Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491980 | XP_003598677.2 | 95.812 | 191 | 8 | 0 | 1 | 191 | 1 | 191 | 6.03e-130 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491980 | sp|Q9LK88|NQR_ARATH | 72.193 | 187 | 52 | 0 | 4 | 190 | 10 | 196 | 1.75e-95 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491980 | G7IW39 | 95.812 | 191 | 8 | 0 | 1 | 191 | 1 | 191 | 2.88e-130 | 372 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030800 | Msa0491980 | 0.801934 | 7.121969e-49 | -8.615850e-47 |
| Msa0107830 | Msa0491980 | 0.823426 | 1.394227e-53 | -8.615850e-47 |
| Msa0129290 | Msa0491980 | 0.820782 | 5.718501e-53 | -8.615850e-47 |
| Msa0143640 | Msa0491980 | 0.806998 | 6.265541e-50 | -8.615850e-47 |
| Msa0150620 | Msa0491980 | 0.810311 | 1.227818e-50 | -8.615850e-47 |
| Msa0185100 | Msa0491980 | 0.803460 | 3.449135e-49 | -8.615850e-47 |
| Msa0193950 | Msa0491980 | 0.806336 | 8.641431e-50 | -8.615850e-47 |
| Msa0200090 | Msa0491980 | 0.809786 | 1.592917e-50 | -8.615850e-47 |
| Msa0378320 | Msa0491980 | 0.822865 | 1.884370e-53 | -8.615850e-47 |
| Msa0390200 | Msa0491980 | 0.822365 | 2.463284e-53 | -8.615850e-47 |
| Msa0393100 | Msa0491980 | 0.807266 | 5.496700e-50 | -8.615850e-47 |
| Msa0396820 | Msa0491980 | 0.886269 | 3.960292e-72 | -8.615850e-47 |
| Msa0396870 | Msa0491980 | 0.814632 | 1.395582e-51 | -8.615850e-47 |
| Msa0396880 | Msa0491980 | 0.838332 | 3.062896e-57 | -8.615850e-47 |
| Msa0400010 | Msa0491980 | 0.813804 | 2.125795e-51 | -8.615850e-47 |
| Msa0421080 | Msa0491980 | 0.822565 | 2.213197e-53 | -8.615850e-47 |
| Msa0427660 | Msa0491980 | 0.822477 | 2.319975e-53 | -8.615850e-47 |
| Msa0441750 | Msa0491980 | 0.821675 | 3.559641e-53 | -8.615850e-47 |
| Msa0444370 | Msa0491980 | 0.876752 | 1.087247e-68 | -8.615850e-47 |
| Msa0449490 | Msa0491980 | 0.807452 | 5.019638e-50 | -8.615850e-47 |
| Msa0460600 | Msa0491980 | 0.804458 | 2.139564e-49 | -8.615850e-47 |
| Msa0480540 | Msa0491980 | 0.809831 | 1.557580e-50 | -8.615850e-47 |
| Msa0480550 | Msa0491980 | 0.824656 | 7.172737e-54 | -8.615850e-47 |
| Msa0242720 | Msa0491980 | 0.834517 | 2.863746e-56 | -8.615850e-47 |
| Msa0265650 | Msa0491980 | 0.803367 | 3.606898e-49 | -8.615850e-47 |
| Msa0267900 | Msa0491980 | 0.811324 | 7.412704e-51 | -8.615850e-47 |
| Msa0271700 | Msa0491980 | 0.833276 | 5.853598e-56 | -8.615850e-47 |
| Msa0271720 | Msa0491980 | 0.834205 | 3.429848e-56 | -8.615850e-47 |
| Msa0275730 | Msa0491980 | 0.817084 | 3.961804e-52 | -8.615850e-47 |
| Msa0310190 | Msa0491980 | 0.831594 | 1.528234e-55 | -8.615850e-47 |
| Msa0319680 | Msa0491980 | 0.805518 | 1.284273e-49 | -8.615850e-47 |
| Msa0320170 | Msa0491980 | 0.826411 | 2.753376e-54 | -8.615850e-47 |
| Msa0324810 | Msa0491980 | 0.824032 | 1.005410e-53 | -8.615850e-47 |
| Msa0345890 | Msa0491980 | 0.808117 | 3.625733e-50 | -8.615850e-47 |
| Msa0347320 | Msa0491980 | 0.816807 | 4.572136e-52 | -8.615850e-47 |
| Msa0348460 | Msa0491980 | 0.890998 | 5.928427e-74 | -8.615850e-47 |
| Msa0488580 | Msa0491980 | 0.800227 | 1.591389e-48 | -8.615850e-47 |
| Msa0489370 | Msa0491980 | 0.802985 | 4.326142e-49 | -8.615850e-47 |
| Msa0491980 | Msa0493870 | 0.835546 | 1.575540e-56 | -8.615850e-47 |
| Msa0491980 | Msa0497860 | 0.810843 | 9.421696e-51 | -8.615850e-47 |
| Msa0491980 | Msa0500440 | 0.814360 | 1.602925e-51 | -8.615850e-47 |
| Msa0491980 | Msa0518490 | 0.810462 | 1.138766e-50 | -8.615850e-47 |
| Msa0491980 | Msa0531050 | 0.817503 | 3.188154e-52 | -8.615850e-47 |
| Msa0491980 | Msa0534610 | 0.820373 | 7.098254e-53 | -8.615850e-47 |
| Msa0491980 | Msa0557240 | 0.818743 | 1.671620e-52 | -8.615850e-47 |
| Msa0491980 | Msa0561830 | 0.800429 | 1.447337e-48 | -8.615850e-47 |
| Msa0491980 | Msa0566530 | 0.846562 | 2.009750e-59 | -8.615850e-47 |
| Msa0491980 | Msa0568780 | -0.807104 | 5.948795e-50 | -8.615850e-47 |
| Msa0491980 | Msa0588730 | 0.818436 | 1.962198e-52 | -8.615850e-47 |
| Msa0491980 | Msa0590810 | 0.813003 | 3.188343e-51 | -8.615850e-47 |
| Msa0491980 | Msa0629030 | 0.822339 | 2.497753e-53 | -8.615850e-47 |
| Msa0491980 | Msa0652590 | 0.837311 | 5.600853e-57 | -8.615850e-47 |
| Msa0491980 | Msa0655370 | 0.800180 | 1.626152e-48 | -8.615850e-47 |
| Msa0491980 | Msa0657340 | 0.800125 | 1.669272e-48 | -8.615850e-47 |
| Msa0491980 | Msa0666580 | 0.830066 | 3.619425e-55 | -8.615850e-47 |
| Msa0491980 | Msa0669350 | 0.824769 | 6.745718e-54 | -8.615850e-47 |
| Msa0491980 | Msa0675590 | 0.817311 | 3.521084e-52 | -8.615850e-47 |
| Msa0491980 | Msa0694320 | 0.832330 | 1.005438e-55 | -8.615850e-47 |
| Msa0491980 | Msa0699170 | 0.803368 | 3.604331e-49 | -8.615850e-47 |
| Msa0491980 | Msa0701430 | 0.808815 | 2.572726e-50 | -8.615850e-47 |
| Msa0491980 | Msa0703030 | 0.801459 | 8.914588e-49 | -8.615850e-47 |
| Msa0491980 | Msa0704560 | 0.804177 | 2.447704e-49 | -8.615850e-47 |
| Msa0491980 | Msa0716620 | 0.827780 | 1.294741e-54 | -8.615850e-47 |
| Msa0491980 | Msa0727230 | 0.807446 | 5.034327e-50 | -8.615850e-47 |
| Msa0491980 | Msa0731580 | 0.809265 | 2.060904e-50 | -8.615850e-47 |
| Msa0491980 | Msa0744550 | 0.812047 | 5.160133e-51 | -8.615850e-47 |
| Msa0491980 | Msa0744560 | 0.824601 | 7.389817e-54 | -8.615850e-47 |
| Msa0491980 | Msa0744710 | 0.841366 | 4.964495e-58 | -8.615850e-47 |
| Msa0491980 | Msa0750830 | 0.814570 | 1.440173e-51 | -8.615850e-47 |
| Msa0491980 | Msa0772350 | 0.813978 | 1.946517e-51 | -8.615850e-47 |
| Msa0491980 | Msa0794200 | 0.814955 | 1.183278e-51 | -8.615850e-47 |
| Msa0491980 | Msa0795320 | 0.824702 | 6.995401e-54 | -8.615850e-47 |
| Msa0491980 | Msa0802600 | 0.800765 | 1.236218e-48 | -8.615850e-47 |
| Msa0491980 | Msa0813710 | 0.803677 | 3.110044e-49 | -8.615850e-47 |
| Msa0491980 | Msa0826240 | 0.845864 | 3.112312e-59 | -8.615850e-47 |
| Msa0491980 | Msa0837550 | 0.806982 | 6.312252e-50 | -8.615850e-47 |
| Msa0491980 | Msa0865820 | 0.804740 | 1.868359e-49 | -8.615850e-47 |
| Msa0491980 | Msa0865830 | 0.803780 | 2.960609e-49 | -8.615850e-47 |
| Msa0491980 | Msa0874750 | 0.811664 | 6.250769e-51 | -8.615850e-47 |
| Msa0491980 | Msa0976400 | 0.827195 | 1.789355e-54 | -8.615850e-47 |
| Msa0491980 | Msa0985380 | 0.805941 | 1.046767e-49 | -8.615850e-47 |
| Msa0491980 | Msa1016100 | 0.814706 | 1.344073e-51 | -8.615850e-47 |
| Msa0491980 | Msa1023430 | 0.811042 | 8.532812e-51 | -8.615850e-47 |
| Msa0491980 | Msa1030210 | 0.835729 | 1.416728e-56 | -8.615850e-47 |
| Msa0491980 | Msa1035050 | 0.823055 | 1.701837e-53 | -8.615850e-47 |
| Msa0491980 | Msa1061840 | 0.825179 | 5.398532e-54 | -8.615850e-47 |
| Msa0491980 | Msa1069250 | 0.845861 | 3.117552e-59 | -8.615850e-47 |
| Msa0491980 | Msa1071350 | 0.805049 | 1.610292e-49 | -8.615850e-47 |
| Msa0491980 | Msa1075090 | 0.826690 | 2.362168e-54 | -8.615850e-47 |
| Msa0491980 | Msa1077970 | 0.812508 | 4.093131e-51 | -8.615850e-47 |
| Msa0491980 | Msa1095590 | 0.817966 | 2.507128e-52 | -8.615850e-47 |
| Msa0491980 | Msa1102210 | 0.813413 | 2.591883e-51 | -8.615850e-47 |
| Msa0491980 | Msa1105320 | 0.801693 | 7.983122e-49 | -8.615850e-47 |
| Msa0491980 | Msa1107510 | 0.823435 | 1.387431e-53 | -8.615850e-47 |
| Msa0491980 | Msa1110900 | 0.862730 | 4.119900e-64 | -8.615850e-47 |
| Msa0491980 | Msa1120580 | 0.810357 | 1.200282e-50 | -8.615850e-47 |
| Msa0491980 | Msa1131120 | 0.840137 | 1.041916e-57 | -8.615850e-47 |
| Msa0491980 | Msa1136630 | 0.802626 | 5.131662e-49 | -8.615850e-47 |
| Msa0491980 | Msa1137750 | 0.809639 | 1.713454e-50 | -8.615850e-47 |
| Msa0491980 | Msa1142390 | 0.826459 | 2.681043e-54 | -8.615850e-47 |
| Msa0491980 | Msa1151070 | 0.804216 | 2.402630e-49 | -8.615850e-47 |
| Msa0491980 | Msa1157110 | 0.807103 | 5.951908e-50 | -8.615850e-47 |
| Msa0491980 | Msa1174280 | 0.819839 | 9.407068e-53 | -8.615850e-47 |
| Msa0491980 | Msa1202110 | 0.848340 | 6.524269e-60 | -8.615850e-47 |
| Msa0491980 | Msa1211610 | 0.803908 | 2.784280e-49 | -8.615850e-47 |
| Msa0491980 | Msa1221520 | 0.820697 | 5.981019e-53 | -8.615850e-47 |
| Msa0491980 | Msa1223560 | 0.818166 | 2.258928e-52 | -8.615850e-47 |
| Msa0491980 | Msa1254870 | 0.844282 | 8.324296e-59 | -8.615850e-47 |
| Msa0491980 | Msa1262540 | 0.801295 | 9.631321e-49 | -8.615850e-47 |
| Msa0491980 | Msa1263500 | 0.809379 | 1.947944e-50 | -8.615850e-47 |
| Msa0491980 | Msa1264940 | 0.826255 | 2.999255e-54 | -8.615850e-47 |
| Msa0491980 | Msa1303150 | 0.828838 | 7.197678e-55 | -8.615850e-47 |
| Msa0491980 | Msa1320160 | 0.808704 | 2.717265e-50 | -8.615850e-47 |
| Msa0491980 | Msa1328430 | 0.844167 | 8.941861e-59 | -8.615850e-47 |
| Msa0491980 | Msa1334000 | 0.814689 | 1.355692e-51 | -8.615850e-47 |
| Msa0491980 | Msa1359770 | 0.813903 | 2.022249e-51 | -8.615850e-47 |
| Msa0491980 | Msa1382740 | 0.810054 | 1.394687e-50 | -8.615850e-47 |
| Msa0491980 | Msa1387610 | 0.807557 | 4.769250e-50 | -8.615850e-47 |
| Msa0491980 | Msa1398120 | 0.829128 | 6.122922e-55 | -8.615850e-47 |
| Msa0491980 | Msa1438160 | 0.815648 | 8.300755e-52 | -8.615850e-47 |
| Msa0491980 | Msa1439780 | 0.803506 | 3.375038e-49 | -8.615850e-47 |
| Msa0491980 | Msa1449470 | 0.819224 | 1.299242e-52 | -8.615850e-47 |
| Msa0491980 | Msa1453890 | 0.812735 | 3.650842e-51 | -8.615850e-47 |
| Msa0491980 | Msa1459920 | 0.825665 | 4.141646e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491980 | MtrunA17_Chr3g0084221 | 95.812 | 191 | 8 | 0 | 1 | 191 | 1 | 191 | 5.55e-134 | 372 |
| Msa0491980 | MtrunA17_Chr3g0084201 | 85.340 | 191 | 27 | 1 | 1 | 191 | 1 | 190 | 3.59e-118 | 333 |
| Msa0491980 | MtrunA17_Chr3g0084161 | 78.010 | 191 | 42 | 0 | 1 | 191 | 1 | 191 | 6.23e-110 | 312 |
| Msa0491980 | MtrunA17_Chr8g0353131 | 75.263 | 190 | 47 | 0 | 2 | 191 | 3 | 192 | 1.60e-107 | 306 |
| Msa0491980 | MtrunA17_Chr3g0084191 | 68.557 | 194 | 54 | 2 | 1 | 189 | 1 | 192 | 2.03e-89 | 270 |
| Msa0491980 | MtrunA17_Chr3g0082411 | 61.905 | 63 | 19 | 1 | 50 | 107 | 1 | 63 | 1.25e-22 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491980 | AT3G27890.1 | 72.193 | 187 | 52 | 0 | 4 | 190 | 10 | 196 | 1.78e-96 | 278 |
Find 41 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCCATTTCAAGCTATTTC+TGG | 0.136711 | 3_4:-14966301 | None:intergenic |
| AACTCCCTCCAAATTATTCT+TGG | 0.252574 | 3_4:-14966217 | None:intergenic |
| TGAAGATGCCAAGAATAATT+TGG | 0.284270 | 3_4:+14966209 | Msa0491980:CDS |
| TAACATGGCTGGAGTAATTA+AGG | 0.315701 | 3_4:+14964746 | Msa0491980:exon |
| CATCAAGACCACCAAATGTT+TGG | 0.317863 | 3_4:+14966010 | Msa0491980:CDS |
| ATTTGTTCTTTATTTACATT+TGG | 0.343120 | 3_4:+14966387 | Msa0491980:three_prime_UTR |
| GGCTTTCTAGCCCAAACATT+TGG | 0.344063 | 3_4:-14966021 | None:intergenic |
| CACTACCATCTCCGACAAAT+TGG | 0.356266 | 3_4:+14966090 | Msa0491980:CDS |
| CAATCAATTGCATTCTTTAG+TGG | 0.360817 | 3_4:-14965985 | None:intergenic |
| ATTAAGGTTGTTGCTATCTC+TGG | 0.365275 | 3_4:+14964762 | Msa0491980:CDS |
| CAGCCTCCAGCAAAATTTAA+CGG | 0.370197 | 3_4:+14966168 | Msa0491980:CDS |
| CACTAAAGAATGCAATTGAT+TGG | 0.393700 | 3_4:+14965986 | Msa0491980:CDS |
| GTTCCAGAAATAGCTTGAAA+TGG | 0.396395 | 3_4:+14966298 | Msa0491980:three_prime_UTR |
| CGAAAAGCTTCAACTTCAGC+TGG | 0.413282 | 3_4:-14965173 | None:intergenic |
| GCATTTACCCTTCAACTTCA+AGG | 0.415648 | 3_4:+14966255 | Msa0491980:CDS |
| GAGACAGAATAATTATATTC+AGG | 0.417383 | 3_4:-14965236 | None:intergenic |
| ATCAAGACCACCAAATGTTT+GGG | 0.428497 | 3_4:+14966011 | Msa0491980:CDS |
| GAATATAATTATTCTGTCTC+AGG | 0.442769 | 3_4:+14965239 | Msa0491980:CDS |
| TTGAAGGGTAAATGCCTTCA+AGG | 0.460642 | 3_4:-14966247 | None:intergenic |
| ACTAAAGAATGCAATTGATT+GGG | 0.467662 | 3_4:+14965987 | Msa0491980:CDS |
| AACACCGGTCTCATCCGTTC+TGG | 0.485622 | 3_4:+14964807 | Msa0491980:CDS |
| AACACTGATCTTGAGATAGA+AGG | 0.488408 | 3_4:+14965143 | Msa0491980:CDS |
| TTTCTAGCCCAAACATTTGG+TGG | 0.496551 | 3_4:-14966018 | None:intergenic |
| TGATTAACAAATAACATGGC+TGG | 0.529188 | 3_4:+14964735 | Msa0491980:exon |
| CCAGCAAAATTTAACGGTGA+TGG | 0.537260 | 3_4:+14966174 | Msa0491980:CDS |
| CGACGAAAACTCCAATTTGT+CGG | 0.538450 | 3_4:-14966101 | None:intergenic |
| GCTGCAATAGTGAGTGTTGG+AGG | 0.549316 | 3_4:+14966045 | Msa0491980:CDS |
| AAACTCCAATTTGTCGGAGA+TGG | 0.555469 | 3_4:-14966095 | None:intergenic |
| ATGTTATTTGTTAATCAATG+TGG | 0.570266 | 3_4:-14964729 | None:intergenic |
| CCAACACTCACTATTGCAGC+AGG | 0.576426 | 3_4:-14966042 | None:intergenic |
| GTGAGTGTTGGAGGAGGACA+CGG | 0.590742 | 3_4:+14966054 | Msa0491980:CDS |
| CCAACCAGAACGGATGAGAC+CGG | 0.599652 | 3_4:-14964811 | None:intergenic |
| AGATGCCAAGAATAATTTGG+AGG | 0.599992 | 3_4:+14966212 | Msa0491980:CDS |
| GATGCCAAGAATAATTTGGA+GGG | 0.601338 | 3_4:+14966213 | Msa0491980:CDS |
| TCAAGATCAGTGTTCAACAT+TGG | 0.603076 | 3_4:-14965134 | None:intergenic |
| CGAAAAGCTTCTTACAACAC+CGG | 0.617859 | 3_4:+14964792 | Msa0491980:CDS |
| CCTGCTGCAATAGTGAGTGT+TGG | 0.618578 | 3_4:+14966042 | Msa0491980:CDS |
| GAAGTAGGAACCAACCAGAA+CGG | 0.644564 | 3_4:-14964821 | None:intergenic |
| ACATTGATTAACAAATAACA+TGG | 0.651336 | 3_4:+14964731 | Msa0491980:exon |
| GCAATAGTGAGTGTTGGAGG+AGG | 0.656596 | 3_4:+14966048 | Msa0491980:CDS |
| AGTGTTGGAGGAGGACACGG+TGG | 0.780760 | 3_4:+14966057 | Msa0491980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTATTATTGATGA+GGG | + | chr3_4:14965043-14965062 | Msa0491980:intron | 10.0% |
| !!! | TTTACTTATATATTTCATTT+TGG | - | chr3_4:14965395-14965414 | None:intergenic | 10.0% |
| !! | TAATATGTTGAAATTTAAAT+GGG | + | chr3_4:14965614-14965633 | Msa0491980:intron | 10.0% |
| !! | TTAATTGGTAAAATTTAAAT+AGG | - | chr3_4:14965680-14965699 | None:intergenic | 10.0% |
| !!! | ATTTTAATTATTATTGATGA+GGG | + | chr3_4:14965043-14965062 | Msa0491980:intron | 10.0% |
| !!! | TTTACTTATATATTTCATTT+TGG | - | chr3_4:14965395-14965414 | None:intergenic | 10.0% |
| !! | TAATATGTTGAAATTTAAAT+GGG | + | chr3_4:14965614-14965633 | Msa0491980:intron | 10.0% |
| !! | TTAATTGGTAAAATTTAAAT+AGG | - | chr3_4:14965680-14965699 | None:intergenic | 10.0% |
| !!! | GATTTTAATTATTATTGATG+AGG | + | chr3_4:14965042-14965061 | Msa0491980:intron | 15.0% |
| !! | CTAATATGTTGAAATTTAAA+TGG | + | chr3_4:14965613-14965632 | Msa0491980:intron | 15.0% |
| !!! | TAAATTTTACCAATTAAAGA+TGG | + | chr3_4:14965683-14965702 | Msa0491980:intron | 15.0% |
| !! | TGATAAAAAAAATCAATACT+TGG | - | chr3_4:14965830-14965849 | None:intergenic | 15.0% |
| !!! | ATTTGTTCTTTATTTACATT+TGG | + | chr3_4:14966387-14966406 | Msa0491980:three_prime_UTR | 15.0% |
| !!! | GATTTTAATTATTATTGATG+AGG | + | chr3_4:14965042-14965061 | Msa0491980:intron | 15.0% |
| !! | CTAATATGTTGAAATTTAAA+TGG | + | chr3_4:14965613-14965632 | Msa0491980:intron | 15.0% |
| !!! | TAAATTTTACCAATTAAAGA+TGG | + | chr3_4:14965683-14965702 | Msa0491980:intron | 15.0% |
| !! | TGATAAAAAAAATCAATACT+TGG | - | chr3_4:14965830-14965849 | None:intergenic | 15.0% |
| !!! | ATTTGTTCTTTATTTACATT+TGG | + | chr3_4:14966387-14966406 | Msa0491980:three_prime_UTR | 15.0% |
| !!! | ATGTTATTTGTTAATCAATG+TGG | - | chr3_4:14964732-14964751 | None:intergenic | 20.0% |
| !!! | ACATTGATTAACAAATAACA+TGG | + | chr3_4:14964731-14964750 | Msa0491980:exon | 20.0% |
| !! | AACAAAACGTTTATTATCAA+AGG | - | chr3_4:14965311-14965330 | None:intergenic | 20.0% |
| !! | TGTTTGTGTTTAATTAAAGA+TGG | + | chr3_4:14965708-14965727 | Msa0491980:intron | 20.0% |
| !! | TAACAACAAATTCTCTAATT+CGG | - | chr3_4:14965747-14965766 | None:intergenic | 20.0% |
| !! | TTATAAAGTGAATTAGAGAA+TGG | + | chr3_4:14965886-14965905 | Msa0491980:intron | 20.0% |
| !!! | ATGTTATTTGTTAATCAATG+TGG | - | chr3_4:14964732-14964751 | None:intergenic | 20.0% |
| !!! | ACATTGATTAACAAATAACA+TGG | + | chr3_4:14964731-14964750 | Msa0491980:exon | 20.0% |
| !! | AACAAAACGTTTATTATCAA+AGG | - | chr3_4:14965311-14965330 | None:intergenic | 20.0% |
| !! | TGTTTGTGTTTAATTAAAGA+TGG | + | chr3_4:14965708-14965727 | Msa0491980:intron | 20.0% |
| !! | TAACAACAAATTCTCTAATT+CGG | - | chr3_4:14965747-14965766 | None:intergenic | 20.0% |
| !! | TTATAAAGTGAATTAGAGAA+TGG | + | chr3_4:14965886-14965905 | Msa0491980:intron | 20.0% |
| ! | GAGACAGAATAATTATATTC+AGG | - | chr3_4:14965239-14965258 | None:intergenic | 25.0% |
| ! | GAATATAATTATTCTGTCTC+AGG | + | chr3_4:14965239-14965258 | Msa0491980:CDS | 25.0% |
| ! | ATTATTTAGACCAAATGCAT+TGG | - | chr3_4:14965433-14965452 | None:intergenic | 25.0% |
| !!! | TTCTCAACACGTTATTTTTT+TGG | + | chr3_4:14965571-14965590 | Msa0491980:intron | 25.0% |
| ! | ACTAAAGAATGCAATTGATT+GGG | + | chr3_4:14965987-14966006 | Msa0491980:CDS | 25.0% |
| ! | AAACACGTTTAAGAAAAACT+CGG | - | chr3_4:14966148-14966167 | None:intergenic | 25.0% |
| ! | GAGACAGAATAATTATATTC+AGG | - | chr3_4:14965239-14965258 | None:intergenic | 25.0% |
| ! | GAATATAATTATTCTGTCTC+AGG | + | chr3_4:14965239-14965258 | Msa0491980:CDS | 25.0% |
| ! | ATTATTTAGACCAAATGCAT+TGG | - | chr3_4:14965433-14965452 | None:intergenic | 25.0% |
| !!! | TTCTCAACACGTTATTTTTT+TGG | + | chr3_4:14965571-14965590 | Msa0491980:intron | 25.0% |
| ! | ACTAAAGAATGCAATTGATT+GGG | + | chr3_4:14965987-14966006 | Msa0491980:CDS | 25.0% |
| ! | AAACACGTTTAAGAAAAACT+CGG | - | chr3_4:14966148-14966167 | None:intergenic | 25.0% |
| TGATTAACAAATAACATGGC+TGG | + | chr3_4:14964735-14964754 | Msa0491980:exon | 30.0% | |
| !! | GTTTACGTGCATTGATTAAT+TGG | + | chr3_4:14965007-14965026 | Msa0491980:intron | 30.0% |
| AATTGAGCTTAGCAAAAATG+TGG | + | chr3_4:14965070-14965089 | Msa0491980:CDS | 30.0% | |
| AAGAAAACATCATGTTCATG+TGG | + | chr3_4:14965263-14965282 | Msa0491980:intron | 30.0% | |
| AGAAAACATCATGTTCATGT+GGG | + | chr3_4:14965264-14965283 | Msa0491980:intron | 30.0% | |
| GTATAAAAGTCCAATGCATT+TGG | + | chr3_4:14965420-14965439 | Msa0491980:intron | 30.0% | |
| TGTTGAAAAGAGTTTAGTAG+AGG | - | chr3_4:14965522-14965541 | None:intergenic | 30.0% | |
| TGGGTCATACTTAATTTATG+TGG | + | chr3_4:14965633-14965652 | Msa0491980:intron | 30.0% | |
| ACAAACACACCATCTTTAAT+TGG | - | chr3_4:14965695-14965714 | None:intergenic | 30.0% | |
| ! | GTGAATTAGAGAATGGTTTT+TGG | + | chr3_4:14965893-14965912 | Msa0491980:intron | 30.0% |
| !!! | GGTTTTTGGAATATTTGAGA+CGG | + | chr3_4:14965907-14965926 | Msa0491980:intron | 30.0% |
| CAATCAATTGCATTCTTTAG+TGG | - | chr3_4:14965988-14966007 | None:intergenic | 30.0% | |
| CACTAAAGAATGCAATTGAT+TGG | + | chr3_4:14965986-14966005 | Msa0491980:CDS | 30.0% | |
| AACACGTTTAAGAAAAACTC+GGG | - | chr3_4:14966147-14966166 | None:intergenic | 30.0% | |
| TGAAGATGCCAAGAATAATT+TGG | + | chr3_4:14966209-14966228 | Msa0491980:CDS | 30.0% | |
| ! | ATTTTTGCCTTGAAGTTGAA+GGG | - | chr3_4:14966265-14966284 | None:intergenic | 30.0% |
| ! | AATTTTTGCCTTGAAGTTGA+AGG | - | chr3_4:14966266-14966285 | None:intergenic | 30.0% |
| ! | ATTCCATTTCAAGCTATTTC+TGG | - | chr3_4:14966304-14966323 | None:intergenic | 30.0% |
| TGATTAACAAATAACATGGC+TGG | + | chr3_4:14964735-14964754 | Msa0491980:exon | 30.0% | |
| !! | GTTTACGTGCATTGATTAAT+TGG | + | chr3_4:14965007-14965026 | Msa0491980:intron | 30.0% |
| AATTGAGCTTAGCAAAAATG+TGG | + | chr3_4:14965070-14965089 | Msa0491980:CDS | 30.0% | |
| AAGAAAACATCATGTTCATG+TGG | + | chr3_4:14965263-14965282 | Msa0491980:intron | 30.0% | |
| AGAAAACATCATGTTCATGT+GGG | + | chr3_4:14965264-14965283 | Msa0491980:intron | 30.0% | |
| GTATAAAAGTCCAATGCATT+TGG | + | chr3_4:14965420-14965439 | Msa0491980:intron | 30.0% | |
| TGTTGAAAAGAGTTTAGTAG+AGG | - | chr3_4:14965522-14965541 | None:intergenic | 30.0% | |
| TGGGTCATACTTAATTTATG+TGG | + | chr3_4:14965633-14965652 | Msa0491980:intron | 30.0% | |
| ACAAACACACCATCTTTAAT+TGG | - | chr3_4:14965695-14965714 | None:intergenic | 30.0% | |
| ! | GTGAATTAGAGAATGGTTTT+TGG | + | chr3_4:14965893-14965912 | Msa0491980:intron | 30.0% |
| !!! | GGTTTTTGGAATATTTGAGA+CGG | + | chr3_4:14965907-14965926 | Msa0491980:intron | 30.0% |
| CAATCAATTGCATTCTTTAG+TGG | - | chr3_4:14965988-14966007 | None:intergenic | 30.0% | |
| CACTAAAGAATGCAATTGAT+TGG | + | chr3_4:14965986-14966005 | Msa0491980:CDS | 30.0% | |
| AACACGTTTAAGAAAAACTC+GGG | - | chr3_4:14966147-14966166 | None:intergenic | 30.0% | |
| TGAAGATGCCAAGAATAATT+TGG | + | chr3_4:14966209-14966228 | Msa0491980:CDS | 30.0% | |
| ! | ATTTTTGCCTTGAAGTTGAA+GGG | - | chr3_4:14966265-14966284 | None:intergenic | 30.0% |
| ! | AATTTTTGCCTTGAAGTTGA+AGG | - | chr3_4:14966266-14966285 | None:intergenic | 30.0% |
| ! | ATTCCATTTCAAGCTATTTC+TGG | - | chr3_4:14966304-14966323 | None:intergenic | 30.0% |
| TAACATGGCTGGAGTAATTA+AGG | + | chr3_4:14964746-14964765 | Msa0491980:exon | 35.0% | |
| ATTAAGGTTGTTGCTATCTC+TGG | + | chr3_4:14964762-14964781 | Msa0491980:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_4:14965137-14965156 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGATAGA+AGG | + | chr3_4:14965143-14965162 | Msa0491980:CDS | 35.0% | |
| GAAAACATCATGTTCATGTG+GGG | + | chr3_4:14965265-14965284 | Msa0491980:intron | 35.0% | |
| AAAACATCATGTTCATGTGG+GGG | + | chr3_4:14965266-14965285 | Msa0491980:intron | 35.0% | |
| !!! | GTTTTGTTTGATGTGTGTCT+TGG | + | chr3_4:14965323-14965342 | Msa0491980:intron | 35.0% |
| ATCAAGACCACCAAATGTTT+GGG | + | chr3_4:14966011-14966030 | Msa0491980:CDS | 35.0% | |
| AGATGCCAAGAATAATTTGG+AGG | + | chr3_4:14966212-14966231 | Msa0491980:CDS | 35.0% | |
| GATGCCAAGAATAATTTGGA+GGG | + | chr3_4:14966213-14966232 | Msa0491980:CDS | 35.0% | |
| AACTCCCTCCAAATTATTCT+TGG | - | chr3_4:14966220-14966239 | None:intergenic | 35.0% | |
| GTTCCAGAAATAGCTTGAAA+TGG | + | chr3_4:14966298-14966317 | Msa0491980:three_prime_UTR | 35.0% | |
| !!! | CTTCAGTCGTGATTTTTAGT+CGG | + | chr3_4:14966352-14966371 | Msa0491980:three_prime_UTR | 35.0% |
| TAACATGGCTGGAGTAATTA+AGG | + | chr3_4:14964746-14964765 | Msa0491980:exon | 35.0% | |
| ATTAAGGTTGTTGCTATCTC+TGG | + | chr3_4:14964762-14964781 | Msa0491980:CDS | 35.0% | |
| TCAAGATCAGTGTTCAACAT+TGG | - | chr3_4:14965137-14965156 | None:intergenic | 35.0% | |
| AACACTGATCTTGAGATAGA+AGG | + | chr3_4:14965143-14965162 | Msa0491980:CDS | 35.0% | |
| GAAAACATCATGTTCATGTG+GGG | + | chr3_4:14965265-14965284 | Msa0491980:intron | 35.0% | |
| AAAACATCATGTTCATGTGG+GGG | + | chr3_4:14965266-14965285 | Msa0491980:intron | 35.0% | |
| !!! | GTTTTGTTTGATGTGTGTCT+TGG | + | chr3_4:14965323-14965342 | Msa0491980:intron | 35.0% |
| ATCAAGACCACCAAATGTTT+GGG | + | chr3_4:14966011-14966030 | Msa0491980:CDS | 35.0% | |
| AGATGCCAAGAATAATTTGG+AGG | + | chr3_4:14966212-14966231 | Msa0491980:CDS | 35.0% | |
| GATGCCAAGAATAATTTGGA+GGG | + | chr3_4:14966213-14966232 | Msa0491980:CDS | 35.0% | |
| AACTCCCTCCAAATTATTCT+TGG | - | chr3_4:14966220-14966239 | None:intergenic | 35.0% | |
| GTTCCAGAAATAGCTTGAAA+TGG | + | chr3_4:14966298-14966317 | Msa0491980:three_prime_UTR | 35.0% | |
| !!! | CTTCAGTCGTGATTTTTAGT+CGG | + | chr3_4:14966352-14966371 | Msa0491980:three_prime_UTR | 35.0% |
| CGAAAAGCTTCTTACAACAC+CGG | + | chr3_4:14964792-14964811 | Msa0491980:CDS | 40.0% | |
| CCAGAATGGATGTAAGAAGT+AGG | - | chr3_4:14964839-14964858 | None:intergenic | 40.0% | |
| CCTACTTCTTACATCCATTC+TGG | + | chr3_4:14964836-14964855 | Msa0491980:intron | 40.0% | |
| TAACAACGAAACTGATGCAC+TGG | + | chr3_4:14964919-14964938 | Msa0491980:intron | 40.0% | |
| CTTAGCAAAAATGTGGTCGA+GGG | + | chr3_4:14965077-14965096 | Msa0491980:CDS | 40.0% | |
| CATCAAGACCACCAAATGTT+TGG | + | chr3_4:14966010-14966029 | Msa0491980:CDS | 40.0% | |
| ! | TTTCTAGCCCAAACATTTGG+TGG | - | chr3_4:14966021-14966040 | None:intergenic | 40.0% |
| AAACTCCAATTTGTCGGAGA+TGG | - | chr3_4:14966098-14966117 | None:intergenic | 40.0% | |
| CGACGAAAACTCCAATTTGT+CGG | - | chr3_4:14966104-14966123 | None:intergenic | 40.0% | |
| CAGCCTCCAGCAAAATTTAA+CGG | + | chr3_4:14966168-14966187 | Msa0491980:CDS | 40.0% | |
| ! | TCACCGTTAAATTTTGCTGG+AGG | - | chr3_4:14966174-14966193 | None:intergenic | 40.0% |
| ! | CCATCACCGTTAAATTTTGC+TGG | - | chr3_4:14966177-14966196 | None:intergenic | 40.0% |
| CCAGCAAAATTTAACGGTGA+TGG | + | chr3_4:14966174-14966193 | Msa0491980:CDS | 40.0% | |
| TTGAAGGGTAAATGCCTTCA+AGG | - | chr3_4:14966250-14966269 | None:intergenic | 40.0% | |
| GCATTTACCCTTCAACTTCA+AGG | + | chr3_4:14966255-14966274 | Msa0491980:CDS | 40.0% | |
| CGAAAAGCTTCTTACAACAC+CGG | + | chr3_4:14964792-14964811 | Msa0491980:CDS | 40.0% | |
| CCAGAATGGATGTAAGAAGT+AGG | - | chr3_4:14964839-14964858 | None:intergenic | 40.0% | |
| CCTACTTCTTACATCCATTC+TGG | + | chr3_4:14964836-14964855 | Msa0491980:intron | 40.0% | |
| TAACAACGAAACTGATGCAC+TGG | + | chr3_4:14964919-14964938 | Msa0491980:intron | 40.0% | |
| CTTAGCAAAAATGTGGTCGA+GGG | + | chr3_4:14965077-14965096 | Msa0491980:CDS | 40.0% | |
| CATCAAGACCACCAAATGTT+TGG | + | chr3_4:14966010-14966029 | Msa0491980:CDS | 40.0% | |
| ! | TTTCTAGCCCAAACATTTGG+TGG | - | chr3_4:14966021-14966040 | None:intergenic | 40.0% |
| AAACTCCAATTTGTCGGAGA+TGG | - | chr3_4:14966098-14966117 | None:intergenic | 40.0% | |
| CGACGAAAACTCCAATTTGT+CGG | - | chr3_4:14966104-14966123 | None:intergenic | 40.0% | |
| CAGCCTCCAGCAAAATTTAA+CGG | + | chr3_4:14966168-14966187 | Msa0491980:CDS | 40.0% | |
| ! | TCACCGTTAAATTTTGCTGG+AGG | - | chr3_4:14966174-14966193 | None:intergenic | 40.0% |
| ! | CCATCACCGTTAAATTTTGC+TGG | - | chr3_4:14966177-14966196 | None:intergenic | 40.0% |
| CCAGCAAAATTTAACGGTGA+TGG | + | chr3_4:14966174-14966193 | Msa0491980:CDS | 40.0% | |
| TTGAAGGGTAAATGCCTTCA+AGG | - | chr3_4:14966250-14966269 | None:intergenic | 40.0% | |
| GCATTTACCCTTCAACTTCA+AGG | + | chr3_4:14966255-14966274 | Msa0491980:CDS | 40.0% | |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_4:14964824-14964843 | None:intergenic | 45.0% | |
| CTGGTCTCATTCAACCAGAA+TGG | - | chr3_4:14964853-14964872 | None:intergenic | 45.0% | |
| GCTTAGCAAAAATGTGGTCG+AGG | + | chr3_4:14965076-14965095 | Msa0491980:CDS | 45.0% | |
| CGAAAAGCTTCAACTTCAGC+TGG | - | chr3_4:14965176-14965195 | None:intergenic | 45.0% | |
| ! | GGCTTTCTAGCCCAAACATT+TGG | - | chr3_4:14966024-14966043 | None:intergenic | 45.0% |
| CACTACCATCTCCGACAAAT+TGG | + | chr3_4:14966090-14966109 | Msa0491980:CDS | 45.0% | |
| ! | GGGAGTTCTTTTGTCCTTGA+AGG | + | chr3_4:14966233-14966252 | Msa0491980:CDS | 45.0% |
| GAAGTAGGAACCAACCAGAA+CGG | - | chr3_4:14964824-14964843 | None:intergenic | 45.0% | |
| CTGGTCTCATTCAACCAGAA+TGG | - | chr3_4:14964853-14964872 | None:intergenic | 45.0% | |
| GCTTAGCAAAAATGTGGTCG+AGG | + | chr3_4:14965076-14965095 | Msa0491980:CDS | 45.0% | |
| CGAAAAGCTTCAACTTCAGC+TGG | - | chr3_4:14965176-14965195 | None:intergenic | 45.0% | |
| ! | GGCTTTCTAGCCCAAACATT+TGG | - | chr3_4:14966024-14966043 | None:intergenic | 45.0% |
| CACTACCATCTCCGACAAAT+TGG | + | chr3_4:14966090-14966109 | Msa0491980:CDS | 45.0% | |
| ! | GGGAGTTCTTTTGTCCTTGA+AGG | + | chr3_4:14966233-14966252 | Msa0491980:CDS | 45.0% |
| ACGATGAAACTGACGCACAC+TGG | - | chr3_4:14964872-14964891 | None:intergenic | 50.0% | |
| CCAACACTCACTATTGCAGC+AGG | - | chr3_4:14966045-14966064 | None:intergenic | 50.0% | |
| CCTGCTGCAATAGTGAGTGT+TGG | + | chr3_4:14966042-14966061 | Msa0491980:CDS | 50.0% | |
| !! | GCTGCAATAGTGAGTGTTGG+AGG | + | chr3_4:14966045-14966064 | Msa0491980:CDS | 50.0% |
| !! | GCAATAGTGAGTGTTGGAGG+AGG | + | chr3_4:14966048-14966067 | Msa0491980:CDS | 50.0% |
| ACGATGAAACTGACGCACAC+TGG | - | chr3_4:14964872-14964891 | None:intergenic | 50.0% | |
| CCAACACTCACTATTGCAGC+AGG | - | chr3_4:14966045-14966064 | None:intergenic | 50.0% | |
| CCTGCTGCAATAGTGAGTGT+TGG | + | chr3_4:14966042-14966061 | Msa0491980:CDS | 50.0% | |
| !! | GCTGCAATAGTGAGTGTTGG+AGG | + | chr3_4:14966045-14966064 | Msa0491980:CDS | 50.0% |
| !! | GCAATAGTGAGTGTTGGAGG+AGG | + | chr3_4:14966048-14966067 | Msa0491980:CDS | 50.0% |
| AACACCGGTCTCATCCGTTC+TGG | + | chr3_4:14964807-14964826 | Msa0491980:CDS | 55.0% | |
| CCAACCAGAACGGATGAGAC+CGG | - | chr3_4:14964814-14964833 | None:intergenic | 55.0% | |
| !! | GTGAGTGTTGGAGGAGGACA+CGG | + | chr3_4:14966054-14966073 | Msa0491980:CDS | 55.0% |
| AACACCGGTCTCATCCGTTC+TGG | + | chr3_4:14964807-14964826 | Msa0491980:CDS | 55.0% | |
| CCAACCAGAACGGATGAGAC+CGG | - | chr3_4:14964814-14964833 | None:intergenic | 55.0% | |
| !! | GTGAGTGTTGGAGGAGGACA+CGG | + | chr3_4:14966054-14966073 | Msa0491980:CDS | 55.0% |
| CCGGTCTCATCCGTTCTGGT+TGG | + | chr3_4:14964811-14964830 | Msa0491980:intron | 60.0% | |
| ! | AGTGTTGGAGGAGGACACGG+TGG | + | chr3_4:14966057-14966076 | Msa0491980:CDS | 60.0% |
| CCGGTCTCATCCGTTCTGGT+TGG | + | chr3_4:14964811-14964830 | Msa0491980:intron | 60.0% | |
| ! | AGTGTTGGAGGAGGACACGG+TGG | + | chr3_4:14966057-14966076 | Msa0491980:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 14964708 | 14966429 | 14964708 | ID=Msa0491980;Name=Msa0491980 |
| chr3_4 | mRNA | 14964708 | 14966429 | 14964708 | ID=Msa0491980-mRNA-1;Parent=Msa0491980;Name=Msa0491980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=42|1|1|1|1|1|3|142|191 |
| chr3_4 | exon | 14964708 | 14964828 | 14964708 | ID=Msa0491980-mRNA-1:exon:4403;Parent=Msa0491980-mRNA-1 |
| chr3_4 | exon | 14965069 | 14965260 | 14965069 | ID=Msa0491980-mRNA-1:exon:4404;Parent=Msa0491980-mRNA-1 |
| chr3_4 | exon | 14965983 | 14966429 | 14965983 | ID=Msa0491980-mRNA-1:exon:4405;Parent=Msa0491980-mRNA-1 |
| chr3_4 | five_prime_UTR | 14964708 | 14964749 | 14964708 | ID=Msa0491980-mRNA-1:five_prime_utr;Parent=Msa0491980-mRNA-1 |
| chr3_4 | CDS | 14964750 | 14964828 | 14964750 | ID=Msa0491980-mRNA-1:cds;Parent=Msa0491980-mRNA-1 |
| chr3_4 | CDS | 14965069 | 14965260 | 14965069 | ID=Msa0491980-mRNA-1:cds;Parent=Msa0491980-mRNA-1 |
| chr3_4 | CDS | 14965983 | 14966287 | 14965983 | ID=Msa0491980-mRNA-1:cds;Parent=Msa0491980-mRNA-1 |
| chr3_4 | three_prime_UTR | 14966288 | 14966429 | 14966288 | ID=Msa0491980-mRNA-1:three_prime_utr;Parent=Msa0491980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
