Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396820 | XP_003598677.2 | 95.812 | 191 | 8 | 0 | 1 | 191 | 1 | 191 | 6.45e-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396820 | sp|Q9LK88|NQR_ARATH | 72.193 | 187 | 52 | 0 | 4 | 190 | 10 | 196 | 8.77e-95 | 276 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396820 | G7IW39 | 95.812 | 191 | 8 | 0 | 1 | 191 | 1 | 191 | 3.08e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0150620 | Msa0396820 | 0.801585 | 8.402226e-49 | -8.615850e-47 |
| Msa0396820 | Msa0396880 | 0.800891 | 1.165040e-48 | -8.615850e-47 |
| Msa0396820 | Msa0444370 | 0.953297 | 3.735346e-111 | -8.615850e-47 |
| Msa0396820 | Msa0491980 | 0.886269 | 3.960292e-72 | -8.615850e-47 |
| Msa0396820 | Msa0613300 | 0.802079 | 6.650358e-49 | -8.615850e-47 |
| Msa0396820 | Msa1069250 | 0.806395 | 8.400226e-50 | -8.615850e-47 |
| Msa0396820 | Msa1120580 | 0.804142 | 2.490072e-49 | -8.615850e-47 |
| Msa0396820 | Msa1157110 | 0.804913 | 1.719644e-49 | -8.615850e-47 |
| Msa0396820 | Msa1328430 | 0.801658 | 8.116323e-49 | -8.615850e-47 |
| Msa0348460 | Msa0396820 | 0.954473 | 2.733469e-112 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396820 | MtrunA17_Chr3g0084221 | 95.812 | 191 | 8 | 0 | 1 | 191 | 1 | 191 | 5.94e-133 | 370 |
| Msa0396820 | MtrunA17_Chr3g0084201 | 84.293 | 191 | 29 | 1 | 1 | 191 | 1 | 190 | 3.63e-115 | 325 |
| Msa0396820 | MtrunA17_Chr3g0084161 | 76.963 | 191 | 44 | 0 | 1 | 191 | 1 | 191 | 2.89e-107 | 305 |
| Msa0396820 | MtrunA17_Chr8g0353131 | 74.737 | 190 | 48 | 0 | 2 | 191 | 3 | 192 | 1.31e-105 | 301 |
| Msa0396820 | MtrunA17_Chr3g0084191 | 67.526 | 194 | 56 | 2 | 1 | 189 | 1 | 192 | 5.77e-87 | 264 |
| Msa0396820 | MtrunA17_Chr3g0082411 | 60.317 | 63 | 20 | 1 | 50 | 107 | 1 | 63 | 6.27e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0396820 | AT3G27890.1 | 72.193 | 187 | 52 | 0 | 4 | 190 | 10 | 196 | 8.91e-96 | 276 |
Find 42 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTTCAAGCTATTTC+TGG | 0.136711 | 3_2:-15673469 | None:intergenic |
| AACTCCCTCCAAATTATTCT+TGG | 0.259605 | 3_2:-15673385 | None:intergenic |
| TAACATGGCTGGAGTAATTA+AGG | 0.315701 | 3_2:+15671914 | Msa0396820:exon |
| TGAAGGTGCCAAGAATAATT+TGG | 0.316301 | 3_2:+15673377 | Msa0396820:CDS |
| CATCAAGACCACCAAATGTT+TGG | 0.317863 | 3_2:+15673178 | Msa0396820:CDS |
| ATTTGTTCTTTATTTACATT+TGG | 0.343120 | 3_2:+15673555 | Msa0396820:three_prime_UTR |
| GGCTTTCTAGCCCAAACATT+TGG | 0.344063 | 3_2:-15673189 | None:intergenic |
| CACTACCATCTCCGACAAAT+TGG | 0.356266 | 3_2:+15673258 | Msa0396820:CDS |
| CAATCAATTGCATTCTTTAG+TGG | 0.360817 | 3_2:-15673153 | None:intergenic |
| ATTAAGGTTGTTGCTATCTC+TGG | 0.365275 | 3_2:+15671930 | Msa0396820:CDS |
| CAGCCTCCAGCAAAATTTAA+CGG | 0.370197 | 3_2:+15673336 | Msa0396820:CDS |
| CACTAAAGAATGCAATTGAT+TGG | 0.393700 | 3_2:+15673154 | Msa0396820:CDS |
| GTTCCAGAAATAGCTTGAAA+TGG | 0.396395 | 3_2:+15673466 | Msa0396820:three_prime_UTR |
| CGAAAAGCTTCAACTTCAGC+TGG | 0.413282 | 3_2:-15672340 | None:intergenic |
| GCATTTACCCTTCAACTTCA+AGG | 0.415648 | 3_2:+15673423 | Msa0396820:CDS |
| GAGACAGAATAATTATATTC+AGG | 0.417383 | 3_2:-15672403 | None:intergenic |
| ATCAAGACCACCAAATGTTT+GGG | 0.428497 | 3_2:+15673179 | Msa0396820:CDS |
| GAATATAATTATTCTGTCTC+AGG | 0.442769 | 3_2:+15672406 | Msa0396820:CDS |
| TTGAAGGGTAAATGCCTTCA+AGG | 0.460642 | 3_2:-15673415 | None:intergenic |
| AACACTGATCTTGAGATAGA+AGG | 0.466931 | 3_2:+15672310 | Msa0396820:CDS |
| AACACCGGTCTCATCCGTTC+TGG | 0.467180 | 3_2:+15671975 | Msa0396820:CDS |
| ACTAAAGAATGCAATTGATT+GGG | 0.467662 | 3_2:+15673155 | Msa0396820:CDS |
| TTTCTAGCCCAAACATTTGG+TGG | 0.496551 | 3_2:-15673186 | None:intergenic |
| TGATTAACAAATAACATGGC+TGG | 0.529188 | 3_2:+15671903 | Msa0396820:exon |
| CCAGCAAAATTTAACGGTGA+TGG | 0.537260 | 3_2:+15673342 | Msa0396820:CDS |
| CGACGAAAACTCCAATTTGT+CGG | 0.538450 | 3_2:-15673269 | None:intergenic |
| GCTGCAATAGTGAGTGTTGG+AGG | 0.549316 | 3_2:+15673213 | Msa0396820:CDS |
| AAACTCCAATTTGTCGGAGA+TGG | 0.555469 | 3_2:-15673263 | None:intergenic |
| AGAACGGATGAGACCGGTGT+TGG | 0.572988 | 3_2:-15671973 | None:intergenic |
| CCAACACTCACTATTGCAGC+AGG | 0.576426 | 3_2:-15673210 | None:intergenic |
| CGAAAAGCTTCTTCCAACAC+CGG | 0.586905 | 3_2:+15671960 | Msa0396820:CDS |
| GTGAGTGTTGGAGGAGGACA+CGG | 0.590742 | 3_2:+15673222 | Msa0396820:CDS |
| CCAACCAGAACGGATGAGAC+CGG | 0.599652 | 3_2:-15671979 | None:intergenic |
| TCAAGATCAGTGTTCAACAT+TGG | 0.603076 | 3_2:-15672301 | None:intergenic |
| AGGTGCCAAGAATAATTTGG+AGG | 0.610159 | 3_2:+15673380 | Msa0396820:CDS |
| CCTGCTGCAATAGTGAGTGT+TGG | 0.618578 | 3_2:+15673210 | Msa0396820:CDS |
| ACATTGATTAACAAATAACA+TGG | 0.644516 | 3_2:+15671899 | Msa0396820:exon |
| GAAGTAGGAACCAACCAGAA+CGG | 0.644564 | 3_2:-15671989 | None:intergenic |
| GATGGCGATTTGATCGATGA+AGG | 0.647374 | 3_2:+15673360 | Msa0396820:CDS |
| GGTGCCAAGAATAATTTGGA+GGG | 0.648641 | 3_2:+15673381 | Msa0396820:CDS |
| GCAATAGTGAGTGTTGGAGG+AGG | 0.656596 | 3_2:+15673216 | Msa0396820:CDS |
| AGTGTTGGAGGAGGACACGG+TGG | 0.780760 | 3_2:+15673225 | Msa0396820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATATATTTATTTCATTT+TGG | - | chr3_2:15672563-15672582 | None:intergenic | 10.0% |
| !! | TTAATATGTTGAAATTTAAA+TGG | + | chr3_2:15672781-15672800 | Msa0396820:intron | 10.0% |
| !! | TAATATGTTGAAATTTAAAT+GGG | + | chr3_2:15672782-15672801 | Msa0396820:intron | 10.0% |
| !! | TTAATTGGTAAAATTTAAAT+AGG | - | chr3_2:15672848-15672867 | None:intergenic | 10.0% |
| !!! | CTTATATATTTATTTCATTT+TGG | - | chr3_2:15672563-15672582 | None:intergenic | 10.0% |
| !! | TTAATATGTTGAAATTTAAA+TGG | + | chr3_2:15672781-15672800 | Msa0396820:intron | 10.0% |
| !! | TAATATGTTGAAATTTAAAT+GGG | + | chr3_2:15672782-15672801 | Msa0396820:intron | 10.0% |
| !! | TTAATTGGTAAAATTTAAAT+AGG | - | chr3_2:15672848-15672867 | None:intergenic | 10.0% |
| !!! | CAACATGTTTATATTTTTTT+TGG | + | chr3_2:15672739-15672758 | Msa0396820:intron | 15.0% |
| !!! | TAAATTTTACCAATTAAAGA+TGG | + | chr3_2:15672851-15672870 | Msa0396820:intron | 15.0% |
| !! | TGATTAAAAAAATCAATACT+TGG | - | chr3_2:15672998-15673017 | None:intergenic | 15.0% |
| !!! | ATTTGTTCTTTATTTACATT+TGG | + | chr3_2:15673555-15673574 | Msa0396820:three_prime_UTR | 15.0% |
| !!! | CAACATGTTTATATTTTTTT+TGG | + | chr3_2:15672739-15672758 | Msa0396820:intron | 15.0% |
| !!! | TAAATTTTACCAATTAAAGA+TGG | + | chr3_2:15672851-15672870 | Msa0396820:intron | 15.0% |
| !! | TGATTAAAAAAATCAATACT+TGG | - | chr3_2:15672998-15673017 | None:intergenic | 15.0% |
| !!! | ATTTGTTCTTTATTTACATT+TGG | + | chr3_2:15673555-15673574 | Msa0396820:three_prime_UTR | 15.0% |
| !!! | ACATTGATTAACAAATAACA+TGG | + | chr3_2:15671899-15671918 | Msa0396820:exon | 20.0% |
| !!! | CATCGTTAGTTTTATTTTTT+TGG | + | chr3_2:15672053-15672072 | Msa0396820:intron | 20.0% |
| !!! | ATTTTTATTATAATCGACGA+GGG | + | chr3_2:15672210-15672229 | Msa0396820:intron | 20.0% |
| !! | ATAATTTAGACTAAATGCAT+TGG | - | chr3_2:15672605-15672624 | None:intergenic | 20.0% |
| !! | TGTTTGTGTTTAATTAAAGA+TGG | + | chr3_2:15672876-15672895 | Msa0396820:intron | 20.0% |
| !! | TAACAACAAATTCTCTAATT+CGG | - | chr3_2:15672915-15672934 | None:intergenic | 20.0% |
| !! | TTATAAAGTGAATTAGAGAA+TGG | + | chr3_2:15673054-15673073 | Msa0396820:intron | 20.0% |
| !!! | ACATTGATTAACAAATAACA+TGG | + | chr3_2:15671899-15671918 | Msa0396820:exon | 20.0% |
| !!! | CATCGTTAGTTTTATTTTTT+TGG | + | chr3_2:15672053-15672072 | Msa0396820:intron | 20.0% |
| !!! | ATTTTTATTATAATCGACGA+GGG | + | chr3_2:15672210-15672229 | Msa0396820:intron | 20.0% |
| !! | ATAATTTAGACTAAATGCAT+TGG | - | chr3_2:15672605-15672624 | None:intergenic | 20.0% |
| !! | TGTTTGTGTTTAATTAAAGA+TGG | + | chr3_2:15672876-15672895 | Msa0396820:intron | 20.0% |
| !! | TAACAACAAATTCTCTAATT+CGG | - | chr3_2:15672915-15672934 | None:intergenic | 20.0% |
| !! | TTATAAAGTGAATTAGAGAA+TGG | + | chr3_2:15673054-15673073 | Msa0396820:intron | 20.0% |
| !! | GATTTTTATTATAATCGACG+AGG | + | chr3_2:15672209-15672228 | Msa0396820:intron | 25.0% |
| ! | GAGACAGAATAATTATATTC+AGG | - | chr3_2:15672406-15672425 | None:intergenic | 25.0% |
| ! | GAATATAATTATTCTGTCTC+AGG | + | chr3_2:15672406-15672425 | Msa0396820:CDS | 25.0% |
| !! | AACAACACTTTTATTGTCAA+AGG | - | chr3_2:15672479-15672498 | None:intergenic | 25.0% |
| ! | ACTAAAGAATGCAATTGATT+GGG | + | chr3_2:15673155-15673174 | Msa0396820:CDS | 25.0% |
| !! | CTTCAATCGTGATTTTTATT+CGG | + | chr3_2:15673520-15673539 | Msa0396820:three_prime_UTR | 25.0% |
| !! | GATTTTTATTATAATCGACG+AGG | + | chr3_2:15672209-15672228 | Msa0396820:intron | 25.0% |
| ! | GAGACAGAATAATTATATTC+AGG | - | chr3_2:15672406-15672425 | None:intergenic | 25.0% |
| ! | GAATATAATTATTCTGTCTC+AGG | + | chr3_2:15672406-15672425 | Msa0396820:CDS | 25.0% |
| !! | AACAACACTTTTATTGTCAA+AGG | - | chr3_2:15672479-15672498 | None:intergenic | 25.0% |
| ! | ACTAAAGAATGCAATTGATT+GGG | + | chr3_2:15673155-15673174 | Msa0396820:CDS | 25.0% |
| !! | CTTCAATCGTGATTTTTATT+CGG | + | chr3_2:15673520-15673539 | Msa0396820:three_prime_UTR | 25.0% |
| TGATTAACAAATAACATGGC+TGG | + | chr3_2:15671903-15671922 | Msa0396820:exon | 30.0% | |
| AAGAAAACATCATGTTCATG+TGG | + | chr3_2:15672430-15672449 | Msa0396820:intron | 30.0% | |
| TGGGTCATACTAAATTTATG+AGG | + | chr3_2:15672801-15672820 | Msa0396820:intron | 30.0% | |
| ACAAACACACCATCTTTAAT+TGG | - | chr3_2:15672863-15672882 | None:intergenic | 30.0% | |
| ! | GTGAATTAGAGAATGGTTTT+TGG | + | chr3_2:15673061-15673080 | Msa0396820:intron | 30.0% |
| !!! | GGTTTTTGGAATATTTGAGA+CGG | + | chr3_2:15673075-15673094 | Msa0396820:intron | 30.0% |
| CAATCAATTGCATTCTTTAG+TGG | - | chr3_2:15673156-15673175 | None:intergenic | 30.0% | |
| CACTAAAGAATGCAATTGAT+TGG | + | chr3_2:15673154-15673173 | Msa0396820:CDS | 30.0% | |
| AAACGCGTTTAAGAAAAACT+CGG | - | chr3_2:15673316-15673335 | None:intergenic | 30.0% | |
| ! | ATTTTTGCCTTGAAGTTGAA+GGG | - | chr3_2:15673433-15673452 | None:intergenic | 30.0% |
| ! | AATTTTTGCCTTGAAGTTGA+AGG | - | chr3_2:15673434-15673453 | None:intergenic | 30.0% |
| ! | ATTCCATTTCAAGCTATTTC+TGG | - | chr3_2:15673472-15673491 | None:intergenic | 30.0% |
| TGATTAACAAATAACATGGC+TGG | + | chr3_2:15671903-15671922 | Msa0396820:exon | 30.0% | |
| AAGAAAACATCATGTTCATG+TGG | + | chr3_2:15672430-15672449 | Msa0396820:intron | 30.0% | |
| TGGGTCATACTAAATTTATG+AGG | + | chr3_2:15672801-15672820 | Msa0396820:intron | 30.0% | |
| ACAAACACACCATCTTTAAT+TGG | - | chr3_2:15672863-15672882 | None:intergenic | 30.0% | |
| ! | GTGAATTAGAGAATGGTTTT+TGG | + | chr3_2:15673061-15673080 | Msa0396820:intron | 30.0% |
| !!! | GGTTTTTGGAATATTTGAGA+CGG | + | chr3_2:15673075-15673094 | Msa0396820:intron | 30.0% |
| CAATCAATTGCATTCTTTAG+TGG | - | chr3_2:15673156-15673175 | None:intergenic | 30.0% | |
| CACTAAAGAATGCAATTGAT+TGG | + | chr3_2:15673154-15673173 | Msa0396820:CDS | 30.0% | |
| AAACGCGTTTAAGAAAAACT+CGG | - | chr3_2:15673316-15673335 | None:intergenic | 30.0% | |
| ! | ATTTTTGCCTTGAAGTTGAA+GGG | - | chr3_2:15673433-15673452 | None:intergenic | 30.0% |
| ! | AATTTTTGCCTTGAAGTTGA+AGG | - | chr3_2:15673434-15673453 | None:intergenic | 30.0% |
| ! | ATTCCATTTCAAGCTATTTC+TGG | - | chr3_2:15673472-15673491 | None:intergenic | 30.0% |
| TAACATGGCTGGAGTAATTA+AGG | + | chr3_2:15671914-15671933 | Msa0396820:exon | 35.0% | |
| ATTAAGGTTGTTGCTATCTC+TGG | + | chr3_2:15671930-15671949 | Msa0396820:CDS | 35.0% | |
| !! | GTTTACGTGCATTGATTAAC+TGG | + | chr3_2:15672174-15672193 | Msa0396820:intron | 35.0% |
| CTGAGCAAAAATGTAGTTGA+GGG | + | chr3_2:15672244-15672263 | Msa0396820:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15672304-15672323 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGATAGA+AGG | + | chr3_2:15672310-15672329 | Msa0396820:CDS | 35.0% | |
| AAAACATCATGTTCATGTGG+CGG | + | chr3_2:15672433-15672452 | Msa0396820:intron | 35.0% | |
| !! | GTGTTGTTTGATATGTGTCT+AGG | + | chr3_2:15672491-15672510 | Msa0396820:intron | 35.0% |
| ATCAAGACCACCAAATGTTT+GGG | + | chr3_2:15673179-15673198 | Msa0396820:CDS | 35.0% | |
| AACGCGTTTAAGAAAAACTC+GGG | - | chr3_2:15673315-15673334 | None:intergenic | 35.0% | |
| !! | TGAAGGTGCCAAGAATAATT+TGG | + | chr3_2:15673377-15673396 | Msa0396820:CDS | 35.0% |
| AACTCCCTCCAAATTATTCT+TGG | - | chr3_2:15673388-15673407 | None:intergenic | 35.0% | |
| GTTCCAGAAATAGCTTGAAA+TGG | + | chr3_2:15673466-15673485 | Msa0396820:three_prime_UTR | 35.0% | |
| TAACATGGCTGGAGTAATTA+AGG | + | chr3_2:15671914-15671933 | Msa0396820:exon | 35.0% | |
| ATTAAGGTTGTTGCTATCTC+TGG | + | chr3_2:15671930-15671949 | Msa0396820:CDS | 35.0% | |
| !! | GTTTACGTGCATTGATTAAC+TGG | + | chr3_2:15672174-15672193 | Msa0396820:intron | 35.0% |
| CTGAGCAAAAATGTAGTTGA+GGG | + | chr3_2:15672244-15672263 | Msa0396820:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_2:15672304-15672323 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGATAGA+AGG | + | chr3_2:15672310-15672329 | Msa0396820:CDS | 35.0% | |
| AAAACATCATGTTCATGTGG+CGG | + | chr3_2:15672433-15672452 | Msa0396820:intron | 35.0% | |
| !! | GTGTTGTTTGATATGTGTCT+AGG | + | chr3_2:15672491-15672510 | Msa0396820:intron | 35.0% |
| ATCAAGACCACCAAATGTTT+GGG | + | chr3_2:15673179-15673198 | Msa0396820:CDS | 35.0% | |
| AACGCGTTTAAGAAAAACTC+GGG | - | chr3_2:15673315-15673334 | None:intergenic | 35.0% | |
| !! | TGAAGGTGCCAAGAATAATT+TGG | + | chr3_2:15673377-15673396 | Msa0396820:CDS | 35.0% |
| AACTCCCTCCAAATTATTCT+TGG | - | chr3_2:15673388-15673407 | None:intergenic | 35.0% | |
| GTTCCAGAAATAGCTTGAAA+TGG | + | chr3_2:15673466-15673485 | Msa0396820:three_prime_UTR | 35.0% | |
| CCAGAATGGATGTAAGAAGT+AGG | - | chr3_2:15672007-15672026 | None:intergenic | 40.0% | |
| CCTACTTCTTACATCCATTC+TGG | + | chr3_2:15672004-15672023 | Msa0396820:intron | 40.0% | |
| ACTGTCTCATTCAACCAGAA+TGG | - | chr3_2:15672021-15672040 | None:intergenic | 40.0% | |
| GCTGAGCAAAAATGTAGTTG+AGG | + | chr3_2:15672243-15672262 | Msa0396820:CDS | 40.0% | |
| CATCAAGACCACCAAATGTT+TGG | + | chr3_2:15673178-15673197 | Msa0396820:CDS | 40.0% | |
| ! | TTTCTAGCCCAAACATTTGG+TGG | - | chr3_2:15673189-15673208 | None:intergenic | 40.0% |
| AAACTCCAATTTGTCGGAGA+TGG | - | chr3_2:15673266-15673285 | None:intergenic | 40.0% | |
| CGACGAAAACTCCAATTTGT+CGG | - | chr3_2:15673272-15673291 | None:intergenic | 40.0% | |
| CAGCCTCCAGCAAAATTTAA+CGG | + | chr3_2:15673336-15673355 | Msa0396820:CDS | 40.0% | |
| ! | TCACCGTTAAATTTTGCTGG+AGG | - | chr3_2:15673342-15673361 | None:intergenic | 40.0% |
| ! | CCATCACCGTTAAATTTTGC+TGG | - | chr3_2:15673345-15673364 | None:intergenic | 40.0% |
| CCAGCAAAATTTAACGGTGA+TGG | + | chr3_2:15673342-15673361 | Msa0396820:CDS | 40.0% | |
| AGGTGCCAAGAATAATTTGG+AGG | + | chr3_2:15673380-15673399 | Msa0396820:CDS | 40.0% | |
| GGTGCCAAGAATAATTTGGA+GGG | + | chr3_2:15673381-15673400 | Msa0396820:CDS | 40.0% | |
| TTGAAGGGTAAATGCCTTCA+AGG | - | chr3_2:15673418-15673437 | None:intergenic | 40.0% | |
| GCATTTACCCTTCAACTTCA+AGG | + | chr3_2:15673423-15673442 | Msa0396820:CDS | 40.0% | |
| CCAGAATGGATGTAAGAAGT+AGG | - | chr3_2:15672007-15672026 | None:intergenic | 40.0% | |
| CCTACTTCTTACATCCATTC+TGG | + | chr3_2:15672004-15672023 | Msa0396820:intron | 40.0% | |
| ACTGTCTCATTCAACCAGAA+TGG | - | chr3_2:15672021-15672040 | None:intergenic | 40.0% | |
| GCTGAGCAAAAATGTAGTTG+AGG | + | chr3_2:15672243-15672262 | Msa0396820:CDS | 40.0% | |
| CATCAAGACCACCAAATGTT+TGG | + | chr3_2:15673178-15673197 | Msa0396820:CDS | 40.0% | |
| ! | TTTCTAGCCCAAACATTTGG+TGG | - | chr3_2:15673189-15673208 | None:intergenic | 40.0% |
| AAACTCCAATTTGTCGGAGA+TGG | - | chr3_2:15673266-15673285 | None:intergenic | 40.0% | |
| CGACGAAAACTCCAATTTGT+CGG | - | chr3_2:15673272-15673291 | None:intergenic | 40.0% | |
| CAGCCTCCAGCAAAATTTAA+CGG | + | chr3_2:15673336-15673355 | Msa0396820:CDS | 40.0% | |
| ! | TCACCGTTAAATTTTGCTGG+AGG | - | chr3_2:15673342-15673361 | None:intergenic | 40.0% |
| ! | CCATCACCGTTAAATTTTGC+TGG | - | chr3_2:15673345-15673364 | None:intergenic | 40.0% |
| CCAGCAAAATTTAACGGTGA+TGG | + | chr3_2:15673342-15673361 | Msa0396820:CDS | 40.0% | |
| AGGTGCCAAGAATAATTTGG+AGG | + | chr3_2:15673380-15673399 | Msa0396820:CDS | 40.0% | |
| GGTGCCAAGAATAATTTGGA+GGG | + | chr3_2:15673381-15673400 | Msa0396820:CDS | 40.0% | |
| TTGAAGGGTAAATGCCTTCA+AGG | - | chr3_2:15673418-15673437 | None:intergenic | 40.0% | |
| GCATTTACCCTTCAACTTCA+AGG | + | chr3_2:15673423-15673442 | Msa0396820:CDS | 40.0% | |
| CGAAAAGCTTCTTCCAACAC+CGG | + | chr3_2:15671960-15671979 | Msa0396820:CDS | 45.0% | |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_2:15671992-15672011 | None:intergenic | 45.0% | |
| TGACGCACTGTTCTCATTCA+AGG | + | chr3_2:15672098-15672117 | Msa0396820:intron | 45.0% | |
| CGAAAAGCTTCAACTTCAGC+TGG | - | chr3_2:15672343-15672362 | None:intergenic | 45.0% | |
| ! | GGCTTTCTAGCCCAAACATT+TGG | - | chr3_2:15673192-15673211 | None:intergenic | 45.0% |
| CACTACCATCTCCGACAAAT+TGG | + | chr3_2:15673258-15673277 | Msa0396820:CDS | 45.0% | |
| GATGGCGATTTGATCGATGA+AGG | + | chr3_2:15673360-15673379 | Msa0396820:CDS | 45.0% | |
| ! | GGGAGTTCTTTTGTCCTTGA+AGG | + | chr3_2:15673401-15673420 | Msa0396820:CDS | 45.0% |
| CGAAAAGCTTCTTCCAACAC+CGG | + | chr3_2:15671960-15671979 | Msa0396820:CDS | 45.0% | |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_2:15671992-15672011 | None:intergenic | 45.0% | |
| TGACGCACTGTTCTCATTCA+AGG | + | chr3_2:15672098-15672117 | Msa0396820:intron | 45.0% | |
| CGAAAAGCTTCAACTTCAGC+TGG | - | chr3_2:15672343-15672362 | None:intergenic | 45.0% | |
| ! | GGCTTTCTAGCCCAAACATT+TGG | - | chr3_2:15673192-15673211 | None:intergenic | 45.0% |
| CACTACCATCTCCGACAAAT+TGG | + | chr3_2:15673258-15673277 | Msa0396820:CDS | 45.0% | |
| GATGGCGATTTGATCGATGA+AGG | + | chr3_2:15673360-15673379 | Msa0396820:CDS | 45.0% | |
| ! | GGGAGTTCTTTTGTCCTTGA+AGG | + | chr3_2:15673401-15673420 | Msa0396820:CDS | 45.0% |
| !! | ATTATAATAAAAATCAAATT+AGG | - | chr3_2:15672204-15672223 | None:intergenic | 5.0% |
| !! | ATTATAATAAAAATCAAATT+AGG | - | chr3_2:15672204-15672223 | None:intergenic | 5.0% |
| CCAACACTCACTATTGCAGC+AGG | - | chr3_2:15673213-15673232 | None:intergenic | 50.0% | |
| CCTGCTGCAATAGTGAGTGT+TGG | + | chr3_2:15673210-15673229 | Msa0396820:CDS | 50.0% | |
| !! | GCTGCAATAGTGAGTGTTGG+AGG | + | chr3_2:15673213-15673232 | Msa0396820:CDS | 50.0% |
| !! | GCAATAGTGAGTGTTGGAGG+AGG | + | chr3_2:15673216-15673235 | Msa0396820:CDS | 50.0% |
| CCAACACTCACTATTGCAGC+AGG | - | chr3_2:15673213-15673232 | None:intergenic | 50.0% | |
| CCTGCTGCAATAGTGAGTGT+TGG | + | chr3_2:15673210-15673229 | Msa0396820:CDS | 50.0% | |
| !! | GCTGCAATAGTGAGTGTTGG+AGG | + | chr3_2:15673213-15673232 | Msa0396820:CDS | 50.0% |
| !! | GCAATAGTGAGTGTTGGAGG+AGG | + | chr3_2:15673216-15673235 | Msa0396820:CDS | 50.0% |
| AGAACGGATGAGACCGGTGT+TGG | - | chr3_2:15671976-15671995 | None:intergenic | 55.0% | |
| AACACCGGTCTCATCCGTTC+TGG | + | chr3_2:15671975-15671994 | Msa0396820:CDS | 55.0% | |
| CCAACCAGAACGGATGAGAC+CGG | - | chr3_2:15671982-15672001 | None:intergenic | 55.0% | |
| !! | GTGAGTGTTGGAGGAGGACA+CGG | + | chr3_2:15673222-15673241 | Msa0396820:CDS | 55.0% |
| AGAACGGATGAGACCGGTGT+TGG | - | chr3_2:15671976-15671995 | None:intergenic | 55.0% | |
| AACACCGGTCTCATCCGTTC+TGG | + | chr3_2:15671975-15671994 | Msa0396820:CDS | 55.0% | |
| CCAACCAGAACGGATGAGAC+CGG | - | chr3_2:15671982-15672001 | None:intergenic | 55.0% | |
| !! | GTGAGTGTTGGAGGAGGACA+CGG | + | chr3_2:15673222-15673241 | Msa0396820:CDS | 55.0% |
| CCGGTCTCATCCGTTCTGGT+TGG | + | chr3_2:15671979-15671998 | Msa0396820:intron | 60.0% | |
| ! | AGTGTTGGAGGAGGACACGG+TGG | + | chr3_2:15673225-15673244 | Msa0396820:CDS | 60.0% |
| CCGGTCTCATCCGTTCTGGT+TGG | + | chr3_2:15671979-15671998 | Msa0396820:intron | 60.0% | |
| ! | AGTGTTGGAGGAGGACACGG+TGG | + | chr3_2:15673225-15673244 | Msa0396820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 15671876 | 15673597 | 15671876 | ID=Msa0396820;Name=Msa0396820 |
| chr3_2 | mRNA | 15671876 | 15673597 | 15671876 | ID=Msa0396820-mRNA-1;Parent=Msa0396820;Name=Msa0396820-mRNA-1;_AED=0.29;_eAED=0.29;_QI=42|1|1|1|1|1|3|142|191 |
| chr3_2 | exon | 15671876 | 15671996 | 15671876 | ID=Msa0396820-mRNA-1:exon:3504;Parent=Msa0396820-mRNA-1 |
| chr3_2 | exon | 15672236 | 15672427 | 15672236 | ID=Msa0396820-mRNA-1:exon:3505;Parent=Msa0396820-mRNA-1 |
| chr3_2 | exon | 15673151 | 15673597 | 15673151 | ID=Msa0396820-mRNA-1:exon:3506;Parent=Msa0396820-mRNA-1 |
| chr3_2 | five_prime_UTR | 15671876 | 15671917 | 15671876 | ID=Msa0396820-mRNA-1:five_prime_utr;Parent=Msa0396820-mRNA-1 |
| chr3_2 | CDS | 15671918 | 15671996 | 15671918 | ID=Msa0396820-mRNA-1:cds;Parent=Msa0396820-mRNA-1 |
| chr3_2 | CDS | 15672236 | 15672427 | 15672236 | ID=Msa0396820-mRNA-1:cds;Parent=Msa0396820-mRNA-1 |
| chr3_2 | CDS | 15673151 | 15673455 | 15673151 | ID=Msa0396820-mRNA-1:cds;Parent=Msa0396820-mRNA-1 |
| chr3_2 | three_prime_UTR | 15673456 | 15673597 | 15673456 | ID=Msa0396820-mRNA-1:three_prime_utr;Parent=Msa0396820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
