AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0444370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444370 MtrunA17_Chr3g0084221 95.288 191 9 0 1 191 1 191 4.82e-133 370
Msa0444370 MtrunA17_Chr3g0084201 84.817 191 28 1 1 191 1 190 3.55e-116 327
Msa0444370 MtrunA17_Chr3g0084161 76.440 191 45 0 1 191 1 191 9.24e-108 306
Msa0444370 MtrunA17_Chr8g0353131 74.479 192 48 1 1 191 1 192 4.34e-106 302
Msa0444370 MtrunA17_Chr3g0084191 67.010 194 57 2 1 189 1 192 8.88e-87 264
Msa0444370 MtrunA17_Chr3g0082411 61.905 63 19 1 50 107 1 63 3.43e-22 85.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0444370 AT3G27890.1 72.581 186 51 0 5 190 11 196 1.63e-95 276

Find 43 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCATTTCAAGCTATTTC+TGG 0.136711 3_3:+17297489 None:intergenic
AACTCCCTCCAAATTATTCT+TGG 0.252574 3_3:+17297573 None:intergenic
TGAAGATGCCAAGAATAATT+TGG 0.284270 3_3:-17297581 Msa0444370:CDS
TAACATGGCTGGAGCAATTA+AGG 0.295357 3_3:-17299075 Msa0444370:exon
CATCAAGACCACCAAATGTT+TGG 0.317863 3_3:-17297780 Msa0444370:CDS
ATTTGTTCTTTATTTACATT+TGG 0.343120 3_3:-17297403 Msa0444370:three_prime_UTR
GGCTTTCTAGCCCAAACATT+TGG 0.344063 3_3:+17297769 None:intergenic
CACTACCATCTCCGACAAAT+TGG 0.356266 3_3:-17297700 Msa0444370:CDS
CAATCAATTGCATTCTTTAG+TGG 0.360817 3_3:+17297805 None:intergenic
ATTAAGGTTGTTGCTATCTC+TGG 0.365275 3_3:-17299059 Msa0444370:CDS
CGAAAAGTTTCAACTTCAGC+TGG 0.367736 3_3:+17298663 None:intergenic
CAGCCTCCAGCAAAATTTAA+CGG 0.370197 3_3:-17297622 Msa0444370:CDS
CACTAAAGAATGCAATTGAT+TGG 0.393700 3_3:-17297804 Msa0444370:CDS
GTTCCAGAAATAGCTTGAAA+TGG 0.396395 3_3:-17297492 Msa0444370:three_prime_UTR
GCATTTACCCTTCAACTTCA+AGG 0.415648 3_3:-17297535 Msa0444370:CDS
GAGACAGAATAATTATATTC+AGG 0.417383 3_3:+17298600 None:intergenic
ATCAAGACCACCAAATGTTT+GGG 0.428497 3_3:-17297779 Msa0444370:CDS
GAATATAATTATTCTGTCTC+AGG 0.442769 3_3:-17298597 Msa0444370:intron
TTGAAGGGTAAATGCCTTCA+AGG 0.460642 3_3:+17297543 None:intergenic
ACTAAAGAATGCAATTGATT+GGG 0.467662 3_3:-17297803 Msa0444370:CDS
AACACCGGTCTCATCCGTTC+TGG 0.476114 3_3:-17299014 Msa0444370:intron
TTTCTAGCCCAAACATTTGG+TGG 0.496551 3_3:+17297772 None:intergenic
CGAAAAGCTTCTTGCAACAC+CGG 0.526866 3_3:-17299029 Msa0444370:CDS
TGATTAACAAATAACATGGC+TGG 0.528778 3_3:-17299086 Msa0444370:exon
CCAGCAAAATTTAACGGTGA+TGG 0.537260 3_3:-17297616 Msa0444370:CDS
CGACGAAAACTCCAATTTGT+CGG 0.538450 3_3:+17297689 None:intergenic
GCTGCAATAGTGAGTGTTGG+AGG 0.549316 3_3:-17297745 Msa0444370:CDS
AAACTCCAATTTGTCGGAGA+TGG 0.555469 3_3:+17297695 None:intergenic
AACACTGATCTTGAGACAGA+AGG 0.569151 3_3:-17298693 Msa0444370:CDS
CCAACACTCACTATTGCAGC+AGG 0.576426 3_3:+17297748 None:intergenic
ACACTGATCTTGAGACAGAA+GGG 0.588342 3_3:-17298692 Msa0444370:CDS
GTGAGTGTTGGAGGAGGACA+CGG 0.590742 3_3:-17297736 Msa0444370:CDS
CCAACCAGAACGGATGAGAC+CGG 0.599652 3_3:+17299010 None:intergenic
AGATGCCAAGAATAATTTGG+AGG 0.599992 3_3:-17297578 Msa0444370:CDS
GATGCCAAGAATAATTTGGA+GGG 0.601338 3_3:-17297577 Msa0444370:CDS
TCAAGATCAGTGTTCAACAT+TGG 0.613907 3_3:+17298702 None:intergenic
CCTGCTGCAATAGTGAGTGT+TGG 0.618578 3_3:-17297748 Msa0444370:CDS
ACATTGATTAACAAATAACA+TGG 0.644516 3_3:-17299090 Msa0444370:exon
GAAGTAGGAACCAACCAGAA+CGG 0.644564 3_3:+17299000 None:intergenic
GCAATAGTGAGTGTTGGAGG+AGG 0.656596 3_3:-17297742 Msa0444370:CDS
ATAACATTGTAAATCAAACA+AGG 0.698016 3_3:+17297354 None:intergenic
TTGTAAATCAAACAAGGACA+AGG 0.707064 3_3:+17297360 None:intergenic
AGTGTTGGAGGAGGACACGG+TGG 0.780760 3_3:-17297733 Msa0444370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTACTTATATATTTCATTT+TGG + chr3_3:17298044-17298063 None:intergenic 10.0%
!! TAATATGTTGAAATTTAAAT+GGG - chr3_3:17298263-17298282 Msa0444370:intron 10.0%
!! TTAATTGGTAAAATTTAAAT+AGG + chr3_3:17298333-17298352 None:intergenic 10.0%
!! AAAAAAAAAAAATCAATACT+TGG + chr3_3:17298479-17298498 None:intergenic 10.0%
!!! TTTACTTATATATTTCATTT+TGG + chr3_3:17298044-17298063 None:intergenic 10.0%
!! TAATATGTTGAAATTTAAAT+GGG - chr3_3:17298263-17298282 Msa0444370:intron 10.0%
!! TTAATTGGTAAAATTTAAAT+AGG + chr3_3:17298333-17298352 None:intergenic 10.0%
!! AAAAAAAAAAAATCAATACT+TGG + chr3_3:17298479-17298498 None:intergenic 10.0%
!! TAAAAATAAGTAAATGCATT+TGG - chr3_3:17297927-17297946 Msa0444370:intron 15.0%
!! TAAAAATAAGTAAATGCATT+TGG + chr3_3:17297927-17297946 None:intergenic 15.0%
!! CTAATATGTTGAAATTTAAA+TGG - chr3_3:17298262-17298281 Msa0444370:intron 15.0%
!!! TAAATTTTACCAATTAAAGA+TGG - chr3_3:17298336-17298355 Msa0444370:intron 15.0%
!!! ATTTGTTCTTTATTTACATT+TGG - chr3_3:17299042-17299061 Msa0444370:CDS 15.0%
!! TAAAAATAAGTAAATGCATT+TGG - chr3_3:17297927-17297946 Msa0444370:intron 15.0%
!! TAAAAATAAGTAAATGCATT+TGG + chr3_3:17297927-17297946 None:intergenic 15.0%
!! CTAATATGTTGAAATTTAAA+TGG - chr3_3:17298262-17298281 Msa0444370:intron 15.0%
!!! TAAATTTTACCAATTAAAGA+TGG - chr3_3:17298336-17298355 Msa0444370:intron 15.0%
!!! ATTTGTTCTTTATTTACATT+TGG - chr3_3:17299042-17299061 Msa0444370:CDS 15.0%
!!! ACATTGATTAACAAATAACA+TGG - chr3_3:17297355-17297374 Msa0444370:three_prime_UTR 20.0%
!!! TTACTTATTTTTATTGTCGA+AGG + chr3_3:17297920-17297939 None:intergenic 20.0%
!! TAACAACAAATTCTCTAATT+CGG + chr3_3:17298396-17298415 None:intergenic 20.0%
!! TTATAAAGTGAATTAGAGAA+TGG - chr3_3:17298541-17298560 Msa0444370:intron 20.0%
!! ATAACATTGTAAATCAAACA+AGG + chr3_3:17299094-17299113 None:intergenic 20.0%
!!! ACATTGATTAACAAATAACA+TGG - chr3_3:17297355-17297374 Msa0444370:three_prime_UTR 20.0%
!!! TTACTTATTTTTATTGTCGA+AGG + chr3_3:17297920-17297939 None:intergenic 20.0%
!! TAACAACAAATTCTCTAATT+CGG + chr3_3:17298396-17298415 None:intergenic 20.0%
!! TTATAAAGTGAATTAGAGAA+TGG - chr3_3:17298541-17298560 Msa0444370:intron 20.0%
!! ATAACATTGTAAATCAAACA+AGG + chr3_3:17299094-17299113 None:intergenic 20.0%
!!! ATTTTGATTATTATCGACGA+GGG - chr3_3:17297652-17297671 Msa0444370:CDS 25.0%
! GAGACAGAATAATTATATTC+AGG + chr3_3:17297848-17297867 None:intergenic 25.0%
! GAATATAATTATTCTGTCTC+AGG - chr3_3:17297848-17297867 Msa0444370:intron 25.0%
! ATAATTTAGACCAAATGCAT+TGG + chr3_3:17298082-17298101 None:intergenic 25.0%
!!! TTCTCAACATGTTAGTTTTT+TGG - chr3_3:17298220-17298239 Msa0444370:intron 25.0%
! AAACACAAACCATCTTTAAT+TGG + chr3_3:17298348-17298367 None:intergenic 25.0%
! GGTTTGTGTTTAATTAAAGA+TGG - chr3_3:17298357-17298376 Msa0444370:intron 25.0%
! ACTAAAGAATGCAATTGATT+GGG - chr3_3:17298642-17298661 Msa0444370:CDS 25.0%
!!! ATTTTGATTATTATCGACGA+GGG - chr3_3:17297652-17297671 Msa0444370:CDS 25.0%
! GAGACAGAATAATTATATTC+AGG + chr3_3:17297848-17297867 None:intergenic 25.0%
! GAATATAATTATTCTGTCTC+AGG - chr3_3:17297848-17297867 Msa0444370:intron 25.0%
! ATAATTTAGACCAAATGCAT+TGG + chr3_3:17298082-17298101 None:intergenic 25.0%
!!! TTCTCAACATGTTAGTTTTT+TGG - chr3_3:17298220-17298239 Msa0444370:intron 25.0%
! AAACACAAACCATCTTTAAT+TGG + chr3_3:17298348-17298367 None:intergenic 25.0%
! GGTTTGTGTTTAATTAAAGA+TGG - chr3_3:17298357-17298376 Msa0444370:intron 25.0%
! ACTAAAGAATGCAATTGATT+GGG - chr3_3:17298642-17298661 Msa0444370:CDS 25.0%
TGATTAACAAATAACATGGC+TGG - chr3_3:17297359-17297378 Msa0444370:three_prime_UTR 30.0%
!!! GATTTTGATTATTATCGACG+AGG - chr3_3:17297651-17297670 Msa0444370:CDS 30.0%
TATTGAGCTGAGTAAAAATG+TGG - chr3_3:17297679-17297698 Msa0444370:CDS 30.0%
AAGAAAACATCATGTTCATG+TGG - chr3_3:17297872-17297891 Msa0444370:intron 30.0%
AGAAAACATCATGTTCATGT+GGG - chr3_3:17297873-17297892 Msa0444370:intron 30.0%
GTATAAAAGTCCAATGCATT+TGG - chr3_3:17298069-17298088 Msa0444370:intron 30.0%
TGTTGAAAAGAGTTTAGTAG+AGG + chr3_3:17298171-17298190 None:intergenic 30.0%
TGGGTCATACTAAATTTATG+TGG - chr3_3:17298282-17298301 Msa0444370:intron 30.0%
! GTGAATTAGAGAATGGTTTT+TGG - chr3_3:17298548-17298567 Msa0444370:intron 30.0%
!!! GGTTTTTGGAATATTTGAGA+CGG - chr3_3:17298562-17298581 Msa0444370:intron 30.0%
CAATCAATTGCATTCTTTAG+TGG + chr3_3:17298643-17298662 None:intergenic 30.0%
CACTAAAGAATGCAATTGAT+TGG - chr3_3:17298641-17298660 Msa0444370:CDS 30.0%
AAACGCGTTTAAGAAAAACT+CGG + chr3_3:17298803-17298822 None:intergenic 30.0%
TGAAGATGCCAAGAATAATT+TGG - chr3_3:17298864-17298883 Msa0444370:intron 30.0%
! ATTTTTGCCTTGAAGTTGAA+GGG + chr3_3:17298920-17298939 None:intergenic 30.0%
! AATTTTTGCCTTGAAGTTGA+AGG + chr3_3:17298921-17298940 None:intergenic 30.0%
! ATTCCATTTCAAGCTATTTC+TGG + chr3_3:17298959-17298978 None:intergenic 30.0%
! CTTCAGTCGTGATTTTTATT+CGG - chr3_3:17299007-17299026 Msa0444370:intron 30.0%
TTGTAAATCAAACAAGGACA+AGG + chr3_3:17299088-17299107 None:intergenic 30.0%
TGATTAACAAATAACATGGC+TGG - chr3_3:17297359-17297378 Msa0444370:three_prime_UTR 30.0%
!!! GATTTTGATTATTATCGACG+AGG - chr3_3:17297651-17297670 Msa0444370:CDS 30.0%
TATTGAGCTGAGTAAAAATG+TGG - chr3_3:17297679-17297698 Msa0444370:CDS 30.0%
AAGAAAACATCATGTTCATG+TGG - chr3_3:17297872-17297891 Msa0444370:intron 30.0%
AGAAAACATCATGTTCATGT+GGG - chr3_3:17297873-17297892 Msa0444370:intron 30.0%
GTATAAAAGTCCAATGCATT+TGG - chr3_3:17298069-17298088 Msa0444370:intron 30.0%
TGTTGAAAAGAGTTTAGTAG+AGG + chr3_3:17298171-17298190 None:intergenic 30.0%
TGGGTCATACTAAATTTATG+TGG - chr3_3:17298282-17298301 Msa0444370:intron 30.0%
! GTGAATTAGAGAATGGTTTT+TGG - chr3_3:17298548-17298567 Msa0444370:intron 30.0%
!!! GGTTTTTGGAATATTTGAGA+CGG - chr3_3:17298562-17298581 Msa0444370:intron 30.0%
CAATCAATTGCATTCTTTAG+TGG + chr3_3:17298643-17298662 None:intergenic 30.0%
CACTAAAGAATGCAATTGAT+TGG - chr3_3:17298641-17298660 Msa0444370:CDS 30.0%
AAACGCGTTTAAGAAAAACT+CGG + chr3_3:17298803-17298822 None:intergenic 30.0%
TGAAGATGCCAAGAATAATT+TGG - chr3_3:17298864-17298883 Msa0444370:intron 30.0%
! ATTTTTGCCTTGAAGTTGAA+GGG + chr3_3:17298920-17298939 None:intergenic 30.0%
! AATTTTTGCCTTGAAGTTGA+AGG + chr3_3:17298921-17298940 None:intergenic 30.0%
! ATTCCATTTCAAGCTATTTC+TGG + chr3_3:17298959-17298978 None:intergenic 30.0%
! CTTCAGTCGTGATTTTTATT+CGG - chr3_3:17299007-17299026 Msa0444370:intron 30.0%
TTGTAAATCAAACAAGGACA+AGG + chr3_3:17299088-17299107 None:intergenic 30.0%
ATTAAGGTTGTTGCTATCTC+TGG - chr3_3:17297386-17297405 Msa0444370:three_prime_UTR 35.0%
TCAAGATCAGTGTTCAACAT+TGG + chr3_3:17297746-17297765 None:intergenic 35.0%
GAAAACATCATGTTCATGTG+GGG - chr3_3:17297874-17297893 Msa0444370:intron 35.0%
AAAACATCATGTTCATGTGG+GGG - chr3_3:17297875-17297894 Msa0444370:intron 35.0%
ATCAAGACCACCAAATGTTT+GGG - chr3_3:17298666-17298685 Msa0444370:CDS 35.0%
AACGCGTTTAAGAAAAACTC+GGG + chr3_3:17298802-17298821 None:intergenic 35.0%
AGATGCCAAGAATAATTTGG+AGG - chr3_3:17298867-17298886 Msa0444370:intron 35.0%
GATGCCAAGAATAATTTGGA+GGG - chr3_3:17298868-17298887 Msa0444370:intron 35.0%
AACTCCCTCCAAATTATTCT+TGG + chr3_3:17298875-17298894 None:intergenic 35.0%
GTTCCAGAAATAGCTTGAAA+TGG - chr3_3:17298953-17298972 Msa0444370:intron 35.0%
ATTAAGGTTGTTGCTATCTC+TGG - chr3_3:17297386-17297405 Msa0444370:three_prime_UTR 35.0%
TCAAGATCAGTGTTCAACAT+TGG + chr3_3:17297746-17297765 None:intergenic 35.0%
GAAAACATCATGTTCATGTG+GGG - chr3_3:17297874-17297893 Msa0444370:intron 35.0%
AAAACATCATGTTCATGTGG+GGG - chr3_3:17297875-17297894 Msa0444370:intron 35.0%
ATCAAGACCACCAAATGTTT+GGG - chr3_3:17298666-17298685 Msa0444370:CDS 35.0%
AACGCGTTTAAGAAAAACTC+GGG + chr3_3:17298802-17298821 None:intergenic 35.0%
AGATGCCAAGAATAATTTGG+AGG - chr3_3:17298867-17298886 Msa0444370:intron 35.0%
GATGCCAAGAATAATTTGGA+GGG - chr3_3:17298868-17298887 Msa0444370:intron 35.0%
AACTCCCTCCAAATTATTCT+TGG + chr3_3:17298875-17298894 None:intergenic 35.0%
GTTCCAGAAATAGCTTGAAA+TGG - chr3_3:17298953-17298972 Msa0444370:intron 35.0%
TAACATGGCTGGAGCAATTA+AGG - chr3_3:17297370-17297389 Msa0444370:three_prime_UTR 40.0%
CCAGAATGGATGTAAGAAGT+AGG + chr3_3:17297463-17297482 None:intergenic 40.0%
CCTACTTCTTACATCCATTC+TGG - chr3_3:17297460-17297479 Msa0444370:three_prime_UTR 40.0%
CTGAGTAAAAATGTGGTCGA+GGG - chr3_3:17297686-17297705 Msa0444370:CDS 40.0%
AACACTGATCTTGAGACAGA+AGG - chr3_3:17297752-17297771 Msa0444370:CDS 40.0%
ACACTGATCTTGAGACAGAA+GGG - chr3_3:17297753-17297772 Msa0444370:CDS 40.0%
CGAAAAGTTTCAACTTCAGC+TGG + chr3_3:17297785-17297804 None:intergenic 40.0%
CATCAAGACCACCAAATGTT+TGG - chr3_3:17298665-17298684 Msa0444370:CDS 40.0%
! TTTCTAGCCCAAACATTTGG+TGG + chr3_3:17298676-17298695 None:intergenic 40.0%
AAACTCCAATTTGTCGGAGA+TGG + chr3_3:17298753-17298772 None:intergenic 40.0%
CGACGAAAACTCCAATTTGT+CGG + chr3_3:17298759-17298778 None:intergenic 40.0%
CAGCCTCCAGCAAAATTTAA+CGG - chr3_3:17298823-17298842 Msa0444370:intron 40.0%
! TCACCGTTAAATTTTGCTGG+AGG + chr3_3:17298829-17298848 None:intergenic 40.0%
! CCATCACCGTTAAATTTTGC+TGG + chr3_3:17298832-17298851 None:intergenic 40.0%
CCAGCAAAATTTAACGGTGA+TGG - chr3_3:17298829-17298848 Msa0444370:intron 40.0%
TTGAAGGGTAAATGCCTTCA+AGG + chr3_3:17298905-17298924 None:intergenic 40.0%
GCATTTACCCTTCAACTTCA+AGG - chr3_3:17298910-17298929 Msa0444370:intron 40.0%
TAACATGGCTGGAGCAATTA+AGG - chr3_3:17297370-17297389 Msa0444370:three_prime_UTR 40.0%
CCAGAATGGATGTAAGAAGT+AGG + chr3_3:17297463-17297482 None:intergenic 40.0%
CCTACTTCTTACATCCATTC+TGG - chr3_3:17297460-17297479 Msa0444370:three_prime_UTR 40.0%
CTGAGTAAAAATGTGGTCGA+GGG - chr3_3:17297686-17297705 Msa0444370:CDS 40.0%
AACACTGATCTTGAGACAGA+AGG - chr3_3:17297752-17297771 Msa0444370:CDS 40.0%
ACACTGATCTTGAGACAGAA+GGG - chr3_3:17297753-17297772 Msa0444370:CDS 40.0%
CGAAAAGTTTCAACTTCAGC+TGG + chr3_3:17297785-17297804 None:intergenic 40.0%
CATCAAGACCACCAAATGTT+TGG - chr3_3:17298665-17298684 Msa0444370:CDS 40.0%
! TTTCTAGCCCAAACATTTGG+TGG + chr3_3:17298676-17298695 None:intergenic 40.0%
AAACTCCAATTTGTCGGAGA+TGG + chr3_3:17298753-17298772 None:intergenic 40.0%
CGACGAAAACTCCAATTTGT+CGG + chr3_3:17298759-17298778 None:intergenic 40.0%
CAGCCTCCAGCAAAATTTAA+CGG - chr3_3:17298823-17298842 Msa0444370:intron 40.0%
! TCACCGTTAAATTTTGCTGG+AGG + chr3_3:17298829-17298848 None:intergenic 40.0%
! CCATCACCGTTAAATTTTGC+TGG + chr3_3:17298832-17298851 None:intergenic 40.0%
CCAGCAAAATTTAACGGTGA+TGG - chr3_3:17298829-17298848 Msa0444370:intron 40.0%
TTGAAGGGTAAATGCCTTCA+AGG + chr3_3:17298905-17298924 None:intergenic 40.0%
GCATTTACCCTTCAACTTCA+AGG - chr3_3:17298910-17298929 Msa0444370:intron 40.0%
CGAAAAGCTTCTTGCAACAC+CGG - chr3_3:17297416-17297435 Msa0444370:three_prime_UTR 45.0%
GAAGTAGGAACCAACCAGAA+CGG + chr3_3:17297448-17297467 None:intergenic 45.0%
CTGGTCTCATTCAACCAGAA+TGG + chr3_3:17297477-17297496 None:intergenic 45.0%
GCTGAGTAAAAATGTGGTCG+AGG - chr3_3:17297685-17297704 Msa0444370:CDS 45.0%
! GGCTTTCTAGCCCAAACATT+TGG + chr3_3:17298679-17298698 None:intergenic 45.0%
CACTACCATCTCCGACAAAT+TGG - chr3_3:17298745-17298764 Msa0444370:CDS 45.0%
! GGGAGTTCTTTTGTCCTTGA+AGG - chr3_3:17298888-17298907 Msa0444370:intron 45.0%
CGAAAAGCTTCTTGCAACAC+CGG - chr3_3:17297416-17297435 Msa0444370:three_prime_UTR 45.0%
GAAGTAGGAACCAACCAGAA+CGG + chr3_3:17297448-17297467 None:intergenic 45.0%
CTGGTCTCATTCAACCAGAA+TGG + chr3_3:17297477-17297496 None:intergenic 45.0%
GCTGAGTAAAAATGTGGTCG+AGG - chr3_3:17297685-17297704 Msa0444370:CDS 45.0%
! GGCTTTCTAGCCCAAACATT+TGG + chr3_3:17298679-17298698 None:intergenic 45.0%
CACTACCATCTCCGACAAAT+TGG - chr3_3:17298745-17298764 Msa0444370:CDS 45.0%
! GGGAGTTCTTTTGTCCTTGA+AGG - chr3_3:17298888-17298907 Msa0444370:intron 45.0%
TAACGACGAAACTGACGCAC+TGG + chr3_3:17297528-17297547 None:intergenic 50.0%
TAACGACGAAACTGACGCAC+TGG - chr3_3:17297528-17297547 Msa0444370:CDS 50.0%
CCAACACTCACTATTGCAGC+AGG + chr3_3:17298700-17298719 None:intergenic 50.0%
CCTGCTGCAATAGTGAGTGT+TGG - chr3_3:17298697-17298716 Msa0444370:CDS 50.0%
!! GCTGCAATAGTGAGTGTTGG+AGG - chr3_3:17298700-17298719 Msa0444370:CDS 50.0%
!! GCAATAGTGAGTGTTGGAGG+AGG - chr3_3:17298703-17298722 Msa0444370:CDS 50.0%
TAACGACGAAACTGACGCAC+TGG + chr3_3:17297528-17297547 None:intergenic 50.0%
TAACGACGAAACTGACGCAC+TGG - chr3_3:17297528-17297547 Msa0444370:CDS 50.0%
CCAACACTCACTATTGCAGC+AGG + chr3_3:17298700-17298719 None:intergenic 50.0%
CCTGCTGCAATAGTGAGTGT+TGG - chr3_3:17298697-17298716 Msa0444370:CDS 50.0%
!! GCTGCAATAGTGAGTGTTGG+AGG - chr3_3:17298700-17298719 Msa0444370:CDS 50.0%
!! GCAATAGTGAGTGTTGGAGG+AGG - chr3_3:17298703-17298722 Msa0444370:CDS 50.0%
AACACCGGTCTCATCCGTTC+TGG - chr3_3:17297431-17297450 Msa0444370:three_prime_UTR 55.0%
CCAACCAGAACGGATGAGAC+CGG + chr3_3:17297438-17297457 None:intergenic 55.0%
!! GTGAGTGTTGGAGGAGGACA+CGG - chr3_3:17298709-17298728 Msa0444370:CDS 55.0%
AACACCGGTCTCATCCGTTC+TGG - chr3_3:17297431-17297450 Msa0444370:three_prime_UTR 55.0%
CCAACCAGAACGGATGAGAC+CGG + chr3_3:17297438-17297457 None:intergenic 55.0%
!! GTGAGTGTTGGAGGAGGACA+CGG - chr3_3:17298709-17298728 Msa0444370:CDS 55.0%
CCGGTCTCATCCGTTCTGGT+TGG - chr3_3:17297435-17297454 Msa0444370:three_prime_UTR 60.0%
! AGTGTTGGAGGAGGACACGG+TGG - chr3_3:17298712-17298731 Msa0444370:CDS 60.0%
CCGGTCTCATCCGTTCTGGT+TGG - chr3_3:17297435-17297454 Msa0444370:three_prime_UTR 60.0%
! AGTGTTGGAGGAGGACACGG+TGG - chr3_3:17298712-17298731 Msa0444370:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 17297332 17299135 17297332 ID=Msa0444370;Name=Msa0444370
chr3_3 mRNA 17297332 17299135 17297332 ID=Msa0444370-mRNA-1;Parent=Msa0444370;Name=Msa0444370-mRNA-1;_AED=0.28;_eAED=0.28;_QI=42|1|1|1|1|1|3|193|191
chr3_3 exon 17297332 17297829 17297332 ID=Msa0444370-mRNA-1:exon:3694;Parent=Msa0444370-mRNA-1
chr3_3 exon 17298598 17298789 17298598 ID=Msa0444370-mRNA-1:exon:3693;Parent=Msa0444370-mRNA-1
chr3_3 exon 17299015 17299135 17299015 ID=Msa0444370-mRNA-1:exon:3692;Parent=Msa0444370-mRNA-1
chr3_3 five_prime_UTR 17299094 17299135 17299094 ID=Msa0444370-mRNA-1:five_prime_utr;Parent=Msa0444370-mRNA-1
chr3_3 CDS 17299015 17299093 17299015 ID=Msa0444370-mRNA-1:cds;Parent=Msa0444370-mRNA-1
chr3_3 CDS 17298598 17298789 17298598 ID=Msa0444370-mRNA-1:cds;Parent=Msa0444370-mRNA-1
chr3_3 CDS 17297525 17297829 17297525 ID=Msa0444370-mRNA-1:cds;Parent=Msa0444370-mRNA-1
chr3_3 three_prime_UTR 17297332 17297524 17297332 ID=Msa0444370-mRNA-1:three_prime_utr;Parent=Msa0444370-mRNA-1
Gene Sequence

>Msa0444370

ATGGCTGGAGCAATTAAGGTTGTTGCTATCTCTGGTTCTCTTCGAAAAGCTTCTTGCAACACCGGTCTCATCCGTTCTGCTATTGAGCTGAGTAAAAATGTGGTCGAGGGTGTTGATATTGAGTACATTGATATTTCAAATCTGCCAATGTTGAACACTGATCTTGAGACAGAAGGGAATTTTCCAGCTGAAGTTGAAACTTTTCGTCAAAAGATTCTTGAAGCTGATAGTGTTCTCTTTGCTTCTCCTGAATATAATTATTCTGTCTCAGCTCCACTAAAGAATGCAATTGATTGGGCATCAAGACCACCAAATGTTTGGGCTAGAAAGCCTGCTGCAATAGTGAGTGTTGGAGGAGGACACGGTGGTGCAAAGTCACACTACCATCTCCGACAAATTGGAGTTTTCGTCGATCTTCATTTCATCAATAAACCCGAGTTTTTCTTAAACGCGTTTCAGCCTCCAGCAAAATTTAACGGTGATGGCGATTTGATCGATGAAGATGCCAAGAATAATTTGGAGGGAGTTCTTTTGTCCTTGAAGGCATTTACCCTTCAACTTCAAGGCAAAAATTGA
Protein sequence

>Msa0444370

MAGAIKVVAISGSLRKASCNTGLIRSAIELSKNVVEGVDIEYIDISNLPMLNTDLETEGNFPAEVETFRQKILEADSVLFASPEYNYSVSAPLKNAIDWASRPPNVWARKPAAIVSVGGGHGGAKSHYHLRQIGVFVDLHFINKPEFFLNAFQPPAKFNGDGDLIDEDAKNNLEGVLLSLKAFTLQLQGKN*