACTAGAAATTAATTA+GGG | + | tig0022273:7169-7188 | Msa1398610:intron | 15.0% |
| !! | TTGAAAAGAAAAAAAAACAA+GGG | - | tig0022273:8011-8030 | None:intergenic | 15.0% |
| !! | TTTGAAAAGAAAAAAAAACA+AGG | - | tig0022273:8012-8031 | None:intergenic | 15.0% |
| !!! | CAAAATTAATAGTTTTGTAT+TGG | - | tig0022273:8241-8260 | None:intergenic | 15.0% |
| !!! | CAATACAAAACTATTAATTT+TGG | + | tig0022273:8239-8258 | Msa1398610:intron | 15.0% |
| !!! | GAAATAGAATGTTTTTTTTA+TGG | + | tig0022273:3424-3443 | Msa1398610:intron | 15.0% |
| !! | AAAACAAATTTAATTAGAGA+CGG | - | tig0022273:9635-9654 | None:intergenic | 15.0% |
| !! | AACTAGAATTAGAATTGAAA+AGG | - | tig0022273:3306-3325 | None:intergenic | 20.0% |
| !! | AAGAATACTTGTAAGAAAAT+AGG | - | tig0022273:3881-3900 | None:intergenic | 20.0% |
| !! | ATTATGTATTATTCAACATC+AGG | - | tig0022273:4691-4710 | None:intergenic | 20.0% |
| !! | TGAATAATACATAATAGTGT+TGG | + | tig0022273:4696-4715 | Msa1398610:intron | 20.0% |
| !!! | CTACAAACAATTTTATCAAT+AGG | + | tig0022273:4894-4913 | Msa1398610:intron | 20.0% |
| !! | TTGAGTTAGATTGTAAAAAA+TGG | + | tig0022273:5445-5464 | Msa1398610:intron | 20.0% |
| !! | TGAGTTAGATTGTAAAAAAT+GGG | + | tig0022273:5446-5465 | Msa1398610:intron | 20.0% |
| !! | CTGAATCAACAAATATTATT+AGG | - | tig0022273:6916-6935 | None:intergenic | 20.0% |
| !! | AAAATTAATAAAGTCTATGG+TGG | + | tig0022273:7022-7041 | Msa1398610:intron | 20.0% |
| !! | TCAGAGATTTATTTGAATAA+CGG | + | tig0022273:7095-7114 | Msa1398610:intron | 20.0% |
| !!! | AAAATTCATAACCAATCTTT+TGG | - | tig0022273:7611-7630 | None:intergenic | 20.0% |
| !! | ACATTAAATACATACCTTTA+GGG | - | tig0022273:7634-7653 | None:intergenic | 20.0% |
| !! | AACATTAAATACATACCTTT+AGG | - | tig0022273:7635-7654 | None:intergenic | 20.0% |
| !!! | TAAAGGTATGTATTTAATGT+TGG | + | tig0022273:7634-7653 | Msa1398610:intron | 20.0% |
| !! | ATTTACATACATAATGACAT+TGG | - | tig0022273:7684-7703 | None:intergenic | 20.0% |
| !! | GTGATCAAATTAAGTAATAA+AGG | + | tig0022273:7759-7778 | Msa1398610:intron | 20.0% |
| !! | TTTCACATTATTTCGTTAAT+TGG | - | tig0022273:7853-7872 | None:intergenic | 20.0% |
| !! | ATCCAATATAAAAGAGATTA+TGG | + | tig0022273:7884-7903 | Msa1398610:intron | 20.0% |
| !! | AACAAAGAATGAAAGTAAAA+GGG | - | tig0022273:8974-8993 | None:intergenic | 20.0% |
| !! | TAACAAAGAATGAAAGTAAA+AGG | - | tig0022273:8975-8994 | None:intergenic | 20.0% |
| !!! | GACATTTTAAAAGTTTTGTT+CGG | + | tig0022273:9117-9136 | Msa1398610:intron | 20.0% |
| !! | ATTTAAAGAGGAAAATATCA+AGG | + | tig0022273:9296-9315 | Msa1398610:CDS | 20.0% |
| !! | AAACTTCGATATAATGATAA+TGG | + | tig0022273:9353-9372 | Msa1398610:CDS | 20.0% |
| !! | AACACTACAAAAAAAAATGT+GGG | - | tig0022273:9584-9603 | None:intergenic | 20.0% |
| !! | AAACACTACAAAAAAAAATG+TGG | - | tig0022273:9585-9604 | None:intergenic | 20.0% |
| !! | TTGGAATTTAATATTGTATC+TGG | + | tig0022273:10097-10116 | Msa1398610:CDS | 20.0% |
| !! | TGAAATAATAAGAAACCAAA+GGG | - | tig0022273:3942-3961 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAAACCAA+AGG | - | tig0022273:3943-3962 | None:intergenic | 20.0% |
| ! | GCAAACTATTGAAAAAAAGT+AGG | - | tig0022273:3174-3193 | None:intergenic | 25.0% |
| ! | TTGAATCTATTATGTCTGTT+TGG | + | tig0022273:3331-3350 | Msa1398610:intron | 25.0% |
| !! | AAAAAAATCAGTGTAATGGA+AGG | - | tig0022273:3457-3476 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAATCAGTGTAA+TGG | - | tig0022273:3461-3480 | None:intergenic | 25.0% |
| !! | TTCTCTTATTTGTGAGATTA+GGG | + | tig0022273:3539-3558 | Msa1398610:intron | 25.0% |
| !! | TTTGCAAAGTTTTTGTTGAT+TGG | + | tig0022273:3642-3661 | Msa1398610:intron | 25.0% |
| ! | ACAATAAAATGAGGAACATA+TGG | - | tig0022273:3708-3727 | None:intergenic | 25.0% |
| ! | ATTAATTAGTTGTTCTCTGT+TGG | + | tig0022273:3760-3779 | Msa1398610:intron | 25.0% |
| ! | ACTTGTAAGAAAATAGGATT+AGG | - | tig0022273:3875-3894 | None:intergenic | 25.0% |
| ! | ATAGAAAGAAAACTTCTTCA+TGG | + | tig0022273:3970-3989 | Msa1398610:intron | 25.0% |
| ! | TAGAAAGAAAACTTCTTCAT+GGG | + | tig0022273:3971-3990 | Msa1398610:intron | 25.0% |
| !! | TTTTTCTTGTATTCTGTGAT+TGG | + | tig0022273:4623-4642 | Msa1398610:intron | 25.0% |
| !! | AAAACTTGCTTGTTTAATAG+AGG | - | tig0022273:5043-5062 | None:intergenic | 25.0% |
| ! | GAAATTTACTTATCGTTTAC+AGG | - | tig0022273:5155-5174 | None:intergenic | 25.0% |
| !!! | ATCTTAACTTTTGTTTTTGG+TGG | - | tig0022273:5177-5196 | None:intergenic | 25.0% |
| !!! | CGTATCTTAACTTTTGTTTT+TGG | - | tig0022273:5180-5199 | None:intergenic | 25.0% |
| !!! | GAAATTTACTTGTTGTTTAC+AGG | - | tig0022273:5219-5238 | None:intergenic | 25.0% |
| !!! | ATCTTAACTTTTGTTTTTGG+TGG | - | tig0022273:5177-5196 | None:intergenic | 25.0% |
| !!! | CACATCTTAACTTTTGTTTT+TGG | - | tig0022273:5244-5263 | None:intergenic | 25.0% |
| ! | TCAACATCTTATCATTAATG+AGG | - | tig0022273:5327-5346 | None:intergenic | 25.0% |
| !! | TAACTTAAGAGCATAAAAGT+TGG | - | tig0022273:5411-5430 | None:intergenic | 25.0% |
| ! | GAGTTAGATTGTAAAAAATG+GGG | + | tig0022273:5447-5466 | Msa1398610:intron | 25.0% |
| !! | AAAGAGTTTTTCATCAATTG+TGG | + | tig0022273:5735-5754 | Msa1398610:intron | 25.0% |
| ! | TCAAATAAGAAAATCAGTTG+AGG | + | tig0022273:6034-6053 | Msa1398610:intron | 25.0% |
| !! | ATAGATTTTTCCATGTTGTT+AGG | + | tig0022273:6726-6745 | Msa1398610:intron | 25.0% |
| ! | TCAACAAATATTATTAGGCT+AGG | - | tig0022273:6911-6930 | None:intergenic | 25.0% |
| ! | TCTAAACGTCTTAAAAATGT+TGG | - | tig0022273:7504-7523 | None:intergenic | 25.0% |
| !!! | TATTAATTTGCAGCCTTAAT+TGG | + | tig0022273:7733-7752 | Msa1398610:intron | 25.0% |
| ! | ATTTGATCACTAACCAATTA+AGG | - | tig0022273:7749-7768 | None:intergenic | 25.0% |
| ! | AAGCAATCAACTAATTGATA+CGG | + | tig0022273:7800-7819 | Msa1398610:intron | 25.0% |
| ! | TTTATATTGGATGACCATTA+GGG | - | tig0022273:7876-7895 | None:intergenic | 25.0% |
| !! | TTTTATATTGGATGACCATT+AGG | - | tig0022273:7877-7896 | None:intergenic | 25.0% |
| !! | GACCATAATCTCTTTTATAT+TGG | - | tig0022273:7889-7908 | None:intergenic | 25.0% |
| ! | TTTCAATTTATATCAATGCG+TGG | - | tig0022273:8035-8054 | None:intergenic | 25.0% |
| ! | ATTTCCCTTTAATTAACTAC+TGG | - | tig0022273:8106-8125 | None:intergenic | 25.0% |
| !! | AAGACCCTTAATTAGATTTT+AGG | + | tig0022273:8284-8303 | Msa1398610:intron | 25.0% |
| !! | AGACCCTTAATTAGATTTTA+GGG | + | tig0022273:8285-8304 | Msa1398610:intron | 25.0% |
| !!! | AGTTTTTTCCTAAAAACACA+TGG | - | tig0022273:8327-8346 | None:intergenic | 25.0% |
| ! | GCAAACTATTGAAAAAAAGT+AGG | - | tig0022273:3174-3193 | None:intergenic | 25.0% |
| ! | AACTAGAATTAGAATCGAAA+AGG | - | tig0022273:8505-8524 | None:intergenic | 25.0% |
| !! | AAAAAAATCAGTGTAATGGA+AGG | - | tig0022273:3457-3476 | None:intergenic | 25.0% |
| ! | CAAGAAAAAAATCAGTGTAA+TGG | - | tig0022273:3461-3480 | None:intergenic | 25.0% |
| !!! | TGTTAGTTGATTTGTGATTT+TGG | + | tig0022273:9022-9041 | Msa1398610:intron | 25.0% |
| ! | GTTCAATTCATACTATTGTT+AGG | + | tig0022273:9048-9067 | Msa1398610:intron | 25.0% |
| !! | TCATACTATTGTTAGGTTTT+TGG | + | tig0022273:9055-9074 | Msa1398610:intron | 25.0% |
| !!! | AAATTTTCTAAGATCAGAAC+AGG | - | tig0022273:9226-9245 | None:intergenic | 25.0% |
| ! | AAAATTTACCAAGTATGAAG+CGG | - | tig0022273:9512-9531 | None:intergenic | 25.0% |
| ! | TTTAAACTCAATTGAATAGC+AGG | - | tig0022273:9558-9577 | None:intergenic | 25.0% |
| !!! | TTTTTGTAGTGTTTAGTTTG+AGG | + | tig0022273:9591-9610 | Msa1398610:intron | 25.0% |
| ! | TTTAATTAGAGACGGAAAAA+AGG | - | tig0022273:9627-9646 | None:intergenic | 25.0% |
| !!! | AGATCTTAAGCATTTTTTAG+AGG | + | tig0022273:9667-9686 | Msa1398610:CDS | 25.0% |
| ! | AAGAATACTTGAATGAGAAT+AGG | - | tig0022273:10189-10208 | None:intergenic | 25.0% |
| AAAATACCTCAAACATGATG+AGG | - | tig0022273:3279-3298 | None:intergenic | 30.0% | |
| ! | TCAGATTTGTTTGTGAGATT+AGG | + | tig0022273:3365-3384 | Msa1398610:intron | 30.0% |
| ! | CAGATTTGTTTGTGAGATTA+GGG | + | tig0022273:3366-3385 | Msa1398610:intron | 30.0% |
| TCTCACAAATAAGAGAAGAT+TGG | - | tig0022273:3536-3555 | None:intergenic | 30.0% | |
| ! | CTTCTCTTATTTGTGAGATT+AGG | + | tig0022273:3538-3557 | Msa1398610:intron | 30.0% |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | + | tig0022273:3558-3577 | Msa1398610:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | + | tig0022273:3559-3578 | Msa1398610:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | + | tig0022273:3560-3579 | Msa1398610:intron | 30.0% |
| ! | GGGATTCCAATTTTTGAATT+GGG | + | tig0022273:3580-3599 | Msa1398610:intron | 30.0% |
| ! | GGATTCCAATTTTTGAATTG+GGG | + | tig0022273:3581-3600 | Msa1398610:intron | 30.0% |
| CAAATAATAACTTCACGCTT+TGG | + | tig0022273:3924-3943 | Msa1398610:intron | 30.0% | |
| CAAAAAGTAGAAACTACTGA+TGG | + | tig0022273:4063-4082 | Msa1398610:CDS | 30.0% | |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | + | tig0022273:4210-4229 | Msa1398610:intron | 30.0% |
| GATTACAATTGCACAAAACA+TGG | + | tig0022273:4786-4805 | Msa1398610:intron | 30.0% | |
| AATTTCCATGCATAATTGCA+TGG | - | tig0022273:4941-4960 | None:intergenic | 30.0% | |
| ATAGAAAATGGGATAGAGAA+TGG | - | tig0022273:5130-5149 | None:intergenic | 30.0% | |
| GTTTACAGGACATAGAAAAT+GGG | - | tig0022273:5141-5160 | None:intergenic | 30.0% | |
| ACAAAAGTTAAGATACGTAG+AGG | + | tig0022273:5183-5202 | Msa1398610:intron | 30.0% | |
| ACAAAAGTTAAGATGTGTAG+AGG | + | tig0022273:5247-5266 | Msa1398610:intron | 30.0% | |
| ATGATAAGATGTTGAAGCTA+TGG | + | tig0022273:5332-5351 | Msa1398610:intron | 30.0% | |
| ! | CATAAAAGTTGGCCTAAAAT+TGG | - | tig0022273:5400-5419 | None:intergenic | 30.0% |
| ! | AGAAATTCTAGCTAGTTTGA+TGG | + | tig0022273:5568-5587 | Msa1398610:intron | 30.0% |
| AGCTTCTAATTTCTTGTACA+TGG | - | tig0022273:5678-5697 | None:intergenic | 30.0% | |
| ! | TCCTTTTACTAAGGTTAACA+CGG | - | tig0022273:5826-5845 | None:intergenic | 30.0% |
| TTTGGATCAAACTTCTTCTT+TGG | + | tig0022273:5945-5964 | Msa1398610:intron | 30.0% | |
| TACAATTTGGGTGATTTAGA+AGG | + | tig0022273:6078-6097 | Msa1398610:intron | 30.0% | |
| ! | AGGAACGATAAGATTTTCAA+TGG | + | tig0022273:6103-6122 | Msa1398610:intron | 30.0% |
| AGGATATAAAAGTTTCGTCT+TGG | + | tig0022273:6155-6174 | Msa1398610:intron | 30.0% | |
| ATATAAAAGTTTCGTCTTGG+CGG | + | tig0022273:6158-6177 | Msa1398610:intron | 30.0% | |
| CATTCATAAAAAAGGAACGT+GGG | - | tig0022273:6208-6227 | None:intergenic | 30.0% | |
| ATCAAAACCAAACTTCACAA+AGG | - | tig0022273:6342-6361 | None:intergenic | 30.0% | |
| !!! | TTTGTGAAGTTTGGTTTTGA+TGG | + | tig0022273:6341-6360 | Msa1398610:intron | 30.0% |
| !!! | GTGTTTTTTGCTTATTCTGA+TGG | + | tig0022273:6696-6715 | Msa1398610:CDS | 30.0% |
| ! | AGGAAAAAGAGTACAAGATA+GGG | - | tig0022273:6858-6877 | None:intergenic | 30.0% |
| CATCATATTGTGAATTGTGT+TGG | + | tig0022273:6970-6989 | Msa1398610:intron | 30.0% | |
| AGAAATTAATTAGGGACCAA+TGG | + | tig0022273:7177-7196 | Msa1398610:intron | 30.0% | |
| GAGTACTATATTTGCACAAA+GGG | - | tig0022273:7249-7268 | None:intergenic | 30.0% | |
| TGAGTACTATATTTGCACAA+AGG | - | tig0022273:7250-7269 | None:intergenic | 30.0% | |
| TAGTACTCATAGTTAAGATG+TGG | + | tig0022273:7261-7280 | Msa1398610:intron | 30.0% | |
| ! | AGTCCAACTTTTGTATCTAA+CGG | + | tig0022273:7385-7404 | Msa1398610:intron | 30.0% |
| ATTCCGTTAGATACAAAAGT+TGG | - | tig0022273:7391-7410 | None:intergenic | 30.0% | |
| ACTTCTAAACTCCAAAAGAT+TGG | + | tig0022273:7597-7616 | Msa1398610:intron | 30.0% | |
| ! | TGGTTATGAATTTTCCCTAA+AGG | + | tig0022273:7617-7636 | Msa1398610:intron | 30.0% |
| GAAATAATGTGAAACCCTAA+TGG | + | tig0022273:7859-7878 | Msa1398610:intron | 30.0% | |
| AGATTATGGTCTCAATACAT+CGG | + | tig0022273:7898-7917 | Msa1398610:intron | 30.0% | |
| TGATTTGATTCTTACTCAAC+CGG | - | tig0022273:7977-7996 | None:intergenic | 30.0% | |
| TAACTACTGGTCACAAAATA+GGG | - | tig0022273:8093-8112 | None:intergenic | 30.0% | |
| TTAACTACTGGTCACAAAAT+AGG | - | tig0022273:8094-8113 | None:intergenic | 30.0% | |
| TGTGACCAGTAGTTAATTAA+AGG | + | tig0022273:8098-8117 | Msa1398610:intron | 30.0% | |
| GTGACCAGTAGTTAATTAAA+GGG | + | tig0022273:8099-8118 | Msa1398610:intron | 30.0% | |
| TGTTGGAAAGTGATAAAAAG+TGG | + | tig0022273:8178-8197 | Msa1398610:intron | 30.0% | |
| ! | GACCCTTAATTAGATTTTAG+GGG | + | tig0022273:8286-8305 | Msa1398610:intron | 30.0% |
| ! | ACCCTTAATTAGATTTTAGG+GGG | + | tig0022273:8287-8306 | Msa1398610:intron | 30.0% |
| AAAATACCTCAAACATGATG+AGG | - | tig0022273:3279-3298 | None:intergenic | 30.0% | |
| ! | TCAGATTTGTTTGTGAGATT+AGG | + | tig0022273:3365-3384 | Msa1398610:intron | 30.0% |
| ! | CAGATTTGTTTGTGAGATTA+GGG | + | tig0022273:3366-3385 | Msa1398610:intron | 30.0% |
| ! | TTCCAATCTTCTCTTATTTG+TGG | + | tig0022273:3531-3550 | Msa1398610:intron | 30.0% |
| ! | TCCAATCTTCTCTTATTTGT+GGG | + | tig0022273:3532-3551 | Msa1398610:intron | 30.0% |
| ! | TTCTCTTATTTGTGGGATTA+GGG | + | tig0022273:8737-8756 | Msa1398610:intron | 30.0% |
| ! | AGGGTTTCAAACTTTTGAAT+TGG | + | tig0022273:3558-3577 | Msa1398610:intron | 30.0% |
| ! | GGGTTTCAAACTTTTGAATT+GGG | + | tig0022273:3559-3578 | Msa1398610:intron | 30.0% |
| ! | GGTTTCAAACTTTTGAATTG+GGG | + | tig0022273:3560-3579 | Msa1398610:intron | 30.0% |
| GAAAGTAAAAGGGATCATTT+AGG | - | tig0022273:8964-8983 | None:intergenic | 30.0% | |
| TTATCTACTTCTCTACTGAT+AGG | + | tig0022273:9154-9173 | Msa1398610:intron | 30.0% | |
| TATCTACTTCTCTACTGATA+GGG | + | tig0022273:9155-9174 | Msa1398610:intron | 30.0% | |
| AAATAATCAAGATCGTTGCT+TGG | - | tig0022273:9249-9268 | None:intergenic | 30.0% | |
| !!! | TCTCTCTTTTTTTACATGTC+TGG | + | tig0022273:9417-9436 | Msa1398610:CDS | 30.0% |
| !!! | TTTTTTTACATGTCTGGTCA+TGG | + | tig0022273:9423-9442 | Msa1398610:CDS | 30.0% |
| AAATTTACCAAGTATGAAGC+GGG | - | tig0022273:9511-9530 | None:intergenic | 30.0% | |
| TTCTTTGACTGTTGTAATTC+TGG | + | tig0022273:9719-9738 | Msa1398610:CDS | 30.0% | |
| TAAGCAATATCCTAAAACTG+AGG | + | tig0022273:9763-9782 | Msa1398610:CDS | 30.0% | |
| !!! | AAAGTTATCGGTTTTTACCT+GGG | + | tig0022273:9907-9926 | Msa1398610:CDS | 30.0% |
| !! | TAAGATCAAACCTTTGAAAC+TGG | + | tig0022273:9961-9980 | Msa1398610:CDS | 30.0% |
| ! | GATCAAATTGATTTACAACC+TGG | + | tig0022273:10052-10071 | Msa1398610:CDS | 30.0% |
| ACTTGAATGAGAATAGGATT+AGG | - | tig0022273:10183-10202 | None:intergenic | 30.0% | |
| ! | CAAAATGTAGAAAGCACAAA+GGG | + | tig0022273:10317-10336 | Msa1398610:CDS | 30.0% |
| ! | AAAATGTAGAAAGCACAAAG+GGG | + | tig0022273:10318-10337 | Msa1398610:CDS | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | + | tig0022273:4210-4229 | Msa1398610:intron | 30.0% |
| TCGTTGTCTTCATTCTTCAT+TGG | + | tig0022273:3234-3253 | Msa1398610:five_prime_UTR | 35.0% | |
| ! | GGGGATTCCAATTTTTGAAT+TGG | + | tig0022273:3579-3598 | Msa1398610:intron | 35.0% |
| GGAATCCCCAATTCAAAAAT+TGG | - | tig0022273:3589-3608 | None:intergenic | 35.0% | |
| CAGATTGACACACACAAAAT+TGG | - | tig0022273:3610-3629 | None:intergenic | 35.0% | |
| CTCTGTTGGAATTTATTCGA+AGG | + | tig0022273:3774-3793 | Msa1398610:intron | 35.0% | |
| ! | TAGGTTGAATTACCCATTTG+CGG | - | tig0022273:3856-3875 | None:intergenic | 35.0% |
| ! | GCAAAAAGTAGAAAGCACAA+AGG | + | tig0022273:4008-4027 | Msa1398610:CDS | 35.0% |
| ! | AAAAGTAGAAAGCACAAAGG+AGG | + | tig0022273:4011-4030 | Msa1398610:CDS | 35.0% |
| !!! | GTTTCTACTTTTTGCTCCTT+TGG | - | tig0022273:4057-4076 | None:intergenic | 35.0% |
| GAAGAAACAAACATAAGCTG+AGG | - | tig0022273:4198-4217 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | + | tig0022273:4266-4285 | Msa1398610:CDS | 35.0% | |
| TTTCTAACAGCATGCATACT+TGG | + | tig0022273:4381-4400 | Msa1398610:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | tig0022273:4479-4498 | Msa1398610:CDS | 35.0% |
| TTCAGTTCTGCTAATCTTTG+TGG | + | tig0022273:4648-4667 | Msa1398610:intron | 35.0% | |
| AAATCGCAAGACTGTTTAGT+TGG | + | tig0022273:4764-4783 | Msa1398610:intron | 35.0% | |
| !! | ATAATTGCATGGTTTTGCAG+AGG | - | tig0022273:4930-4949 | None:intergenic | 35.0% |
| CAAAACCATGCAATTATGCA+TGG | + | tig0022273:4933-4952 | Msa1398610:intron | 35.0% | |
| ATGTATAGCTACGACTATCA+GGG | - | tig0022273:4972-4991 | None:intergenic | 35.0% | |
| CGTTTACAGGACATAGAAAA+TGG | - | tig0022273:5142-5161 | None:intergenic | 35.0% | |
| GATTGTAAAAAATGGGGACT+TGG | + | tig0022273:5453-5472 | Msa1398610:intron | 35.0% | |
| CTTTGTAATTCATGCAGACA+TGG | - | tig0022273:5490-5509 | None:intergenic | 35.0% | |
| TGCATGAATTACAAAGACGA+GGG | + | tig0022273:5494-5513 | Msa1398610:intron | 35.0% | |
| ! | AGCTAGTTTGATGGTAGATT+TGG | + | tig0022273:5577-5596 | Msa1398610:intron | 35.0% |
| ! | TAGTTTGATGGTAGATTTGG+AGG | + | tig0022273:5580-5599 | Msa1398610:intron | 35.0% |
| ! | AGTTTGATGGTAGATTTGGA+GGG | + | tig0022273:5581-5600 | Msa1398610:intron | 35.0% |
| AGAAGCTATGTATATCTGAG+AGG | + | tig0022273:5691-5710 | Msa1398610:intron | 35.0% | |
| TGTATATCTGAGAGGACAAT+TGG | + | tig0022273:5699-5718 | Msa1398610:intron | 35.0% | |
| GTATATCTGAGAGGACAATT+GGG | + | tig0022273:5700-5719 | Msa1398610:intron | 35.0% | |
| TATATCTGAGAGGACAATTG+GGG | + | tig0022273:5701-5720 | Msa1398610:intron | 35.0% | |
| TCATCAATTGTGGAAGAGTT+CGG | + | tig0022273:5745-5764 | Msa1398610:intron | 35.0% | |
| ! | CCTTTTACTAAGGTTAACAC+GGG | - | tig0022273:5825-5844 | None:intergenic | 35.0% |
| ! | GAAGGACATTCCTTTTACTA+AGG | - | tig0022273:5835-5854 | None:intergenic | 35.0% |
| ! | TGAGGTGTGTTTTATGTGAT+AGG | + | tig0022273:5870-5889 | Msa1398610:intron | 35.0% |
| ! | GAGGTGTGTTTTATGTGATA+GGG | + | tig0022273:5871-5890 | Msa1398610:intron | 35.0% |
| CAATGCATGAATAAATTGGG+GGG | - | tig0022273:5992-6011 | None:intergenic | 35.0% | |
| CCAATGCATGAATAAATTGG+GGG | - | tig0022273:5993-6012 | None:intergenic | 35.0% | |
| CCCAATGCATGAATAAATTG+GGG | - | tig0022273:5994-6013 | None:intergenic | 35.0% | |
| CCCCAATTTATTCATGCATT+GGG | + | tig0022273:5991-6010 | Msa1398610:intron | 35.0% | |
| GCCCAATGCATGAATAAATT+GGG | - | tig0022273:5995-6014 | None:intergenic | 35.0% | |
| AGCCCAATGCATGAATAAAT+TGG | - | tig0022273:5996-6015 | None:intergenic | 35.0% | |
| TTATTTGGCACGCTACAATT+TGG | + | tig0022273:6065-6084 | Msa1398610:intron | 35.0% | |
| TATTTGGCACGCTACAATTT+GGG | + | tig0022273:6066-6085 | Msa1398610:intron | 35.0% | |
| ! | CGATAAGATTTTCAATGGCA+AGG | + | tig0022273:6108-6127 | Msa1398610:intron | 35.0% |
| ! | GATTTTCAATGGCAAGGATT+CGG | + | tig0022273:6114-6133 | Msa1398610:intron | 35.0% |
| CCATTCATAAAAAAGGAACG+TGG | - | tig0022273:6209-6228 | None:intergenic | 35.0% | |
| !!! | CCACGTTCCTTTTTTATGAA+TGG | + | tig0022273:6206-6225 | Msa1398610:intron | 35.0% |
| !!! | TCCTTTTTTATGAATGGTGC+TGG | + | tig0022273:6212-6231 | Msa1398610:intron | 35.0% |
| !!! | CCTTTTTTATGAATGGTGCT+GGG | + | tig0022273:6213-6232 | Msa1398610:intron | 35.0% |
| CAATGCCAAACTATCTGTTT+AGG | - | tig0022273:6252-6271 | None:intergenic | 35.0% | |
| !!! | GTTTGGTTTTGATGGTTTGT+AGG | + | tig0022273:6349-6368 | Msa1398610:intron | 35.0% |
| !! | TTTTTCGGATGTTGTTGTTC+TGG | + | tig0022273:6397-6416 | Msa1398610:intron | 35.0% |
| TCTGGTGTGTGTTTGATATT+TGG | + | tig0022273:6415-6434 | Msa1398610:intron | 35.0% | |
| CTGGTGTGTGTTTGATATTT+GGG | + | tig0022273:6416-6435 | Msa1398610:intron | 35.0% | |
| TCCTGTTTCACTCTTATATC+AGG | + | tig0022273:6779-6798 | Msa1398610:intron | 35.0% | |
| TCCTGATATAAGAGTGAAAC+AGG | - | tig0022273:6783-6802 | None:intergenic | 35.0% | |
| ! | CTCTTATATCAGGAAGTATG+AGG | + | tig0022273:6789-6808 | Msa1398610:intron | 35.0% |
| !!! | GGTTTTTTAGTGAGCTTGAT+TGG | + | tig0022273:6810-6829 | Msa1398610:intron | 35.0% |
| ! | GAGGAAAAAGAGTACAAGAT+AGG | - | tig0022273:6859-6878 | None:intergenic | 35.0% |
| ACATTAACCCCAAATGTGTA+TGG | - | tig0022273:7069-7088 | None:intergenic | 35.0% | |
| ! | AATAACGGAGACAAACCTAA+GGG | + | tig0022273:7110-7129 | Msa1398610:intron | 35.0% |
| !! | AACACACATTTTGATCCCTT+AGG | - | tig0022273:7128-7147 | None:intergenic | 35.0% |
| TACTCATAGTTAAGATGTGG+AGG | + | tig0022273:7264-7283 | Msa1398610:intron | 35.0% | |
| AAAGAATTGTTGCACCATTC+AGG | + | tig0022273:7317-7336 | Msa1398610:intron | 35.0% | |
| AACCAGACATTTCGATATTG+AGG | + | tig0022273:7569-7588 | Msa1398610:intron | 35.0% | |
| ACCAGACATTTCGATATTGA+GGG | + | tig0022273:7570-7589 | Msa1398610:intron | 35.0% | |
| !! | AAATGTTAAAGAGTGCCCTT+GGG | + | tig0022273:8122-8141 | Msa1398610:intron | 35.0% |
| !! | TTTTGGTTACCTTAACGCAT+TGG | + | tig0022273:8256-8275 | Msa1398610:intron | 35.0% |
| TCTTGTTAACCAATGCGTTA+AGG | - | tig0022273:8268-8287 | None:intergenic | 35.0% | |
| GCCCCCTAAAATCTAATTAA+GGG | - | tig0022273:8291-8310 | None:intergenic | 35.0% | |
| TGCCCCCTAAAATCTAATTA+AGG | - | tig0022273:8292-8311 | None:intergenic | 35.0% | |
| !!! | TAGATTTTAGGGGGCATTTT+AGG | + | tig0022273:8296-8315 | Msa1398610:intron | 35.0% |
| ! | AGGATCTTCCATGTGTTTTT+AGG | + | tig0022273:8316-8335 | Msa1398610:intron | 35.0% |
| TCGTTGTCTTCATTCTTCAT+TGG | + | tig0022273:3234-3253 | Msa1398610:five_prime_UTR | 35.0% | |
| TCCCACAAATAAGAGAAGAT+TGG | - | tig0022273:8734-8753 | None:intergenic | 35.0% | |
| ! | CTTCTCTTATTTGTGGGATT+AGG | + | tig0022273:8736-8755 | Msa1398610:intron | 35.0% |
| CAGATTGTCACACACAAAAT+TGG | - | tig0022273:8787-8806 | None:intergenic | 35.0% | |
| GTGTAACTAACATACACTTG+CGG | + | tig0022273:8823-8842 | Msa1398610:intron | 35.0% | |
| AGTAAAAGGGATCATTTAGG+AGG | - | tig0022273:8961-8980 | None:intergenic | 35.0% | |
| !!! | AAAAGTTTTGTTCGGCTCAT+TGG | + | tig0022273:9125-9144 | Msa1398610:intron | 35.0% |
| TAAATCCACAATGTTCGATG+AGG | - | tig0022273:9281-9300 | None:intergenic | 35.0% | |
| CGAACATTGTGGATTTAAAG+AGG | + | tig0022273:9284-9303 | Msa1398610:CDS | 35.0% | |
| ! | GGAAAATATCAAGGTGTTTC+AGG | + | tig0022273:9305-9324 | Msa1398610:CDS | 35.0% |
| TTTCAGGACGTTGTTGTAAA+GGG | + | tig0022273:9321-9340 | Msa1398610:CDS | 35.0% | |
| AATGGATCAGCTCTTTCAAA+TGG | + | tig0022273:9371-9390 | Msa1398610:CDS | 35.0% | |
| !!! | AAAGAGAGAACCTCCTTTTT+TGG | - | tig0022273:9406-9425 | None:intergenic | 35.0% |
| TTCTTGGACAAGAAGAGAAA+CGG | + | tig0022273:9447-9466 | Msa1398610:CDS | 35.0% | |
| AATTTACCAAGTATGAAGCG+GGG | - | tig0022273:9510-9529 | None:intergenic | 35.0% | |
| !! | TTTTTAGAGGAAGTCCAAGA+AGG | + | tig0022273:9680-9699 | Msa1398610:CDS | 35.0% |
| GATTTATAGACACTCCTTCT+TGG | - | tig0022273:9697-9716 | None:intergenic | 35.0% | |
| !!! | TGCTATTTTCATGCAAGACT+TGG | + | tig0022273:9880-9899 | Msa1398610:CDS | 35.0% |
| !! | GCTATTTTCATGCAAGACTT+GGG | + | tig0022273:9881-9900 | Msa1398610:CDS | 35.0% |
| AGACTTGGGATCAAAGTTAT+CGG | + | tig0022273:9895-9914 | Msa1398610:CDS | 35.0% | |
| !!! | CAAAGTTATCGGTTTTTACC+TGG | + | tig0022273:9906-9925 | Msa1398610:CDS | 35.0% |
| TTTGATCTTAGTCCCAAACT+CGG | - | tig0022273:9951-9970 | None:intergenic | 35.0% | |
| ACTGACAATCACAACACAAA+AGG | - | tig0022273:10078-10097 | None:intergenic | 35.0% | |
| TTTGTGTTGTGATTGTCAGT+TGG | + | tig0022273:10078-10097 | Msa1398610:CDS | 35.0% | |
| CAAATAATAACCTCACCCTT+TGG | + | tig0022273:10232-10251 | Msa1398610:intron | 35.0% | |
| TAATAAGAAACCAAAGGGTG+AGG | - | tig0022273:10245-10264 | None:intergenic | 35.0% | |
| AACTTCTTCATGAGAAGAAG+CGG | + | tig0022273:10288-10307 | Msa1398610:CDS | 35.0% | |
| ! | GCAAAATGTAGAAAGCACAA+AGG | + | tig0022273:10316-10335 | Msa1398610:CDS | 35.0% |
| ! | AAATGTAGAAAGCACAAAGG+GGG | + | tig0022273:10319-10338 | Msa1398610:CDS | 35.0% |
| GCCAAAAGAATTTGAATACC+CGG | + | tig0022273:10418-10437 | Msa1398610:CDS | 35.0% | |
| ! | ACCGGGTATTCAAATTCTTT+TGG | - | tig0022273:10422-10441 | None:intergenic | 35.0% |
| GAAGAAACAAACATAAGCTG+AGG | - | tig0022273:4198-4217 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | + | tig0022273:4266-4285 | Msa1398610:CDS | 35.0% | |
| GCTGTTAGAAAGACATTGAT+CGG | - | tig0022273:4372-4391 | None:intergenic | 35.0% | |
| TTTCTAACAGCAAGCATACT+TGG | + | tig0022273:10705-10724 | Msa1398610:intron | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | + | tig0022273:4479-4498 | Msa1398610:CDS | 35.0% |
| CTCAAACATGATGAGGATGA+GGG | - | tig0022273:3272-3291 | None:intergenic | 40.0% | |
| ! | CTGTTCTGTGTTGTGTTGAT+TGG | + | tig0022273:3503-3522 | Msa1398610:intron | 40.0% |
| AACTTCTTCATGGGAAGAAG+CGG | + | tig0022273:3980-3999 | Msa1398610:CDS | 40.0% | |
| TCTCTATGATGCAAAGACGT+TGG | + | tig0022273:4092-4111 | Msa1398610:CDS | 40.0% | |
| CATACTTGGAGCATGAGAAA+AGG | + | tig0022273:4395-4414 | Msa1398610:CDS | 40.0% | |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | tig0022273:4478-4497 | Msa1398610:CDS | 40.0% |
| GATGTATAGCTACGACTATC+AGG | - | tig0022273:4973-4992 | None:intergenic | 40.0% | |
| !! | AGGCATTCTGGAACAATTTG+TGG | + | tig0022273:5076-5095 | Msa1398610:intron | 40.0% |
| !! | GGCATTCTGGAACAATTTGT+GGG | + | tig0022273:5077-5096 | Msa1398610:intron | 40.0% |
| ! | AGAGAATGGAAATGATGACG+AGG | - | tig0022273:5116-5135 | None:intergenic | 40.0% |
| ! | AAAATTGGCCTAAGAAGTGG+AGG | - | tig0022273:5385-5404 | None:intergenic | 40.0% |
| ! | CCTAAAATTGGCCTAAGAAG+TGG | - | tig0022273:5388-5407 | None:intergenic | 40.0% |
| ! | CCACTTCTTAGGCCAATTTT+AGG | + | tig0022273:5385-5404 | Msa1398610:intron | 40.0% |
| CTGCATGAATTACAAAGACG+AGG | + | tig0022273:5493-5512 | Msa1398610:intron | 40.0% | |
| !! | ATTACAAAGACGAGGGTGTT+AGG | + | tig0022273:5501-5520 | Msa1398610:intron | 40.0% |
| !! | TTACAAAGACGAGGGTGTTA+GGG | + | tig0022273:5502-5521 | Msa1398610:intron | 40.0% |
| !!! | TTGTCGTCGGTTTTTTGTGT+GGG | + | tig0022273:5541-5560 | Msa1398610:intron | 40.0% |
| GAGGGTCATGTGTTGAATTT+GGG | + | tig0022273:5599-5618 | Msa1398610:intron | 40.0% | |
| GTGTTGAATTTGGGTCTTGA+TGG | + | tig0022273:5608-5627 | Msa1398610:intron | 40.0% | |
| ! | TGAATTTGGGTCTTGATGGT+TGG | + | tig0022273:5612-5631 | Msa1398610:intron | 40.0% |
| ! | GAATTTGGGTCTTGATGGTT+GGG | + | tig0022273:5613-5632 | Msa1398610:intron | 40.0% |
| ! | AATTTGGGTCTTGATGGTTG+GGG | + | tig0022273:5614-5633 | Msa1398610:intron | 40.0% |
| ATATCTGAGAGGACAATTGG+GGG | + | tig0022273:5702-5721 | Msa1398610:intron | 40.0% | |
| TACTAAGGTTAACACGGGTA+GGG | - | tig0022273:5820-5839 | None:intergenic | 40.0% | |
| TTACTAAGGTTAACACGGGT+AGG | - | tig0022273:5821-5840 | None:intergenic | 40.0% | |
| CCCGTGTTAACCTTAGTAAA+AGG | + | tig0022273:5822-5841 | Msa1398610:intron | 40.0% | |
| TAAAAGGAATGTCCTTCCTC+CGG | + | tig0022273:5838-5857 | Msa1398610:intron | 40.0% | |
| AACCATCTCTTCATGCATTG+TGG | + | tig0022273:5908-5927 | Msa1398610:intron | 40.0% | |
| ACCATCTCTTCATGCATTGT+GGG | + | tig0022273:5909-5928 | Msa1398610:intron | 40.0% | |
| CCCCCAATTTATTCATGCAT+TGG | + | tig0022273:5990-6009 | Msa1398610:intron | 40.0% | |
| TATTCATGCATTGGGCTTGT+TGG | + | tig0022273:5999-6018 | Msa1398610:intron | 40.0% | |
| TTTGGGTGATTTAGAAGGCT+AGG | + | tig0022273:6083-6102 | Msa1398610:intron | 40.0% | |
| CCCAGCACCATTCATAAAAA+AGG | - | tig0022273:6216-6235 | None:intergenic | 40.0% | |
| TATCTGTTTAGGCACACCAA+CGG | - | tig0022273:6241-6260 | None:intergenic | 40.0% | |
| GTGTGCCTAAACAGATAGTT+TGG | + | tig0022273:6244-6263 | Msa1398610:intron | 40.0% | |
| !!! | AGAAGGTTTCTGGCTTTTAG+TGG | + | tig0022273:6286-6305 | Msa1398610:intron | 40.0% |
| !!! | TGTGGTTTTTTGACAGAGAC+AGG | + | tig0022273:6459-6478 | Msa1398610:intron | 40.0% |
| !!! | GTGGTTTTTTGACAGAGACA+GGG | + | tig0022273:6460-6479 | Msa1398610:intron | 40.0% |
| ACTGCAGCAACAAAAAGTCA+CGG | - | tig0022273:6537-6556 | None:intergenic | 40.0% | |
| !!! | GTGTTGTTTTCAGTTGGTTC+TGG | + | tig0022273:6597-6616 | Msa1398610:intron | 40.0% |
| AAACGCAACACCTAACAACA+TGG | - | tig0022273:6739-6758 | None:intergenic | 40.0% | |
| ! | TAGTGAGCTTGATTGGTGTT+TGG | + | tig0022273:6817-6836 | Msa1398610:intron | 40.0% |
| ! | AGTGAGCTTGATTGGTGTTT+GGG | + | tig0022273:6818-6837 | Msa1398610:intron | 40.0% |
| ! | CTTGTACTCTTTTTCCTCCT+TGG | + | tig0022273:6861-6880 | Msa1398610:intron | 40.0% |
| AAGATACACTAAACCTGCCA+AGG | - | tig0022273:6881-6900 | None:intergenic | 40.0% | |
| TTGGTCCACCATACACATTT+GGG | + | tig0022273:7058-7077 | Msa1398610:intron | 40.0% | |
| TTAACCCCAAATGTGTATGG+TGG | - | tig0022273:7066-7085 | None:intergenic | 40.0% | |
| ! | GAATAACGGAGACAAACCTA+AGG | + | tig0022273:7109-7128 | Msa1398610:intron | 40.0% |
| TACAATACTGCTTGGTCCAT+TGG | - | tig0022273:7196-7215 | None:intergenic | 40.0% | |
| AAGACCACTACAATACTGCT+TGG | - | tig0022273:7204-7223 | None:intergenic | 40.0% | |
| !! | CAGTATTGTAGTGGTCTTGT+GGG | + | tig0022273:7206-7225 | Msa1398610:intron | 40.0% |
| ! | TGGAGGACTGTTTTATCCTA+GGG | + | tig0022273:7281-7300 | Msa1398610:intron | 40.0% |
| !!! | CCTCTCTTTAAGACGTTTTG+CGG | - | tig0022273:7348-7367 | None:intergenic | 40.0% |
| CGCAAAACGTCTTAAAGAGA+GGG | + | tig0022273:7346-7365 | Msa1398610:intron | 40.0% | |
| ACAAAAGTTGGACTGAGACA+AGG | - | tig0022273:7379-7398 | None:intergenic | 40.0% | |
| TCCCTCAATATCGAAATGTC+TGG | - | tig0022273:7574-7593 | None:intergenic | 40.0% | |
| TGATACGGACTCAATATGAG+TGG | + | tig0022273:7815-7834 | Msa1398610:intron | 40.0% | |
| GATACGGACTCAATATGAGT+GGG | + | tig0022273:7816-7835 | Msa1398610:intron | 40.0% | |
| ATATGGGGAGAAAAGAGAAC+TGG | - | tig0022273:7930-7949 | None:intergenic | 40.0% | |
| ! | TTCTCTTTTCTCCCCATATG+AGG | + | tig0022273:7931-7950 | Msa1398610:intron | 40.0% |
| !! | GAAATGTTAAAGAGTGCCCT+TGG | + | tig0022273:8121-8140 | Msa1398610:intron | 40.0% |
| !! | AATGTTAAAGAGTGCCCTTG+GGG | + | tig0022273:8123-8142 | Msa1398610:intron | 40.0% |
| CTCAAACATGATGAGGATGA+GGG | - | tig0022273:3272-3291 | None:intergenic | 40.0% | |
| ! | CTGTTCTGTGTTGTGTTGAT+TGG | + | tig0022273:3503-3522 | Msa1398610:intron | 40.0% |
| TAGAGAAAGATCAGAGACGA+CGG | - | tig0022273:8874-8893 | None:intergenic | 40.0% | |
| TGATAGGGAGGAAGAAATCA+CGG | + | tig0022273:9170-9189 | Msa1398610:intron | 40.0% | |
| GGAAGAAATCACGGTTTATC+TGG | + | tig0022273:9179-9198 | Msa1398610:CDS | 40.0% | |
| TAAGATCAGAACAGGAACCA+GGG | - | tig0022273:9218-9237 | None:intergenic | 40.0% | |
| AAATGCCTCATCGAACATTG+TGG | + | tig0022273:9273-9292 | Msa1398610:CDS | 40.0% | |
| GTTTCAGGACGTTGTTGTAA+AGG | + | tig0022273:9320-9339 | Msa1398610:CDS | 40.0% | |
| ATCAGCTCTTTCAAATGGCT+AGG | + | tig0022273:9376-9395 | Msa1398610:CDS | 40.0% | |
| ! | ATCAGCATCCTTGTTGGTTA+TGG | + | tig0022273:9471-9490 | Msa1398610:CDS | 40.0% |
| ! | GAAGCACAAGTTGACTTTGA+AGG | - | tig0022273:9797-9816 | None:intergenic | 40.0% |
| !! | GATCAAACCTTTGAAACTGG+TGG | + | tig0022273:9964-9983 | Msa1398610:CDS | 40.0% |
| ATCTGTTCCACCAGTTTCAA+AGG | - | tig0022273:9974-9993 | None:intergenic | 40.0% | |
| !! | GATTCTGCTTCGTTTTAGCA+TGG | - | tig0022273:10003-10022 | None:intergenic | 40.0% |
| AGGTTGAGTTTACCCATTTG+CGG | - | tig0022273:10163-10182 | None:intergenic | 40.0% | |
| CTTTCAACTTTCTGCTCCTT+TGG | - | tig0022273:10365-10384 | None:intergenic | 40.0% | |
| !! | CAGAAAGTTGAAAGCACTGA+GGG | + | tig0022273:10371-10390 | Msa1398610:CDS | 40.0% |
| GAGGGAGAGTTTCTTTATGA+TGG | + | tig0022273:10389-10408 | Msa1398610:CDS | 40.0% | |
| TTCAACGTCTCTTCGTAAAC+CGG | - | tig0022273:10440-10459 | None:intergenic | 40.0% | |
| GTTTACGAAGAGACGTTGAA+AGG | + | tig0022273:10440-10459 | Msa1398610:CDS | 40.0% | |
| CATACTTGGAGCATGAGAAA+AGG | + | tig0022273:4395-4414 | Msa1398610:CDS | 40.0% | |
| ! | ACTCTTCAAAAAGCATGCAG+AGG | + | tig0022273:10750-10769 | Msa1398610:CDS | 40.0% |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | + | tig0022273:4478-4497 | Msa1398610:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | + | tig0022273:10831-10850 | Msa1398610:exon | 40.0% | |
| AAACATGATGAGGATGAGGG+AGG | - | tig0022273:3269-3288 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGATG+AGG | - | tig0022273:3273-3292 | None:intergenic | 45.0% | |
| CCTCATCCTCATCATGTTTG+AGG | + | tig0022273:3270-3289 | Msa1398610:exon | 45.0% | |
| GTTGAATTACCCATTTGCGG+TGG | - | tig0022273:3853-3872 | None:intergenic | 45.0% | |
| ACAAAGGAGGATCTTCTCCA+TGG | + | tig0022273:4024-4043 | Msa1398610:CDS | 45.0% | |
| CAAAGGAGGATCTTCTCCAT+GGG | + | tig0022273:4025-4044 | Msa1398610:CDS | 45.0% | |
| ! | CTCTCTCTGCTGTTTGCATT+TGG | + | tig0022273:4164-4183 | Msa1398610:intron | 45.0% |
| GTCTCCAGTTCTACTTGATG+AGG | + | tig0022273:4288-4307 | Msa1398610:intron | 45.0% | |
| CTTGCCTCATCAAGTAGAAC+TGG | - | tig0022273:4295-4314 | None:intergenic | 45.0% | |
| ! | ACTCTTCAAGAAGCATGCAG+AGG | + | tig0022273:4426-4445 | Msa1398610:CDS | 45.0% |
| AGCATGCAGAGGAAAAGAAG+CGG | + | tig0022273:4437-4456 | Msa1398610:CDS | 45.0% | |
| AAAGAGGAGCTGTTGCTGAT+AGG | + | tig0022273:4502-4521 | Msa1398610:CDS | 45.0% | |
| ACCATGCTATGCTATGCTCT+TGG | + | tig0022273:4530-4549 | Msa1398610:intron | 45.0% | |
| CAGAAGACGACACAATTCTC+TGG | - | tig0022273:4556-4575 | None:intergenic | 45.0% | |
| !! | TTGCATGGTTTTGCAGAGGA+CGG | - | tig0022273:4926-4945 | None:intergenic | 45.0% |
| !!! | AAGTTTTGAGCTGAGACGCA+AGG | + | tig0022273:5056-5075 | Msa1398610:intron | 45.0% |
| ! | TGATGACGAGGACAATTGAG+AGG | - | tig0022273:5104-5123 | None:intergenic | 45.0% |
| AAATGGGGACTTGGACACAA+TGG | + | tig0022273:5462-5481 | Msa1398610:intron | 45.0% | |
| AATGGGGACTTGGACACAAT+GGG | + | tig0022273:5463-5482 | Msa1398610:intron | 45.0% | |
| !! | GGGAGTTTTCTTGTTGTCGT+CGG | + | tig0022273:5528-5547 | Msa1398610:intron | 45.0% |
| !!! | GTTGTCGTCGGTTTTTTGTG+TGG | + | tig0022273:5540-5559 | Msa1398610:intron | 45.0% |
| GGAGGGTCATGTGTTGAATT+TGG | + | tig0022273:5598-5617 | Msa1398610:intron | 45.0% | |
| TATCTGAGAGGACAATTGGG+GGG | + | tig0022273:5703-5722 | Msa1398610:intron | 45.0% | |
| !! | GAGAGAGCAACCACTTTTGA+CGG | - | tig0022273:5773-5792 | None:intergenic | 45.0% |
| !! | ACACACCTCAAGTTGACATC+CGG | - | tig0022273:5860-5879 | None:intergenic | 45.0% |
| CCATCTCTTCATGCATTGTG+GGG | + | tig0022273:5910-5929 | Msa1398610:intron | 45.0% | |
| GTTGAGGCCTTCGACTTATT+TGG | + | tig0022273:6050-6069 | Msa1398610:intron | 45.0% | |
| TAGCGTGCCAAATAAGTCGA+AGG | - | tig0022273:6060-6079 | None:intergenic | 45.0% | |
| TTTCAATGGCAAGGATTCGG+AGG | + | tig0022273:6117-6136 | Msa1398610:intron | 45.0% | |
| TAAAAGTTTCGTCTTGGCGG+TGG | + | tig0022273:6161-6180 | Msa1398610:intron | 45.0% | |
| GAACGTGGGACTCTTTAAAC+GGG | - | tig0022273:6194-6213 | None:intergenic | 45.0% | |
| GGAACGTGGGACTCTTTAAA+CGG | - | tig0022273:6195-6214 | None:intergenic | 45.0% | |
| !!! | TCTGGCTTTTAGTGGCATTG+TGG | + | tig0022273:6294-6313 | Msa1398610:intron | 45.0% |
| !! | CTGGCTTTTAGTGGCATTGT+GGG | + | tig0022273:6295-6314 | Msa1398610:intron | 45.0% |
| !! | GGTTTTGATGGTTTGTAGGC+TGG | + | tig0022273:6353-6372 | Msa1398610:intron | 45.0% |
| AAACCACACAACAAACCAGC+AGG | - | tig0022273:6447-6466 | None:intergenic | 45.0% | |
| CTGTTGTGCTTTAGCAAGTG+CGG | + | tig0022273:6489-6508 | Msa1398610:intron | 45.0% | |
| TGTTGCTGCAGTGATGCTTT+CGG | + | tig0022273:6545-6564 | Msa1398610:intron | 45.0% | |
| !!! | GGCTGAGTGTTGTTTTCAGT+TGG | + | tig0022273:6591-6610 | Msa1398610:intron | 45.0% |
| !! | AGTTGGTTCTGGTTCGTGTT+TGG | + | tig0022273:6608-6627 | Msa1398610:intron | 45.0% |
| !! | GTTGGTTCTGGTTCGTGTTT+GGG | + | tig0022273:6609-6628 | Msa1398610:intron | 45.0% |
| ! | TACTCTTTTTCCTCCTTGGC+AGG | + | tig0022273:6865-6884 | Msa1398610:intron | 45.0% |
| ATACACTAAACCTGCCAAGG+AGG | - | tig0022273:6878-6897 | None:intergenic | 45.0% | |
| GTTGGTCCACCATACACATT+TGG | + | tig0022273:7057-7076 | Msa1398610:intron | 45.0% | |
| TGGTCCACCATACACATTTG+GGG | + | tig0022273:7059-7078 | Msa1398610:intron | 45.0% | |
| TGGACCAAGCAGTATTGTAG+TGG | + | tig0022273:7197-7216 | Msa1398610:intron | 45.0% | |
| ! | GCAGTATTGTAGTGGTCTTG+TGG | + | tig0022273:7205-7224 | Msa1398610:intron | 45.0% |
| !!! | TGGTCTTGTGGGTGTTGTTT+TGG | + | tig0022273:7217-7236 | Msa1398610:intron | 45.0% |
| ! | GTGGAGGACTGTTTTATCCT+AGG | + | tig0022273:7280-7299 | Msa1398610:intron | 45.0% |
| TTTCTTGTCTCGTTGTCCCT+AGG | - | tig0022273:7300-7319 | None:intergenic | 45.0% | |
| CCGCAAAACGTCTTAAAGAG+AGG | + | tig0022273:7345-7364 | Msa1398610:intron | 45.0% | |
| CAATATGAGTGGGTGTCTGA+AGG | + | tig0022273:7826-7845 | Msa1398610:intron | 45.0% | |
| GAACTTGCGGCATAAAGTAC+CGG | + | tig0022273:7955-7974 | Msa1398610:intron | 45.0% | |
| TCCTTTATCCAATGCCCCAA+GGG | - | tig0022273:8140-8159 | None:intergenic | 45.0% | |
| TTCCTTTATCCAATGCCCCA+AGG | - | tig0022273:8141-8160 | None:intergenic | 45.0% | |
| AAACATGATGAGGATGAGGG+AGG | - | tig0022273:3269-3288 | None:intergenic | 45.0% | |
| CCTCAAACATGATGAGGATG+AGG | - | tig0022273:3273-3292 | None:intergenic | 45.0% | |
| CCTCATCCTCATCATGTTTG+AGG | + | tig0022273:3270-3289 | Msa1398610:exon | 45.0% | |
| CTACTTCTCTACTGATAGGG+AGG | + | tig0022273:9158-9177 | Msa1398610:intron | 45.0% | |
| CTGGTTGTATTAACCTACCC+TGG | + | tig0022273:9198-9217 | Msa1398610:CDS | 45.0% | |
| CTAAGATCAGAACAGGAACC+AGG | - | tig0022273:9219-9238 | None:intergenic | 45.0% | |
| GCTCTTTCAAATGGCTAGGA+AGG | + | tig0022273:9380-9399 | Msa1398610:CDS | 45.0% | |
| ATGGCTAGGAAGGCCAAAAA+AGG | + | tig0022273:9390-9409 | Msa1398610:CDS | 45.0% | |
| CATGTCTGGTCATGGATTCT+TGG | + | tig0022273:9431-9450 | Msa1398610:CDS | 45.0% | |
| AACGGAATCAGCATCCTTGT+TGG | + | tig0022273:9465-9484 | Msa1398610:CDS | 45.0% | |
| ! | CATCCTTGTTGGTTATGGTG+AGG | + | tig0022273:9476-9495 | Msa1398610:CDS | 45.0% |
| ! | CTTGTTGGTTATGGTGAGGA+CGG | + | tig0022273:9480-9499 | Msa1398610:CDS | 45.0% |
| ! | TTGTTGGTTATGGTGAGGAC+GGG | + | tig0022273:9481-9500 | Msa1398610:CDS | 45.0% |
| ! | GGAGGACTATCCTCAGTTTT+AGG | - | tig0022273:9776-9795 | None:intergenic | 45.0% |
| ! | GCACAAGTTGACTTTGAAGG+AGG | - | tig0022273:9794-9813 | None:intergenic | 45.0% |
| TCAACTTGTGCTTCCCACAA+AGG | + | tig0022273:9803-9822 | Msa1398610:CDS | 45.0% | |
| TCCTGTACGTGAATGACATG+CGG | - | tig0022273:9852-9871 | None:intergenic | 45.0% | |
| TGCAAGTTCTCACCGAGTTT+GGG | + | tig0022273:9936-9955 | Msa1398610:CDS | 45.0% | |
| GAAGCAGAATCAGATCGCTA+CGG | + | tig0022273:10012-10031 | Msa1398610:CDS | 45.0% | |
| TCAGATCGCTACGGAATTGA+AGG | + | tig0022273:10021-10040 | Msa1398610:CDS | 45.0% | |
| ATCGCTACGGAATTGAAGGT+GGG | + | tig0022273:10025-10044 | Msa1398610:CDS | 45.0% | |
| TACGGAATTGAAGGTGGGAA+TGG | + | tig0022273:10030-10049 | Msa1398610:CDS | 45.0% | |
| CAATCACAACACAAAAGGCC+AGG | - | tig0022273:10073-10092 | None:intergenic | 45.0% | |
| TTGAGTTTACCCATTTGCGG+CGG | - | tig0022273:10160-10179 | None:intergenic | 45.0% | |
| TCTTCATGAGAAGAAGCGGA+AGG | + | tig0022273:10292-10311 | Msa1398610:CDS | 45.0% | |
| ! | TTTGGCTTCTTCCCATGGAT+AGG | - | tig0022273:10347-10366 | None:intergenic | 45.0% |
| TATCCATGGGAAGAAGCCAA+AGG | + | tig0022273:10346-10365 | Msa1398610:CDS | 45.0% | |
| !! | GCAGAAAGTTGAAAGCACTG+AGG | + | tig0022273:10370-10389 | Msa1398610:CDS | 45.0% |
| TCAACGTCTCTTCGTAAACC+GGG | - | tig0022273:10439-10458 | None:intergenic | 45.0% | |
| AGAGAAAAACTCGCCTCATC+AGG | - | tig0022273:10628-10647 | None:intergenic | 45.0% | |
| AGCATGCAGAGGAAAAGAAG+CGG | + | tig0022273:4437-4456 | Msa1398610:CDS | 45.0% | |
| TTGAGAAAGGGAAGGGAAAG+AGG | + | tig0022273:10815-10834 | Msa1398610:CDS | 45.0% | |
| ACCATGCTATGCTATGCTCT+TGG | + | tig0022273:4530-4549 | Msa1398610:intron | 45.0% | |
| !! | TCTTTATTAATTTAATAATT+TGG | - | tig0022273:4860-4879 | None:intergenic | 5.0% |
| AAACAAACGCGATCAGCGAG+TGG | - | tig0022273:3203-3222 | None:intergenic | 50.0% | |
| TCTTCATGGGAAGAAGCGGA+AGG | + | tig0022273:3984-4003 | Msa1398610:CDS | 50.0% | |
| TCTCCATGGGAAGAAGCCAA+AGG | + | tig0022273:4038-4057 | Msa1398610:CDS | 50.0% | |
| GTAGAACTGGAGACCACTTG+AGG | - | tig0022273:4282-4301 | None:intergenic | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | + | tig0022273:4440-4459 | Msa1398610:CDS | 50.0% | |
| GCGTCTTGAGAAAGGGAAAG+AGG | + | tig0022273:4486-4505 | Msa1398610:CDS | 50.0% | |
| ! | GCCAAGAGCATAGCATAGCA+TGG | - | tig0022273:4534-4553 | None:intergenic | 50.0% |
| AGCATCCACCTCCACTTCTT+AGG | + | tig0022273:5374-5393 | Msa1398610:intron | 50.0% | |
| ! | ATTGGCCTAAGAAGTGGAGG+TGG | - | tig0022273:5382-5401 | None:intergenic | 50.0% |
| ATGGGGACTTGGACACAATG+GGG | + | tig0022273:5464-5483 | Msa1398610:intron | 50.0% | |
| !!! | TCGTCGGTTTTTTGTGTGGG+AGG | + | tig0022273:5544-5563 | Msa1398610:intron | 50.0% |
| GAAAACACCCCATCCTCTTC+CGG | - | tig0022273:5647-5666 | None:intergenic | 50.0% | |
| !! | GGAAGAGGATGGGGTGTTTT+CGG | + | tig0022273:5646-5665 | Msa1398610:intron | 50.0% |
| CAAAAGTGGTTGCTCTCTCG+TGG | + | tig0022273:5774-5793 | Msa1398610:intron | 50.0% | |
| GGTTAACACGGGTAGGGATA+CGG | - | tig0022273:5814-5833 | None:intergenic | 50.0% | |
| !! | TCAAGTTGACATCCGGAGGA+AGG | - | tig0022273:5853-5872 | None:intergenic | 50.0% |
| TTCCTCCGGATGTCAACTTG+AGG | + | tig0022273:5852-5871 | Msa1398610:intron | 50.0% | |
| CCCCACAATGCATGAAGAGA+TGG | - | tig0022273:5913-5932 | None:intergenic | 50.0% | |
| !! | GCATTGGGCTTGTTGGAATG+CGG | + | tig0022273:6006-6025 | Msa1398610:intron | 50.0% |
| !! | CATTGGGCTTGTTGGAATGC+GGG | + | tig0022273:6007-6026 | Msa1398610:intron | 50.0% |
| !! | ATTGGGCTTGTTGGAATGCG+GGG | + | tig0022273:6008-6027 | Msa1398610:intron | 50.0% |
| TAGTTTGGCATTGTCCGCGT+TGG | + | tig0022273:6259-6278 | Msa1398610:intron | 50.0% | |
| AGTTTGGCATTGTCCGCGTT+GGG | + | tig0022273:6260-6279 | Msa1398610:intron | 50.0% | |
| ! | TGGTTTGTAGGCTGGTCAGT+TGG | + | tig0022273:6361-6380 | Msa1398610:intron | 50.0% |
| !!! | GGCTTCTCTGCTGGCTTTTT+CGG | + | tig0022273:6382-6401 | Msa1398610:intron | 50.0% |
| GATATTTGGGTAGCACCTGC+TGG | + | tig0022273:6429-6448 | Msa1398610:intron | 50.0% | |
| TGCTTTAGCAAGTGCGGTTC+TGG | + | tig0022273:6495-6514 | Msa1398610:intron | 50.0% | |
| GTTGCTGCAGTGATGCTTTC+GGG | + | tig0022273:6546-6565 | Msa1398610:intron | 50.0% | |
| ! | AACGAAGCGCTCGACTAACA+TGG | - | tig0022273:7534-7553 | None:intergenic | 50.0% |
| CCGCAAGTTCTCCTCATATG+GGG | - | tig0022273:7945-7964 | None:intergenic | 50.0% | |
| CCCCATATGAGGAGAACTTG+CGG | + | tig0022273:7942-7961 | Msa1398610:intron | 50.0% | |
| GCCGCAAGTTCTCCTCATAT+GGG | - | tig0022273:7946-7965 | None:intergenic | 50.0% | |
| TGCCGCAAGTTCTCCTCATA+TGG | - | tig0022273:7947-7966 | None:intergenic | 50.0% | |
| AAACAAACGCGATCAGCGAG+TGG | - | tig0022273:3203-3222 | None:intergenic | 50.0% | |
| ATCAGAACAGGAACCAGGGT+AGG | - | tig0022273:9214-9233 | None:intergenic | 50.0% | |
| GCTAGGAAGGCCAAAAAAGG+AGG | + | tig0022273:9393-9412 | Msa1398610:CDS | 50.0% | |
| CGTCCTCACCATAACCAACA+AGG | - | tig0022273:9482-9501 | None:intergenic | 50.0% | |
| ! | TGTTGGTTATGGTGAGGACG+GGG | + | tig0022273:9482-9501 | Msa1398610:CDS | 50.0% |
| ACCGCATGTCATTCACGTAC+AGG | + | tig0022273:9848-9867 | Msa1398610:CDS | 50.0% | |
| GTGCAAGTTCTCACCGAGTT+TGG | + | tig0022273:9935-9954 | Msa1398610:CDS | 50.0% | |
| GATCGCTACGGAATTGAAGG+TGG | + | tig0022273:10024-10043 | Msa1398610:CDS | 50.0% | |
| TGTATCTGGACTCTCCCCAA+TGG | + | tig0022273:10111-10130 | Msa1398610:CDS | 50.0% | |
| ACAAAGGGGGATCCTATCCA+TGG | + | tig0022273:10332-10351 | Msa1398610:CDS | 50.0% | |
| CAAAGGGGGATCCTATCCAT+GGG | + | tig0022273:10333-10352 | Msa1398610:CDS | 50.0% | |
| AGCAGACAGAGAGAGAGAGA+GGG | - | tig0022273:10479-10498 | None:intergenic | 50.0% | |
| ! | CTCTGTCTGCTGCTTGCATT+TGG | + | tig0022273:10488-10507 | Msa1398610:intron | 50.0% |
| GTAGAACTGGACACCACTTG+AGG | - | tig0022273:10606-10625 | None:intergenic | 50.0% | |
| GTGTCCAGTTCTACCTGATG+AGG | + | tig0022273:10612-10631 | Msa1398610:CDS | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | + | tig0022273:4440-4459 | Msa1398610:CDS | 50.0% | |
| ! | AGAGCGTCTTGAGAAAGGGA+AGG | + | tig0022273:4483-4502 | Msa1398610:CDS | 50.0% |
| GAGCGTCTTGAGAAAGGGAA+GGG | + | tig0022273:4484-4503 | Msa1398610:CDS | 50.0% | |
| ! | GCCAAGAGCATAGCATAGCA+TGG | - | tig0022273:4534-4553 | None:intergenic | 50.0% |
| CGCGATCAGCGAGTGGATAT+CGG | - | tig0022273:3196-3215 | None:intergenic | 55.0% | |
| CAGCCTAGACTCTCCCCAAT+GGG | + | tig0022273:3808-3827 | Msa1398610:CDS | 55.0% | |
| TTACCCATTTGCGGTGGCAG+TGG | - | tig0022273:3847-3866 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | tig0022273:4044-4063 | None:intergenic | 55.0% |
| ! | AGCTGAGACGCAAGGCATTC+TGG | + | tig0022273:5064-5083 | Msa1398610:intron | 55.0% |
| !! | AAGACGAGGGTGTTAGGGAG+TGG | + | tig0022273:5507-5526 | Msa1398610:intron | 55.0% |
| !! | AGACGAGGGTGTTAGGGAGT+GGG | + | tig0022273:5508-5527 | Msa1398610:intron | 55.0% |
| ! | TGGGTCTTGATGGTTGGGGA+TGG | + | tig0022273:5618-5637 | Msa1398610:intron | 55.0% |
| TGATGGTTGGGGATGGAAGC+CGG | + | tig0022273:5625-5644 | Msa1398610:intron | 55.0% | |
| GATGGAAGCCGGAAGAGGAT+GGG | + | tig0022273:5636-5655 | Msa1398610:intron | 55.0% | |
| ATGGAAGCCGGAAGAGGATG+GGG | + | tig0022273:5637-5656 | Msa1398610:intron | 55.0% | |
| ! | AGAGGACAATTGGGGGGTGT+AGG | + | tig0022273:5709-5728 | Msa1398610:intron | 55.0% |
| !! | CACCTCAAGTTGACATCCGG+AGG | - | tig0022273:5857-5876 | None:intergenic | 55.0% |
| ATGCATTGTGGGGTAGCGAG+AGG | + | tig0022273:5920-5939 | Msa1398610:intron | 55.0% | |
| TGGCAAGGATTCGGAGGTGA+TGG | + | tig0022273:6123-6142 | Msa1398610:intron | 55.0% | |
| !! | GGATTCGGAGGTGATGGAGT+TGG | + | tig0022273:6129-6148 | Msa1398610:intron | 55.0% |
| !! | GGAGGTGATGGAGTTGGTTG+AGG | + | tig0022273:6135-6154 | Msa1398610:intron | 55.0% |
| ! | TGAATGGTGCTGGGATCCGT+TGG | + | tig0022273:6222-6241 | Msa1398610:intron | 55.0% |
| GTTTGGCATTGTCCGCGTTG+GGG | + | tig0022273:6261-6280 | Msa1398610:intron | 55.0% | |
| GAAACCTTCTCACCCCAACG+CGG | - | tig0022273:6276-6295 | None:intergenic | 55.0% | |
| CGTTGGGGTGAGAAGGTTTC+TGG | + | tig0022273:6276-6295 | Msa1398610:intron | 55.0% | |
| CATTGTGGGTGTGACAGTGC+CGG | + | tig0022273:6309-6328 | Msa1398610:intron | 55.0% | |
| ATTGTGGGTGTGACAGTGCC+GGG | + | tig0022273:6310-6329 | Msa1398610:intron | 55.0% | |
| GGGGCTGCCTTTGTGAAGTT+TGG | + | tig0022273:6332-6351 | Msa1398610:intron | 55.0% | |
| ! | TGGTCAGTTGGCTTCTCTGC+TGG | + | tig0022273:6373-6392 | Msa1398610:intron | 55.0% |
| !! | GCACCTGCTGGTTTGTTGTG+TGG | + | tig0022273:6441-6460 | Msa1398610:intron | 55.0% |
| ! | TGCTTTCGGGTGTGTGTTGC+TGG | + | tig0022273:6559-6578 | Msa1398610:intron | 55.0% |
| !! | GTGTGTTGCTGGTTTGCAGC+TGG | + | tig0022273:6570-6589 | Msa1398610:intron | 55.0% |
| ! | GGTTCGTGTTTGGGTGCTAC+AGG | + | tig0022273:6618-6637 | Msa1398610:CDS | 55.0% |
| TGTCTGGCCTGTCTGTGTTG+CGG | + | tig0022273:6649-6668 | Msa1398610:CDS | 55.0% | |
| ! | TGGTGGACCATCTGCGATGT+TGG | + | tig0022273:7039-7058 | Msa1398610:intron | 55.0% |
| ! | TGGTGGACCAACATCGCAGA+TGG | - | tig0022273:7049-7068 | None:intergenic | 55.0% |
| ! | GTTTTGCGGCTCTGCCTGAA+TGG | - | tig0022273:7334-7353 | None:intergenic | 55.0% |
| AAGCGCTCGACTAACATGGC+AGG | - | tig0022273:7530-7549 | None:intergenic | 55.0% | |
| !! | AAAGAGTGCCCTTGGGGCAT+TGG | + | tig0022273:8129-8148 | Msa1398610:intron | 55.0% |
| !! | GCCCTTGGGGCATTGGATAA+AGG | + | tig0022273:8136-8155 | Msa1398610:intron | 55.0% |
| CGCGATCAGCGAGTGGATAT+CGG | - | tig0022273:3196-3215 | None:intergenic | 55.0% | |
| CAGAGACGACGGCAAAAGTG+AGG | - | tig0022273:8863-8882 | None:intergenic | 55.0% | |
| TTCCCACAAAGGTCACCCCT+TGG | + | tig0022273:9814-9833 | Msa1398610:CDS | 55.0% | |
| TCCCACAAAGGTCACCCCTT+GGG | + | tig0022273:9815-9834 | Msa1398610:CDS | 55.0% | |
| CGGTAAATACCGTCCCCAAG+GGG | - | tig0022273:9832-9851 | None:intergenic | 55.0% | |
| GCGGTAAATACCGTCCCCAA+GGG | - | tig0022273:9833-9852 | None:intergenic | 55.0% | |
| TGCGGTAAATACCGTCCCCA+AGG | - | tig0022273:9834-9853 | None:intergenic | 55.0% | |
| GAGAACTTGCACAAGTGCCC+AGG | - | tig0022273:9927-9946 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | - | tig0022273:4044-4063 | None:intergenic | 55.0% |
| GACAGAGAGAGAGAGAGGGA+GGG | - | tig0022273:10475-10494 | None:intergenic | 55.0% | |
| AGACAGAGAGAGAGAGAGGG+AGG | - | tig0022273:10476-10495 | None:intergenic | 55.0% | |
| CAGCAGACAGAGAGAGAGAG+AGG | - | tig0022273:10480-10499 | None:intergenic | 55.0% | |
| CTCGCCTCATCAGGTAGAAC+TGG | - | tig0022273:10619-10638 | None:intergenic | 55.0% | |
| TTGGGGAGAGTCTAGGCTGC+TGG | - | tig0022273:3807-3826 | None:intergenic | 60.0% | |
| GCAGCCTAGACTCTCCCCAA+TGG | + | tig0022273:3807-3826 | Msa1398610:CDS | 60.0% | |
| CGATCGTGAAGGGCCCATTG+GGG | - | tig0022273:3824-3843 | None:intergenic | 60.0% | |
| GCGATCGTGAAGGGCCCATT+GGG | - | tig0022273:3825-3844 | None:intergenic | 60.0% | |
| GTGGCAGTGGCGATCGTGAA+GGG | - | tig0022273:3834-3853 | None:intergenic | 60.0% | |
| ATCGCCACTGCCACCGCAAA+TGG | + | tig0022273:3840-3859 | Msa1398610:CDS | 60.0% | |
| TCGCCACTGCCACCGCAAAT+GGG | + | tig0022273:3841-3860 | Msa1398610:CDS | 60.0% | |
| TTGGGGATGGAAGCCGGAAG+AGG | + | tig0022273:5631-5650 | Msa1398610:intron | 60.0% | |
| GGATGGAAGCCGGAAGAGGA+TGG | + | tig0022273:5635-5654 | Msa1398610:intron | 60.0% | |
| GAGTTCGGCGCCGTCAAAAG+TGG | + | tig0022273:5760-5779 | Msa1398610:intron | 60.0% | |
| GTGGGGTAGCGAGAGGAGTT+TGG | + | tig0022273:5927-5946 | Msa1398610:intron | 60.0% | |
| TTGTCCGCGTTGGGGTGAGA+AGG | + | tig0022273:6269-6288 | Msa1398610:intron | 60.0% | |
| TTGTGGGTGTGACAGTGCCG+GGG | + | tig0022273:6311-6330 | Msa1398610:intron | 60.0% | |
| ACTTCACAAAGGCAGCCCCC+CGG | - | tig0022273:6331-6350 | None:intergenic | 60.0% | |
| GCTACAGGAGCGATGCTGTC+TGG | + | tig0022273:6633-6652 | Msa1398610:CDS | 60.0% | |
| CTGTCTGTGTTGCGGCAGCA+GGG | + | tig0022273:6657-6676 | Msa1398610:CDS | 60.0% | |
| TGTCTGTGTTGCGGCAGCAG+GGG | + | tig0022273:6658-6677 | Msa1398610:CDS | 60.0% | |
| CCCCAAGGGGTGACCTTTGT+GGG | - | tig0022273:9819-9838 | None:intergenic | 60.0% | |
| CCCACAAAGGTCACCCCTTG+GGG | + | tig0022273:9816-9835 | Msa1398610:CDS | 60.0% | |
| TCCCCAAGGGGTGACCTTTG+TGG | - | tig0022273:9820-9839 | None:intergenic | 60.0% | |
| CAAAGGTCACCCCTTGGGGA+CGG | + | tig0022273:9820-9839 | Msa1398610:CDS | 60.0% | |
| !! | CGGTTGGGAGGTGTCCATTG+GGG | - | tig0022273:10128-10147 | None:intergenic | 60.0% |
| !! | GCGGTTGGGAGGTGTCCATT+GGG | - | tig0022273:10129-10148 | None:intergenic | 60.0% |
| TTACCCATTTGCGGCGGCGA+CGG | - | tig0022273:10154-10173 | None:intergenic | 60.0% | |
| GGGCCCATTGGGGAGAGTCT+AGG | - | tig0022273:3814-3833 | None:intergenic | 65.0% | |
| GGCGATCGTGAAGGGCCCAT+TGG | - | tig0022273:3826-3845 | None:intergenic | 65.0% | |
| GGTGGCAGTGGCGATCGTGA+AGG | - | tig0022273:3835-3854 | None:intergenic | 65.0% | |
| ! | TGTGGGTGTGACAGTGCCGG+GGG | + | tig0022273:6312-6331 | Msa1398610:intron | 65.0% |
| CCTGCTGCCGCAACACAGAC+AGG | - | tig0022273:6659-6678 | None:intergenic | 65.0% | |
| CCTGTCTGTGTTGCGGCAGC+AGG | + | tig0022273:6656-6675 | Msa1398610:CDS | 65.0% | |
| GGGGCTCCCCGCTTCATACT+TGG | + | tig0022273:9501-9520 | Msa1398610:CDS | 65.0% | |
| !! | GGCGGTTGGGAGGTGTCCAT+TGG | - | tig0022273:10130-10149 | None:intergenic | 65.0% |
| ! | GTGGGTGTGACAGTGCCGGG+GGG | + | tig0022273:6313-6332 | Msa1398610:intron | 70.0% |
| ATTTGCGGCGGCGACGGCGG+CGG | - | tig0022273:10148-10167 | None:intergenic | 75.0% | |
| CCCATTTGCGGCGGCGACGG+CGG | - | tig0022273:10151-10170 | None:intergenic | 75.0% | |
| CCGCCGTCGCCGCCGCAAAT+GGG | + | tig0022273:10148-10167 | Msa1398610:CDS | 75.0% | |
| ! | GCCGCCGTCGCCGCCGCAAA+TGG | + | tig0022273:10147-10166 | Msa1398610:CDS | 80.0% |
| ! | CGGCGACGGCGGCGGTTGGG+AGG | - | tig0022273:10140-10159 | None:intergenic | 85.0% |
| ! | CGGCGGCGACGGCGGCGGTT+GGG | - | tig0022273:10143-10162 | None:intergenic | 85.0% |
| ! | GCGGCGGCGACGGCGGCGGT+TGG | - | tig0022273:10144-10163 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022273 | gene | 3169 | 10885 | 3169 | ID=Msa1398610;Name=Msa1398610 |
| tig0022273 | mRNA | 3169 | 10885 | 3169 | ID=Msa1398610-mRNA-1;Parent=Msa1398610;Name=Msa1398610-mRNA-1;_AED=0.21;_eAED=0.21;_QI=114|0.45|0.41|0.83|1|1|12|36|602 |
| tig0022273 | exon | 3169 | 3291 | 3169 | ID=Msa1398610-mRNA-1:exon:16738;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 3796 | 3862 | 3796 | ID=Msa1398610-mRNA-1:exon:16739;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 3974 | 4117 | 3974 | ID=Msa1398610-mRNA-1:exon:16740;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 4245 | 4294 | 4245 | ID=Msa1398610-mRNA-1:exon:16741;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 4391 | 4523 | 4391 | ID=Msa1398610-mRNA-1:exon:16742;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 6610 | 6717 | 6610 | ID=Msa1398610-mRNA-1:exon:16743;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 8904 | 8949 | 8904 | ID=Msa1398610-mRNA-1:exon:16744;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 9176 | 9522 | 9176 | ID=Msa1398610-mRNA-1:exon:16745;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 9663 | 10169 | 9663 | ID=Msa1398610-mRNA-1:exon:16746;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 10282 | 10461 | 10282 | ID=Msa1398610-mRNA-1:exon:16747;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 10569 | 10651 | 10569 | ID=Msa1398610-mRNA-1:exon:16748;Parent=Msa1398610-mRNA-1 |
| tig0022273 | exon | 10715 | 10885 | 10715 | ID=Msa1398610-mRNA-1:exon:16749;Parent=Msa1398610-mRNA-1 |
| tig0022273 | five_prime_UTR | 3169 | 3282 | 3169 | ID=Msa1398610-mRNA-1:five_prime_utr;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 3283 | 3291 | 3283 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 3796 | 3862 | 3796 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 3974 | 4117 | 3974 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 4245 | 4294 | 4245 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 4391 | 4523 | 4391 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 6610 | 6717 | 6610 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 8904 | 8949 | 8904 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 9176 | 9522 | 9176 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 9663 | 10169 | 9663 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 10282 | 10461 | 10282 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 10569 | 10651 | 10569 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | CDS | 10715 | 10849 | 10715 | ID=Msa1398610-mRNA-1:cds;Parent=Msa1398610-mRNA-1 |
| tig0022273 | three_prime_UTR | 10850 | 10885 | 10850 | ID=Msa1398610-mRNA-1:three_prime_utr;Parent=Msa1398610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
