Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465200 | AEX20345.1 | 68.936 | 470 | 73 | 4 | 12 | 421 | 3 | 459 | 0.0 | 625 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465200 | sp|Q6XPT5|MCA7_ARATH | 30.675 | 163 | 108 | 3 | 19 | 178 | 7 | 167 | 1.30e-13 | 75.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465200 | H2EIY5 | 68.936 | 470 | 73 | 4 | 12 | 421 | 3 | 459 | 0.0 | 625 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092520 | Msa0465200 | 0.859658 | 3.552404e-63 | -8.615850e-47 |
| Msa0092550 | Msa0465200 | 0.845344 | 4.307014e-59 | -8.615850e-47 |
| Msa0092590 | Msa0465200 | 0.811333 | 7.379691e-51 | -8.615850e-47 |
| Msa0150840 | Msa0465200 | 0.804468 | 2.129039e-49 | -8.615850e-47 |
| Msa0178960 | Msa0465200 | 0.808773 | 2.626828e-50 | -8.615850e-47 |
| Msa0178970 | Msa0465200 | 0.815229 | 1.029045e-51 | -8.615850e-47 |
| Msa0180500 | Msa0465200 | 0.802268 | 6.081817e-49 | -8.615850e-47 |
| Msa0393010 | Msa0465200 | 0.873885 | 1.038953e-67 | -8.615850e-47 |
| Msa0419240 | Msa0465200 | 0.812206 | 4.764380e-51 | -8.615850e-47 |
| Msa0424320 | Msa0465200 | 0.830801 | 2.392933e-55 | -8.615850e-47 |
| Msa0465150 | Msa0465200 | 0.981784 | 1.931865e-153 | -8.615850e-47 |
| Msa0465180 | Msa0465200 | 0.931291 | 4.692526e-94 | -8.615850e-47 |
| Msa0465200 | Msa0519000 | 0.808720 | 2.695866e-50 | -8.615850e-47 |
| Msa0465200 | Msa0523940 | 0.855516 | 5.988293e-62 | -8.615850e-47 |
| Msa0465200 | Msa0562440 | 0.822793 | 1.958161e-53 | -8.615850e-47 |
| Msa0465200 | Msa0701010 | 0.832139 | 1.120992e-55 | -8.615850e-47 |
| Msa0465200 | Msa0743260 | 0.802809 | 4.703212e-49 | -8.615850e-47 |
| Msa0465200 | Msa0750650 | 0.815171 | 1.060003e-51 | -8.615850e-47 |
| Msa0465200 | Msa0768290 | 0.852680 | 3.939251e-61 | -8.615850e-47 |
| Msa0465200 | Msa0768370 | 0.836948 | 6.938730e-57 | -8.615850e-47 |
| Msa0465200 | Msa0777230 | 0.803586 | 3.248400e-49 | -8.615850e-47 |
| Msa0465200 | Msa0844440 | 0.800039 | 1.737579e-48 | -8.615850e-47 |
| Msa0465200 | Msa0844470 | 0.800195 | 1.615241e-48 | -8.615850e-47 |
| Msa0465200 | Msa0849030 | 0.801423 | 9.069080e-49 | -8.615850e-47 |
| Msa0465200 | Msa0877250 | 0.839830 | 1.253057e-57 | -8.615850e-47 |
| Msa0465200 | Msa0927380 | 0.803059 | 4.175968e-49 | -8.615850e-47 |
| Msa0465200 | Msa0966750 | 0.800152 | 1.648126e-48 | -8.615850e-47 |
| Msa0465200 | Msa0973100 | 0.801134 | 1.039100e-48 | -8.615850e-47 |
| Msa0465200 | Msa1000900 | 0.808581 | 2.886670e-50 | -8.615850e-47 |
| Msa0465200 | Msa1296940 | 0.802504 | 5.438284e-49 | -8.615850e-47 |
| Msa0465200 | Msa1306760 | 0.824431 | 8.104051e-54 | -8.615850e-47 |
| Msa0465200 | Msa1349100 | 0.801993 | 6.927153e-49 | -8.615850e-47 |
| Msa0465200 | Msa1366970 | 0.813546 | 2.423504e-51 | -8.615850e-47 |
| Msa0465200 | Msa1398610 | 0.965793 | 4.553757e-125 | -8.615850e-47 |
| Msa0278110 | Msa0465200 | 0.824447 | 8.032664e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465200 | MtrunA17_Chr3g0143041 | 78.912 | 147 | 22 | 3 | 280 | 426 | 11 | 148 | 8.42e-69 | 215 |
| Msa0465200 | MtrunA17_Chr3g0143031 | 78.912 | 147 | 22 | 3 | 280 | 426 | 11 | 148 | 8.42e-69 | 215 |
| Msa0465200 | MtrunA17_Chr3g0142551 | 75.000 | 116 | 23 | 1 | 295 | 410 | 1 | 110 | 7.31e-53 | 173 |
| Msa0465200 | MtrunA17_Chr8g0356311 | 31.293 | 147 | 96 | 3 | 19 | 162 | 7 | 151 | 8.26e-13 | 69.7 |
| Msa0465200 | MtrunA17_Chr2g0309701 | 30.968 | 155 | 102 | 3 | 11 | 162 | 2 | 154 | 1.59e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0465200 | AT1G79310.1 | 30.675 | 163 | 108 | 3 | 19 | 178 | 7 | 167 | 1.32e-14 | 75.5 |
| Msa0465200 | AT1G79340.1 | 30.201 | 149 | 99 | 3 | 17 | 162 | 5 | 151 | 1.64e-11 | 66.2 |
Find 115 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGACTGTTGTAATTC+TGG | 0.163467 | 3_3:-65541443 | Msa0465200:CDS |
| GGAAAATATCAAGGTGTTTC+AGG | 0.207709 | 3_3:-65541857 | Msa0465200:CDS |
| TTGGAATTTAATATTGTATC+TGG | 0.232262 | 3_3:-65541065 | Msa0465200:CDS |
| CTTTCAACTTTCTGCTCCTT+TGG | 0.234586 | 3_3:+65540800 | None:intergenic |
| CATGTCTGGTCATGGATTCT+TGG | 0.236373 | 3_3:-65541731 | Msa0465200:CDS |
| GATTTATAGACACTCCTTCT+TGG | 0.287132 | 3_3:+65541468 | None:intergenic |
| ACCGGGTATTCAAATTCTTT+TGG | 0.291404 | 3_3:+65540743 | None:intergenic |
| ATCAGCATCCTTGTTGGTTA+TGG | 0.312811 | 3_3:-65541691 | Msa0465200:CDS |
| TGCAAGTTCTCACCGAGTTT+GGG | 0.317499 | 3_3:-65541226 | Msa0465200:CDS |
| GTGCAAGTTCTCACCGAGTT+TGG | 0.325486 | 3_3:-65541227 | Msa0465200:CDS |
| GGAAGAAATCACGGTTTATC+TGG | 0.340742 | 3_3:-65541983 | Msa0465200:CDS |
| AAACTTCGATATAATGATAA+TGG | 0.343523 | 3_3:-65541809 | Msa0465200:CDS |
| GCGGTTGGGAGGTGTCCATT+GGG | 0.345797 | 3_3:+65541036 | None:intergenic |
| GCGGCGGCGACGGCGGCGGT+TGG | 0.349269 | 3_3:+65541021 | None:intergenic |
| TTATCTACTTCTCTACTGAT+AGG | 0.355645 | 3_3:-65542008 | Msa0465200:CDS |
| CGGCGGCGACGGCGGCGGTT+GGG | 0.367039 | 3_3:+65541022 | None:intergenic |
| TTTCTAACAGCAAGCATACT+TGG | 0.368412 | 3_3:-65540457 | Msa0465200:intron |
| GCCGCCGTCGCCGCCGCAAA+TGG | 0.372217 | 3_3:-65541015 | Msa0465200:CDS |
| GGCGGTTGGGAGGTGTCCAT+TGG | 0.377647 | 3_3:+65541035 | None:intergenic |
| GCTCCTTTGGCTTCTTCCCA+TGG | 0.377659 | 3_3:+65540813 | None:intergenic |
| TTCAACGTCTCTTCGTAAAC+CGG | 0.384406 | 3_3:+65540725 | None:intergenic |
| CCCCAAGGGGTGACCTTTGT+GGG | 0.395961 | 3_3:+65541346 | None:intergenic |
| TAAGATCAAACCTTTGAAAC+TGG | 0.396504 | 3_3:-65541201 | Msa0465200:CDS |
| CTCGCCTCATCAGGTAGAAC+TGG | 0.406533 | 3_3:+65540546 | None:intergenic |
| TCCCCAAGGGGTGACCTTTG+TGG | 0.416052 | 3_3:+65541345 | None:intergenic |
| TCCCACAAAGGTCACCCCTT+GGG | 0.419902 | 3_3:-65541347 | Msa0465200:CDS |
| AGACTTGGGATCAAAGTTAT+CGG | 0.427746 | 3_3:-65541267 | Msa0465200:CDS |
| TTTCAGGACGTTGTTGTAAA+GGG | 0.431657 | 3_3:-65541841 | Msa0465200:CDS |
| CCGCCGTCGCCGCCGCAAAT+GGG | 0.434409 | 3_3:-65541014 | Msa0465200:intron |
| ATTTGCGGCGGCGACGGCGG+CGG | 0.445469 | 3_3:+65541017 | None:intergenic |
| TTGTTGGTTATGGTGAGGAC+GGG | 0.451207 | 3_3:-65541681 | Msa0465200:CDS |
| CGAACATTGTGGATTTAAAG+AGG | 0.452704 | 3_3:-65541878 | Msa0465200:CDS |
| CTAAGATCAGAACAGGAACC+AGG | 0.455410 | 3_3:+65541946 | None:intergenic |
| GTTTCAGGACGTTGTTGTAA+AGG | 0.461525 | 3_3:-65541842 | Msa0465200:CDS |
| AAAGAGGAGCTGTTACTGAT+AGG | 0.462033 | 3_3:-65540331 | Msa0465200:exon |
| GAGGGAGAGTTTCTTTATGA+TGG | 0.464401 | 3_3:-65540773 | Msa0465200:CDS |
| GGGGCTCCCCGCTTCATACT+TGG | 0.465017 | 3_3:-65541661 | Msa0465200:intron |
| AGGTTGAGTTTACCCATTTG+CGG | 0.466017 | 3_3:+65541002 | None:intergenic |
| CCCATTTGCGGCGGCGACGG+CGG | 0.466443 | 3_3:+65541014 | None:intergenic |
| AACGGAATCAGCATCCTTGT+TGG | 0.477260 | 3_3:-65541697 | Msa0465200:CDS |
| TTTGGCTTCTTCCCATGGAT+AGG | 0.482517 | 3_3:+65540818 | None:intergenic |
| TCAGATCGCTACGGAATTGA+AGG | 0.484029 | 3_3:-65541141 | Msa0465200:CDS |
| ATCTGTTCCACCAGTTTCAA+AGG | 0.486649 | 3_3:+65541191 | None:intergenic |
| TTACCCATTTGCGGCGGCGA+CGG | 0.492449 | 3_3:+65541011 | None:intergenic |
| AATGGATCAGCTCTTTCAAA+TGG | 0.494203 | 3_3:-65541791 | Msa0465200:CDS |
| CAAAATGTAGAAAGCACAAA+GGG | 0.497061 | 3_3:-65540845 | Msa0465200:CDS |
| GCCAAAAGAATTTGAATACC+CGG | 0.499635 | 3_3:-65540744 | Msa0465200:CDS |
| CGGCGACGGCGGCGGTTGGG+AGG | 0.499742 | 3_3:+65541025 | None:intergenic |
| TTCTTGGACAAGAAGAGAAA+CGG | 0.501595 | 3_3:-65541715 | Msa0465200:CDS |
| CATACTTGGAGCATGAGAAA+AGG | 0.506185 | 3_3:-65540443 | Msa0465200:CDS |
| CTGGTTGTATTAACCTACCC+TGG | 0.509166 | 3_3:-65541964 | Msa0465200:CDS |
| AAATTTACCAAGTATGAAGC+GGG | 0.511628 | 3_3:+65541654 | None:intergenic |
| CTTGTTGGTTATGGTGAGGA+CGG | 0.513523 | 3_3:-65541682 | Msa0465200:CDS |
| TTGAGAAAGGGAAGGGAAAG+AGG | 0.517216 | 3_3:-65540347 | Msa0465200:CDS |
| ACTGACAATCACAACACAAA+AGG | 0.518809 | 3_3:+65541087 | None:intergenic |
| TTTGTGTTGTGATTGTCAGT+TGG | 0.524134 | 3_3:-65541084 | Msa0465200:CDS |
| TTCCCACAAAGGTCACCCCT+TGG | 0.524483 | 3_3:-65541348 | Msa0465200:CDS |
| ACCGCATGTCATTCACGTAC+AGG | 0.530170 | 3_3:-65541314 | Msa0465200:CDS |
| GATCAAACCTTTGAAACTGG+TGG | 0.533811 | 3_3:-65541198 | Msa0465200:CDS |
| AACTTCTTCATGAGAAGAAG+CGG | 0.536690 | 3_3:-65540874 | Msa0465200:CDS |
| GAAGCACAAGTTGACTTTGA+AGG | 0.542314 | 3_3:+65541368 | None:intergenic |
| GCTCTTTCAAATGGCTAGGA+AGG | 0.543876 | 3_3:-65541782 | Msa0465200:CDS |
| TGCGGTAAATACCGTCCCCA+AGG | 0.544635 | 3_3:+65541331 | None:intergenic |
| GATCAAATTGATTTACAACC+TGG | 0.548767 | 3_3:-65541110 | Msa0465200:CDS |
| GAGAACTTGCACAAGTGCCC+AGG | 0.554885 | 3_3:+65541238 | None:intergenic |
| ACCATGCTATGCTATGCTCT+TGG | 0.556857 | 3_3:-65540303 | Msa0465200:three_prime_UTR |
| TATCTACTTCTCTACTGATA+GGG | 0.557494 | 3_3:-65542007 | Msa0465200:CDS |
| CAGAAAGTTGAAAGCACTGA+GGG | 0.558826 | 3_3:-65540791 | Msa0465200:CDS |
| TACGGAATTGAAGGTGGGAA+TGG | 0.562702 | 3_3:-65541132 | Msa0465200:CDS |
| AAATAATCAAGATCGTTGCT+TGG | 0.565855 | 3_3:+65541916 | None:intergenic |
| CCCACAAAGGTCACCCCTTG+GGG | 0.569868 | 3_3:-65541346 | Msa0465200:CDS |
| ATTTAAAGAGGAAAATATCA+AGG | 0.576556 | 3_3:-65541866 | Msa0465200:CDS |
| TCAACGTCTCTTCGTAAACC+GGG | 0.579217 | 3_3:+65540726 | None:intergenic |
| TAGATACAATAGACCTCAAG+TGG | 0.580845 | 3_3:-65540572 | Msa0465200:CDS |
| GCGGTAAATACCGTCCCCAA+GGG | 0.585381 | 3_3:+65541332 | None:intergenic |
| GTTTACGAAGAGACGTTGAA+AGG | 0.591927 | 3_3:-65540722 | Msa0465200:intron |
| AAAATTTACCAAGTATGAAG+CGG | 0.593986 | 3_3:+65541653 | None:intergenic |
| CAATCACAACACAAAAGGCC+AGG | 0.594893 | 3_3:+65541092 | None:intergenic |
| GATCGCTACGGAATTGAAGG+TGG | 0.595976 | 3_3:-65541138 | Msa0465200:CDS |
| TGTTGGTTATGGTGAGGACG+GGG | 0.597630 | 3_3:-65541680 | Msa0465200:CDS |
| TGTATCTGGACTCTCCCCAA+TGG | 0.598950 | 3_3:-65541051 | Msa0465200:CDS |
| CATCCTTGTTGGTTATGGTG+AGG | 0.606343 | 3_3:-65541686 | Msa0465200:CDS |
| TCAACTTGTGCTTCCCACAA+AGG | 0.607010 | 3_3:-65541359 | Msa0465200:CDS |
| TAAGCAATATCCTAAAACTG+AGG | 0.613277 | 3_3:-65541399 | Msa0465200:CDS |
| CTACTTCTCTACTGATAGGG+AGG | 0.619828 | 3_3:-65542004 | Msa0465200:CDS |
| CAAAGGTCACCCCTTGGGGA+CGG | 0.620972 | 3_3:-65541342 | Msa0465200:CDS |
| ATCGCTACGGAATTGAAGGT+GGG | 0.624679 | 3_3:-65541137 | Msa0465200:CDS |
| CGGTTGGGAGGTGTCCATTG+GGG | 0.625154 | 3_3:+65541037 | None:intergenic |
| GCCAAGAGCATAGCATAGCA+TGG | 0.625974 | 3_3:+65540302 | None:intergenic |
| TGATAGGGAGGAAGAAATCA+CGG | 0.628484 | 3_3:-65541992 | Msa0465200:CDS |
| CGTCCTCACCATAACCAACA+AGG | 0.629344 | 3_3:+65541683 | None:intergenic |
| GCACAAGTTGACTTTGAAGG+AGG | 0.634270 | 3_3:+65541371 | None:intergenic |
| AGAGCGTCTTGAGAAAGGGA+AGG | 0.635457 | 3_3:-65540355 | Msa0465200:CDS |
| AAATGCCTCATCGAACATTG+TGG | 0.636619 | 3_3:-65541889 | Msa0465200:CDS |
| TAAATCCACAATGTTCGATG+AGG | 0.640029 | 3_3:+65541884 | None:intergenic |
| GAGCGTCTTGAGAAAGGGAA+GGG | 0.642510 | 3_3:-65540354 | Msa0465200:CDS |
| ATCAGCTCTTTCAAATGGCT+AGG | 0.643553 | 3_3:-65541786 | Msa0465200:CDS |
| TTTGATCTTAGTCCCAAACT+CGG | 0.645054 | 3_3:+65541214 | None:intergenic |
| GCAAAATGTAGAAAGCACAA+AGG | 0.650373 | 3_3:-65540846 | Msa0465200:CDS |
| GTAGAACTGGACACCACTTG+AGG | 0.654086 | 3_3:+65540559 | None:intergenic |
| GTGTCCAGTTCTACCTGATG+AGG | 0.656713 | 3_3:-65540550 | Msa0465200:CDS |
| GAAGCAGAATCAGATCGCTA+CGG | 0.656805 | 3_3:-65541150 | Msa0465200:CDS |
| ATCAGAACAGGAACCAGGGT+AGG | 0.657902 | 3_3:+65541951 | None:intergenic |
| AAATGTAGAAAGCACAAAGG+GGG | 0.666895 | 3_3:-65540843 | Msa0465200:CDS |
| TCCTGTACGTGAATGACATG+CGG | 0.667707 | 3_3:+65541313 | None:intergenic |
| TAAGATCAGAACAGGAACCA+GGG | 0.668398 | 3_3:+65541947 | None:intergenic |
| TCTTCATGAGAAGAAGCGGA+AGG | 0.675917 | 3_3:-65540870 | Msa0465200:CDS |
| TATCCATGGGAAGAAGCCAA+AGG | 0.679810 | 3_3:-65540816 | Msa0465200:CDS |
| TTGAGTTTACCCATTTGCGG+CGG | 0.683993 | 3_3:+65541005 | None:intergenic |
| CGGTAAATACCGTCCCCAAG+GGG | 0.688788 | 3_3:+65541333 | None:intergenic |
| ATGCAGAGGAAAAGAAGCGG+TGG | 0.691365 | 3_3:-65540398 | Msa0465200:CDS |
| AGCATGCAGAGGAAAAGAAG+CGG | 0.699048 | 3_3:-65540401 | Msa0465200:CDS |
| AATTTACCAAGTATGAAGCG+GGG | 0.713224 | 3_3:+65541655 | None:intergenic |
| GCAGAAAGTTGAAAGCACTG+AGG | 0.716241 | 3_3:-65540792 | Msa0465200:CDS |
| AAAATGTAGAAAGCACAAAG+GGG | 0.728665 | 3_3:-65540844 | Msa0465200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAAATTTAATTAGAGA+CGG | + | chr3_3:65540790-65540809 | None:intergenic | 15.0% |
| !! | AAAACAAATTTAATTAGAGA+CGG | + | chr3_3:65540790-65540809 | None:intergenic | 15.0% |
| !! | ATTTAAAGAGGAAAATATCA+AGG | - | chr3_3:65540451-65540470 | Msa0465200:intron | 20.0% |
| !! | AAACTTCGATATAATGATAA+TGG | - | chr3_3:65540508-65540527 | Msa0465200:intron | 20.0% |
| !! | AACACTACAAAAAAAAATGT+GGG | + | chr3_3:65540739-65540758 | None:intergenic | 20.0% |
| !! | AAACACTACAAAAAAAAATG+TGG | + | chr3_3:65540740-65540759 | None:intergenic | 20.0% |
| !! | TTGGAATTTAATATTGTATC+TGG | - | chr3_3:65541252-65541271 | Msa0465200:CDS | 20.0% |
| !! | TGAAATAATAAGAAACCAAA+GGG | + | chr3_3:65541405-65541424 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAAACCAA+AGG | + | chr3_3:65541406-65541425 | None:intergenic | 20.0% |
| !! | ATTTAAAGAGGAAAATATCA+AGG | - | chr3_3:65540451-65540470 | Msa0465200:intron | 20.0% |
| !! | AAACTTCGATATAATGATAA+TGG | - | chr3_3:65540508-65540527 | Msa0465200:intron | 20.0% |
| !! | AACACTACAAAAAAAAATGT+GGG | + | chr3_3:65540739-65540758 | None:intergenic | 20.0% |
| !! | AAACACTACAAAAAAAAATG+TGG | + | chr3_3:65540740-65540759 | None:intergenic | 20.0% |
| !! | TTGGAATTTAATATTGTATC+TGG | - | chr3_3:65541252-65541271 | Msa0465200:CDS | 20.0% |
| !! | TGAAATAATAAGAAACCAAA+GGG | + | chr3_3:65541405-65541424 | None:intergenic | 20.0% |
| !! | ATGAAATAATAAGAAACCAA+AGG | + | chr3_3:65541406-65541425 | None:intergenic | 20.0% |
| !!! | AAATTTTCTAAGATCAGAAC+AGG | + | chr3_3:65540381-65540400 | None:intergenic | 25.0% |
| ! | AAAATTTACCAAGTATGAAG+CGG | + | chr3_3:65540667-65540686 | None:intergenic | 25.0% |
| ! | TTTAAACTCAATTGAATAGC+AGG | + | chr3_3:65540713-65540732 | None:intergenic | 25.0% |
| !!! | TTTTTGTAGTGTTTAGTTTG+AGG | - | chr3_3:65540746-65540765 | Msa0465200:CDS | 25.0% |
| ! | TTTAATTAGAGACGGAAAAA+AGG | + | chr3_3:65540782-65540801 | None:intergenic | 25.0% |
| !!! | AGATCTTAAGCATTTTTTAG+AGG | - | chr3_3:65540822-65540841 | Msa0465200:CDS | 25.0% |
| ! | AAGAATACTTGAATGAGAAT+AGG | + | chr3_3:65541344-65541363 | None:intergenic | 25.0% |
| !!! | AAATTTTCTAAGATCAGAAC+AGG | + | chr3_3:65540381-65540400 | None:intergenic | 25.0% |
| ! | AAAATTTACCAAGTATGAAG+CGG | + | chr3_3:65540667-65540686 | None:intergenic | 25.0% |
| ! | TTTAAACTCAATTGAATAGC+AGG | + | chr3_3:65540713-65540732 | None:intergenic | 25.0% |
| !!! | TTTTTGTAGTGTTTAGTTTG+AGG | - | chr3_3:65540746-65540765 | Msa0465200:CDS | 25.0% |
| ! | TTTAATTAGAGACGGAAAAA+AGG | + | chr3_3:65540782-65540801 | None:intergenic | 25.0% |
| !!! | AGATCTTAAGCATTTTTTAG+AGG | - | chr3_3:65540822-65540841 | Msa0465200:CDS | 25.0% |
| ! | AAGAATACTTGAATGAGAAT+AGG | + | chr3_3:65541344-65541363 | None:intergenic | 25.0% |
| TTATCTACTTCTCTACTGAT+AGG | - | chr3_3:65540309-65540328 | Msa0465200:three_prime_UTR | 30.0% | |
| TATCTACTTCTCTACTGATA+GGG | - | chr3_3:65540310-65540329 | Msa0465200:three_prime_UTR | 30.0% | |
| AAATAATCAAGATCGTTGCT+TGG | + | chr3_3:65540404-65540423 | None:intergenic | 30.0% | |
| !!! | TCTCTCTTTTTTTACATGTC+TGG | - | chr3_3:65540572-65540591 | Msa0465200:CDS | 30.0% |
| !!! | TTTTTTTACATGTCTGGTCA+TGG | - | chr3_3:65540578-65540597 | Msa0465200:CDS | 30.0% |
| AAATTTACCAAGTATGAAGC+GGG | + | chr3_3:65540666-65540685 | None:intergenic | 30.0% | |
| TTCTTTGACTGTTGTAATTC+TGG | - | chr3_3:65540874-65540893 | Msa0465200:CDS | 30.0% | |
| TAAGCAATATCCTAAAACTG+AGG | - | chr3_3:65540918-65540937 | Msa0465200:intron | 30.0% | |
| !!! | AAAGTTATCGGTTTTTACCT+GGG | - | chr3_3:65541062-65541081 | Msa0465200:CDS | 30.0% |
| !! | TAAGATCAAACCTTTGAAAC+TGG | - | chr3_3:65541116-65541135 | Msa0465200:CDS | 30.0% |
| ! | GATCAAATTGATTTACAACC+TGG | - | chr3_3:65541207-65541226 | Msa0465200:CDS | 30.0% |
| ACTTGAATGAGAATAGGATT+AGG | + | chr3_3:65541338-65541357 | None:intergenic | 30.0% | |
| ! | CAAAATGTAGAAAGCACAAA+GGG | - | chr3_3:65541472-65541491 | Msa0465200:CDS | 30.0% |
| ! | AAAATGTAGAAAGCACAAAG+GGG | - | chr3_3:65541473-65541492 | Msa0465200:CDS | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | - | chr3_3:65541689-65541708 | Msa0465200:CDS | 30.0% |
| TTATCTACTTCTCTACTGAT+AGG | - | chr3_3:65540309-65540328 | Msa0465200:three_prime_UTR | 30.0% | |
| TATCTACTTCTCTACTGATA+GGG | - | chr3_3:65540310-65540329 | Msa0465200:three_prime_UTR | 30.0% | |
| AAATAATCAAGATCGTTGCT+TGG | + | chr3_3:65540404-65540423 | None:intergenic | 30.0% | |
| !!! | TCTCTCTTTTTTTACATGTC+TGG | - | chr3_3:65540572-65540591 | Msa0465200:CDS | 30.0% |
| !!! | TTTTTTTACATGTCTGGTCA+TGG | - | chr3_3:65540578-65540597 | Msa0465200:CDS | 30.0% |
| AAATTTACCAAGTATGAAGC+GGG | + | chr3_3:65540666-65540685 | None:intergenic | 30.0% | |
| TTCTTTGACTGTTGTAATTC+TGG | - | chr3_3:65540874-65540893 | Msa0465200:CDS | 30.0% | |
| TAAGCAATATCCTAAAACTG+AGG | - | chr3_3:65540918-65540937 | Msa0465200:intron | 30.0% | |
| !!! | AAAGTTATCGGTTTTTACCT+GGG | - | chr3_3:65541062-65541081 | Msa0465200:CDS | 30.0% |
| !! | TAAGATCAAACCTTTGAAAC+TGG | - | chr3_3:65541116-65541135 | Msa0465200:CDS | 30.0% |
| ! | GATCAAATTGATTTACAACC+TGG | - | chr3_3:65541207-65541226 | Msa0465200:CDS | 30.0% |
| ACTTGAATGAGAATAGGATT+AGG | + | chr3_3:65541338-65541357 | None:intergenic | 30.0% | |
| ! | CAAAATGTAGAAAGCACAAA+GGG | - | chr3_3:65541472-65541491 | Msa0465200:CDS | 30.0% |
| ! | AAAATGTAGAAAGCACAAAG+GGG | - | chr3_3:65541473-65541492 | Msa0465200:CDS | 30.0% |
| ! | GTTTCTTCTCTTGTTTCATA+TGG | - | chr3_3:65541689-65541708 | Msa0465200:CDS | 30.0% |
| TAAATCCACAATGTTCGATG+AGG | + | chr3_3:65540436-65540455 | None:intergenic | 35.0% | |
| CGAACATTGTGGATTTAAAG+AGG | - | chr3_3:65540439-65540458 | Msa0465200:CDS | 35.0% | |
| ! | GGAAAATATCAAGGTGTTTC+AGG | - | chr3_3:65540460-65540479 | Msa0465200:intron | 35.0% |
| TTTCAGGACGTTGTTGTAAA+GGG | - | chr3_3:65540476-65540495 | Msa0465200:intron | 35.0% | |
| AATGGATCAGCTCTTTCAAA+TGG | - | chr3_3:65540526-65540545 | Msa0465200:intron | 35.0% | |
| !!! | AAAGAGAGAACCTCCTTTTT+TGG | + | chr3_3:65540561-65540580 | None:intergenic | 35.0% |
| TTCTTGGACAAGAAGAGAAA+CGG | - | chr3_3:65540602-65540621 | Msa0465200:intron | 35.0% | |
| AATTTACCAAGTATGAAGCG+GGG | + | chr3_3:65540665-65540684 | None:intergenic | 35.0% | |
| !! | TTTTTAGAGGAAGTCCAAGA+AGG | - | chr3_3:65540835-65540854 | Msa0465200:CDS | 35.0% |
| GATTTATAGACACTCCTTCT+TGG | + | chr3_3:65540852-65540871 | None:intergenic | 35.0% | |
| !!! | TGCTATTTTCATGCAAGACT+TGG | - | chr3_3:65541035-65541054 | Msa0465200:CDS | 35.0% |
| !! | GCTATTTTCATGCAAGACTT+GGG | - | chr3_3:65541036-65541055 | Msa0465200:CDS | 35.0% |
| AGACTTGGGATCAAAGTTAT+CGG | - | chr3_3:65541050-65541069 | Msa0465200:CDS | 35.0% | |
| !!! | CAAAGTTATCGGTTTTTACC+TGG | - | chr3_3:65541061-65541080 | Msa0465200:CDS | 35.0% |
| TTTGATCTTAGTCCCAAACT+CGG | + | chr3_3:65541106-65541125 | None:intergenic | 35.0% | |
| ACTGACAATCACAACACAAA+AGG | + | chr3_3:65541233-65541252 | None:intergenic | 35.0% | |
| TTTGTGTTGTGATTGTCAGT+TGG | - | chr3_3:65541233-65541252 | Msa0465200:CDS | 35.0% | |
| CAAATAATAACCTCACCCTT+TGG | - | chr3_3:65541387-65541406 | Msa0465200:CDS | 35.0% | |
| TAATAAGAAACCAAAGGGTG+AGG | + | chr3_3:65541400-65541419 | None:intergenic | 35.0% | |
| AACTTCTTCATGAGAAGAAG+CGG | - | chr3_3:65541443-65541462 | Msa0465200:CDS | 35.0% | |
| ! | GCAAAATGTAGAAAGCACAA+AGG | - | chr3_3:65541471-65541490 | Msa0465200:CDS | 35.0% |
| ! | AAATGTAGAAAGCACAAAGG+GGG | - | chr3_3:65541474-65541493 | Msa0465200:CDS | 35.0% |
| GCCAAAAGAATTTGAATACC+CGG | - | chr3_3:65541573-65541592 | Msa0465200:intron | 35.0% | |
| ! | ACCGGGTATTCAAATTCTTT+TGG | + | chr3_3:65541577-65541596 | None:intergenic | 35.0% |
| GAAGAAACAAACATAAGCTG+AGG | + | chr3_3:65541677-65541696 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | - | chr3_3:65541745-65541764 | Msa0465200:CDS | 35.0% | |
| GCTGTTAGAAAGACATTGAT+CGG | + | chr3_3:65541851-65541870 | None:intergenic | 35.0% | |
| TTTCTAACAGCAAGCATACT+TGG | - | chr3_3:65541860-65541879 | Msa0465200:CDS | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | - | chr3_3:65541958-65541977 | Msa0465200:CDS | 35.0% |
| TAAATCCACAATGTTCGATG+AGG | + | chr3_3:65540436-65540455 | None:intergenic | 35.0% | |
| CGAACATTGTGGATTTAAAG+AGG | - | chr3_3:65540439-65540458 | Msa0465200:CDS | 35.0% | |
| ! | GGAAAATATCAAGGTGTTTC+AGG | - | chr3_3:65540460-65540479 | Msa0465200:intron | 35.0% |
| TTTCAGGACGTTGTTGTAAA+GGG | - | chr3_3:65540476-65540495 | Msa0465200:intron | 35.0% | |
| AATGGATCAGCTCTTTCAAA+TGG | - | chr3_3:65540526-65540545 | Msa0465200:intron | 35.0% | |
| !!! | AAAGAGAGAACCTCCTTTTT+TGG | + | chr3_3:65540561-65540580 | None:intergenic | 35.0% |
| TTCTTGGACAAGAAGAGAAA+CGG | - | chr3_3:65540602-65540621 | Msa0465200:intron | 35.0% | |
| AATTTACCAAGTATGAAGCG+GGG | + | chr3_3:65540665-65540684 | None:intergenic | 35.0% | |
| !! | TTTTTAGAGGAAGTCCAAGA+AGG | - | chr3_3:65540835-65540854 | Msa0465200:CDS | 35.0% |
| GATTTATAGACACTCCTTCT+TGG | + | chr3_3:65540852-65540871 | None:intergenic | 35.0% | |
| !!! | TGCTATTTTCATGCAAGACT+TGG | - | chr3_3:65541035-65541054 | Msa0465200:CDS | 35.0% |
| !! | GCTATTTTCATGCAAGACTT+GGG | - | chr3_3:65541036-65541055 | Msa0465200:CDS | 35.0% |
| AGACTTGGGATCAAAGTTAT+CGG | - | chr3_3:65541050-65541069 | Msa0465200:CDS | 35.0% | |
| !!! | CAAAGTTATCGGTTTTTACC+TGG | - | chr3_3:65541061-65541080 | Msa0465200:CDS | 35.0% |
| TTTGATCTTAGTCCCAAACT+CGG | + | chr3_3:65541106-65541125 | None:intergenic | 35.0% | |
| ACTGACAATCACAACACAAA+AGG | + | chr3_3:65541233-65541252 | None:intergenic | 35.0% | |
| TTTGTGTTGTGATTGTCAGT+TGG | - | chr3_3:65541233-65541252 | Msa0465200:CDS | 35.0% | |
| CAAATAATAACCTCACCCTT+TGG | - | chr3_3:65541387-65541406 | Msa0465200:CDS | 35.0% | |
| TAATAAGAAACCAAAGGGTG+AGG | + | chr3_3:65541400-65541419 | None:intergenic | 35.0% | |
| AACTTCTTCATGAGAAGAAG+CGG | - | chr3_3:65541443-65541462 | Msa0465200:CDS | 35.0% | |
| ! | GCAAAATGTAGAAAGCACAA+AGG | - | chr3_3:65541471-65541490 | Msa0465200:CDS | 35.0% |
| ! | AAATGTAGAAAGCACAAAGG+GGG | - | chr3_3:65541474-65541493 | Msa0465200:CDS | 35.0% |
| GCCAAAAGAATTTGAATACC+CGG | - | chr3_3:65541573-65541592 | Msa0465200:intron | 35.0% | |
| ! | ACCGGGTATTCAAATTCTTT+TGG | + | chr3_3:65541577-65541596 | None:intergenic | 35.0% |
| GAAGAAACAAACATAAGCTG+AGG | + | chr3_3:65541677-65541696 | None:intergenic | 35.0% | |
| TAGATACAATAGACCTCAAG+TGG | - | chr3_3:65541745-65541764 | Msa0465200:CDS | 35.0% | |
| GCTGTTAGAAAGACATTGAT+CGG | + | chr3_3:65541851-65541870 | None:intergenic | 35.0% | |
| TTTCTAACAGCAAGCATACT+TGG | - | chr3_3:65541860-65541879 | Msa0465200:CDS | 35.0% | |
| !! | AAAAAGAGCGTCTTGAGAAA+GGG | - | chr3_3:65541958-65541977 | Msa0465200:CDS | 35.0% |
| TGATAGGGAGGAAGAAATCA+CGG | - | chr3_3:65540325-65540344 | Msa0465200:exon | 40.0% | |
| GGAAGAAATCACGGTTTATC+TGG | - | chr3_3:65540334-65540353 | Msa0465200:exon | 40.0% | |
| TAAGATCAGAACAGGAACCA+GGG | + | chr3_3:65540373-65540392 | None:intergenic | 40.0% | |
| AAATGCCTCATCGAACATTG+TGG | - | chr3_3:65540428-65540447 | Msa0465200:CDS | 40.0% | |
| GTTTCAGGACGTTGTTGTAA+AGG | - | chr3_3:65540475-65540494 | Msa0465200:intron | 40.0% | |
| ATCAGCTCTTTCAAATGGCT+AGG | - | chr3_3:65540531-65540550 | Msa0465200:intron | 40.0% | |
| ! | ATCAGCATCCTTGTTGGTTA+TGG | - | chr3_3:65540626-65540645 | Msa0465200:intron | 40.0% |
| ! | GAAGCACAAGTTGACTTTGA+AGG | + | chr3_3:65540952-65540971 | None:intergenic | 40.0% |
| !! | GATCAAACCTTTGAAACTGG+TGG | - | chr3_3:65541119-65541138 | Msa0465200:CDS | 40.0% |
| ATCTGTTCCACCAGTTTCAA+AGG | + | chr3_3:65541129-65541148 | None:intergenic | 40.0% | |
| !! | GATTCTGCTTCGTTTTAGCA+TGG | + | chr3_3:65541158-65541177 | None:intergenic | 40.0% |
| AGGTTGAGTTTACCCATTTG+CGG | + | chr3_3:65541318-65541337 | None:intergenic | 40.0% | |
| CTTTCAACTTTCTGCTCCTT+TGG | + | chr3_3:65541520-65541539 | None:intergenic | 40.0% | |
| !! | CAGAAAGTTGAAAGCACTGA+GGG | - | chr3_3:65541526-65541545 | Msa0465200:intron | 40.0% |
| GAGGGAGAGTTTCTTTATGA+TGG | - | chr3_3:65541544-65541563 | Msa0465200:intron | 40.0% | |
| TTCAACGTCTCTTCGTAAAC+CGG | + | chr3_3:65541595-65541614 | None:intergenic | 40.0% | |
| GTTTACGAAGAGACGTTGAA+AGG | - | chr3_3:65541595-65541614 | Msa0465200:intron | 40.0% | |
| CATACTTGGAGCATGAGAAA+AGG | - | chr3_3:65541874-65541893 | Msa0465200:CDS | 40.0% | |
| ! | ACTCTTCAAAAAGCATGCAG+AGG | - | chr3_3:65541905-65541924 | Msa0465200:CDS | 40.0% |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | - | chr3_3:65541957-65541976 | Msa0465200:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | - | chr3_3:65541986-65542005 | Msa0465200:CDS | 40.0% | |
| TGATAGGGAGGAAGAAATCA+CGG | - | chr3_3:65540325-65540344 | Msa0465200:exon | 40.0% | |
| GGAAGAAATCACGGTTTATC+TGG | - | chr3_3:65540334-65540353 | Msa0465200:exon | 40.0% | |
| TAAGATCAGAACAGGAACCA+GGG | + | chr3_3:65540373-65540392 | None:intergenic | 40.0% | |
| AAATGCCTCATCGAACATTG+TGG | - | chr3_3:65540428-65540447 | Msa0465200:CDS | 40.0% | |
| GTTTCAGGACGTTGTTGTAA+AGG | - | chr3_3:65540475-65540494 | Msa0465200:intron | 40.0% | |
| ATCAGCTCTTTCAAATGGCT+AGG | - | chr3_3:65540531-65540550 | Msa0465200:intron | 40.0% | |
| ! | ATCAGCATCCTTGTTGGTTA+TGG | - | chr3_3:65540626-65540645 | Msa0465200:intron | 40.0% |
| ! | GAAGCACAAGTTGACTTTGA+AGG | + | chr3_3:65540952-65540971 | None:intergenic | 40.0% |
| !! | GATCAAACCTTTGAAACTGG+TGG | - | chr3_3:65541119-65541138 | Msa0465200:CDS | 40.0% |
| ATCTGTTCCACCAGTTTCAA+AGG | + | chr3_3:65541129-65541148 | None:intergenic | 40.0% | |
| !! | GATTCTGCTTCGTTTTAGCA+TGG | + | chr3_3:65541158-65541177 | None:intergenic | 40.0% |
| AGGTTGAGTTTACCCATTTG+CGG | + | chr3_3:65541318-65541337 | None:intergenic | 40.0% | |
| CTTTCAACTTTCTGCTCCTT+TGG | + | chr3_3:65541520-65541539 | None:intergenic | 40.0% | |
| !! | CAGAAAGTTGAAAGCACTGA+GGG | - | chr3_3:65541526-65541545 | Msa0465200:intron | 40.0% |
| GAGGGAGAGTTTCTTTATGA+TGG | - | chr3_3:65541544-65541563 | Msa0465200:intron | 40.0% | |
| TTCAACGTCTCTTCGTAAAC+CGG | + | chr3_3:65541595-65541614 | None:intergenic | 40.0% | |
| GTTTACGAAGAGACGTTGAA+AGG | - | chr3_3:65541595-65541614 | Msa0465200:intron | 40.0% | |
| CATACTTGGAGCATGAGAAA+AGG | - | chr3_3:65541874-65541893 | Msa0465200:CDS | 40.0% | |
| ! | ACTCTTCAAAAAGCATGCAG+AGG | - | chr3_3:65541905-65541924 | Msa0465200:CDS | 40.0% |
| !! | GAAAAAGAGCGTCTTGAGAA+AGG | - | chr3_3:65541957-65541976 | Msa0465200:CDS | 40.0% |
| AAAGAGGAGCTGTTACTGAT+AGG | - | chr3_3:65541986-65542005 | Msa0465200:CDS | 40.0% | |
| CTACTTCTCTACTGATAGGG+AGG | - | chr3_3:65540313-65540332 | Msa0465200:three_prime_UTR | 45.0% | |
| CTGGTTGTATTAACCTACCC+TGG | - | chr3_3:65540353-65540372 | Msa0465200:CDS | 45.0% | |
| CTAAGATCAGAACAGGAACC+AGG | + | chr3_3:65540374-65540393 | None:intergenic | 45.0% | |
| GCTCTTTCAAATGGCTAGGA+AGG | - | chr3_3:65540535-65540554 | Msa0465200:CDS | 45.0% | |
| ATGGCTAGGAAGGCCAAAAA+AGG | - | chr3_3:65540545-65540564 | Msa0465200:CDS | 45.0% | |
| CATGTCTGGTCATGGATTCT+TGG | - | chr3_3:65540586-65540605 | Msa0465200:CDS | 45.0% | |
| AACGGAATCAGCATCCTTGT+TGG | - | chr3_3:65540620-65540639 | Msa0465200:intron | 45.0% | |
| ! | CATCCTTGTTGGTTATGGTG+AGG | - | chr3_3:65540631-65540650 | Msa0465200:intron | 45.0% |
| ! | CTTGTTGGTTATGGTGAGGA+CGG | - | chr3_3:65540635-65540654 | Msa0465200:intron | 45.0% |
| ! | TTGTTGGTTATGGTGAGGAC+GGG | - | chr3_3:65540636-65540655 | Msa0465200:intron | 45.0% |
| ! | GGAGGACTATCCTCAGTTTT+AGG | + | chr3_3:65540931-65540950 | None:intergenic | 45.0% |
| ! | GCACAAGTTGACTTTGAAGG+AGG | + | chr3_3:65540949-65540968 | None:intergenic | 45.0% |
| TCAACTTGTGCTTCCCACAA+AGG | - | chr3_3:65540958-65540977 | Msa0465200:intron | 45.0% | |
| TCCTGTACGTGAATGACATG+CGG | + | chr3_3:65541007-65541026 | None:intergenic | 45.0% | |
| TGCAAGTTCTCACCGAGTTT+GGG | - | chr3_3:65541091-65541110 | Msa0465200:CDS | 45.0% | |
| GAAGCAGAATCAGATCGCTA+CGG | - | chr3_3:65541167-65541186 | Msa0465200:CDS | 45.0% | |
| TCAGATCGCTACGGAATTGA+AGG | - | chr3_3:65541176-65541195 | Msa0465200:CDS | 45.0% | |
| ATCGCTACGGAATTGAAGGT+GGG | - | chr3_3:65541180-65541199 | Msa0465200:CDS | 45.0% | |
| TACGGAATTGAAGGTGGGAA+TGG | - | chr3_3:65541185-65541204 | Msa0465200:CDS | 45.0% | |
| CAATCACAACACAAAAGGCC+AGG | + | chr3_3:65541228-65541247 | None:intergenic | 45.0% | |
| TTGAGTTTACCCATTTGCGG+CGG | + | chr3_3:65541315-65541334 | None:intergenic | 45.0% | |
| TCTTCATGAGAAGAAGCGGA+AGG | - | chr3_3:65541447-65541466 | Msa0465200:CDS | 45.0% | |
| ! | TTTGGCTTCTTCCCATGGAT+AGG | + | chr3_3:65541502-65541521 | None:intergenic | 45.0% |
| TATCCATGGGAAGAAGCCAA+AGG | - | chr3_3:65541501-65541520 | Msa0465200:CDS | 45.0% | |
| !! | GCAGAAAGTTGAAAGCACTG+AGG | - | chr3_3:65541525-65541544 | Msa0465200:intron | 45.0% |
| TCAACGTCTCTTCGTAAACC+GGG | + | chr3_3:65541594-65541613 | None:intergenic | 45.0% | |
| AGAGAAAAACTCGCCTCATC+AGG | + | chr3_3:65541783-65541802 | None:intergenic | 45.0% | |
| AGCATGCAGAGGAAAAGAAG+CGG | - | chr3_3:65541916-65541935 | Msa0465200:CDS | 45.0% | |
| TTGAGAAAGGGAAGGGAAAG+AGG | - | chr3_3:65541970-65541989 | Msa0465200:CDS | 45.0% | |
| ACCATGCTATGCTATGCTCT+TGG | - | chr3_3:65542014-65542033 | Msa0465200:CDS | 45.0% | |
| CTACTTCTCTACTGATAGGG+AGG | - | chr3_3:65540313-65540332 | Msa0465200:three_prime_UTR | 45.0% | |
| CTGGTTGTATTAACCTACCC+TGG | - | chr3_3:65540353-65540372 | Msa0465200:CDS | 45.0% | |
| CTAAGATCAGAACAGGAACC+AGG | + | chr3_3:65540374-65540393 | None:intergenic | 45.0% | |
| GCTCTTTCAAATGGCTAGGA+AGG | - | chr3_3:65540535-65540554 | Msa0465200:CDS | 45.0% | |
| ATGGCTAGGAAGGCCAAAAA+AGG | - | chr3_3:65540545-65540564 | Msa0465200:CDS | 45.0% | |
| CATGTCTGGTCATGGATTCT+TGG | - | chr3_3:65540586-65540605 | Msa0465200:CDS | 45.0% | |
| AACGGAATCAGCATCCTTGT+TGG | - | chr3_3:65540620-65540639 | Msa0465200:intron | 45.0% | |
| ! | CATCCTTGTTGGTTATGGTG+AGG | - | chr3_3:65540631-65540650 | Msa0465200:intron | 45.0% |
| ! | CTTGTTGGTTATGGTGAGGA+CGG | - | chr3_3:65540635-65540654 | Msa0465200:intron | 45.0% |
| ! | TTGTTGGTTATGGTGAGGAC+GGG | - | chr3_3:65540636-65540655 | Msa0465200:intron | 45.0% |
| ! | GGAGGACTATCCTCAGTTTT+AGG | + | chr3_3:65540931-65540950 | None:intergenic | 45.0% |
| ! | GCACAAGTTGACTTTGAAGG+AGG | + | chr3_3:65540949-65540968 | None:intergenic | 45.0% |
| TCAACTTGTGCTTCCCACAA+AGG | - | chr3_3:65540958-65540977 | Msa0465200:intron | 45.0% | |
| TCCTGTACGTGAATGACATG+CGG | + | chr3_3:65541007-65541026 | None:intergenic | 45.0% | |
| TGCAAGTTCTCACCGAGTTT+GGG | - | chr3_3:65541091-65541110 | Msa0465200:CDS | 45.0% | |
| GAAGCAGAATCAGATCGCTA+CGG | - | chr3_3:65541167-65541186 | Msa0465200:CDS | 45.0% | |
| TCAGATCGCTACGGAATTGA+AGG | - | chr3_3:65541176-65541195 | Msa0465200:CDS | 45.0% | |
| ATCGCTACGGAATTGAAGGT+GGG | - | chr3_3:65541180-65541199 | Msa0465200:CDS | 45.0% | |
| TACGGAATTGAAGGTGGGAA+TGG | - | chr3_3:65541185-65541204 | Msa0465200:CDS | 45.0% | |
| CAATCACAACACAAAAGGCC+AGG | + | chr3_3:65541228-65541247 | None:intergenic | 45.0% | |
| TTGAGTTTACCCATTTGCGG+CGG | + | chr3_3:65541315-65541334 | None:intergenic | 45.0% | |
| TCTTCATGAGAAGAAGCGGA+AGG | - | chr3_3:65541447-65541466 | Msa0465200:CDS | 45.0% | |
| ! | TTTGGCTTCTTCCCATGGAT+AGG | + | chr3_3:65541502-65541521 | None:intergenic | 45.0% |
| TATCCATGGGAAGAAGCCAA+AGG | - | chr3_3:65541501-65541520 | Msa0465200:CDS | 45.0% | |
| !! | GCAGAAAGTTGAAAGCACTG+AGG | - | chr3_3:65541525-65541544 | Msa0465200:intron | 45.0% |
| TCAACGTCTCTTCGTAAACC+GGG | + | chr3_3:65541594-65541613 | None:intergenic | 45.0% | |
| AGAGAAAAACTCGCCTCATC+AGG | + | chr3_3:65541783-65541802 | None:intergenic | 45.0% | |
| AGCATGCAGAGGAAAAGAAG+CGG | - | chr3_3:65541916-65541935 | Msa0465200:CDS | 45.0% | |
| TTGAGAAAGGGAAGGGAAAG+AGG | - | chr3_3:65541970-65541989 | Msa0465200:CDS | 45.0% | |
| ACCATGCTATGCTATGCTCT+TGG | - | chr3_3:65542014-65542033 | Msa0465200:CDS | 45.0% | |
| ATCAGAACAGGAACCAGGGT+AGG | + | chr3_3:65540369-65540388 | None:intergenic | 50.0% | |
| GCTAGGAAGGCCAAAAAAGG+AGG | - | chr3_3:65540548-65540567 | Msa0465200:CDS | 50.0% | |
| CGTCCTCACCATAACCAACA+AGG | + | chr3_3:65540637-65540656 | None:intergenic | 50.0% | |
| ! | TGTTGGTTATGGTGAGGACG+GGG | - | chr3_3:65540637-65540656 | Msa0465200:intron | 50.0% |
| ACCGCATGTCATTCACGTAC+AGG | - | chr3_3:65541003-65541022 | Msa0465200:intron | 50.0% | |
| GTGCAAGTTCTCACCGAGTT+TGG | - | chr3_3:65541090-65541109 | Msa0465200:CDS | 50.0% | |
| GATCGCTACGGAATTGAAGG+TGG | - | chr3_3:65541179-65541198 | Msa0465200:CDS | 50.0% | |
| TGTATCTGGACTCTCCCCAA+TGG | - | chr3_3:65541266-65541285 | Msa0465200:CDS | 50.0% | |
| ACAAAGGGGGATCCTATCCA+TGG | - | chr3_3:65541487-65541506 | Msa0465200:CDS | 50.0% | |
| CAAAGGGGGATCCTATCCAT+GGG | - | chr3_3:65541488-65541507 | Msa0465200:CDS | 50.0% | |
| AGCAGACAGAGAGAGAGAGA+GGG | + | chr3_3:65541634-65541653 | None:intergenic | 50.0% | |
| ! | CTCTGTCTGCTGCTTGCATT+TGG | - | chr3_3:65541643-65541662 | Msa0465200:intron | 50.0% |
| GTAGAACTGGACACCACTTG+AGG | + | chr3_3:65541761-65541780 | None:intergenic | 50.0% | |
| GTGTCCAGTTCTACCTGATG+AGG | - | chr3_3:65541767-65541786 | Msa0465200:CDS | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | - | chr3_3:65541919-65541938 | Msa0465200:CDS | 50.0% | |
| ! | AGAGCGTCTTGAGAAAGGGA+AGG | - | chr3_3:65541962-65541981 | Msa0465200:CDS | 50.0% |
| GAGCGTCTTGAGAAAGGGAA+GGG | - | chr3_3:65541963-65541982 | Msa0465200:CDS | 50.0% | |
| ! | GCCAAGAGCATAGCATAGCA+TGG | + | chr3_3:65542018-65542037 | None:intergenic | 50.0% |
| ATCAGAACAGGAACCAGGGT+AGG | + | chr3_3:65540369-65540388 | None:intergenic | 50.0% | |
| GCTAGGAAGGCCAAAAAAGG+AGG | - | chr3_3:65540548-65540567 | Msa0465200:CDS | 50.0% | |
| CGTCCTCACCATAACCAACA+AGG | + | chr3_3:65540637-65540656 | None:intergenic | 50.0% | |
| ! | TGTTGGTTATGGTGAGGACG+GGG | - | chr3_3:65540637-65540656 | Msa0465200:intron | 50.0% |
| ACCGCATGTCATTCACGTAC+AGG | - | chr3_3:65541003-65541022 | Msa0465200:intron | 50.0% | |
| GTGCAAGTTCTCACCGAGTT+TGG | - | chr3_3:65541090-65541109 | Msa0465200:CDS | 50.0% | |
| GATCGCTACGGAATTGAAGG+TGG | - | chr3_3:65541179-65541198 | Msa0465200:CDS | 50.0% | |
| TGTATCTGGACTCTCCCCAA+TGG | - | chr3_3:65541266-65541285 | Msa0465200:CDS | 50.0% | |
| ACAAAGGGGGATCCTATCCA+TGG | - | chr3_3:65541487-65541506 | Msa0465200:CDS | 50.0% | |
| CAAAGGGGGATCCTATCCAT+GGG | - | chr3_3:65541488-65541507 | Msa0465200:CDS | 50.0% | |
| AGCAGACAGAGAGAGAGAGA+GGG | + | chr3_3:65541634-65541653 | None:intergenic | 50.0% | |
| ! | CTCTGTCTGCTGCTTGCATT+TGG | - | chr3_3:65541643-65541662 | Msa0465200:intron | 50.0% |
| GTAGAACTGGACACCACTTG+AGG | + | chr3_3:65541761-65541780 | None:intergenic | 50.0% | |
| GTGTCCAGTTCTACCTGATG+AGG | - | chr3_3:65541767-65541786 | Msa0465200:CDS | 50.0% | |
| ATGCAGAGGAAAAGAAGCGG+TGG | - | chr3_3:65541919-65541938 | Msa0465200:CDS | 50.0% | |
| ! | AGAGCGTCTTGAGAAAGGGA+AGG | - | chr3_3:65541962-65541981 | Msa0465200:CDS | 50.0% |
| GAGCGTCTTGAGAAAGGGAA+GGG | - | chr3_3:65541963-65541982 | Msa0465200:CDS | 50.0% | |
| ! | GCCAAGAGCATAGCATAGCA+TGG | + | chr3_3:65542018-65542037 | None:intergenic | 50.0% |
| TTCCCACAAAGGTCACCCCT+TGG | - | chr3_3:65540969-65540988 | Msa0465200:intron | 55.0% | |
| TCCCACAAAGGTCACCCCTT+GGG | - | chr3_3:65540970-65540989 | Msa0465200:intron | 55.0% | |
| CGGTAAATACCGTCCCCAAG+GGG | + | chr3_3:65540987-65541006 | None:intergenic | 55.0% | |
| GCGGTAAATACCGTCCCCAA+GGG | + | chr3_3:65540988-65541007 | None:intergenic | 55.0% | |
| TGCGGTAAATACCGTCCCCA+AGG | + | chr3_3:65540989-65541008 | None:intergenic | 55.0% | |
| GAGAACTTGCACAAGTGCCC+AGG | + | chr3_3:65541082-65541101 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | + | chr3_3:65541507-65541526 | None:intergenic | 55.0% |
| GACAGAGAGAGAGAGAGGGA+GGG | + | chr3_3:65541630-65541649 | None:intergenic | 55.0% | |
| AGACAGAGAGAGAGAGAGGG+AGG | + | chr3_3:65541631-65541650 | None:intergenic | 55.0% | |
| CAGCAGACAGAGAGAGAGAG+AGG | + | chr3_3:65541635-65541654 | None:intergenic | 55.0% | |
| CTCGCCTCATCAGGTAGAAC+TGG | + | chr3_3:65541774-65541793 | None:intergenic | 55.0% | |
| TTCCCACAAAGGTCACCCCT+TGG | - | chr3_3:65540969-65540988 | Msa0465200:intron | 55.0% | |
| TCCCACAAAGGTCACCCCTT+GGG | - | chr3_3:65540970-65540989 | Msa0465200:intron | 55.0% | |
| CGGTAAATACCGTCCCCAAG+GGG | + | chr3_3:65540987-65541006 | None:intergenic | 55.0% | |
| GCGGTAAATACCGTCCCCAA+GGG | + | chr3_3:65540988-65541007 | None:intergenic | 55.0% | |
| TGCGGTAAATACCGTCCCCA+AGG | + | chr3_3:65540989-65541008 | None:intergenic | 55.0% | |
| GAGAACTTGCACAAGTGCCC+AGG | + | chr3_3:65541082-65541101 | None:intergenic | 55.0% | |
| ! | GCTCCTTTGGCTTCTTCCCA+TGG | + | chr3_3:65541507-65541526 | None:intergenic | 55.0% |
| GACAGAGAGAGAGAGAGGGA+GGG | + | chr3_3:65541630-65541649 | None:intergenic | 55.0% | |
| AGACAGAGAGAGAGAGAGGG+AGG | + | chr3_3:65541631-65541650 | None:intergenic | 55.0% | |
| CAGCAGACAGAGAGAGAGAG+AGG | + | chr3_3:65541635-65541654 | None:intergenic | 55.0% | |
| CTCGCCTCATCAGGTAGAAC+TGG | + | chr3_3:65541774-65541793 | None:intergenic | 55.0% | |
| CCCCAAGGGGTGACCTTTGT+GGG | + | chr3_3:65540974-65540993 | None:intergenic | 60.0% | |
| CCCACAAAGGTCACCCCTTG+GGG | - | chr3_3:65540971-65540990 | Msa0465200:intron | 60.0% | |
| TCCCCAAGGGGTGACCTTTG+TGG | + | chr3_3:65540975-65540994 | None:intergenic | 60.0% | |
| CAAAGGTCACCCCTTGGGGA+CGG | - | chr3_3:65540975-65540994 | Msa0465200:intron | 60.0% | |
| !! | CGGTTGGGAGGTGTCCATTG+GGG | + | chr3_3:65541283-65541302 | None:intergenic | 60.0% |
| !! | GCGGTTGGGAGGTGTCCATT+GGG | + | chr3_3:65541284-65541303 | None:intergenic | 60.0% |
| TTACCCATTTGCGGCGGCGA+CGG | + | chr3_3:65541309-65541328 | None:intergenic | 60.0% | |
| CCCCAAGGGGTGACCTTTGT+GGG | + | chr3_3:65540974-65540993 | None:intergenic | 60.0% | |
| CCCACAAAGGTCACCCCTTG+GGG | - | chr3_3:65540971-65540990 | Msa0465200:intron | 60.0% | |
| TCCCCAAGGGGTGACCTTTG+TGG | + | chr3_3:65540975-65540994 | None:intergenic | 60.0% | |
| CAAAGGTCACCCCTTGGGGA+CGG | - | chr3_3:65540975-65540994 | Msa0465200:intron | 60.0% | |
| !! | CGGTTGGGAGGTGTCCATTG+GGG | + | chr3_3:65541283-65541302 | None:intergenic | 60.0% |
| !! | GCGGTTGGGAGGTGTCCATT+GGG | + | chr3_3:65541284-65541303 | None:intergenic | 60.0% |
| TTACCCATTTGCGGCGGCGA+CGG | + | chr3_3:65541309-65541328 | None:intergenic | 60.0% | |
| GGGGCTCCCCGCTTCATACT+TGG | - | chr3_3:65540656-65540675 | Msa0465200:intron | 65.0% | |
| !! | GGCGGTTGGGAGGTGTCCAT+TGG | + | chr3_3:65541285-65541304 | None:intergenic | 65.0% |
| GGGGCTCCCCGCTTCATACT+TGG | - | chr3_3:65540656-65540675 | Msa0465200:intron | 65.0% | |
| !! | GGCGGTTGGGAGGTGTCCAT+TGG | + | chr3_3:65541285-65541304 | None:intergenic | 65.0% |
| ATTTGCGGCGGCGACGGCGG+CGG | + | chr3_3:65541303-65541322 | None:intergenic | 75.0% | |
| CCCATTTGCGGCGGCGACGG+CGG | + | chr3_3:65541306-65541325 | None:intergenic | 75.0% | |
| CCGCCGTCGCCGCCGCAAAT+GGG | - | chr3_3:65541303-65541322 | Msa0465200:CDS | 75.0% | |
| ATTTGCGGCGGCGACGGCGG+CGG | + | chr3_3:65541303-65541322 | None:intergenic | 75.0% | |
| CCCATTTGCGGCGGCGACGG+CGG | + | chr3_3:65541306-65541325 | None:intergenic | 75.0% | |
| CCGCCGTCGCCGCCGCAAAT+GGG | - | chr3_3:65541303-65541322 | Msa0465200:CDS | 75.0% | |
| ! | GCCGCCGTCGCCGCCGCAAA+TGG | - | chr3_3:65541302-65541321 | Msa0465200:CDS | 80.0% |
| ! | GCCGCCGTCGCCGCCGCAAA+TGG | - | chr3_3:65541302-65541321 | Msa0465200:CDS | 80.0% |
| ! | CGGCGACGGCGGCGGTTGGG+AGG | + | chr3_3:65541295-65541314 | None:intergenic | 85.0% |
| ! | CGGCGGCGACGGCGGCGGTT+GGG | + | chr3_3:65541298-65541317 | None:intergenic | 85.0% |
| ! | CGGCGACGGCGGCGGTTGGG+AGG | + | chr3_3:65541295-65541314 | None:intergenic | 85.0% |
| ! | CGGCGGCGACGGCGGCGGTT+GGG | + | chr3_3:65541298-65541317 | None:intergenic | 85.0% |
| ! | GCGGCGGCGACGGCGGCGGT+TGG | + | chr3_3:65541299-65541318 | None:intergenic | 90.0% |
| ! | GCGGCGGCGACGGCGGCGGT+TGG | + | chr3_3:65541299-65541318 | None:intergenic | 90.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 65540299 | 65542040 | 65540299 | ID=Msa0465200;Name=Msa0465200 |
| chr3_3 | mRNA | 65540299 | 65542040 | 65540299 | ID=Msa0465200-mRNA-1;Parent=Msa0465200;Name=Msa0465200-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.75|0.6|1|1|1|5|36|427 |
| chr3_3 | exon | 65540299 | 65540469 | 65540299 | ID=Msa0465200-mRNA-1:exon:14587;Parent=Msa0465200-mRNA-1 |
| chr3_3 | exon | 65540533 | 65540615 | 65540533 | ID=Msa0465200-mRNA-1:exon:14586;Parent=Msa0465200-mRNA-1 |
| chr3_3 | exon | 65540723 | 65540902 | 65540723 | ID=Msa0465200-mRNA-1:exon:14585;Parent=Msa0465200-mRNA-1 |
| chr3_3 | exon | 65541015 | 65541521 | 65541015 | ID=Msa0465200-mRNA-1:exon:14584;Parent=Msa0465200-mRNA-1 |
| chr3_3 | exon | 65541662 | 65542040 | 65541662 | ID=Msa0465200-mRNA-1:exon:14583;Parent=Msa0465200-mRNA-1 |
| chr3_3 | CDS | 65541662 | 65542040 | 65541662 | ID=Msa0465200-mRNA-1:cds;Parent=Msa0465200-mRNA-1 |
| chr3_3 | CDS | 65541015 | 65541521 | 65541015 | ID=Msa0465200-mRNA-1:cds;Parent=Msa0465200-mRNA-1 |
| chr3_3 | CDS | 65540723 | 65540902 | 65540723 | ID=Msa0465200-mRNA-1:cds;Parent=Msa0465200-mRNA-1 |
| chr3_3 | CDS | 65540533 | 65540615 | 65540533 | ID=Msa0465200-mRNA-1:cds;Parent=Msa0465200-mRNA-1 |
| chr3_3 | CDS | 65540335 | 65540469 | 65540335 | ID=Msa0465200-mRNA-1:cds;Parent=Msa0465200-mRNA-1 |
| chr3_3 | three_prime_UTR | 65540299 | 65540334 | 65540299 | ID=Msa0465200-mRNA-1:three_prime_utr;Parent=Msa0465200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
