Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498230 | XP_013459616.1 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 8.27e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498230 | sp|Q9SS37|RTNLH_ARATH | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.52e-102 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498230 | A0A072UVI7 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 3.95e-157 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0222340 | Msa0498230 | 0.817343 | 3.463202e-52 | -8.615850e-47 |
| Msa0388840 | Msa0498230 | 0.812779 | 3.570170e-51 | -8.615850e-47 |
| Msa0404890 | Msa0498230 | 0.925886 | 9.980553e-91 | -8.615850e-47 |
| Msa0358730 | Msa0498230 | 0.998111 | 2.065443e-256 | -8.615850e-47 |
| Msa0498230 | Msa0568240 | 0.804742 | 1.866219e-49 | -8.615850e-47 |
| Msa0498230 | Msa0631990 | 0.805284 | 1.437728e-49 | -8.615850e-47 |
| Msa0498230 | Msa0678820 | 0.806848 | 6.739387e-50 | -8.615850e-47 |
| Msa0498230 | Msa0714340 | 0.832889 | 7.305734e-56 | -8.615850e-47 |
| Msa0498230 | Msa0714380 | 0.837259 | 5.775480e-57 | -8.615850e-47 |
| Msa0498230 | Msa0756310 | 0.836204 | 1.073265e-56 | -8.615850e-47 |
| Msa0498230 | Msa0798860 | 0.817422 | 3.325810e-52 | -8.615850e-47 |
| Msa0498230 | Msa0807050 | 0.802988 | 4.319400e-49 | -8.615850e-47 |
| Msa0498230 | Msa0832990 | 0.803356 | 3.625143e-49 | -8.615850e-47 |
| Msa0498230 | Msa0835730 | 0.837808 | 4.176443e-57 | -8.615850e-47 |
| Msa0498230 | Msa0878880 | 0.811582 | 6.513145e-51 | -8.615850e-47 |
| Msa0498230 | Msa1118750 | 0.803789 | 2.947333e-49 | -8.615850e-47 |
| Msa0498230 | Msa1132950 | 0.807375 | 5.212834e-50 | -8.615850e-47 |
| Msa0498230 | Msa1143270 | 0.830929 | 2.226089e-55 | -8.615850e-47 |
| Msa0498230 | Msa1187780 | 0.829505 | 4.959251e-55 | -8.615850e-47 |
| Msa0498230 | Msa1208810 | 0.805961 | 1.036887e-49 | -8.615850e-47 |
| Msa0498230 | Msa1217810 | 0.804823 | 1.795370e-49 | -8.615850e-47 |
| Msa0498230 | Msa1252070 | 0.815165 | 1.063280e-51 | -8.615850e-47 |
| Msa0498230 | Msa1279210 | 0.800612 | 1.328452e-48 | -8.615850e-47 |
| Msa0498230 | Msa1292730 | 0.830244 | 3.275284e-55 | -8.615850e-47 |
| Msa0498230 | Msa1328700 | 0.807240 | 5.567198e-50 | -8.615850e-47 |
| Msa0498230 | Msa1376760 | 0.806497 | 7.993347e-50 | -8.615850e-47 |
| Msa0498230 | Msa1396090 | 0.827456 | 1.549263e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498230 | MtrunA17_Chr3g0095441 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 7.60e-161 | 444 |
| Msa0498230 | MtrunA17_Chr5g0442361 | 65.560 | 241 | 80 | 2 | 1 | 239 | 1 | 240 | 6.04e-107 | 308 |
| Msa0498230 | MtrunA17_Chr8g0387631 | 48.858 | 219 | 106 | 2 | 29 | 241 | 42 | 260 | 1.05e-69 | 214 |
| Msa0498230 | MtrunA17_Chr8g0348131 | 46.698 | 212 | 101 | 1 | 36 | 235 | 55 | 266 | 1.73e-65 | 204 |
| Msa0498230 | MtrunA17_Chr1g0202401 | 46.154 | 195 | 105 | 0 | 37 | 231 | 45 | 239 | 3.85e-59 | 187 |
| Msa0498230 | MtrunA17_Chr8g0376101 | 36.620 | 213 | 131 | 1 | 31 | 239 | 9 | 221 | 7.22e-50 | 162 |
| Msa0498230 | MtrunA17_Chr1g0209261 | 34.597 | 211 | 128 | 3 | 35 | 241 | 2 | 206 | 2.22e-38 | 132 |
| Msa0498230 | MtrunA17_Chr3g0108661 | 31.390 | 223 | 150 | 2 | 5 | 226 | 10 | 230 | 1.09e-32 | 119 |
| Msa0498230 | MtrunA17_Chr4g0005701 | 35.294 | 187 | 121 | 0 | 41 | 227 | 5 | 191 | 9.19e-32 | 115 |
| Msa0498230 | MtrunA17_Chr1g0208091 | 36.813 | 182 | 115 | 0 | 50 | 231 | 9 | 190 | 6.57e-26 | 100 |
| Msa0498230 | MtrunA17_Chr5g0402811 | 31.073 | 177 | 122 | 0 | 55 | 231 | 29 | 205 | 3.60e-25 | 99.0 |
| Msa0498230 | MtrunA17_Chr6g0453331 | 33.140 | 172 | 115 | 0 | 60 | 231 | 14 | 185 | 2.30e-23 | 93.6 |
| Msa0498230 | MtrunA17_Chr5g0402701 | 33.099 | 142 | 95 | 0 | 62 | 203 | 344 | 485 | 1.28e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0498230 | AT3G10260.1 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.58e-103 | 299 |
| Msa0498230 | AT3G10260.2 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.58e-103 | 299 |
| Msa0498230 | AT3G10260.3 | 56.452 | 248 | 98 | 3 | 1 | 240 | 21 | 266 | 6.25e-103 | 300 |
| Msa0498230 | AT2G46170.1 | 48.756 | 201 | 103 | 0 | 31 | 231 | 40 | 240 | 2.69e-67 | 208 |
| Msa0498230 | AT3G61560.1 | 47.959 | 196 | 102 | 0 | 36 | 231 | 45 | 240 | 1.77e-64 | 201 |
| Msa0498230 | AT3G61560.2 | 47.959 | 196 | 102 | 0 | 36 | 231 | 45 | 240 | 1.77e-64 | 201 |
| Msa0498230 | AT1G64090.1 | 45.729 | 199 | 108 | 0 | 33 | 231 | 38 | 236 | 5.07e-64 | 200 |
| Msa0498230 | AT1G64090.2 | 42.326 | 215 | 108 | 1 | 33 | 231 | 38 | 252 | 4.91e-60 | 191 |
| Msa0498230 | AT4G11220.1 | 40.777 | 206 | 118 | 1 | 40 | 241 | 66 | 271 | 8.44e-60 | 190 |
| Msa0498230 | AT4G23630.1 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.43e-59 | 188 |
| Msa0498230 | AT4G23630.2 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.43e-59 | 188 |
| Msa0498230 | AT5G41600.1 | 44.041 | 193 | 108 | 0 | 40 | 232 | 49 | 241 | 1.37e-57 | 184 |
| Msa0498230 | AT3G61560.3 | 49.057 | 159 | 81 | 0 | 31 | 189 | 40 | 198 | 3.39e-51 | 166 |
| Msa0498230 | AT4G01230.2 | 40.299 | 201 | 117 | 1 | 31 | 231 | 42 | 239 | 5.33e-49 | 161 |
| Msa0498230 | AT3G18260.1 | 38.537 | 205 | 122 | 1 | 39 | 239 | 19 | 223 | 1.54e-48 | 159 |
| Msa0498230 | AT4G01230.1 | 39.303 | 201 | 117 | 2 | 31 | 231 | 42 | 237 | 1.16e-45 | 152 |
| Msa0498230 | AT2G46170.2 | 48.905 | 137 | 70 | 0 | 31 | 167 | 40 | 176 | 5.66e-43 | 144 |
| Msa0498230 | AT3G10915.2 | 29.954 | 217 | 148 | 1 | 15 | 231 | 1 | 213 | 8.65e-34 | 122 |
| Msa0498230 | AT3G10915.7 | 31.122 | 196 | 135 | 0 | 37 | 232 | 44 | 239 | 1.71e-33 | 121 |
| Msa0498230 | AT3G10915.4 | 29.817 | 218 | 148 | 2 | 15 | 231 | 1 | 214 | 4.44e-32 | 117 |
| Msa0498230 | AT2G15280.1 | 31.720 | 186 | 127 | 0 | 47 | 232 | 2 | 187 | 8.98e-32 | 115 |
| Msa0498230 | AT3G19460.1 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.86e-29 | 108 |
| Msa0498230 | AT3G19460.5 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.86e-29 | 108 |
| Msa0498230 | AT3G19460.4 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.86e-29 | 108 |
| Msa0498230 | AT3G10915.5 | 27.083 | 240 | 148 | 3 | 15 | 231 | 1 | 236 | 9.29e-27 | 103 |
| Msa0498230 | AT1G68230.2 | 33.696 | 184 | 116 | 2 | 50 | 231 | 22 | 201 | 3.52e-26 | 101 |
| Msa0498230 | AT3G10915.6 | 27.933 | 179 | 129 | 0 | 54 | 232 | 4 | 182 | 9.11e-25 | 97.4 |
| Msa0498230 | AT3G10915.3 | 28.161 | 174 | 125 | 0 | 59 | 232 | 8 | 181 | 1.45e-24 | 97.1 |
| Msa0498230 | AT3G54120.1 | 31.250 | 192 | 132 | 0 | 36 | 227 | 1 | 192 | 4.43e-23 | 93.2 |
| Msa0498230 | AT3G19460.3 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 3.19e-22 | 91.7 |
| Msa0498230 | AT3G19460.7 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 3.19e-22 | 91.7 |
| Msa0498230 | AT3G19460.2 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 5.40e-19 | 82.8 |
| Msa0498230 | AT3G19460.6 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 5.40e-19 | 82.8 |
| Msa0498230 | AT1G68230.1 | 34.965 | 143 | 87 | 2 | 50 | 190 | 22 | 160 | 9.33e-19 | 80.9 |
| Msa0498230 | AT3G10915.1 | 28.571 | 154 | 106 | 1 | 15 | 168 | 1 | 150 | 4.40e-17 | 76.3 |
| Msa0498230 | AT2G23640.1 | 24.294 | 177 | 134 | 0 | 61 | 237 | 18 | 194 | 1.64e-14 | 70.5 |
| Msa0498230 | AT2G15280.2 | 27.586 | 116 | 84 | 0 | 47 | 162 | 2 | 117 | 5.91e-12 | 62.4 |
Find 54 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCCTTATGTAAATTAT+TGG | 0.151012 | 3_4:-34000629 | Msa0498230:three_prime_UTR |
| TAACTGGTGCAACAATTATA+TGG | 0.199383 | 3_4:-34003262 | Msa0498230:CDS |
| AACTTTGTGCTCAAGGTCTT+TGG | 0.269918 | 3_4:-34000729 | Msa0498230:CDS |
| GCCTGCTTGCTCAATTTCTA+TGG | 0.286324 | 3_4:-34003178 | Msa0498230:CDS |
| ATGTTCACAAATAACTCTTC+TGG | 0.294981 | 3_4:+34002988 | None:intergenic |
| GGAAGTACAGAGAACGAAAA+TGG | 0.334230 | 3_4:+34005482 | None:intergenic |
| ATGCTTCTAGCATGTTTAAC+AGG | 0.343523 | 3_4:-34003151 | Msa0498230:intron |
| GTGAACATTGCAACTGTAAT+CGG | 0.350430 | 3_4:-34002973 | Msa0498230:CDS |
| CAACCTTGTCGACACATTAT+CGG | 0.356122 | 3_4:-34003561 | Msa0498230:CDS |
| TCCAGGTTGTCGTAAGTTTG+TGG | 0.393138 | 3_4:-34001664 | Msa0498230:intron |
| AACTGGTGCAACAATTATAT+GGG | 0.403050 | 3_4:-34003261 | Msa0498230:CDS |
| CTCTCTCTCTGCTTAGTCTC+TGG | 0.405745 | 3_4:-34005444 | Msa0498230:intron |
| CCAGGTTGTCGTAAGTTTGT+GGG | 0.407558 | 3_4:-34001663 | Msa0498230:intron |
| TAAATTATTGGATTGGTTGA+AGG | 0.413047 | 3_4:-34000617 | Msa0498230:three_prime_UTR |
| TGTGGGCTGGTTCAGTGATC+GGG | 0.419844 | 3_4:-34001646 | Msa0498230:CDS |
| TGATTTGTCTTCCTCAAAGA+AGG | 0.421270 | 3_4:+34003520 | None:intergenic |
| TGTTCACAAATAACTCTTCT+GGG | 0.437588 | 3_4:+34002989 | None:intergenic |
| TTGTGGGCTGGTTCAGTGAT+CGG | 0.439695 | 3_4:-34001647 | Msa0498230:CDS |
| TTATATGGGTGCTATTTGAA+TGG | 0.444221 | 3_4:-34003247 | Msa0498230:CDS |
| CCTTATGTAAATTATTGGAT+TGG | 0.445715 | 3_4:-34000624 | Msa0498230:three_prime_UTR |
| CTTCAAGATGTTTCTTGTGA+AGG | 0.447481 | 3_4:-34002922 | Msa0498230:CDS |
| TACAAGATCTCTTCTATGAA+TGG | 0.461169 | 3_4:-34000573 | Msa0498230:three_prime_UTR |
| TCATACCTTTCATAGAGAAC+TGG | 0.464929 | 3_4:+34000765 | None:intergenic |
| CCAATCCAATAATTTACATA+AGG | 0.471474 | 3_4:+34000624 | None:intergenic |
| AAATTATTGGATTGGTTGAA+GGG | 0.472743 | 3_4:-34000616 | Msa0498230:three_prime_UTR |
| AACATGTGGTTAGGTATGAT+TGG | 0.473818 | 3_4:-34005583 | None:intergenic |
| AACTATAGAAAGCTGGATGC+TGG | 0.477192 | 3_4:-34000693 | Msa0498230:CDS |
| TCCGAGATCAACAGACTGTT+CGG | 0.480198 | 3_4:-34003485 | Msa0498230:CDS |
| CTGGTTCAGTGATCGGGAGT+TGG | 0.488082 | 3_4:-34001640 | Msa0498230:CDS |
| GCAAAATAACTATAGAAAGC+TGG | 0.488536 | 3_4:-34000700 | Msa0498230:CDS |
| TGAATGAGAAACATGTGGTT+AGG | 0.500499 | 3_4:-34005592 | None:intergenic |
| TTGGTTGAAGGGAATAAGTA+GGG | 0.505901 | 3_4:-34000605 | Msa0498230:three_prime_UTR |
| TCCGAACAGTCTGTTGATCT+CGG | 0.515369 | 3_4:+34003484 | None:intergenic |
| CTGTTGATCTCGGAGCTCAC+TGG | 0.516835 | 3_4:+34003494 | None:intergenic |
| GTTGTCGTAAGTTTGTGGGC+TGG | 0.521608 | 3_4:-34001659 | Msa0498230:CDS |
| ACCATAGAAATTGAGCAAGC+AGG | 0.524128 | 3_4:+34003177 | None:intergenic |
| CACTTCCAGTTCTCTATGAA+AGG | 0.525840 | 3_4:-34000770 | Msa0498230:CDS |
| CCTCCTAAAAGATGGTGTAC+AGG | 0.528013 | 3_4:+34003452 | None:intergenic |
| ATTGGTTGAAGGGAATAAGT+AGG | 0.538389 | 3_4:-34000606 | Msa0498230:three_prime_UTR |
| TGCAACTGTAATCGGAAATG+AGG | 0.543462 | 3_4:-34002965 | Msa0498230:CDS |
| AGTTGACAACTTTGTGCTCA+AGG | 0.544627 | 3_4:-34000736 | Msa0498230:CDS |
| ATGAGGTTAACCGTGGGTTG+AGG | 0.554577 | 3_4:-34002948 | Msa0498230:CDS |
| AGTTCTCTATGAAAGGTATG+AGG | 0.559341 | 3_4:-34000763 | Msa0498230:CDS |
| TGTCGACAAGGTTGTGAAGG+AGG | 0.569674 | 3_4:+34003570 | None:intergenic |
| CTGGATGCTGGTGTGCTCAA+AGG | 0.572299 | 3_4:-34000681 | Msa0498230:CDS |
| ATGTGTCGACAAGGTTGTGA+AGG | 0.609913 | 3_4:+34003567 | None:intergenic |
| GCAACACGAGGTACTTGAGA+TGG | 0.628239 | 3_4:+34003015 | None:intergenic |
| ATCGGAAATGAGGTTAACCG+TGG | 0.634795 | 3_4:-34002955 | Msa0498230:CDS |
| TGGTTGAAGGGAATAAGTAG+GGG | 0.650194 | 3_4:-34000604 | Msa0498230:three_prime_UTR |
| CTTGAAGAAACCTCAACCCA+CGG | 0.663353 | 3_4:+34002938 | None:intergenic |
| TCGGAAATGAGGTTAACCGT+GGG | 0.683014 | 3_4:-34002954 | Msa0498230:CDS |
| GGTTGAAGGGAATAAGTAGG+GGG | 0.683484 | 3_4:-34000603 | Msa0498230:three_prime_UTR |
| TGTCCGATAATGTGTCGACA+AGG | 0.693508 | 3_4:+34003558 | None:intergenic |
| TCTTCTGGGACAGCAACACG+AGG | 0.706178 | 3_4:+34003003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAGATTTCTA+TGG | - | chr3_4:34000880-34000899 | Msa0498230:intron | 10.0% |
| !!! | TTTTTTTTTATGTATGATTA+TGG | - | chr3_4:34001063-34001082 | Msa0498230:intron | 10.0% |
| !!! | TTTCTTTTTATTTTATCTTT+TGG | - | chr3_4:34002638-34002657 | Msa0498230:intron | 10.0% |
| !!! | ATTTTGCTTATATTTTGAAA+CGG | - | chr3_4:34001016-34001035 | Msa0498230:intron | 15.0% |
| !!! | AATCAAATTTTTTAATGATC+TGG | + | chr3_4:34003693-34003712 | None:intergenic | 15.0% |
| !!! | GTAGAAATAAATATTTTCTA+AGG | + | chr3_4:34004233-34004252 | None:intergenic | 15.0% |
| !! | TTTATCCTTATGTAAATTAT+TGG | - | chr3_4:34005357-34005376 | Msa0498230:intron | 15.0% |
| !!! | AGTAAATTTTCATTTGAAAA+TGG | - | chr3_4:34005566-34005585 | Msa0498230:five_prime_UTR | 15.0% |
| !!! | TATCATATCTTTGTTATTCA+TGG | - | chr3_4:34000603-34000622 | Msa0498230:three_prime_UTR | 20.0% |
| !!! | TTTATACAGTGAAATGTTTT+TGG | - | chr3_4:34000687-34000706 | Msa0498230:CDS | 20.0% |
| !!! | TGTTTGCTTATATTTTGAAA+CGG | + | chr3_4:34000941-34000960 | None:intergenic | 20.0% |
| !!! | CTTTAATTTAATGATGTATG+TGG | + | chr3_4:34000993-34001012 | None:intergenic | 20.0% |
| !! | TATCTATTTATCCATGTATT+TGG | - | chr3_4:34001112-34001131 | Msa0498230:intron | 20.0% |
| !! | AAAGAATATATCCAAATACA+TGG | + | chr3_4:34001126-34001145 | None:intergenic | 20.0% |
| !!! | TTTTTTGCCTTTTGTTTTTT+TGG | - | chr3_4:34001364-34001383 | Msa0498230:intron | 20.0% |
| !!! | TTAGTGCTATGATTTTTTAA+TGG | - | chr3_4:34001535-34001554 | Msa0498230:intron | 20.0% |
| !! | AATGCAAGTTAAAATTAATC+AGG | + | chr3_4:34001772-34001791 | None:intergenic | 20.0% |
| !!! | TCCTATTTTTTTGTACTTTT+CGG | - | chr3_4:34001812-34001831 | Msa0498230:intron | 20.0% |
| !! | CAAATTTATCAAGTTTATCA+GGG | + | chr3_4:34002128-34002147 | None:intergenic | 20.0% |
| !! | TCAAATTTATCAAGTTTATC+AGG | + | chr3_4:34002129-34002148 | None:intergenic | 20.0% |
| !!! | TTCTCTTGTTTTAATTTATG+TGG | - | chr3_4:34002887-34002906 | Msa0498230:intron | 20.0% |
| !! | GTTGAAAATTTCAAAAGAAA+AGG | + | chr3_4:34003222-34003241 | None:intergenic | 20.0% |
| !!! | TTCTTTTATGCTTTAAAATG+AGG | + | chr3_4:34003522-34003541 | None:intergenic | 20.0% |
| !!! | TCATTTTAAAGCATAAAAGA+AGG | - | chr3_4:34003521-34003540 | Msa0498230:CDS | 20.0% |
| !!! | ATTTAATTTATATACATCGC+CGG | - | chr3_4:34003630-34003649 | Msa0498230:intron | 20.0% |
| !! | TTCTAAATCACACATATAAT+TGG | - | chr3_4:34003727-34003746 | Msa0498230:intron | 20.0% |
| !!! | CAACTAATCTCTTTTTATAT+GGG | + | chr3_4:34003914-34003933 | None:intergenic | 20.0% |
| !! | AATTACATGTGCAAATATTT+GGG | + | chr3_4:34004466-34004485 | None:intergenic | 20.0% |
| !! | TAATTACATGTGCAAATATT+TGG | + | chr3_4:34004467-34004486 | None:intergenic | 20.0% |
| !! | TTCTTAAAAAGACATGATTT+CGG | - | chr3_4:34004516-34004535 | Msa0498230:intron | 20.0% |
| !!! | AAACTTTTTTTCTTCAAATG+TGG | - | chr3_4:34004561-34004580 | Msa0498230:intron | 20.0% |
| !!! | TCATCTACAAATATTTTACA+AGG | + | chr3_4:34004819-34004838 | None:intergenic | 20.0% |
| !!! | CTTCACTTTTAATTACAAAA+CGG | + | chr3_4:34004881-34004900 | None:intergenic | 20.0% |
| ! | ACGAAAATGGAAAAATGAAT+GGG | + | chr3_4:34000494-34000513 | None:intergenic | 25.0% |
| ! | AACGAAAATGGAAAAATGAA+TGG | + | chr3_4:34000495-34000514 | None:intergenic | 25.0% |
| ! | TAAGCAAACTAAATGAACAA+AGG | + | chr3_4:34000637-34000656 | None:intergenic | 25.0% |
| !!! | TGTTCATTTAGTTTGCTTAT+TGG | - | chr3_4:34000638-34000657 | Msa0498230:exon | 25.0% |
| !!! | GTTCATTTAGTTTGCTTATT+GGG | - | chr3_4:34000639-34000658 | Msa0498230:exon | 25.0% |
| !!! | GATTATTTTGTTGTGTTAAC+CGG | - | chr3_4:34000709-34000728 | Msa0498230:CDS | 25.0% |
| !!! | ATTATTTTGTTGTGTTAACC+GGG | - | chr3_4:34000710-34000729 | Msa0498230:CDS | 25.0% |
| ! | GGATATATTCTTTATTGTGT+TGG | - | chr3_4:34001133-34001152 | Msa0498230:intron | 25.0% |
| !!! | TTCTTTATTGTGTTGGTTTT+TGG | - | chr3_4:34001140-34001159 | Msa0498230:intron | 25.0% |
| ! | CAATGCCTAAAAAATATGTA+TGG | + | chr3_4:34001433-34001452 | None:intergenic | 25.0% |
| !! | TATAATTGACTTATCCTCTT+GGG | - | chr3_4:34001704-34001723 | Msa0498230:intron | 25.0% |
| !!! | TTAATGTTTTATGGTTAGCT+AGG | - | chr3_4:34001730-34001749 | Msa0498230:intron | 25.0% |
| !!! | ATTTTAACTTGCATTTGATC+TGG | - | chr3_4:34001777-34001796 | Msa0498230:intron | 25.0% |
| !! | GAAAAGTACAAAAAAATAGG+AGG | + | chr3_4:34001813-34001832 | None:intergenic | 25.0% |
| !! | ACCGAAAAGTACAAAAAAAT+AGG | + | chr3_4:34001816-34001835 | None:intergenic | 25.0% |
| !!! | TCAAAGAAGGATGATTTTTT+TGG | + | chr3_4:34002456-34002475 | None:intergenic | 25.0% |
| ! | AAAAAAATCATCCTTCTTTG+AGG | - | chr3_4:34002455-34002474 | Msa0498230:intron | 25.0% |
| !!! | ATTTCTGCTAGTTTTTTAAC+TGG | - | chr3_4:34002708-34002727 | Msa0498230:intron | 25.0% |
| ! | AATTGATTAAAAAGCAAGCA+CGG | + | chr3_4:34003199-34003218 | None:intergenic | 25.0% |
| ! | ACATGTTATTGATATTGTCA+TGG | - | chr3_4:34003261-34003280 | Msa0498230:CDS | 25.0% |
| ! | TTCAACATTCTATCTGTATT+GGG | + | chr3_4:34003836-34003855 | None:intergenic | 25.0% |
| ! | TTTCAACATTCTATCTGTAT+TGG | + | chr3_4:34003837-34003856 | None:intergenic | 25.0% |
| ! | TAGAATGTTGAAAAGAATGT+CGG | - | chr3_4:34003844-34003863 | Msa0498230:intron | 25.0% |
| !! | AATCTCTTTTTATATGGGAT+CGG | + | chr3_4:34003909-34003928 | None:intergenic | 25.0% |
| !! | CCAACTAATCTCTTTTTATA+TGG | + | chr3_4:34003915-34003934 | None:intergenic | 25.0% |
| ! | CCATATAAAAAGAGATTAGT+TGG | - | chr3_4:34003912-34003931 | Msa0498230:intron | 25.0% |
| ! | TTGACACTTAATATTATAGC+AGG | + | chr3_4:34004069-34004088 | None:intergenic | 25.0% |
| ! | TGCTATAATATTAAGTGTCA+AGG | - | chr3_4:34004068-34004087 | Msa0498230:intron | 25.0% |
| !! | GTCAAAAATGATATGTTTTG+TGG | - | chr3_4:34004106-34004125 | Msa0498230:intron | 25.0% |
| !!! | TTTTTGACTGTCATCTATAT+TGG | - | chr3_4:34004375-34004394 | Msa0498230:intron | 25.0% |
| ! | ATTACATGTGCAAATATTTG+GGG | + | chr3_4:34004465-34004484 | None:intergenic | 25.0% |
| ! | TATTTGCACATGTAATTAAG+AGG | - | chr3_4:34004469-34004488 | Msa0498230:intron | 25.0% |
| ! | ATTTGCACATGTAATTAAGA+GGG | - | chr3_4:34004470-34004489 | Msa0498230:intron | 25.0% |
| !!! | ATGTCTTTTTAAGAAATGTG+GGG | + | chr3_4:34004511-34004530 | None:intergenic | 25.0% |
| !!! | CATGTCTTTTTAAGAAATGT+GGG | + | chr3_4:34004512-34004531 | None:intergenic | 25.0% |
| !!! | TCATGTCTTTTTAAGAAATG+TGG | + | chr3_4:34004513-34004532 | None:intergenic | 25.0% |
| ! | AGATGAAATACTATGAAAAC+AGG | - | chr3_4:34004833-34004852 | Msa0498230:intron | 25.0% |
| ! | TTGTAATTAAAAGTGAAGAC+TGG | - | chr3_4:34004883-34004902 | Msa0498230:intron | 25.0% |
| ! | TAGCTGAAGCATAAAAATAT+GGG | + | chr3_4:34004939-34004958 | None:intergenic | 25.0% |
| !! | CTATAGTTCAACATATTTTC+AGG | + | chr3_4:34004981-34005000 | None:intergenic | 25.0% |
| ! | TCTAAATTATGAACAAATGC+TGG | - | chr3_4:34005117-34005136 | Msa0498230:intron | 25.0% |
| ! | CCAATCCAATAATTTACATA+AGG | + | chr3_4:34005365-34005384 | None:intergenic | 25.0% |
| ! | CCTTATGTAAATTATTGGAT+TGG | - | chr3_4:34005362-34005381 | Msa0498230:intron | 25.0% |
| !!! | TAAATTATTGGATTGGTTGA+AGG | - | chr3_4:34005369-34005388 | Msa0498230:intron | 25.0% |
| !!! | AAATTATTGGATTGGTTGAA+GGG | - | chr3_4:34005370-34005389 | Msa0498230:intron | 25.0% |
| AATGGAAAAATGAATGGGAT+TGG | + | chr3_4:34000489-34000508 | None:intergenic | 30.0% | |
| ATTGGGTTTCATTTATTTCC+TGG | - | chr3_4:34000656-34000675 | Msa0498230:CDS | 30.0% | |
| TTGGGTTTCATTTATTTCCT+GGG | - | chr3_4:34000657-34000676 | Msa0498230:CDS | 30.0% | |
| !! | TTGTCCTTTTGATTGATTGA+TGG | - | chr3_4:34000816-34000835 | Msa0498230:intron | 30.0% |
| AGGAAAAGCAAAAAGGAAAA+AGG | + | chr3_4:34000908-34000927 | None:intergenic | 30.0% | |
| GAGTAATAGGAAAAGCAAAA+AGG | + | chr3_4:34000915-34000934 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATAATA+TGG | + | chr3_4:34000981-34001000 | None:intergenic | 30.0% | |
| !!! | TTGCTTATATTTTGAAACGG+TGG | - | chr3_4:34001019-34001038 | Msa0498230:intron | 30.0% |
| !!! | TGCTTATATTTTGAAACGGT+GGG | - | chr3_4:34001020-34001039 | Msa0498230:intron | 30.0% |
| AATTGACTAAGTGTGTGTTT+GGG | - | chr3_4:34001185-34001204 | Msa0498230:intron | 30.0% | |
| !! | GCTTTTCTTTTTTTCACGTT+GGG | + | chr3_4:34001248-34001267 | None:intergenic | 30.0% |
| !! | AGCTTTTCTTTTTTTCACGT+TGG | + | chr3_4:34001249-34001268 | None:intergenic | 30.0% |
| ! | CATTAGAAAGAAAGTACGTT+TGG | - | chr3_4:34001280-34001299 | Msa0498230:intron | 30.0% |
| !!! | TTTGCCTTTTGTTTTTTTGG+TGG | - | chr3_4:34001367-34001386 | Msa0498230:intron | 30.0% |
| TAAAAAATATGTATGGTCCG+GGG | + | chr3_4:34001426-34001445 | None:intergenic | 30.0% | |
| CTAAAAAATATGTATGGTCC+GGG | + | chr3_4:34001427-34001446 | None:intergenic | 30.0% | |
| CCTAAAAAATATGTATGGTC+CGG | + | chr3_4:34001428-34001447 | None:intergenic | 30.0% | |
| CCTTCAATTGATATCACAAA+AGG | + | chr3_4:34001496-34001515 | None:intergenic | 30.0% | |
| ! | CCTTTTGTGATATCAATTGA+AGG | - | chr3_4:34001493-34001512 | Msa0498230:intron | 30.0% |
| ! | CTATAATTGACTTATCCTCT+TGG | - | chr3_4:34001703-34001722 | Msa0498230:intron | 30.0% |
| TAAAACATTAATAGCCCAAG+AGG | + | chr3_4:34001721-34001740 | None:intergenic | 30.0% | |
| ! | CTTGGGCTATTAATGTTTTA+TGG | - | chr3_4:34001721-34001740 | Msa0498230:intron | 30.0% |
| TCTATATCACAATTGAAGCA+AGG | + | chr3_4:34001844-34001863 | None:intergenic | 30.0% | |
| ACAGCGTCATTTCAATTATA+TGG | + | chr3_4:34002055-34002074 | None:intergenic | 30.0% | |
| TGTGACCTACTAGAATTAAT+TGG | - | chr3_4:34002189-34002208 | Msa0498230:intron | 30.0% | |
| GAACACCAATTAATTCTAGT+AGG | + | chr3_4:34002197-34002216 | None:intergenic | 30.0% | |
| ! | TAGAATTAATTGGTGTTCGA+TGG | - | chr3_4:34002199-34002218 | Msa0498230:intron | 30.0% |
| ATCATTTATGAGAACACAAG+AGG | + | chr3_4:34002279-34002298 | None:intergenic | 30.0% | |
| ! | TTTTCTGCTGTGATTTTATC+AGG | + | chr3_4:34002396-34002415 | None:intergenic | 30.0% |
| TAACTGGTGCAACAATTATA+TGG | - | chr3_4:34002724-34002743 | Msa0498230:intron | 30.0% | |
| AACTGGTGCAACAATTATAT+GGG | - | chr3_4:34002725-34002744 | Msa0498230:intron | 30.0% | |
| !! | TTATATGGGTGCTATTTGAA+TGG | - | chr3_4:34002739-34002758 | Msa0498230:intron | 30.0% |
| ! | TTCTCTACTATGTTTTGTCT+TGG | - | chr3_4:34002779-34002798 | Msa0498230:intron | 30.0% |
| TGTTCACAAATAACTCTTCT+GGG | + | chr3_4:34003000-34003019 | None:intergenic | 30.0% | |
| ATGTTCACAAATAACTCTTC+TGG | + | chr3_4:34003001-34003020 | None:intergenic | 30.0% | |
| GGTTAACTCTGAATGATAAA+TGG | + | chr3_4:34003152-34003171 | None:intergenic | 30.0% | |
| ACAATGCACATGTTTGATAA+AGG | + | chr3_4:34003173-34003192 | None:intergenic | 30.0% | |
| !! | TGACCTTTTCTTAGTTGATA+TGG | - | chr3_4:34003296-34003315 | Msa0498230:CDS | 30.0% |
| CTACCATATCAACTAAGAAA+AGG | + | chr3_4:34003302-34003321 | None:intergenic | 30.0% | |
| !! | CTTTTCTTAGTTGATATGGT+AGG | - | chr3_4:34003300-34003319 | Msa0498230:CDS | 30.0% |
| TTCATAACATCATACTGCAT+AGG | - | chr3_4:34003378-34003397 | Msa0498230:intron | 30.0% | |
| TAACTTCTATATCGCAAAGA+TGG | + | chr3_4:34003431-34003450 | None:intergenic | 30.0% | |
| TGACAAGGATATTGAAAGAT+GGG | + | chr3_4:34003494-34003513 | None:intergenic | 30.0% | |
| TAAAATGAGGAAAAGTGACA+AGG | + | chr3_4:34003509-34003528 | None:intergenic | 30.0% | |
| TTAAAGCATAAAAGAAGGCA+TGG | - | chr3_4:34003526-34003545 | Msa0498230:CDS | 30.0% | |
| AAATCCCTTAGTAAATAACC+TGG | + | chr3_4:34003614-34003633 | None:intergenic | 30.0% | |
| AGTGTAAAAAACCTTTACAC+CGG | + | chr3_4:34003652-34003671 | None:intergenic | 30.0% | |
| ! | TGTTAAACGTTTTACACTGA+CGG | - | chr3_4:34003767-34003786 | Msa0498230:intron | 30.0% |
| TCAAAAGATGAAAAGAAAGC+CGG | + | chr3_4:34004406-34004425 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTCATCTTTTGA+TGG | - | chr3_4:34004406-34004425 | Msa0498230:intron | 30.0% |
| !! | TGTCTTTTTAAGAAATGTGG+GGG | + | chr3_4:34004510-34004529 | None:intergenic | 30.0% |
| !!! | TTCTGAAATACTTTTGCAAG+TGG | - | chr3_4:34004586-34004605 | Msa0498230:intron | 30.0% |
| !! | TCTGAAATACTTTTGCAAGT+GGG | - | chr3_4:34004587-34004606 | Msa0498230:intron | 30.0% |
| ! | ATATGCTCTAGTTCATGAAA+TGG | - | chr3_4:34004659-34004678 | Msa0498230:intron | 30.0% |
| ! | ACTGGTCTGCAAAAAATATA+TGG | - | chr3_4:34004760-34004779 | Msa0498230:intron | 30.0% |
| CTAGCTGAAGCATAAAAATA+TGG | + | chr3_4:34004940-34004959 | None:intergenic | 30.0% | |
| ! | TCAGGAGAAAAGTTTTCATA+GGG | + | chr3_4:34004963-34004982 | None:intergenic | 30.0% |
| ! | TTCAGGAGAAAAGTTTTCAT+AGG | + | chr3_4:34004964-34004983 | None:intergenic | 30.0% |
| TTATCAGAAAGAACTAAACC+AGG | + | chr3_4:34005070-34005089 | None:intergenic | 30.0% | |
| ! | GAAACAAATGTTTTGTCGAA+AGG | - | chr3_4:34005176-34005195 | Msa0498230:intron | 30.0% |
| GCAAAATAACTATAGAAAGC+TGG | - | chr3_4:34005286-34005305 | Msa0498230:intron | 30.0% | |
| TACAAGATCTCTTCTATGAA+TGG | - | chr3_4:34005413-34005432 | Msa0498230:intron | 30.0% | |
| TGGGTTTCATTTATTTCCTG+GGG | - | chr3_4:34000658-34000677 | Msa0498230:CDS | 35.0% | |
| TCATTTATTTCCTGGGGTTT+CGG | - | chr3_4:34000664-34000683 | Msa0498230:CDS | 35.0% | |
| CAGAGATTAATCCTTTGTGT+CGG | - | chr3_4:34000751-34000770 | Msa0498230:CDS | 35.0% | |
| ACTGCCATCAATCAATCAAA+AGG | + | chr3_4:34000823-34000842 | None:intergenic | 35.0% | |
| ! | TTTGAAACGGAGTGAGTAAT+AGG | + | chr3_4:34000928-34000947 | None:intergenic | 35.0% |
| !! | TGGCTTGTTATTTCTTCTTC+TGG | - | chr3_4:34001083-34001102 | Msa0498230:intron | 35.0% |
| !! | GGCTTGTTATTTCTTCTTCT+GGG | - | chr3_4:34001084-34001103 | Msa0498230:intron | 35.0% |
| CAATTGACTAAGTGTGTGTT+TGG | - | chr3_4:34001184-34001203 | Msa0498230:intron | 35.0% | |
| ATTGACTAAGTGTGTGTTTG+GGG | - | chr3_4:34001186-34001205 | Msa0498230:intron | 35.0% | |
| ! | GTTCAAACGTAACTTTTTGG+TGG | + | chr3_4:34001221-34001240 | None:intergenic | 35.0% |
| ! | GGTGTTCAAACGTAACTTTT+TGG | + | chr3_4:34001224-34001243 | None:intergenic | 35.0% |
| !!! | TTTCTTTTTTTCACGTTGGG+AGG | + | chr3_4:34001245-34001264 | None:intergenic | 35.0% |
| !!! | CCGGACCATACATATTTTTT+AGG | - | chr3_4:34001425-34001444 | Msa0498230:intron | 35.0% |
| ATCACAATTGAAGCAAGGAA+TGG | + | chr3_4:34001839-34001858 | None:intergenic | 35.0% | |
| ! | TGATTTGTCTTCCTCAAAGA+AGG | + | chr3_4:34002469-34002488 | None:intergenic | 35.0% |
| ! | AAACCTGTACACCATCTTTT+AGG | - | chr3_4:34002531-34002550 | Msa0498230:intron | 35.0% |
| ! | ATTTTCCACCTCCTAAAAGA+TGG | + | chr3_4:34002545-34002564 | None:intergenic | 35.0% |
| TTTAGGAGGTGGAAAATGTA+CGG | - | chr3_4:34002548-34002567 | Msa0498230:intron | 35.0% | |
| !! | CTATGTTTTGTCTTGGTTCT+TGG | - | chr3_4:34002786-34002805 | Msa0498230:intron | 35.0% |
| ATGCTTCTAGCATGTTTAAC+AGG | - | chr3_4:34002835-34002854 | Msa0498230:intron | 35.0% | |
| GTGAACATTGCAACTGTAAT+CGG | - | chr3_4:34003013-34003032 | Msa0498230:CDS | 35.0% | |
| CTTCAAGATGTTTCTTGTGA+AGG | - | chr3_4:34003064-34003083 | Msa0498230:intron | 35.0% | |
| GGATGTCAGCAGAATAAATA+TGG | + | chr3_4:34003410-34003429 | None:intergenic | 35.0% | |
| GAAGTTACTTAAGAGTCGAT+TGG | - | chr3_4:34003444-34003463 | Msa0498230:CDS | 35.0% | |
| ATATTGAAAGATGGGATAGC+TGG | + | chr3_4:34003486-34003505 | None:intergenic | 35.0% | |
| GTGACAAGGATATTGAAAGA+TGG | + | chr3_4:34003495-34003514 | None:intergenic | 35.0% | |
| TTCGTCCAGGTTATTTACTA+AGG | - | chr3_4:34003606-34003625 | Msa0498230:exon | 35.0% | |
| TCGTCCAGGTTATTTACTAA+GGG | - | chr3_4:34003607-34003626 | Msa0498230:exon | 35.0% | |
| ! | CATTATTGTGCAAAGTGTCA+AGG | - | chr3_4:34004169-34004188 | Msa0498230:intron | 35.0% |
| !! | TTTTTAAGAAATGTGGGGGT+GGG | + | chr3_4:34004506-34004525 | None:intergenic | 35.0% |
| AAAAACTGGCATAAGAAAGC+TGG | + | chr3_4:34004786-34004805 | None:intergenic | 35.0% | |
| AAGGACACAGATTGAAAAAC+TGG | + | chr3_4:34004800-34004819 | None:intergenic | 35.0% | |
| ATATGGGTCTCTTTACTTTG+AGG | + | chr3_4:34004923-34004942 | None:intergenic | 35.0% | |
| ATAGTAAGATGCAGAGATGA+AGG | - | chr3_4:34004997-34005016 | Msa0498230:intron | 35.0% | |
| TCATACCTTTCATAGAGAAC+TGG | + | chr3_4:34005224-34005243 | None:intergenic | 35.0% | |
| ! | AGTTCTCTATGAAAGGTATG+AGG | - | chr3_4:34005223-34005242 | Msa0498230:intron | 35.0% |
| ATTGGTTGAAGGGAATAAGT+AGG | - | chr3_4:34005380-34005399 | Msa0498230:intron | 35.0% | |
| TTGGTTGAAGGGAATAAGTA+GGG | - | chr3_4:34005381-34005400 | Msa0498230:intron | 35.0% | |
| ! | GGAAGTACAGAGAACGAAAA+TGG | + | chr3_4:34000507-34000526 | None:intergenic | 40.0% |
| AGAGAGAGAGAGAAACAGAA+GGG | + | chr3_4:34000528-34000547 | None:intergenic | 40.0% | |
| AACCAAACAATCACACGTTG+CGG | + | chr3_4:34000783-34000802 | None:intergenic | 40.0% | |
| ! | GAGAAGCTTAGTGCTTTGTT+CGG | + | chr3_4:34001324-34001343 | None:intergenic | 40.0% |
| !!! | GCCTTTTGTTTTTTTGGTGG+TGG | - | chr3_4:34001370-34001389 | Msa0498230:intron | 40.0% |
| GCCACCACCAAAAAAACAAA+AGG | + | chr3_4:34001374-34001393 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTTTTGGTGGTGGC+CGG | - | chr3_4:34001374-34001393 | Msa0498230:intron | 40.0% |
| TGAGCTTAGCTCAATTGGTA+TGG | + | chr3_4:34001457-34001476 | None:intergenic | 40.0% | |
| ATGAAACACCGACACAAACA+CGG | - | chr3_4:34001867-34001886 | Msa0498230:intron | 40.0% | |
| TCTGATATCCGTGTTTGTGT+CGG | + | chr3_4:34001878-34001897 | None:intergenic | 40.0% | |
| ! | ATGCTTCCAATCTGAAGTGT+CGG | - | chr3_4:34002005-34002024 | Msa0498230:intron | 40.0% |
| !! | GTCTTTGATGATGTGCTTTC+TGG | - | chr3_4:34002346-34002365 | Msa0498230:intron | 40.0% |
| CAACCTTGTCGACACATTAT+CGG | - | chr3_4:34002425-34002444 | Msa0498230:intron | 40.0% | |
| !! | GGCTTTAAATGCTATAGCTG+CGG | - | chr3_4:34002659-34002678 | Msa0498230:intron | 40.0% |
| ACCATAGAAATTGAGCAAGC+AGG | + | chr3_4:34002812-34002831 | None:intergenic | 40.0% | |
| TGCAACTGTAATCGGAAATG+AGG | - | chr3_4:34003021-34003040 | Msa0498230:CDS | 40.0% | |
| TGATTAAAAAGCAAGCACGG+AGG | + | chr3_4:34003196-34003215 | None:intergenic | 40.0% | |
| ! | TGTGCACAGTATTTTGTCGT+AGG | - | chr3_4:34003339-34003358 | Msa0498230:intron | 40.0% |
| ! | AAAGATGGGATAGCTGGTTT+CGG | + | chr3_4:34003480-34003499 | None:intergenic | 40.0% |
| ! | GAAGGCATGGTGTATGTAAA+TGG | - | chr3_4:34003539-34003558 | Msa0498230:CDS | 40.0% |
| TATATACATCGCCGGTGTAA+AGG | - | chr3_4:34003638-34003657 | Msa0498230:intron | 40.0% | |
| ATGAGGTCTGCTAATACACT+AGG | - | chr3_4:34004042-34004061 | Msa0498230:intron | 40.0% | |
| ! | GCCTCATTTTGTCACTGTTA+TGG | - | chr3_4:34004133-34004152 | Msa0498230:intron | 40.0% |
| GCCATAACAGTGACAAAATG+AGG | + | chr3_4:34004137-34004156 | None:intergenic | 40.0% | |
| TGAAAGTTGAAACACTCTCC+AGG | - | chr3_4:34004305-34004324 | Msa0498230:intron | 40.0% | |
| GTCATCTATATTGGTGAGTC+CGG | - | chr3_4:34004384-34004403 | Msa0498230:intron | 40.0% | |
| !! | CTTTTTAAGAAATGTGGGGG+TGG | + | chr3_4:34004507-34004526 | None:intergenic | 40.0% |
| GGAAGATTTCCTCCCTATTA+AGG | - | chr3_4:34004608-34004627 | Msa0498230:intron | 40.0% | |
| ATGGGGAAGCAACCTTAATA+GGG | + | chr3_4:34004623-34004642 | None:intergenic | 40.0% | |
| TATGGGGAAGCAACCTTAAT+AGG | + | chr3_4:34004624-34004643 | None:intergenic | 40.0% | |
| ATACTGCTAGTGCTAGGTAT+GGG | + | chr3_4:34004641-34004660 | None:intergenic | 40.0% | |
| TATACTGCTAGTGCTAGGTA+TGG | + | chr3_4:34004642-34004661 | None:intergenic | 40.0% | |
| CAGGAAGCAGATTGAAAACA+AGG | - | chr3_4:34004852-34004871 | Msa0498230:intron | 40.0% | |
| CACTTCCAGTTCTCTATGAA+AGG | - | chr3_4:34005216-34005235 | Msa0498230:intron | 40.0% | |
| AGTTGACAACTTTGTGCTCA+AGG | - | chr3_4:34005250-34005269 | Msa0498230:intron | 40.0% | |
| AACTTTGTGCTCAAGGTCTT+TGG | - | chr3_4:34005257-34005276 | Msa0498230:intron | 40.0% | |
| AACTATAGAAAGCTGGATGC+TGG | - | chr3_4:34005293-34005312 | Msa0498230:intron | 40.0% | |
| TGGTTGAAGGGAATAAGTAG+GGG | - | chr3_4:34005382-34005401 | Msa0498230:intron | 40.0% | |
| GAGAGAGAGAGAGAAACAGA+AGG | + | chr3_4:34000529-34000548 | None:intergenic | 45.0% | |
| ACTGTATAAACCGAAACCCC+AGG | + | chr3_4:34000677-34000696 | None:intergenic | 45.0% | |
| ACTAAGCTTCTCTTGTCTGC+TGG | - | chr3_4:34001332-34001351 | Msa0498230:intron | 45.0% | |
| !!! | TTGTTTTTTTGGTGGTGGCC+GGG | - | chr3_4:34001375-34001394 | Msa0498230:intron | 45.0% |
| TGTCAGATACCGACACATGT+TGG | - | chr3_4:34001971-34001990 | Msa0498230:intron | 45.0% | |
| ! | ATGTGTCGACAAGGTTGTGA+AGG | + | chr3_4:34002422-34002441 | None:intergenic | 45.0% |
| ! | TGTCCGATAATGTGTCGACA+AGG | + | chr3_4:34002431-34002450 | None:intergenic | 45.0% |
| TCCGAGATCAACAGACTGTT+CGG | - | chr3_4:34002501-34002520 | Msa0498230:intron | 45.0% | |
| TCCGAACAGTCTGTTGATCT+CGG | + | chr3_4:34002505-34002524 | None:intergenic | 45.0% | |
| CCTCCTAAAAGATGGTGTAC+AGG | + | chr3_4:34002537-34002556 | None:intergenic | 45.0% | |
| ! | CCTGTACACCATCTTTTAGG+AGG | - | chr3_4:34002534-34002553 | Msa0498230:intron | 45.0% |
| !! | GTACACCATCTTTTAGGAGG+TGG | - | chr3_4:34002537-34002556 | Msa0498230:intron | 45.0% |
| ! | TAGCTGCGGATGTTTTGCTA+TGG | - | chr3_4:34002673-34002692 | Msa0498230:intron | 45.0% |
| GCCTGCTTGCTCAATTTCTA+TGG | - | chr3_4:34002808-34002827 | Msa0498230:intron | 45.0% | |
| ATCGGAAATGAGGTTAACCG+TGG | - | chr3_4:34003031-34003050 | Msa0498230:intron | 45.0% | |
| TCGGAAATGAGGTTAACCGT+GGG | - | chr3_4:34003032-34003051 | Msa0498230:intron | 45.0% | |
| CTTGAAGAAACCTCAACCCA+CGG | + | chr3_4:34003051-34003070 | None:intergenic | 45.0% | |
| ! | TGTGCATAAAGTGTTCGTCC+AGG | - | chr3_4:34003593-34003612 | Msa0498230:CDS | 45.0% |
| TCTATGCCTCCACATACGTT+GGG | + | chr3_4:34003992-34004011 | None:intergenic | 45.0% | |
| TCCAGGTTGTCGTAAGTTTG+TGG | - | chr3_4:34004322-34004341 | Msa0498230:intron | 45.0% | |
| CCAGGTTGTCGTAAGTTTGT+GGG | - | chr3_4:34004323-34004342 | Msa0498230:intron | 45.0% | |
| TACTGCTAGTGCTAGGTATG+GGG | + | chr3_4:34004640-34004659 | None:intergenic | 45.0% | |
| GAGCATATACTGCTAGTGCT+AGG | + | chr3_4:34004647-34004666 | None:intergenic | 45.0% | |
| ACAAGTCGATAACTCTCAGG+GGG | + | chr3_4:34004690-34004709 | None:intergenic | 45.0% | |
| CACAAGTCGATAACTCTCAG+GGG | + | chr3_4:34004691-34004710 | None:intergenic | 45.0% | |
| CCACAAGTCGATAACTCTCA+GGG | + | chr3_4:34004692-34004711 | None:intergenic | 45.0% | |
| ACCACAAGTCGATAACTCTC+AGG | + | chr3_4:34004693-34004712 | None:intergenic | 45.0% | |
| CTTACCTAGAGCCCCAAAAA+GGG | - | chr3_4:34004727-34004746 | Msa0498230:intron | 45.0% | |
| GGTTGAAGGGAATAAGTAGG+GGG | - | chr3_4:34005383-34005402 | Msa0498230:intron | 45.0% | |
| CTCTCTCTCTGCTTAGTCTC+TGG | - | chr3_4:34000542-34000561 | Msa0498230:three_prime_UTR | 50.0% | |
| TAGTTGCACGCAGAGATACC+CGG | + | chr3_4:34000731-34000750 | None:intergenic | 50.0% | |
| ! | TGCGGTCTTATCCGACACAA+AGG | + | chr3_4:34000765-34000784 | None:intergenic | 50.0% |
| GACCGCAACGTGTGATTGTT+TGG | - | chr3_4:34000778-34000797 | Msa0498230:CDS | 50.0% | |
| ! | TAGTGCTTTGTTCGGACCCA+CGG | + | chr3_4:34001316-34001335 | None:intergenic | 50.0% |
| !!! | TGTTTTTTTGGTGGTGGCCG+GGG | - | chr3_4:34001376-34001395 | Msa0498230:intron | 50.0% |
| CCTCGTGAGCTTAGCTCAAT+TGG | + | chr3_4:34001462-34001481 | None:intergenic | 50.0% | |
| CCAATTGAGCTAAGCTCACG+AGG | - | chr3_4:34001459-34001478 | Msa0498230:intron | 50.0% | |
| TACCGACACATGTTGGACAG+AGG | - | chr3_4:34001978-34001997 | Msa0498230:intron | 50.0% | |
| GTCCTCTGTCCAACATGTGT+CGG | + | chr3_4:34001983-34002002 | None:intergenic | 50.0% | |
| !! | GTAGCACCGACACTTCAGAT+TGG | + | chr3_4:34002014-34002033 | None:intergenic | 50.0% |
| !! | TCGGTGCTACATGAGCAGAA+AGG | - | chr3_4:34002024-34002043 | Msa0498230:intron | 50.0% |
| TGTCGACAAGGTTGTGAAGG+AGG | + | chr3_4:34002419-34002438 | None:intergenic | 50.0% | |
| !! | CTGCGGATGTTTTGCTATGG+AGG | - | chr3_4:34002676-34002695 | Msa0498230:intron | 50.0% |
| ! | GCAACACGAGGTACTTGAGA+TGG | + | chr3_4:34002974-34002993 | None:intergenic | 50.0% |
| ! | ATGAGGTTAACCGTGGGTTG+AGG | - | chr3_4:34003038-34003057 | Msa0498230:intron | 50.0% |
| ACTAAATCTCACGAGCCAGC+TGG | - | chr3_4:34003961-34003980 | Msa0498230:intron | 50.0% | |
| CTAAATCTCACGAGCCAGCT+GGG | - | chr3_4:34003962-34003981 | Msa0498230:intron | 50.0% | |
| CTCTATGCCTCCACATACGT+TGG | + | chr3_4:34003993-34004012 | None:intergenic | 50.0% | |
| ! | TGGAGGCATAGAGCTTACTC+CGG | - | chr3_4:34004000-34004019 | Msa0498230:intron | 50.0% |
| TGTTGACCTCTGTTCGGATG+AGG | - | chr3_4:34004025-34004044 | Msa0498230:intron | 50.0% | |
| CCCACAAACTTACGACAACC+TGG | + | chr3_4:34004326-34004345 | None:intergenic | 50.0% | |
| GTTGTCGTAAGTTTGTGGGC+TGG | - | chr3_4:34004327-34004346 | Msa0498230:intron | 50.0% | |
| !! | TTGTGGGCTGGTTCAGTGAT+CGG | - | chr3_4:34004339-34004358 | Msa0498230:intron | 50.0% |
| GGGAAGCAACCTTAATAGGG+AGG | + | chr3_4:34004620-34004639 | None:intergenic | 50.0% | |
| !! | CCCTGAGAGTTATCGACTTG+TGG | - | chr3_4:34004689-34004708 | Msa0498230:intron | 50.0% |
| GCTTACCTAGAGCCCCAAAA+AGG | - | chr3_4:34004726-34004745 | Msa0498230:intron | 50.0% | |
| ! | TTTTTGCAGACCAGTGCTCG+TGG | + | chr3_4:34004755-34004774 | None:intergenic | 50.0% |
| CCAGGCGTGTCTTTGTGAAT+AGG | + | chr3_4:34005052-34005071 | None:intergenic | 50.0% | |
| CCTATTCACAAAGACACGCC+TGG | - | chr3_4:34005049-34005068 | Msa0498230:intron | 50.0% | |
| TATGGTCCGGGGTTCAAACC+CGG | + | chr3_4:34001415-34001434 | None:intergenic | 55.0% | |
| CTGTTGATCTCGGAGCTCAC+TGG | + | chr3_4:34002495-34002514 | None:intergenic | 55.0% | |
| !! | TCTTCTGGGACAGCAACACG+AGG | + | chr3_4:34002986-34003005 | None:intergenic | 55.0% |
| CCGAACAGAGGTCAACACAC+CGG | + | chr3_4:34004022-34004041 | None:intergenic | 55.0% | |
| ! | CCGGTGTGTTGACCTCTGTT+CGG | - | chr3_4:34004019-34004038 | Msa0498230:intron | 55.0% |
| AGCAGACCTCATCCGAACAG+AGG | + | chr3_4:34004034-34004053 | None:intergenic | 55.0% | |
| !! | TGTGGGCTGGTTCAGTGATC+GGG | - | chr3_4:34004340-34004359 | Msa0498230:intron | 55.0% |
| CTGGTTCAGTGATCGGGAGT+TGG | - | chr3_4:34004346-34004365 | Msa0498230:intron | 55.0% | |
| ! | TGCTCGTGGCTCCCTTTTTG+GGG | + | chr3_4:34004741-34004760 | None:intergenic | 55.0% |
| ! | GTGCTCGTGGCTCCCTTTTT+GGG | + | chr3_4:34004742-34004761 | None:intergenic | 55.0% |
| ! | AGTGCTCGTGGCTCCCTTTT+TGG | + | chr3_4:34004743-34004762 | None:intergenic | 55.0% |
| AAAAAGGGAGCCACGAGCAC+TGG | - | chr3_4:34004742-34004761 | Msa0498230:intron | 55.0% | |
| CTGGATGCTGGTGTGCTCAA+AGG | - | chr3_4:34005305-34005324 | Msa0498230:intron | 55.0% | |
| ! | GCTTTGTTCGGACCCACGGT+GGG | + | chr3_4:34001312-34001331 | None:intergenic | 60.0% |
| ! | TGCTTTGTTCGGACCCACGG+TGG | + | chr3_4:34001313-34001332 | None:intergenic | 60.0% |
| !!! | GGCTCCCTTTTTGGGGCTCT+AGG | + | chr3_4:34004734-34004753 | None:intergenic | 60.0% |
| GTTTGGCCCTCTCCCACCGT+GGG | - | chr3_4:34001297-34001316 | Msa0498230:intron | 65.0% | |
| TTCGGACCCACGGTGGGAGA+GGG | + | chr3_4:34001306-34001325 | None:intergenic | 65.0% | |
| TCCGGGGTTCAAACCCGGTC+CGG | + | chr3_4:34001410-34001429 | None:intergenic | 65.0% | |
| ATCTCACGAGCCAGCTGGGC+TGG | - | chr3_4:34003966-34003985 | Msa0498230:intron | 65.0% | |
| ATACGTTGGGCCAGCCCAGC+TGG | + | chr3_4:34003979-34003998 | None:intergenic | 65.0% | |
| !! | CTGGGCTGGCCCAACGTATG+TGG | - | chr3_4:34003980-34003999 | Msa0498230:intron | 65.0% |
| ! | GGCTGGCCCAACGTATGTGG+AGG | - | chr3_4:34003983-34004002 | Msa0498230:intron | 65.0% |
| CGTTTGGCCCTCTCCCACCG+TGG | - | chr3_4:34001296-34001315 | Msa0498230:intron | 70.0% | |
| GTTCGGACCCACGGTGGGAG+AGG | + | chr3_4:34001307-34001326 | None:intergenic | 70.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr3_4:34001388-34001407 | Msa0498230:intron | 70.0% | |
| CCGGTCCGGGGTTCAAACCC+CGG | + | chr3_4:34001396-34001415 | None:intergenic | 70.0% | |
| CCGGGGTTTGAACCCCGGAC+CGG | - | chr3_4:34001393-34001412 | Msa0498230:intron | 70.0% | |
| CGGGGTTTGAACCCCGGACC+GGG | - | chr3_4:34001394-34001413 | Msa0498230:intron | 70.0% | |
| CGGGGTTCAAACCCGGTCCG+GGG | + | chr3_4:34001408-34001427 | None:intergenic | 70.0% | |
| CCGGGGTTCAAACCCGGTCC+GGG | + | chr3_4:34001409-34001428 | None:intergenic | 70.0% | |
| CCCGGACCGGGTTTGAACCC+CGG | - | chr3_4:34001406-34001425 | Msa0498230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 34000408 | 34005600 | 34000408 | ID=Msa0498230;Name=Msa0498230 |
| chr3_4 | mRNA | 34000408 | 34005600 | 34000408 | ID=Msa0498230-mRNA-1;Parent=Msa0498230;Name=Msa0498230-mRNA-1;_AED=0.18;_eAED=0.18;_QI=170|1|1|1|0.8|0.66|6|245|241 |
| chr3_4 | exon | 34000408 | 34000810 | 34000408 | ID=Msa0498230-mRNA-1:exon:7279;Parent=Msa0498230-mRNA-1 |
| chr3_4 | exon | 34001612 | 34001681 | 34001612 | ID=Msa0498230-mRNA-1:exon:7278;Parent=Msa0498230-mRNA-1 |
| chr3_4 | exon | 34002900 | 34003041 | 34002900 | ID=Msa0498230-mRNA-1:exon:7277;Parent=Msa0498230-mRNA-1 |
| chr3_4 | exon | 34003152 | 34003332 | 34003152 | ID=Msa0498230-mRNA-1:exon:7276;Parent=Msa0498230-mRNA-1 |
| chr3_4 | exon | 34003444 | 34003632 | 34003444 | ID=Msa0498230-mRNA-1:exon:7275;Parent=Msa0498230-mRNA-1 |
| chr3_4 | exon | 34005445 | 34005600 | 34005445 | ID=Msa0498230-mRNA-1:exon:7274;Parent=Msa0498230-mRNA-1 |
| chr3_4 | five_prime_UTR | 34005445 | 34005600 | 34005445 | ID=Msa0498230-mRNA-1:five_prime_utr;Parent=Msa0498230-mRNA-1 |
| chr3_4 | five_prime_UTR | 34003619 | 34003632 | 34003619 | ID=Msa0498230-mRNA-1:five_prime_utr;Parent=Msa0498230-mRNA-1 |
| chr3_4 | CDS | 34003444 | 34003618 | 34003444 | ID=Msa0498230-mRNA-1:cds;Parent=Msa0498230-mRNA-1 |
| chr3_4 | CDS | 34003152 | 34003332 | 34003152 | ID=Msa0498230-mRNA-1:cds;Parent=Msa0498230-mRNA-1 |
| chr3_4 | CDS | 34002900 | 34003041 | 34002900 | ID=Msa0498230-mRNA-1:cds;Parent=Msa0498230-mRNA-1 |
| chr3_4 | CDS | 34001612 | 34001681 | 34001612 | ID=Msa0498230-mRNA-1:cds;Parent=Msa0498230-mRNA-1 |
| chr3_4 | CDS | 34000653 | 34000810 | 34000653 | ID=Msa0498230-mRNA-1:cds;Parent=Msa0498230-mRNA-1 |
| chr3_4 | three_prime_UTR | 34000408 | 34000652 | 34000408 | ID=Msa0498230-mRNA-1:three_prime_utr;Parent=Msa0498230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
