Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404890 | XP_013459616.1 | 86.166 | 253 | 10 | 1 | 1 | 253 | 1 | 228 | 1.93e-150 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404890 | sp|Q9SS37|RTNLH_ARATH | 50.916 | 273 | 99 | 4 | 1 | 265 | 1 | 246 | 1.02e-94 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404890 | A0A072UVI7 | 86.166 | 253 | 10 | 1 | 1 | 253 | 1 | 228 | 9.21e-151 | 430 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0404890 | Msa0498230 | 0.925886 | 9.980553e-91 | -8.615850e-47 |
| Msa0404890 | Msa0714340 | 0.806977 | 6.329401e-50 | -8.615850e-47 |
| Msa0404890 | Msa0714380 | 0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa0404890 | Msa1187780 | 0.826614 | 2.463590e-54 | -8.615850e-47 |
| Msa0358730 | Msa0404890 | 0.928265 | 3.685671e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404890 | MtrunA17_Chr3g0095441 | 86.166 | 253 | 10 | 1 | 1 | 253 | 1 | 228 | 1.77e-154 | 430 |
| Msa0404890 | MtrunA17_Chr5g0442361 | 59.398 | 266 | 80 | 3 | 1 | 264 | 1 | 240 | 1.34e-100 | 293 |
| Msa0404890 | MtrunA17_Chr8g0387631 | 43.644 | 236 | 104 | 2 | 35 | 266 | 50 | 260 | 7.26e-63 | 198 |
| Msa0404890 | MtrunA17_Chr8g0348131 | 41.423 | 239 | 103 | 2 | 34 | 260 | 53 | 266 | 4.54e-59 | 188 |
| Msa0404890 | MtrunA17_Chr1g0202401 | 40.455 | 220 | 106 | 1 | 37 | 256 | 45 | 239 | 5.84e-52 | 170 |
| Msa0404890 | MtrunA17_Chr8g0376101 | 33.333 | 240 | 127 | 3 | 31 | 264 | 9 | 221 | 5.83e-45 | 151 |
| Msa0404890 | MtrunA17_Chr1g0209261 | 31.140 | 228 | 122 | 4 | 43 | 266 | 10 | 206 | 1.28e-31 | 115 |
| Msa0404890 | MtrunA17_Chr3g0108661 | 29.032 | 248 | 148 | 3 | 5 | 251 | 10 | 230 | 1.18e-28 | 109 |
| Msa0404890 | MtrunA17_Chr4g0005701 | 30.660 | 212 | 122 | 1 | 41 | 252 | 5 | 191 | 9.91e-26 | 100 |
| Msa0404890 | MtrunA17_Chr1g0208091 | 32.367 | 207 | 115 | 2 | 50 | 256 | 9 | 190 | 7.02e-22 | 90.5 |
| Msa0404890 | MtrunA17_Chr5g0402811 | 27.228 | 202 | 122 | 1 | 55 | 256 | 29 | 205 | 6.39e-20 | 85.5 |
| Msa0404890 | MtrunA17_Chr6g0453331 | 28.426 | 197 | 116 | 1 | 60 | 256 | 14 | 185 | 5.06e-17 | 77.0 |
| Msa0404890 | MtrunA17_Chr5g0402701 | 28.743 | 167 | 94 | 1 | 62 | 228 | 344 | 485 | 4.08e-14 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0404890 | AT3G10260.1 | 50.916 | 273 | 99 | 4 | 1 | 265 | 1 | 246 | 1.04e-95 | 281 |
| Msa0404890 | AT3G10260.2 | 50.916 | 273 | 99 | 4 | 1 | 265 | 1 | 246 | 1.04e-95 | 281 |
| Msa0404890 | AT3G10260.3 | 50.916 | 273 | 99 | 4 | 1 | 265 | 21 | 266 | 1.41e-95 | 282 |
| Msa0404890 | AT2G46170.1 | 42.920 | 226 | 104 | 1 | 31 | 256 | 40 | 240 | 1.27e-60 | 192 |
| Msa0404890 | AT1G64090.1 | 40.625 | 224 | 108 | 1 | 33 | 256 | 38 | 236 | 1.45e-57 | 184 |
| Msa0404890 | AT3G61560.1 | 41.150 | 226 | 108 | 1 | 31 | 256 | 40 | 240 | 1.64e-57 | 184 |
| Msa0404890 | AT3G61560.2 | 41.150 | 226 | 108 | 1 | 31 | 256 | 40 | 240 | 1.64e-57 | 184 |
| Msa0404890 | AT1G64090.2 | 37.917 | 240 | 108 | 2 | 33 | 256 | 38 | 252 | 2.03e-53 | 174 |
| Msa0404890 | AT4G11220.1 | 35.931 | 231 | 119 | 2 | 40 | 266 | 66 | 271 | 6.09e-53 | 173 |
| Msa0404890 | AT4G23630.1 | 38.095 | 231 | 114 | 2 | 40 | 266 | 70 | 275 | 3.51e-52 | 171 |
| Msa0404890 | AT4G23630.2 | 38.095 | 231 | 114 | 2 | 40 | 266 | 70 | 275 | 3.51e-52 | 171 |
| Msa0404890 | AT5G41600.1 | 38.532 | 218 | 109 | 1 | 40 | 257 | 49 | 241 | 1.81e-50 | 166 |
| Msa0404890 | AT3G61560.3 | 41.398 | 186 | 84 | 1 | 29 | 214 | 38 | 198 | 1.91e-44 | 149 |
| Msa0404890 | AT2G46170.2 | 46.667 | 150 | 76 | 1 | 31 | 180 | 40 | 185 | 1.85e-43 | 146 |
| Msa0404890 | AT4G01230.2 | 35.398 | 226 | 118 | 2 | 31 | 256 | 42 | 239 | 1.89e-42 | 145 |
| Msa0404890 | AT3G18260.1 | 34.783 | 230 | 121 | 3 | 39 | 264 | 19 | 223 | 7.67e-42 | 143 |
| Msa0404890 | AT4G01230.1 | 34.513 | 226 | 118 | 3 | 31 | 256 | 42 | 237 | 3.74e-39 | 137 |
| Msa0404890 | AT3G10915.4 | 26.872 | 227 | 142 | 1 | 30 | 256 | 12 | 214 | 7.29e-28 | 107 |
| Msa0404890 | AT3G19460.3 | 32.127 | 221 | 135 | 5 | 51 | 259 | 14 | 231 | 1.49e-27 | 106 |
| Msa0404890 | AT3G19460.7 | 32.127 | 221 | 135 | 5 | 51 | 259 | 14 | 231 | 1.49e-27 | 106 |
| Msa0404890 | AT3G10915.2 | 26.432 | 227 | 142 | 1 | 30 | 256 | 12 | 213 | 6.97e-27 | 104 |
| Msa0404890 | AT3G10915.7 | 26.549 | 226 | 141 | 1 | 32 | 257 | 39 | 239 | 1.85e-26 | 103 |
| Msa0404890 | AT2G15280.1 | 27.488 | 211 | 128 | 1 | 47 | 257 | 2 | 187 | 1.91e-25 | 100 |
| Msa0404890 | AT3G19460.2 | 31.604 | 212 | 130 | 5 | 60 | 259 | 7 | 215 | 2.78e-24 | 97.4 |
| Msa0404890 | AT3G19460.6 | 31.604 | 212 | 130 | 5 | 60 | 259 | 7 | 215 | 2.78e-24 | 97.4 |
| Msa0404890 | AT3G19460.1 | 29.665 | 209 | 122 | 1 | 51 | 259 | 14 | 197 | 2.30e-23 | 94.7 |
| Msa0404890 | AT3G19460.5 | 29.665 | 209 | 122 | 1 | 51 | 259 | 14 | 197 | 2.30e-23 | 94.7 |
| Msa0404890 | AT3G19460.4 | 29.665 | 209 | 122 | 1 | 51 | 259 | 14 | 197 | 2.30e-23 | 94.7 |
| Msa0404890 | AT3G10915.5 | 24.621 | 264 | 149 | 3 | 15 | 256 | 1 | 236 | 9.02e-23 | 94.4 |
| Msa0404890 | AT1G68230.2 | 28.959 | 221 | 122 | 4 | 50 | 264 | 22 | 213 | 4.79e-21 | 89.0 |
| Msa0404890 | AT3G10915.6 | 24.020 | 204 | 130 | 1 | 54 | 257 | 4 | 182 | 4.99e-18 | 80.1 |
| Msa0404890 | AT3G10915.3 | 24.121 | 199 | 126 | 1 | 59 | 257 | 8 | 181 | 8.16e-18 | 79.7 |
| Msa0404890 | AT3G54120.1 | 28.111 | 217 | 131 | 2 | 36 | 252 | 1 | 192 | 8.01e-17 | 77.0 |
| Msa0404890 | AT3G10915.1 | 27.273 | 165 | 116 | 1 | 15 | 179 | 1 | 161 | 1.77e-15 | 72.4 |
| Msa0404890 | AT1G68230.1 | 29.762 | 168 | 87 | 3 | 50 | 215 | 22 | 160 | 8.71e-14 | 67.8 |
Find 54 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCCTTATGTAAATTAT+TGG | 0.151012 | 3_2:-38144319 | Msa0404890:three_prime_UTR |
| TAACTGGTGCAACAATTATA+TGG | 0.199383 | 3_2:-38146957 | Msa0404890:CDS |
| AACTTTGTGCTCAAGGTCTT+TGG | 0.269918 | 3_2:-38144419 | Msa0404890:CDS |
| GCCTGCTTGCTCAATTTCTA+TGG | 0.286324 | 3_2:-38146873 | Msa0404890:CDS |
| GGTTAACTCTGGATGATAAA+TGG | 0.287795 | 3_2:+38146532 | None:intergenic |
| ATGTTCACAAATAACTCTTC+TGG | 0.294981 | 3_2:+38146683 | None:intergenic |
| ATGCTTCTAGCATGTTTAAC+AGG | 0.343523 | 3_2:-38146846 | Msa0404890:intron |
| GTGAACATTGCAACTGTAAT+CGG | 0.350430 | 3_2:-38146668 | Msa0404890:CDS |
| CAACCTTGTCGACACATTAT+CGG | 0.356122 | 3_2:-38147256 | Msa0404890:CDS |
| ACAATGCACATGTTTGATAA+AGG | 0.364934 | 3_2:+38146511 | None:intergenic |
| TCCAGGTTGTCGTAAGTTTG+TGG | 0.393138 | 3_2:-38145359 | Msa0404890:intron |
| AACTGGTGCAACAATTATAT+GGG | 0.403050 | 3_2:-38146956 | Msa0404890:CDS |
| CCAGGTTGTCGTAAGTTTGT+GGG | 0.407558 | 3_2:-38145358 | Msa0404890:intron |
| TAAATTATTGGATTGGTTGA+AGG | 0.413047 | 3_2:-38144307 | Msa0404890:three_prime_UTR |
| GTCTTTGATGATGTGCTCTC+TGG | 0.413899 | 3_2:-38147335 | Msa0404890:five_prime_UTR |
| TGTGGGCTGGTTCAGTGATC+GGG | 0.419844 | 3_2:-38145341 | Msa0404890:CDS |
| TGATTTGTCTTCCTCAAAGA+AGG | 0.421270 | 3_2:+38147215 | None:intergenic |
| TGTTCACAAATAACTCTTCT+GGG | 0.437588 | 3_2:+38146684 | None:intergenic |
| TTGTGGGCTGGTTCAGTGAT+CGG | 0.439695 | 3_2:-38145342 | Msa0404890:CDS |
| TTATATGGGTGCTATTTGAA+TGG | 0.444221 | 3_2:-38146942 | Msa0404890:CDS |
| CCTTATGTAAATTATTGGAT+TGG | 0.445715 | 3_2:-38144314 | Msa0404890:three_prime_UTR |
| CTTCAAGATGTTTCTTGTGA+AGG | 0.447481 | 3_2:-38146617 | Msa0404890:CDS |
| TACAAGATCTCTTCTATGAA+TGG | 0.461169 | 3_2:-38144263 | Msa0404890:three_prime_UTR |
| TCATACCTTTCATAGAGAAC+TGG | 0.464929 | 3_2:+38144455 | None:intergenic |
| CCAATCCAATAATTTACATA+AGG | 0.471474 | 3_2:+38144314 | None:intergenic |
| AAATTATTGGATTGGTTGAA+GGG | 0.472743 | 3_2:-38144306 | Msa0404890:three_prime_UTR |
| AACTATAGAAAGCTGGATGC+TGG | 0.477192 | 3_2:-38144383 | Msa0404890:CDS |
| TCCGAGATCAACAGACTGTT+CGG | 0.480198 | 3_2:-38147180 | Msa0404890:CDS |
| CTGGTTCAGTGATCGGGAGT+TGG | 0.488082 | 3_2:-38145335 | Msa0404890:CDS |
| GCAAAATAACTATAGAAAGC+TGG | 0.488536 | 3_2:-38144390 | Msa0404890:CDS |
| GAAAATTTACTATCAATGTA+TGG | 0.495945 | 3_2:+38144122 | None:intergenic |
| TTGGTTGAAGGGAATAAGTA+GGG | 0.505901 | 3_2:-38144295 | Msa0404890:three_prime_UTR |
| TCCGAACAGTCTGTTGATCT+CGG | 0.515369 | 3_2:+38147179 | None:intergenic |
| GTTGTCGTAAGTTTGTGGGC+TGG | 0.521608 | 3_2:-38145354 | Msa0404890:CDS |
| ACCATAGAAATTGAGCAAGC+AGG | 0.524128 | 3_2:+38146872 | None:intergenic |
| CACTTCCAGTTCTCTATGAA+AGG | 0.525840 | 3_2:-38144460 | Msa0404890:CDS |
| CCTCCTAAAAGATGGTGTAC+AGG | 0.528013 | 3_2:+38147147 | None:intergenic |
| TGTTTGATAAAGGTTAACTC+TGG | 0.529195 | 3_2:+38146521 | None:intergenic |
| ATTGGTTGAAGGGAATAAGT+AGG | 0.538389 | 3_2:-38144296 | Msa0404890:three_prime_UTR |
| TGCAACTGTAATCGGAAATG+AGG | 0.543462 | 3_2:-38146660 | Msa0404890:CDS |
| AGTTGACAACTTTGTGCTCA+AGG | 0.544627 | 3_2:-38144426 | Msa0404890:CDS |
| ATGAGGTTAACCGTGGGTTG+AGG | 0.554577 | 3_2:-38146643 | Msa0404890:CDS |
| AGTTCTCTATGAAAGGTATG+AGG | 0.559341 | 3_2:-38144453 | Msa0404890:CDS |
| TGTCGACAAGGTTGTGAAGG+AGG | 0.569674 | 3_2:+38147265 | None:intergenic |
| ATCATTTATGAGAACACAAG+AGG | 0.571876 | 3_2:+38147405 | None:intergenic |
| CTGGATGCTGGTGTGCTCAA+AGG | 0.572299 | 3_2:-38144371 | Msa0404890:CDS |
| ATGTGTCGACAAGGTTGTGA+AGG | 0.609913 | 3_2:+38147262 | None:intergenic |
| ATCGGAAATGAGGTTAACCG+TGG | 0.634795 | 3_2:-38146650 | Msa0404890:CDS |
| GCAACACGAGATACTTGAGA+TGG | 0.643340 | 3_2:+38146710 | None:intergenic |
| TGGTTGAAGGGAATAAGTAG+GGG | 0.650194 | 3_2:-38144294 | Msa0404890:three_prime_UTR |
| CTTGAAGAAACCTCAACCCA+CGG | 0.663353 | 3_2:+38146633 | None:intergenic |
| TCGGAAATGAGGTTAACCGT+GGG | 0.683014 | 3_2:-38146649 | Msa0404890:CDS |
| GGTTGAAGGGAATAAGTAGG+GGG | 0.683484 | 3_2:-38144293 | Msa0404890:three_prime_UTR |
| TGTCCGATAATGTGTCGACA+AGG | 0.693508 | 3_2:+38147253 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTTTATTTTATCTTT+TGG | - | chr3_2:38144476-38144495 | Msa0404890:CDS | 10.0% |
| !!! | AATCAAATTTTTTAATGATC+TGG | + | chr3_2:38145531-38145550 | None:intergenic | 15.0% |
| !!! | GTAGAAATAAATATTTTCTA+AGG | + | chr3_2:38146071-38146090 | None:intergenic | 15.0% |
| !!! | TTTCACTTTTAATTACAAAA+CGG | + | chr3_2:38146719-38146738 | None:intergenic | 15.0% |
| !! | TTTATCCTTATGTAAATTAT+TGG | - | chr3_2:38147200-38147219 | Msa0404890:CDS | 15.0% |
| !!! | AGTAAATTTTCATTTGAAAA+TGG | - | chr3_2:38147409-38147428 | Msa0404890:five_prime_UTR | 15.0% |
| !!! | TTCTCTTGTTTTAATTTATG+TGG | - | chr3_2:38144725-38144744 | Msa0404890:intron | 20.0% |
| !!! | TTCTTTTATGCTTTAAAATG+AGG | + | chr3_2:38145360-38145379 | None:intergenic | 20.0% |
| !!! | TCATTTTAAAGCATAAAAGA+AGG | - | chr3_2:38145359-38145378 | Msa0404890:intron | 20.0% |
| !!! | ATTTAATTTATATACATCGC+CGG | - | chr3_2:38145468-38145487 | Msa0404890:intron | 20.0% |
| !! | TTCTAAATCACACATATAAT+TGG | - | chr3_2:38145565-38145584 | Msa0404890:intron | 20.0% |
| !!! | CAACTAATCTCTTTTTATAT+GGG | + | chr3_2:38145752-38145771 | None:intergenic | 20.0% |
| !! | AATTACTTGTGCAAATATTT+GGG | + | chr3_2:38146304-38146323 | None:intergenic | 20.0% |
| !! | TAATTACTTGTGCAAATATT+TGG | + | chr3_2:38146305-38146324 | None:intergenic | 20.0% |
| !! | TTCTTAAAAAGACATGATTT+CGG | - | chr3_2:38146354-38146373 | Msa0404890:intron | 20.0% |
| !!! | AAACTTTTTTTCTTCAAATG+TGG | - | chr3_2:38146399-38146418 | Msa0404890:intron | 20.0% |
| !!! | TCATCTACAAATATTTTACA+AGG | + | chr3_2:38146657-38146676 | None:intergenic | 20.0% |
| !! | TTGTAATTAAAAGTGAAAAC+TGG | - | chr3_2:38146721-38146740 | Msa0404890:intron | 20.0% |
| !! | GAAAATTTACTATCAATGTA+TGG | + | chr3_2:38147400-38147419 | None:intergenic | 20.0% |
| !!! | TCAAAGAAGGATGATTTTTT+TGG | + | chr3_2:38144294-38144313 | None:intergenic | 25.0% |
| ! | AAAAAAATCATCCTTCTTTG+AGG | - | chr3_2:38144293-38144312 | Msa0404890:three_prime_UTR | 25.0% |
| !!! | ATTTCTGCTAGTTTTTTAAC+TGG | - | chr3_2:38144546-38144565 | Msa0404890:intron | 25.0% |
| ! | AATTGATTAAAAAGCAAGCA+CGG | + | chr3_2:38145037-38145056 | None:intergenic | 25.0% |
| ! | GTTGAAAACTTCAAAAGAAA+AGG | + | chr3_2:38145060-38145079 | None:intergenic | 25.0% |
| ! | ACATGTTATTGATATTGTCA+TGG | - | chr3_2:38145099-38145118 | Msa0404890:intron | 25.0% |
| ! | TTCAACATTCTATCTGTATT+GGG | + | chr3_2:38145674-38145693 | None:intergenic | 25.0% |
| ! | TTTCAACATTCTATCTGTAT+TGG | + | chr3_2:38145675-38145694 | None:intergenic | 25.0% |
| ! | TAGAATGTTGAAAAGAATGT+CGG | - | chr3_2:38145682-38145701 | Msa0404890:intron | 25.0% |
| !! | AATCTCTTTTTATATGGGAT+CGG | + | chr3_2:38145747-38145766 | None:intergenic | 25.0% |
| !! | CCAACTAATCTCTTTTTATA+TGG | + | chr3_2:38145753-38145772 | None:intergenic | 25.0% |
| ! | CCATATAAAAAGAGATTAGT+TGG | - | chr3_2:38145750-38145769 | Msa0404890:intron | 25.0% |
| ! | TTGACACTTAATATTATAGC+AGG | + | chr3_2:38145907-38145926 | None:intergenic | 25.0% |
| ! | TGCTATAATATTAAGTGTCA+AGG | - | chr3_2:38145906-38145925 | Msa0404890:intron | 25.0% |
| !! | GTCAAAAATGATATGTTTTG+TGG | - | chr3_2:38145944-38145963 | Msa0404890:intron | 25.0% |
| !!! | TTTTTGACTGTCATCTATAT+TGG | - | chr3_2:38146213-38146232 | Msa0404890:intron | 25.0% |
| ! | ATTACTTGTGCAAATATTTG+GGG | + | chr3_2:38146303-38146322 | None:intergenic | 25.0% |
| ! | TATTTGCACAAGTAATTAAG+AGG | - | chr3_2:38146307-38146326 | Msa0404890:intron | 25.0% |
| ! | ATTTGCACAAGTAATTAAGA+GGG | - | chr3_2:38146308-38146327 | Msa0404890:intron | 25.0% |
| !!! | ATGTCTTTTTAAGAAATGTG+GGG | + | chr3_2:38146349-38146368 | None:intergenic | 25.0% |
| !!! | CATGTCTTTTTAAGAAATGT+GGG | + | chr3_2:38146350-38146369 | None:intergenic | 25.0% |
| !!! | TCATGTCTTTTTAAGAAATG+TGG | + | chr3_2:38146351-38146370 | None:intergenic | 25.0% |
| ! | AGATGAAATACTATGAAAAC+AGG | - | chr3_2:38146671-38146690 | Msa0404890:CDS | 25.0% |
| ! | TAGCTGAAGCATAAAAATAT+GGG | + | chr3_2:38146777-38146796 | None:intergenic | 25.0% |
| !! | CTATAGTTCAACATATTTTC+AGG | + | chr3_2:38146819-38146838 | None:intergenic | 25.0% |
| ! | TCTAAATTATGAACAAATGC+TGG | - | chr3_2:38146955-38146974 | Msa0404890:CDS | 25.0% |
| ! | CCAATCCAATAATTTACATA+AGG | + | chr3_2:38147208-38147227 | None:intergenic | 25.0% |
| ! | CCTTATGTAAATTATTGGAT+TGG | - | chr3_2:38147205-38147224 | Msa0404890:CDS | 25.0% |
| !!! | TAAATTATTGGATTGGTTGA+AGG | - | chr3_2:38147212-38147231 | Msa0404890:CDS | 25.0% |
| !!! | AAATTATTGGATTGGTTGAA+GGG | - | chr3_2:38147213-38147232 | Msa0404890:CDS | 25.0% |
| ATCATTTATGAGAACACAAG+AGG | + | chr3_2:38144117-38144136 | None:intergenic | 30.0% | |
| ! | TTTTCTGCTGTGATTTTATC+AGG | + | chr3_2:38144234-38144253 | None:intergenic | 30.0% |
| TAACTGGTGCAACAATTATA+TGG | - | chr3_2:38144562-38144581 | Msa0404890:intron | 30.0% | |
| AACTGGTGCAACAATTATAT+GGG | - | chr3_2:38144563-38144582 | Msa0404890:intron | 30.0% | |
| !! | TTATATGGGTGCTATTTGAA+TGG | - | chr3_2:38144577-38144596 | Msa0404890:intron | 30.0% |
| ! | TTCTCTACTATGTTTTGTCT+TGG | - | chr3_2:38144617-38144636 | Msa0404890:intron | 30.0% |
| TGTTCACAAATAACTCTTCT+GGG | + | chr3_2:38144838-38144857 | None:intergenic | 30.0% | |
| ATGTTCACAAATAACTCTTC+TGG | + | chr3_2:38144839-38144858 | None:intergenic | 30.0% | |
| TGTTTGATAAAGGTTAACTC+TGG | + | chr3_2:38145001-38145020 | None:intergenic | 30.0% | |
| ACAATGCACATGTTTGATAA+AGG | + | chr3_2:38145011-38145030 | None:intergenic | 30.0% | |
| !! | TGACCTTTTCTTAGTTGATA+TGG | - | chr3_2:38145134-38145153 | Msa0404890:intron | 30.0% |
| CTACCATATCAACTAAGAAA+AGG | + | chr3_2:38145140-38145159 | None:intergenic | 30.0% | |
| !! | CTTTTCTTAGTTGATATGGT+AGG | - | chr3_2:38145138-38145157 | Msa0404890:intron | 30.0% |
| TTCATAACATCATACTGCAT+AGG | - | chr3_2:38145216-38145235 | Msa0404890:intron | 30.0% | |
| TAACTTCTATATCGCAAAGA+TGG | + | chr3_2:38145269-38145288 | None:intergenic | 30.0% | |
| TGACAAGGATATTGAAAGAT+GGG | + | chr3_2:38145332-38145351 | None:intergenic | 30.0% | |
| TAAAATGAGGAAAAGTGACA+AGG | + | chr3_2:38145347-38145366 | None:intergenic | 30.0% | |
| TTAAAGCATAAAAGAAGGCA+TGG | - | chr3_2:38145364-38145383 | Msa0404890:intron | 30.0% | |
| AAATCCCTTAGTAAATAACC+TGG | + | chr3_2:38145452-38145471 | None:intergenic | 30.0% | |
| AGTGTAAAAAACCTTTACAC+CGG | + | chr3_2:38145490-38145509 | None:intergenic | 30.0% | |
| ! | TGTTAAACGTTTTACACTGA+CGG | - | chr3_2:38145605-38145624 | Msa0404890:intron | 30.0% |
| TCAAAAGATGAAAAGAAAGC+CGG | + | chr3_2:38146244-38146263 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTCATCTTTTGA+TGG | - | chr3_2:38146244-38146263 | Msa0404890:intron | 30.0% |
| !! | TGTCTTTTTAAGAAATGTGG+GGG | + | chr3_2:38146348-38146367 | None:intergenic | 30.0% |
| !!! | TTCTGAAATACTTTTGCAAG+TGG | - | chr3_2:38146424-38146443 | Msa0404890:intron | 30.0% |
| !! | TCTGAAATACTTTTGCAAGT+GGG | - | chr3_2:38146425-38146444 | Msa0404890:intron | 30.0% |
| ! | ATATGCTCTAGTTCATGAAA+TGG | - | chr3_2:38146497-38146516 | Msa0404890:intron | 30.0% |
| ! | ACTGGTCTGCAAAAAATATA+TGG | - | chr3_2:38146598-38146617 | Msa0404890:CDS | 30.0% |
| CTAGCTGAAGCATAAAAATA+TGG | + | chr3_2:38146778-38146797 | None:intergenic | 30.0% | |
| ! | TCAGGAGAAAAGTTTTCATA+GGG | + | chr3_2:38146801-38146820 | None:intergenic | 30.0% |
| ! | TTCAGGAGAAAAGTTTTCAT+AGG | + | chr3_2:38146802-38146821 | None:intergenic | 30.0% |
| TTATCAGAAAGAACTAAACC+AGG | + | chr3_2:38146908-38146927 | None:intergenic | 30.0% | |
| ! | GAAACAAATGTTTTGTCGAA+AGG | - | chr3_2:38147019-38147038 | Msa0404890:intron | 30.0% |
| GCAAAATAACTATAGAAAGC+TGG | - | chr3_2:38147129-38147148 | Msa0404890:intron | 30.0% | |
| TACAAGATCTCTTCTATGAA+TGG | - | chr3_2:38147256-38147275 | Msa0404890:CDS | 30.0% | |
| ! | TGATTTGTCTTCCTCAAAGA+AGG | + | chr3_2:38144307-38144326 | None:intergenic | 35.0% |
| ! | AAACCTGTACACCATCTTTT+AGG | - | chr3_2:38144369-38144388 | Msa0404890:CDS | 35.0% |
| ! | ATTTTCCACCTCCTAAAAGA+TGG | + | chr3_2:38144383-38144402 | None:intergenic | 35.0% |
| TTTAGGAGGTGGAAAATGTA+CGG | - | chr3_2:38144386-38144405 | Msa0404890:CDS | 35.0% | |
| !! | CTATGTTTTGTCTTGGTTCT+TGG | - | chr3_2:38144624-38144643 | Msa0404890:intron | 35.0% |
| ATGCTTCTAGCATGTTTAAC+AGG | - | chr3_2:38144673-38144692 | Msa0404890:intron | 35.0% | |
| GTGAACATTGCAACTGTAAT+CGG | - | chr3_2:38144851-38144870 | Msa0404890:intron | 35.0% | |
| CTTCAAGATGTTTCTTGTGA+AGG | - | chr3_2:38144902-38144921 | Msa0404890:intron | 35.0% | |
| GGTTAACTCTGGATGATAAA+TGG | + | chr3_2:38144990-38145009 | None:intergenic | 35.0% | |
| GGATGTCAGCAGAATAAATA+TGG | + | chr3_2:38145248-38145267 | None:intergenic | 35.0% | |
| GAAGTTACTTAAGAGTCGAT+TGG | - | chr3_2:38145282-38145301 | Msa0404890:intron | 35.0% | |
| ATATTGAAAGATGGGATAGC+TGG | + | chr3_2:38145324-38145343 | None:intergenic | 35.0% | |
| GTGACAAGGATATTGAAAGA+TGG | + | chr3_2:38145333-38145352 | None:intergenic | 35.0% | |
| TTCGTCCAGGTTATTTACTA+AGG | - | chr3_2:38145444-38145463 | Msa0404890:intron | 35.0% | |
| TCGTCCAGGTTATTTACTAA+GGG | - | chr3_2:38145445-38145464 | Msa0404890:intron | 35.0% | |
| ! | CATTATTGTGCAAAGTGTCA+AGG | - | chr3_2:38146007-38146026 | Msa0404890:intron | 35.0% |
| !! | TTTTTAAGAAATGTGGGGGT+GGG | + | chr3_2:38146344-38146363 | None:intergenic | 35.0% |
| AAAAACTGGCATAAGAAAGC+TGG | + | chr3_2:38146624-38146643 | None:intergenic | 35.0% | |
| AAGGACACAGATTGAAAAAC+TGG | + | chr3_2:38146638-38146657 | None:intergenic | 35.0% | |
| ATATGGGTCTCTTTACTTTG+AGG | + | chr3_2:38146761-38146780 | None:intergenic | 35.0% | |
| ATAGTAAGATGCAGAGATGA+AGG | - | chr3_2:38146835-38146854 | Msa0404890:intron | 35.0% | |
| TCATACCTTTCATAGAGAAC+TGG | + | chr3_2:38147067-38147086 | None:intergenic | 35.0% | |
| ! | AGTTCTCTATGAAAGGTATG+AGG | - | chr3_2:38147066-38147085 | Msa0404890:intron | 35.0% |
| ATTGGTTGAAGGGAATAAGT+AGG | - | chr3_2:38147223-38147242 | Msa0404890:CDS | 35.0% | |
| TTGGTTGAAGGGAATAAGTA+GGG | - | chr3_2:38147224-38147243 | Msa0404890:CDS | 35.0% | |
| CAACCTTGTCGACACATTAT+CGG | - | chr3_2:38144263-38144282 | Msa0404890:three_prime_UTR | 40.0% | |
| !! | GGCTTTAAATGCTATAGCTG+CGG | - | chr3_2:38144497-38144516 | Msa0404890:intron | 40.0% |
| ACCATAGAAATTGAGCAAGC+AGG | + | chr3_2:38144650-38144669 | None:intergenic | 40.0% | |
| TGCAACTGTAATCGGAAATG+AGG | - | chr3_2:38144859-38144878 | Msa0404890:intron | 40.0% | |
| TGATTAAAAAGCAAGCACGG+AGG | + | chr3_2:38145034-38145053 | None:intergenic | 40.0% | |
| ! | TCTGCACAGTATTTTGTCGT+AGG | - | chr3_2:38145177-38145196 | Msa0404890:intron | 40.0% |
| ! | AAAGATGGGATAGCTGGTTT+CGG | + | chr3_2:38145318-38145337 | None:intergenic | 40.0% |
| ! | GAAGGCATGGTGTATGTAAA+TGG | - | chr3_2:38145377-38145396 | Msa0404890:intron | 40.0% |
| TATATACATCGCCGGTGTAA+AGG | - | chr3_2:38145476-38145495 | Msa0404890:intron | 40.0% | |
| ATGAGGTCTGCTAATACACT+AGG | - | chr3_2:38145880-38145899 | Msa0404890:intron | 40.0% | |
| ! | GCCTCATTTTGTCACTGTTA+TGG | - | chr3_2:38145971-38145990 | Msa0404890:intron | 40.0% |
| GCCATAACAGTGACAAAATG+AGG | + | chr3_2:38145975-38145994 | None:intergenic | 40.0% | |
| TGAAAGTTGAAACACTCTCC+AGG | - | chr3_2:38146143-38146162 | Msa0404890:intron | 40.0% | |
| GTCATCTATATTGGTGAGTC+CGG | - | chr3_2:38146222-38146241 | Msa0404890:intron | 40.0% | |
| !! | CTTTTTAAGAAATGTGGGGG+TGG | + | chr3_2:38146345-38146364 | None:intergenic | 40.0% |
| GGAAGATTTCCTCCCTATTA+AGG | - | chr3_2:38146446-38146465 | Msa0404890:intron | 40.0% | |
| ATGGGGAAGCAACCTTAATA+GGG | + | chr3_2:38146461-38146480 | None:intergenic | 40.0% | |
| TATGGGGAAGCAACCTTAAT+AGG | + | chr3_2:38146462-38146481 | None:intergenic | 40.0% | |
| ATACTGCTAGTGCTAGGTAT+GGG | + | chr3_2:38146479-38146498 | None:intergenic | 40.0% | |
| TATACTGCTAGTGCTAGGTA+TGG | + | chr3_2:38146480-38146499 | None:intergenic | 40.0% | |
| CAGGAAGCAGATTGAAAACA+AGG | - | chr3_2:38146690-38146709 | Msa0404890:CDS | 40.0% | |
| CACTTCCAGTTCTCTATGAA+AGG | - | chr3_2:38147059-38147078 | Msa0404890:intron | 40.0% | |
| AGTTGACAACTTTGTGCTCA+AGG | - | chr3_2:38147093-38147112 | Msa0404890:intron | 40.0% | |
| AACTTTGTGCTCAAGGTCTT+TGG | - | chr3_2:38147100-38147119 | Msa0404890:intron | 40.0% | |
| AACTATAGAAAGCTGGATGC+TGG | - | chr3_2:38147136-38147155 | Msa0404890:intron | 40.0% | |
| TGGTTGAAGGGAATAAGTAG+GGG | - | chr3_2:38147225-38147244 | Msa0404890:CDS | 40.0% | |
| !! | GTCTTTGATGATGTGCTCTC+TGG | - | chr3_2:38144184-38144203 | Msa0404890:three_prime_UTR | 45.0% |
| ! | ATGTGTCGACAAGGTTGTGA+AGG | + | chr3_2:38144260-38144279 | None:intergenic | 45.0% |
| ! | TGTCCGATAATGTGTCGACA+AGG | + | chr3_2:38144269-38144288 | None:intergenic | 45.0% |
| TCCGAGATCAACAGACTGTT+CGG | - | chr3_2:38144339-38144358 | Msa0404890:exon | 45.0% | |
| TCCGAACAGTCTGTTGATCT+CGG | + | chr3_2:38144343-38144362 | None:intergenic | 45.0% | |
| CCTCCTAAAAGATGGTGTAC+AGG | + | chr3_2:38144375-38144394 | None:intergenic | 45.0% | |
| ! | CCTGTACACCATCTTTTAGG+AGG | - | chr3_2:38144372-38144391 | Msa0404890:CDS | 45.0% |
| !! | GTACACCATCTTTTAGGAGG+TGG | - | chr3_2:38144375-38144394 | Msa0404890:CDS | 45.0% |
| ! | TAGCTGCGGATGTTTTGCTA+TGG | - | chr3_2:38144511-38144530 | Msa0404890:intron | 45.0% |
| GCCTGCTTGCTCAATTTCTA+TGG | - | chr3_2:38144646-38144665 | Msa0404890:intron | 45.0% | |
| GCAACACGAGATACTTGAGA+TGG | + | chr3_2:38144812-38144831 | None:intergenic | 45.0% | |
| ATCGGAAATGAGGTTAACCG+TGG | - | chr3_2:38144869-38144888 | Msa0404890:intron | 45.0% | |
| TCGGAAATGAGGTTAACCGT+GGG | - | chr3_2:38144870-38144889 | Msa0404890:intron | 45.0% | |
| CTTGAAGAAACCTCAACCCA+CGG | + | chr3_2:38144889-38144908 | None:intergenic | 45.0% | |
| ! | TGTGCATAAAGTGTTCGTCC+AGG | - | chr3_2:38145431-38145450 | Msa0404890:intron | 45.0% |
| TCTATGCCTCCACATACGTT+GGG | + | chr3_2:38145830-38145849 | None:intergenic | 45.0% | |
| ! | CAAAGTGTCAAGGACACTCA+AGG | - | chr3_2:38146017-38146036 | Msa0404890:intron | 45.0% |
| TCCAGGTTGTCGTAAGTTTG+TGG | - | chr3_2:38146160-38146179 | Msa0404890:intron | 45.0% | |
| CCAGGTTGTCGTAAGTTTGT+GGG | - | chr3_2:38146161-38146180 | Msa0404890:intron | 45.0% | |
| TACTGCTAGTGCTAGGTATG+GGG | + | chr3_2:38146478-38146497 | None:intergenic | 45.0% | |
| GAGCATATACTGCTAGTGCT+AGG | + | chr3_2:38146485-38146504 | None:intergenic | 45.0% | |
| ACAAGTCGATAACTCTCAGG+GGG | + | chr3_2:38146528-38146547 | None:intergenic | 45.0% | |
| CACAAGTCGATAACTCTCAG+GGG | + | chr3_2:38146529-38146548 | None:intergenic | 45.0% | |
| CCACAAGTCGATAACTCTCA+GGG | + | chr3_2:38146530-38146549 | None:intergenic | 45.0% | |
| ACCACAAGTCGATAACTCTC+AGG | + | chr3_2:38146531-38146550 | None:intergenic | 45.0% | |
| CTTACCTAGAGCCCCAAAAA+GGG | - | chr3_2:38146565-38146584 | Msa0404890:CDS | 45.0% | |
| GGTTGAAGGGAATAAGTAGG+GGG | - | chr3_2:38147226-38147245 | Msa0404890:CDS | 45.0% | |
| TGTCGACAAGGTTGTGAAGG+AGG | + | chr3_2:38144257-38144276 | None:intergenic | 50.0% | |
| !! | CTGCGGATGTTTTGCTATGG+AGG | - | chr3_2:38144514-38144533 | Msa0404890:intron | 50.0% |
| ! | ATGAGGTTAACCGTGGGTTG+AGG | - | chr3_2:38144876-38144895 | Msa0404890:intron | 50.0% |
| ACTAAATCTCACGAGCCAGC+TGG | - | chr3_2:38145799-38145818 | Msa0404890:intron | 50.0% | |
| CTAAATCTCACGAGCCAGCT+GGG | - | chr3_2:38145800-38145819 | Msa0404890:intron | 50.0% | |
| CTCTATGCCTCCACATACGT+TGG | + | chr3_2:38145831-38145850 | None:intergenic | 50.0% | |
| ! | TGGAGGCATAGAGCTTACTC+TGG | - | chr3_2:38145838-38145857 | Msa0404890:intron | 50.0% |
| ! | CTGGTGTGTTGACCTCTGTT+CGG | - | chr3_2:38145857-38145876 | Msa0404890:intron | 50.0% |
| TGTTGACCTCTGTTCGGATG+AGG | - | chr3_2:38145863-38145882 | Msa0404890:intron | 50.0% | |
| CCCACAAACTTACGACAACC+TGG | + | chr3_2:38146164-38146183 | None:intergenic | 50.0% | |
| GTTGTCGTAAGTTTGTGGGC+TGG | - | chr3_2:38146165-38146184 | Msa0404890:intron | 50.0% | |
| !! | TTGTGGGCTGGTTCAGTGAT+CGG | - | chr3_2:38146177-38146196 | Msa0404890:intron | 50.0% |
| GGGAAGCAACCTTAATAGGG+AGG | + | chr3_2:38146458-38146477 | None:intergenic | 50.0% | |
| !! | CCCTGAGAGTTATCGACTTG+TGG | - | chr3_2:38146527-38146546 | Msa0404890:CDS | 50.0% |
| GCTTACCTAGAGCCCCAAAA+AGG | - | chr3_2:38146564-38146583 | Msa0404890:CDS | 50.0% | |
| ! | TTTTTGCAGACCAGTGCTCG+TGG | + | chr3_2:38146593-38146612 | None:intergenic | 50.0% |
| CCAGGCGTGTCTTTGTGAAT+AGG | + | chr3_2:38146890-38146909 | None:intergenic | 50.0% | |
| CCTATTCACAAAGACACGCC+TGG | - | chr3_2:38146887-38146906 | Msa0404890:CDS | 50.0% | |
| AGCAGACCTCATCCGAACAG+AGG | + | chr3_2:38145872-38145891 | None:intergenic | 55.0% | |
| !! | TGTGGGCTGGTTCAGTGATC+GGG | - | chr3_2:38146178-38146197 | Msa0404890:intron | 55.0% |
| CTGGTTCAGTGATCGGGAGT+TGG | - | chr3_2:38146184-38146203 | Msa0404890:intron | 55.0% | |
| ! | TGCTCGTGGCTCCCTTTTTG+GGG | + | chr3_2:38146579-38146598 | None:intergenic | 55.0% |
| ! | GTGCTCGTGGCTCCCTTTTT+GGG | + | chr3_2:38146580-38146599 | None:intergenic | 55.0% |
| ! | AGTGCTCGTGGCTCCCTTTT+TGG | + | chr3_2:38146581-38146600 | None:intergenic | 55.0% |
| AAAAAGGGAGCCACGAGCAC+TGG | - | chr3_2:38146580-38146599 | Msa0404890:CDS | 55.0% | |
| CTGGATGCTGGTGTGCTCAA+AGG | - | chr3_2:38147148-38147167 | Msa0404890:CDS | 55.0% | |
| !!! | GGCTCCCTTTTTGGGGCTCT+AGG | + | chr3_2:38146572-38146591 | None:intergenic | 60.0% |
| ATCTCACGAGCCAGCTGGGC+TGG | - | chr3_2:38145804-38145823 | Msa0404890:intron | 65.0% | |
| ATACGTTGGGCCAGCCCAGC+TGG | + | chr3_2:38145817-38145836 | None:intergenic | 65.0% | |
| !! | CTGGGCTGGCCCAACGTATG+TGG | - | chr3_2:38145818-38145837 | Msa0404890:intron | 65.0% |
| ! | GGCTGGCCCAACGTATGTGG+AGG | - | chr3_2:38145821-38145840 | Msa0404890:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 38144098 | 38147443 | 38144098 | ID=Msa0404890;Name=Msa0404890 |
| chr3_2 | mRNA | 38144098 | 38147443 | 38144098 | ID=Msa0404890-mRNA-1;Parent=Msa0404890;Name=Msa0404890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=110|0.8|0.83|1|0.6|0.5|6|245|266 |
| chr3_2 | exon | 38144098 | 38144500 | 38144098 | ID=Msa0404890-mRNA-1:exon:7588;Parent=Msa0404890-mRNA-1 |
| chr3_2 | exon | 38145307 | 38145376 | 38145307 | ID=Msa0404890-mRNA-1:exon:7587;Parent=Msa0404890-mRNA-1 |
| chr3_2 | exon | 38146520 | 38146736 | 38146520 | ID=Msa0404890-mRNA-1:exon:7586;Parent=Msa0404890-mRNA-1 |
| chr3_2 | exon | 38146847 | 38147027 | 38146847 | ID=Msa0404890-mRNA-1:exon:7585;Parent=Msa0404890-mRNA-1 |
| chr3_2 | exon | 38147139 | 38147356 | 38147139 | ID=Msa0404890-mRNA-1:exon:7584;Parent=Msa0404890-mRNA-1 |
| chr3_2 | exon | 38147377 | 38147443 | 38147377 | ID=Msa0404890-mRNA-1:exon:7583;Parent=Msa0404890-mRNA-1 |
| chr3_2 | five_prime_UTR | 38147377 | 38147443 | 38147377 | ID=Msa0404890-mRNA-1:five_prime_utr;Parent=Msa0404890-mRNA-1 |
| chr3_2 | five_prime_UTR | 38147314 | 38147356 | 38147314 | ID=Msa0404890-mRNA-1:five_prime_utr;Parent=Msa0404890-mRNA-1 |
| chr3_2 | CDS | 38147139 | 38147313 | 38147139 | ID=Msa0404890-mRNA-1:cds;Parent=Msa0404890-mRNA-1 |
| chr3_2 | CDS | 38146847 | 38147027 | 38146847 | ID=Msa0404890-mRNA-1:cds;Parent=Msa0404890-mRNA-1 |
| chr3_2 | CDS | 38146520 | 38146736 | 38146520 | ID=Msa0404890-mRNA-1:cds;Parent=Msa0404890-mRNA-1 |
| chr3_2 | CDS | 38145307 | 38145376 | 38145307 | ID=Msa0404890-mRNA-1:cds;Parent=Msa0404890-mRNA-1 |
| chr3_2 | CDS | 38144343 | 38144500 | 38144343 | ID=Msa0404890-mRNA-1:cds;Parent=Msa0404890-mRNA-1 |
| chr3_2 | three_prime_UTR | 38144098 | 38144342 | 38144098 | ID=Msa0404890-mRNA-1:three_prime_utr;Parent=Msa0404890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
