Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358730 | XP_013459616.1 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 8.27e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358730 | sp|Q9SS37|RTNLH_ARATH | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.52e-102 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358730 | A0A072UVI7 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 3.95e-157 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0150560 | Msa0358730 | 0.802209 | 6.254793e-49 | -8.615850e-47 |
| Msa0222340 | Msa0358730 | 0.818216 | 2.200365e-52 | -8.615850e-47 |
| Msa0358730 | Msa0388840 | 0.813619 | 2.335083e-51 | -8.615850e-47 |
| Msa0358730 | Msa0404890 | 0.928265 | 3.685671e-92 | -8.615850e-47 |
| Msa0358730 | Msa0498230 | 0.998111 | 2.065443e-256 | -8.615850e-47 |
| Msa0358730 | Msa0568240 | 0.803990 | 2.677030e-49 | -8.615850e-47 |
| Msa0358730 | Msa0631990 | 0.804677 | 1.925795e-49 | -8.615850e-47 |
| Msa0358730 | Msa0678820 | 0.803536 | 3.327207e-49 | -8.615850e-47 |
| Msa0358730 | Msa0714340 | 0.837075 | 6.435961e-57 | -8.615850e-47 |
| Msa0358730 | Msa0714380 | 0.840426 | 8.760658e-58 | -8.615850e-47 |
| Msa0358730 | Msa0756310 | 0.840137 | 1.042034e-57 | -8.615850e-47 |
| Msa0358730 | Msa0798860 | 0.816983 | 4.173163e-52 | -8.615850e-47 |
| Msa0358730 | Msa0835730 | 0.842948 | 1.892592e-58 | -8.615850e-47 |
| Msa0358730 | Msa0878880 | 0.813020 | 3.161750e-51 | -8.615850e-47 |
| Msa0358730 | Msa1118750 | 0.804798 | 1.816774e-49 | -8.615850e-47 |
| Msa0358730 | Msa1132950 | 0.801149 | 1.031610e-48 | -8.615850e-47 |
| Msa0358730 | Msa1143270 | 0.830195 | 3.367000e-55 | -8.615850e-47 |
| Msa0358730 | Msa1187780 | 0.830689 | 2.550077e-55 | -8.615850e-47 |
| Msa0358730 | Msa1208810 | 0.806602 | 7.597496e-50 | -8.615850e-47 |
| Msa0358730 | Msa1217810 | 0.808274 | 3.356987e-50 | -8.615850e-47 |
| Msa0358730 | Msa1252070 | 0.813666 | 2.280537e-51 | -8.615850e-47 |
| Msa0358730 | Msa1279210 | 0.801826 | 7.497435e-49 | -8.615850e-47 |
| Msa0358730 | Msa1292730 | 0.830376 | 3.040449e-55 | -8.615850e-47 |
| Msa0358730 | Msa1328700 | 0.810981 | 8.797107e-51 | -8.615850e-47 |
| Msa0358730 | Msa1376760 | 0.808350 | 3.234349e-50 | -8.615850e-47 |
| Msa0358730 | Msa1396090 | 0.824782 | 6.698473e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358730 | MtrunA17_Chr3g0095441 | 95.614 | 228 | 10 | 0 | 1 | 228 | 1 | 228 | 7.60e-161 | 444 |
| Msa0358730 | MtrunA17_Chr5g0442361 | 65.560 | 241 | 80 | 2 | 1 | 239 | 1 | 240 | 6.04e-107 | 308 |
| Msa0358730 | MtrunA17_Chr8g0387631 | 48.858 | 219 | 106 | 2 | 29 | 241 | 42 | 260 | 1.05e-69 | 214 |
| Msa0358730 | MtrunA17_Chr8g0348131 | 46.698 | 212 | 101 | 1 | 36 | 235 | 55 | 266 | 1.73e-65 | 204 |
| Msa0358730 | MtrunA17_Chr1g0202401 | 46.154 | 195 | 105 | 0 | 37 | 231 | 45 | 239 | 3.85e-59 | 187 |
| Msa0358730 | MtrunA17_Chr8g0376101 | 36.620 | 213 | 131 | 1 | 31 | 239 | 9 | 221 | 7.22e-50 | 162 |
| Msa0358730 | MtrunA17_Chr1g0209261 | 34.597 | 211 | 128 | 3 | 35 | 241 | 2 | 206 | 2.22e-38 | 132 |
| Msa0358730 | MtrunA17_Chr3g0108661 | 31.390 | 223 | 150 | 2 | 5 | 226 | 10 | 230 | 1.09e-32 | 119 |
| Msa0358730 | MtrunA17_Chr4g0005701 | 35.294 | 187 | 121 | 0 | 41 | 227 | 5 | 191 | 9.19e-32 | 115 |
| Msa0358730 | MtrunA17_Chr1g0208091 | 36.813 | 182 | 115 | 0 | 50 | 231 | 9 | 190 | 6.57e-26 | 100 |
| Msa0358730 | MtrunA17_Chr5g0402811 | 31.073 | 177 | 122 | 0 | 55 | 231 | 29 | 205 | 3.60e-25 | 99.0 |
| Msa0358730 | MtrunA17_Chr6g0453331 | 33.140 | 172 | 115 | 0 | 60 | 231 | 14 | 185 | 2.30e-23 | 93.6 |
| Msa0358730 | MtrunA17_Chr5g0402701 | 33.099 | 142 | 95 | 0 | 62 | 203 | 344 | 485 | 1.28e-18 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0358730 | AT3G10260.1 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.58e-103 | 299 |
| Msa0358730 | AT3G10260.2 | 56.680 | 247 | 97 | 3 | 1 | 239 | 1 | 245 | 3.58e-103 | 299 |
| Msa0358730 | AT3G10260.3 | 56.452 | 248 | 98 | 3 | 1 | 240 | 21 | 266 | 6.25e-103 | 300 |
| Msa0358730 | AT2G46170.1 | 48.756 | 201 | 103 | 0 | 31 | 231 | 40 | 240 | 2.69e-67 | 208 |
| Msa0358730 | AT3G61560.1 | 47.959 | 196 | 102 | 0 | 36 | 231 | 45 | 240 | 1.77e-64 | 201 |
| Msa0358730 | AT3G61560.2 | 47.959 | 196 | 102 | 0 | 36 | 231 | 45 | 240 | 1.77e-64 | 201 |
| Msa0358730 | AT1G64090.1 | 45.729 | 199 | 108 | 0 | 33 | 231 | 38 | 236 | 5.07e-64 | 200 |
| Msa0358730 | AT1G64090.2 | 42.326 | 215 | 108 | 1 | 33 | 231 | 38 | 252 | 4.91e-60 | 191 |
| Msa0358730 | AT4G11220.1 | 40.777 | 206 | 118 | 1 | 40 | 241 | 66 | 271 | 8.44e-60 | 190 |
| Msa0358730 | AT4G23630.1 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.43e-59 | 188 |
| Msa0358730 | AT4G23630.2 | 43.204 | 206 | 113 | 1 | 40 | 241 | 70 | 275 | 5.43e-59 | 188 |
| Msa0358730 | AT5G41600.1 | 44.041 | 193 | 108 | 0 | 40 | 232 | 49 | 241 | 1.37e-57 | 184 |
| Msa0358730 | AT3G61560.3 | 49.057 | 159 | 81 | 0 | 31 | 189 | 40 | 198 | 3.39e-51 | 166 |
| Msa0358730 | AT4G01230.2 | 40.299 | 201 | 117 | 1 | 31 | 231 | 42 | 239 | 5.33e-49 | 161 |
| Msa0358730 | AT3G18260.1 | 38.537 | 205 | 122 | 1 | 39 | 239 | 19 | 223 | 1.54e-48 | 159 |
| Msa0358730 | AT4G01230.1 | 39.303 | 201 | 117 | 2 | 31 | 231 | 42 | 237 | 1.16e-45 | 152 |
| Msa0358730 | AT2G46170.2 | 48.905 | 137 | 70 | 0 | 31 | 167 | 40 | 176 | 5.66e-43 | 144 |
| Msa0358730 | AT3G10915.2 | 29.954 | 217 | 148 | 1 | 15 | 231 | 1 | 213 | 8.65e-34 | 122 |
| Msa0358730 | AT3G10915.7 | 31.122 | 196 | 135 | 0 | 37 | 232 | 44 | 239 | 1.71e-33 | 121 |
| Msa0358730 | AT3G10915.4 | 29.817 | 218 | 148 | 2 | 15 | 231 | 1 | 214 | 4.44e-32 | 117 |
| Msa0358730 | AT2G15280.1 | 31.720 | 186 | 127 | 0 | 47 | 232 | 2 | 187 | 8.98e-32 | 115 |
| Msa0358730 | AT3G19460.1 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.86e-29 | 108 |
| Msa0358730 | AT3G19460.5 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.86e-29 | 108 |
| Msa0358730 | AT3G19460.4 | 33.696 | 184 | 122 | 0 | 51 | 234 | 14 | 197 | 4.86e-29 | 108 |
| Msa0358730 | AT3G10915.5 | 27.083 | 240 | 148 | 3 | 15 | 231 | 1 | 236 | 9.29e-27 | 103 |
| Msa0358730 | AT1G68230.2 | 33.696 | 184 | 116 | 2 | 50 | 231 | 22 | 201 | 3.52e-26 | 101 |
| Msa0358730 | AT3G10915.6 | 27.933 | 179 | 129 | 0 | 54 | 232 | 4 | 182 | 9.11e-25 | 97.4 |
| Msa0358730 | AT3G10915.3 | 28.161 | 174 | 125 | 0 | 59 | 232 | 8 | 181 | 1.45e-24 | 97.1 |
| Msa0358730 | AT3G54120.1 | 31.250 | 192 | 132 | 0 | 36 | 227 | 1 | 192 | 4.43e-23 | 93.2 |
| Msa0358730 | AT3G19460.3 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 3.19e-22 | 91.7 |
| Msa0358730 | AT3G19460.7 | 29.817 | 218 | 119 | 3 | 51 | 234 | 14 | 231 | 3.19e-22 | 91.7 |
| Msa0358730 | AT3G19460.2 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 5.40e-19 | 82.8 |
| Msa0358730 | AT3G19460.6 | 29.187 | 209 | 114 | 3 | 60 | 234 | 7 | 215 | 5.40e-19 | 82.8 |
| Msa0358730 | AT1G68230.1 | 34.965 | 143 | 87 | 2 | 50 | 190 | 22 | 160 | 9.33e-19 | 80.9 |
| Msa0358730 | AT3G10915.1 | 28.571 | 154 | 106 | 1 | 15 | 168 | 1 | 150 | 4.40e-17 | 76.3 |
| Msa0358730 | AT2G23640.1 | 24.294 | 177 | 134 | 0 | 61 | 237 | 18 | 194 | 1.64e-14 | 70.5 |
| Msa0358730 | AT2G15280.2 | 27.586 | 116 | 84 | 0 | 47 | 162 | 2 | 117 | 5.91e-12 | 62.4 |
Find 54 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATCCTTATGTAAATTAT+TGG | 0.151012 | 3_1:-44287422 | Msa0358730:three_prime_UTR |
| TAACTGGTGCAACAATTATA+TGG | 0.199383 | 3_1:-44290055 | Msa0358730:CDS |
| AACTTTGTGCTCAAGGTCTT+TGG | 0.269918 | 3_1:-44287522 | Msa0358730:CDS |
| GCCTGCTTGCTCAATTTCTA+TGG | 0.286324 | 3_1:-44289971 | Msa0358730:CDS |
| ATGTTCACAAATAACTCTTC+TGG | 0.294981 | 3_1:+44289781 | None:intergenic |
| GGAAGTACAGAGAACGAAAA+TGG | 0.334230 | 3_1:+44292275 | None:intergenic |
| ATGCTTCTAGCATGTTTAAC+AGG | 0.343523 | 3_1:-44289944 | Msa0358730:intron |
| GTGAACATTGCAACTGTAAT+CGG | 0.350430 | 3_1:-44289766 | Msa0358730:CDS |
| CAACCTTGTCGACACATTAT+CGG | 0.356122 | 3_1:-44290354 | Msa0358730:CDS |
| TCCAGGTTGTCGTAAGTTTG+TGG | 0.393138 | 3_1:-44288457 | Msa0358730:intron |
| AACTGGTGCAACAATTATAT+GGG | 0.403050 | 3_1:-44290054 | Msa0358730:CDS |
| CTCTCTCTCTGCTTAGTCTC+TGG | 0.405745 | 3_1:-44292237 | Msa0358730:intron |
| CCAGGTTGTCGTAAGTTTGT+GGG | 0.407558 | 3_1:-44288456 | Msa0358730:intron |
| TAAATTATTGGATTGGTTGA+AGG | 0.413047 | 3_1:-44287410 | Msa0358730:three_prime_UTR |
| TGTGGGCTGGTTCAGTGATC+GGG | 0.419844 | 3_1:-44288439 | Msa0358730:CDS |
| TGATTTGTCTTCCTCAAAGA+AGG | 0.421270 | 3_1:+44290313 | None:intergenic |
| TGTTCACAAATAACTCTTCT+GGG | 0.437588 | 3_1:+44289782 | None:intergenic |
| TTGTGGGCTGGTTCAGTGAT+CGG | 0.439695 | 3_1:-44288440 | Msa0358730:CDS |
| TTATATGGGTGCTATTTGAA+TGG | 0.444221 | 3_1:-44290040 | Msa0358730:CDS |
| CCTTATGTAAATTATTGGAT+TGG | 0.445715 | 3_1:-44287417 | Msa0358730:three_prime_UTR |
| CTTCAAGATGTTTCTTGTGA+AGG | 0.447481 | 3_1:-44289715 | Msa0358730:CDS |
| TACAAGATCTCTTCTATGAA+TGG | 0.461169 | 3_1:-44287366 | Msa0358730:three_prime_UTR |
| TCATACCTTTCATAGAGAAC+TGG | 0.464929 | 3_1:+44287558 | None:intergenic |
| CCAATCCAATAATTTACATA+AGG | 0.471474 | 3_1:+44287417 | None:intergenic |
| AAATTATTGGATTGGTTGAA+GGG | 0.472743 | 3_1:-44287409 | Msa0358730:three_prime_UTR |
| AACATGTGGTTAGGTATGAT+TGG | 0.473818 | 3_1:-44292376 | None:intergenic |
| AACTATAGAAAGCTGGATGC+TGG | 0.477192 | 3_1:-44287486 | Msa0358730:CDS |
| TCCGAGATCAACAGACTGTT+CGG | 0.480198 | 3_1:-44290278 | Msa0358730:CDS |
| CTGGTTCAGTGATCGGGAGT+TGG | 0.488082 | 3_1:-44288433 | Msa0358730:CDS |
| GCAAAATAACTATAGAAAGC+TGG | 0.488536 | 3_1:-44287493 | Msa0358730:CDS |
| TGAATGAGAAACATGTGGTT+AGG | 0.500499 | 3_1:-44292385 | None:intergenic |
| TTGGTTGAAGGGAATAAGTA+GGG | 0.505901 | 3_1:-44287398 | Msa0358730:three_prime_UTR |
| TCCGAACAGTCTGTTGATCT+CGG | 0.515369 | 3_1:+44290277 | None:intergenic |
| CTGTTGATCTCGGAGCTCAC+TGG | 0.516835 | 3_1:+44290287 | None:intergenic |
| GTTGTCGTAAGTTTGTGGGC+TGG | 0.521608 | 3_1:-44288452 | Msa0358730:CDS |
| ACCATAGAAATTGAGCAAGC+AGG | 0.524128 | 3_1:+44289970 | None:intergenic |
| CACTTCCAGTTCTCTATGAA+AGG | 0.525840 | 3_1:-44287563 | Msa0358730:CDS |
| CCTCCTAAAAGATGGTGTAC+AGG | 0.528013 | 3_1:+44290245 | None:intergenic |
| ATTGGTTGAAGGGAATAAGT+AGG | 0.538389 | 3_1:-44287399 | Msa0358730:three_prime_UTR |
| TGCAACTGTAATCGGAAATG+AGG | 0.543462 | 3_1:-44289758 | Msa0358730:CDS |
| AGTTGACAACTTTGTGCTCA+AGG | 0.544627 | 3_1:-44287529 | Msa0358730:CDS |
| ATGAGGTTAACCGTGGGTTG+AGG | 0.554577 | 3_1:-44289741 | Msa0358730:CDS |
| AGTTCTCTATGAAAGGTATG+AGG | 0.559341 | 3_1:-44287556 | Msa0358730:CDS |
| TGTCGACAAGGTTGTGAAGG+AGG | 0.569674 | 3_1:+44290363 | None:intergenic |
| CTGGATGCTGGTGTGCTCAA+AGG | 0.572299 | 3_1:-44287474 | Msa0358730:CDS |
| ATGTGTCGACAAGGTTGTGA+AGG | 0.609913 | 3_1:+44290360 | None:intergenic |
| GCAACACGAGGTACTTGAGA+TGG | 0.628239 | 3_1:+44289808 | None:intergenic |
| ATCGGAAATGAGGTTAACCG+TGG | 0.634795 | 3_1:-44289748 | Msa0358730:CDS |
| TGGTTGAAGGGAATAAGTAG+GGG | 0.650194 | 3_1:-44287397 | Msa0358730:three_prime_UTR |
| CTTGAAGAAACCTCAACCCA+CGG | 0.663353 | 3_1:+44289731 | None:intergenic |
| TCGGAAATGAGGTTAACCGT+GGG | 0.683014 | 3_1:-44289747 | Msa0358730:CDS |
| GGTTGAAGGGAATAAGTAGG+GGG | 0.683484 | 3_1:-44287396 | Msa0358730:three_prime_UTR |
| TGTCCGATAATGTGTCGACA+AGG | 0.693508 | 3_1:+44290351 | None:intergenic |
| TCTTCTGGGACAGCAACACG+AGG | 0.706178 | 3_1:+44289796 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAGATTTCTA+TGG | - | chr3_1:44287673-44287692 | Msa0358730:intron | 10.0% |
| !!! | TTTTTTTTTATGTATGATTA+TGG | - | chr3_1:44287856-44287875 | Msa0358730:intron | 10.0% |
| !!! | TTTCTTTTTATTTTATCTTT+TGG | - | chr3_1:44289431-44289450 | Msa0358730:intron | 10.0% |
| !!! | ATTTTGCTTATATTTTGAAA+CGG | - | chr3_1:44287809-44287828 | Msa0358730:intron | 15.0% |
| !!! | AATCAAATTTTTTAATGATC+TGG | + | chr3_1:44290486-44290505 | None:intergenic | 15.0% |
| !!! | GTAGAAATAAATATTTTCTA+AGG | + | chr3_1:44291026-44291045 | None:intergenic | 15.0% |
| !! | TTTATCCTTATGTAAATTAT+TGG | - | chr3_1:44292150-44292169 | Msa0358730:intron | 15.0% |
| !!! | AGTAAATTTTCATTTGAAAA+TGG | - | chr3_1:44292359-44292378 | Msa0358730:five_prime_UTR | 15.0% |
| !!! | TATCATATCTTTGTTATTCA+TGG | - | chr3_1:44287396-44287415 | Msa0358730:three_prime_UTR | 20.0% |
| !!! | TTTATACAGTGAAATGTTTT+TGG | - | chr3_1:44287480-44287499 | Msa0358730:CDS | 20.0% |
| !!! | TGTTTGCTTATATTTTGAAA+CGG | + | chr3_1:44287734-44287753 | None:intergenic | 20.0% |
| !!! | CTTTAATTTAATGATGTATG+TGG | + | chr3_1:44287786-44287805 | None:intergenic | 20.0% |
| !! | TATCTATTTATCCATGTATT+TGG | - | chr3_1:44287905-44287924 | Msa0358730:intron | 20.0% |
| !! | AAAGAATATATCCAAATACA+TGG | + | chr3_1:44287919-44287938 | None:intergenic | 20.0% |
| !!! | TTTTTTGCCTTTTGTTTTTT+TGG | - | chr3_1:44288157-44288176 | Msa0358730:intron | 20.0% |
| !!! | TTAGTGCTATGATTTTTTAA+TGG | - | chr3_1:44288328-44288347 | Msa0358730:intron | 20.0% |
| !! | AATGCAAGTTAAAATTAATC+AGG | + | chr3_1:44288565-44288584 | None:intergenic | 20.0% |
| !!! | TCCTATTTTTTTGTACTTTT+CGG | - | chr3_1:44288605-44288624 | Msa0358730:intron | 20.0% |
| !! | CAAATTTATCAAGTTTATCA+GGG | + | chr3_1:44288921-44288940 | None:intergenic | 20.0% |
| !! | TCAAATTTATCAAGTTTATC+AGG | + | chr3_1:44288922-44288941 | None:intergenic | 20.0% |
| !!! | TTCTCTTGTTTTAATTTATG+TGG | - | chr3_1:44289680-44289699 | Msa0358730:intron | 20.0% |
| !! | GTTGAAAATTTCAAAAGAAA+AGG | + | chr3_1:44290015-44290034 | None:intergenic | 20.0% |
| !!! | TTCTTTTATGCTTTAAAATG+AGG | + | chr3_1:44290315-44290334 | None:intergenic | 20.0% |
| !!! | TCATTTTAAAGCATAAAAGA+AGG | - | chr3_1:44290314-44290333 | Msa0358730:CDS | 20.0% |
| !!! | ATTTAATTTATATACATCGC+CGG | - | chr3_1:44290423-44290442 | Msa0358730:intron | 20.0% |
| !! | TTCTAAATCACACATATAAT+TGG | - | chr3_1:44290520-44290539 | Msa0358730:intron | 20.0% |
| !!! | CAACTAATCTCTTTTTATAT+GGG | + | chr3_1:44290707-44290726 | None:intergenic | 20.0% |
| !! | AATTACATGTGCAAATATTT+GGG | + | chr3_1:44291259-44291278 | None:intergenic | 20.0% |
| !! | TAATTACATGTGCAAATATT+TGG | + | chr3_1:44291260-44291279 | None:intergenic | 20.0% |
| !! | TTCTTAAAAAGACATGATTT+CGG | - | chr3_1:44291309-44291328 | Msa0358730:intron | 20.0% |
| !!! | AAACTTTTTTTCTTCAAATG+TGG | - | chr3_1:44291354-44291373 | Msa0358730:intron | 20.0% |
| !!! | TCATCTACAAATATTTTACA+AGG | + | chr3_1:44291612-44291631 | None:intergenic | 20.0% |
| !!! | CTTCACTTTTAATTACAAAA+CGG | + | chr3_1:44291674-44291693 | None:intergenic | 20.0% |
| ! | ACGAAAATGGAAAAATGAAT+GGG | + | chr3_1:44287287-44287306 | None:intergenic | 25.0% |
| ! | AACGAAAATGGAAAAATGAA+TGG | + | chr3_1:44287288-44287307 | None:intergenic | 25.0% |
| ! | TAAGCAAACTAAATGAACAA+AGG | + | chr3_1:44287430-44287449 | None:intergenic | 25.0% |
| !!! | TGTTCATTTAGTTTGCTTAT+TGG | - | chr3_1:44287431-44287450 | Msa0358730:exon | 25.0% |
| !!! | GTTCATTTAGTTTGCTTATT+GGG | - | chr3_1:44287432-44287451 | Msa0358730:exon | 25.0% |
| !!! | GATTATTTTGTTGTGTTAAC+CGG | - | chr3_1:44287502-44287521 | Msa0358730:CDS | 25.0% |
| !!! | ATTATTTTGTTGTGTTAACC+GGG | - | chr3_1:44287503-44287522 | Msa0358730:CDS | 25.0% |
| ! | GGATATATTCTTTATTGTGT+TGG | - | chr3_1:44287926-44287945 | Msa0358730:intron | 25.0% |
| !!! | TTCTTTATTGTGTTGGTTTT+TGG | - | chr3_1:44287933-44287952 | Msa0358730:intron | 25.0% |
| ! | CAATGCCTAAAAAATATGTA+TGG | + | chr3_1:44288226-44288245 | None:intergenic | 25.0% |
| !! | TATAATTGACTTATCCTCTT+GGG | - | chr3_1:44288497-44288516 | Msa0358730:intron | 25.0% |
| !!! | TTAATGTTTTATGGTTAGCT+AGG | - | chr3_1:44288523-44288542 | Msa0358730:intron | 25.0% |
| !!! | ATTTTAACTTGCATTTGATC+TGG | - | chr3_1:44288570-44288589 | Msa0358730:intron | 25.0% |
| !! | GAAAAGTACAAAAAAATAGG+AGG | + | chr3_1:44288606-44288625 | None:intergenic | 25.0% |
| !! | ACCGAAAAGTACAAAAAAAT+AGG | + | chr3_1:44288609-44288628 | None:intergenic | 25.0% |
| !!! | TCAAAGAAGGATGATTTTTT+TGG | + | chr3_1:44289249-44289268 | None:intergenic | 25.0% |
| ! | AAAAAAATCATCCTTCTTTG+AGG | - | chr3_1:44289248-44289267 | Msa0358730:intron | 25.0% |
| !!! | ATTTCTGCTAGTTTTTTAAC+TGG | - | chr3_1:44289501-44289520 | Msa0358730:intron | 25.0% |
| ! | AATTGATTAAAAAGCAAGCA+CGG | + | chr3_1:44289992-44290011 | None:intergenic | 25.0% |
| ! | ACATGTTATTGATATTGTCA+TGG | - | chr3_1:44290054-44290073 | Msa0358730:CDS | 25.0% |
| ! | TTCAACATTCTATCTGTATT+GGG | + | chr3_1:44290629-44290648 | None:intergenic | 25.0% |
| ! | TTTCAACATTCTATCTGTAT+TGG | + | chr3_1:44290630-44290649 | None:intergenic | 25.0% |
| ! | TAGAATGTTGAAAAGAATGT+CGG | - | chr3_1:44290637-44290656 | Msa0358730:intron | 25.0% |
| !! | AATCTCTTTTTATATGGGAT+CGG | + | chr3_1:44290702-44290721 | None:intergenic | 25.0% |
| !! | CCAACTAATCTCTTTTTATA+TGG | + | chr3_1:44290708-44290727 | None:intergenic | 25.0% |
| ! | CCATATAAAAAGAGATTAGT+TGG | - | chr3_1:44290705-44290724 | Msa0358730:intron | 25.0% |
| ! | TTGACACTTAATATTATAGC+AGG | + | chr3_1:44290862-44290881 | None:intergenic | 25.0% |
| ! | TGCTATAATATTAAGTGTCA+AGG | - | chr3_1:44290861-44290880 | Msa0358730:intron | 25.0% |
| !! | GTCAAAAATGATATGTTTTG+TGG | - | chr3_1:44290899-44290918 | Msa0358730:intron | 25.0% |
| !!! | TTTTTGACTGTCATCTATAT+TGG | - | chr3_1:44291168-44291187 | Msa0358730:intron | 25.0% |
| ! | ATTACATGTGCAAATATTTG+GGG | + | chr3_1:44291258-44291277 | None:intergenic | 25.0% |
| ! | TATTTGCACATGTAATTAAG+AGG | - | chr3_1:44291262-44291281 | Msa0358730:intron | 25.0% |
| ! | ATTTGCACATGTAATTAAGA+GGG | - | chr3_1:44291263-44291282 | Msa0358730:intron | 25.0% |
| !!! | ATGTCTTTTTAAGAAATGTG+GGG | + | chr3_1:44291304-44291323 | None:intergenic | 25.0% |
| !!! | CATGTCTTTTTAAGAAATGT+GGG | + | chr3_1:44291305-44291324 | None:intergenic | 25.0% |
| !!! | TCATGTCTTTTTAAGAAATG+TGG | + | chr3_1:44291306-44291325 | None:intergenic | 25.0% |
| ! | AGATGAAATACTATGAAAAC+AGG | - | chr3_1:44291626-44291645 | Msa0358730:intron | 25.0% |
| ! | TTGTAATTAAAAGTGAAGAC+TGG | - | chr3_1:44291676-44291695 | Msa0358730:intron | 25.0% |
| ! | TAGCTGAAGCATAAAAATAT+GGG | + | chr3_1:44291732-44291751 | None:intergenic | 25.0% |
| !! | CTATAGTTCAACATATTTTC+AGG | + | chr3_1:44291774-44291793 | None:intergenic | 25.0% |
| ! | TCTAAATTATGAACAAATGC+TGG | - | chr3_1:44291910-44291929 | Msa0358730:intron | 25.0% |
| ! | CCAATCCAATAATTTACATA+AGG | + | chr3_1:44292158-44292177 | None:intergenic | 25.0% |
| ! | CCTTATGTAAATTATTGGAT+TGG | - | chr3_1:44292155-44292174 | Msa0358730:intron | 25.0% |
| !!! | TAAATTATTGGATTGGTTGA+AGG | - | chr3_1:44292162-44292181 | Msa0358730:intron | 25.0% |
| !!! | AAATTATTGGATTGGTTGAA+GGG | - | chr3_1:44292163-44292182 | Msa0358730:intron | 25.0% |
| AATGGAAAAATGAATGGGAT+TGG | + | chr3_1:44287282-44287301 | None:intergenic | 30.0% | |
| ATTGGGTTTCATTTATTTCC+TGG | - | chr3_1:44287449-44287468 | Msa0358730:CDS | 30.0% | |
| TTGGGTTTCATTTATTTCCT+GGG | - | chr3_1:44287450-44287469 | Msa0358730:CDS | 30.0% | |
| !! | TTGTCCTTTTGATTGATTGA+TGG | - | chr3_1:44287609-44287628 | Msa0358730:intron | 30.0% |
| AGGAAAAGCAAAAAGGAAAA+AGG | + | chr3_1:44287701-44287720 | None:intergenic | 30.0% | |
| GAGTAATAGGAAAAGCAAAA+AGG | + | chr3_1:44287708-44287727 | None:intergenic | 30.0% | |
| GATGTATGTGGTTCATAATA+TGG | + | chr3_1:44287774-44287793 | None:intergenic | 30.0% | |
| !!! | TTGCTTATATTTTGAAACGG+TGG | - | chr3_1:44287812-44287831 | Msa0358730:intron | 30.0% |
| !!! | TGCTTATATTTTGAAACGGT+GGG | - | chr3_1:44287813-44287832 | Msa0358730:intron | 30.0% |
| AATTGACTAAGTGTGTGTTT+GGG | - | chr3_1:44287978-44287997 | Msa0358730:intron | 30.0% | |
| !! | GCTTTTCTTTTTTTCACGTT+GGG | + | chr3_1:44288041-44288060 | None:intergenic | 30.0% |
| !! | AGCTTTTCTTTTTTTCACGT+TGG | + | chr3_1:44288042-44288061 | None:intergenic | 30.0% |
| ! | CATTAGAAAGAAAGTACGTT+TGG | - | chr3_1:44288073-44288092 | Msa0358730:intron | 30.0% |
| !!! | TTTGCCTTTTGTTTTTTTGG+TGG | - | chr3_1:44288160-44288179 | Msa0358730:intron | 30.0% |
| TAAAAAATATGTATGGTCCG+GGG | + | chr3_1:44288219-44288238 | None:intergenic | 30.0% | |
| CTAAAAAATATGTATGGTCC+GGG | + | chr3_1:44288220-44288239 | None:intergenic | 30.0% | |
| CCTAAAAAATATGTATGGTC+CGG | + | chr3_1:44288221-44288240 | None:intergenic | 30.0% | |
| CCTTCAATTGATATCACAAA+AGG | + | chr3_1:44288289-44288308 | None:intergenic | 30.0% | |
| ! | CCTTTTGTGATATCAATTGA+AGG | - | chr3_1:44288286-44288305 | Msa0358730:intron | 30.0% |
| ! | CTATAATTGACTTATCCTCT+TGG | - | chr3_1:44288496-44288515 | Msa0358730:intron | 30.0% |
| TAAAACATTAATAGCCCAAG+AGG | + | chr3_1:44288514-44288533 | None:intergenic | 30.0% | |
| ! | CTTGGGCTATTAATGTTTTA+TGG | - | chr3_1:44288514-44288533 | Msa0358730:intron | 30.0% |
| TCTATATCACAATTGAAGCA+AGG | + | chr3_1:44288637-44288656 | None:intergenic | 30.0% | |
| ACAGCGTCATTTCAATTATA+TGG | + | chr3_1:44288848-44288867 | None:intergenic | 30.0% | |
| TGTGACCTACTAGAATTAAT+TGG | - | chr3_1:44288982-44289001 | Msa0358730:intron | 30.0% | |
| GAACACCAATTAATTCTAGT+AGG | + | chr3_1:44288990-44289009 | None:intergenic | 30.0% | |
| ! | TAGAATTAATTGGTGTTCGA+TGG | - | chr3_1:44288992-44289011 | Msa0358730:intron | 30.0% |
| ATCATTTATGAGAACACAAG+AGG | + | chr3_1:44289072-44289091 | None:intergenic | 30.0% | |
| ! | TTTTCTGCTGTGATTTTATC+AGG | + | chr3_1:44289189-44289208 | None:intergenic | 30.0% |
| TAACTGGTGCAACAATTATA+TGG | - | chr3_1:44289517-44289536 | Msa0358730:intron | 30.0% | |
| AACTGGTGCAACAATTATAT+GGG | - | chr3_1:44289518-44289537 | Msa0358730:intron | 30.0% | |
| !! | TTATATGGGTGCTATTTGAA+TGG | - | chr3_1:44289532-44289551 | Msa0358730:intron | 30.0% |
| ! | TTCTCTACTATGTTTTGTCT+TGG | - | chr3_1:44289572-44289591 | Msa0358730:intron | 30.0% |
| TGTTCACAAATAACTCTTCT+GGG | + | chr3_1:44289793-44289812 | None:intergenic | 30.0% | |
| ATGTTCACAAATAACTCTTC+TGG | + | chr3_1:44289794-44289813 | None:intergenic | 30.0% | |
| GGTTAACTCTGAATGATAAA+TGG | + | chr3_1:44289945-44289964 | None:intergenic | 30.0% | |
| ACAATGCACATGTTTGATAA+AGG | + | chr3_1:44289966-44289985 | None:intergenic | 30.0% | |
| !! | TGACCTTTTCTTAGTTGATA+TGG | - | chr3_1:44290089-44290108 | Msa0358730:CDS | 30.0% |
| CTACCATATCAACTAAGAAA+AGG | + | chr3_1:44290095-44290114 | None:intergenic | 30.0% | |
| !! | CTTTTCTTAGTTGATATGGT+AGG | - | chr3_1:44290093-44290112 | Msa0358730:CDS | 30.0% |
| TTCATAACATCATACTGCAT+AGG | - | chr3_1:44290171-44290190 | Msa0358730:intron | 30.0% | |
| TAACTTCTATATCGCAAAGA+TGG | + | chr3_1:44290224-44290243 | None:intergenic | 30.0% | |
| TGACAAGGATATTGAAAGAT+GGG | + | chr3_1:44290287-44290306 | None:intergenic | 30.0% | |
| TAAAATGAGGAAAAGTGACA+AGG | + | chr3_1:44290302-44290321 | None:intergenic | 30.0% | |
| TTAAAGCATAAAAGAAGGCA+TGG | - | chr3_1:44290319-44290338 | Msa0358730:CDS | 30.0% | |
| AAATCCCTTAGTAAATAACC+TGG | + | chr3_1:44290407-44290426 | None:intergenic | 30.0% | |
| AGTGTAAAAAACCTTTACAC+CGG | + | chr3_1:44290445-44290464 | None:intergenic | 30.0% | |
| ! | TGTTAAACGTTTTACACTGA+CGG | - | chr3_1:44290560-44290579 | Msa0358730:intron | 30.0% |
| TCAAAAGATGAAAAGAAAGC+CGG | + | chr3_1:44291199-44291218 | None:intergenic | 30.0% | |
| ! | GCTTTCTTTTCATCTTTTGA+TGG | - | chr3_1:44291199-44291218 | Msa0358730:intron | 30.0% |
| !! | TGTCTTTTTAAGAAATGTGG+GGG | + | chr3_1:44291303-44291322 | None:intergenic | 30.0% |
| !!! | TTCTGAAATACTTTTGCAAG+TGG | - | chr3_1:44291379-44291398 | Msa0358730:intron | 30.0% |
| !! | TCTGAAATACTTTTGCAAGT+GGG | - | chr3_1:44291380-44291399 | Msa0358730:intron | 30.0% |
| ! | ATATGCTCTAGTTCATGAAA+TGG | - | chr3_1:44291452-44291471 | Msa0358730:intron | 30.0% |
| ! | ACTGGTCTGCAAAAAATATA+TGG | - | chr3_1:44291553-44291572 | Msa0358730:intron | 30.0% |
| CTAGCTGAAGCATAAAAATA+TGG | + | chr3_1:44291733-44291752 | None:intergenic | 30.0% | |
| ! | TCAGGAGAAAAGTTTTCATA+GGG | + | chr3_1:44291756-44291775 | None:intergenic | 30.0% |
| ! | TTCAGGAGAAAAGTTTTCAT+AGG | + | chr3_1:44291757-44291776 | None:intergenic | 30.0% |
| TTATCAGAAAGAACTAAACC+AGG | + | chr3_1:44291863-44291882 | None:intergenic | 30.0% | |
| ! | GAAACAAATGTTTTGTCGAA+AGG | - | chr3_1:44291969-44291988 | Msa0358730:intron | 30.0% |
| GCAAAATAACTATAGAAAGC+TGG | - | chr3_1:44292079-44292098 | Msa0358730:intron | 30.0% | |
| TACAAGATCTCTTCTATGAA+TGG | - | chr3_1:44292206-44292225 | Msa0358730:intron | 30.0% | |
| TGGGTTTCATTTATTTCCTG+GGG | - | chr3_1:44287451-44287470 | Msa0358730:CDS | 35.0% | |
| TCATTTATTTCCTGGGGTTT+CGG | - | chr3_1:44287457-44287476 | Msa0358730:CDS | 35.0% | |
| CAGAGATTAATCCTTTGTGT+CGG | - | chr3_1:44287544-44287563 | Msa0358730:CDS | 35.0% | |
| ACTGCCATCAATCAATCAAA+AGG | + | chr3_1:44287616-44287635 | None:intergenic | 35.0% | |
| ! | TTTGAAACGGAGTGAGTAAT+AGG | + | chr3_1:44287721-44287740 | None:intergenic | 35.0% |
| !! | TGGCTTGTTATTTCTTCTTC+TGG | - | chr3_1:44287876-44287895 | Msa0358730:intron | 35.0% |
| !! | GGCTTGTTATTTCTTCTTCT+GGG | - | chr3_1:44287877-44287896 | Msa0358730:intron | 35.0% |
| CAATTGACTAAGTGTGTGTT+TGG | - | chr3_1:44287977-44287996 | Msa0358730:intron | 35.0% | |
| ATTGACTAAGTGTGTGTTTG+GGG | - | chr3_1:44287979-44287998 | Msa0358730:intron | 35.0% | |
| ! | GTTCAAACGTAACTTTTTGG+TGG | + | chr3_1:44288014-44288033 | None:intergenic | 35.0% |
| ! | GGTGTTCAAACGTAACTTTT+TGG | + | chr3_1:44288017-44288036 | None:intergenic | 35.0% |
| !!! | TTTCTTTTTTTCACGTTGGG+AGG | + | chr3_1:44288038-44288057 | None:intergenic | 35.0% |
| !!! | CCGGACCATACATATTTTTT+AGG | - | chr3_1:44288218-44288237 | Msa0358730:intron | 35.0% |
| ATCACAATTGAAGCAAGGAA+TGG | + | chr3_1:44288632-44288651 | None:intergenic | 35.0% | |
| ! | TGATTTGTCTTCCTCAAAGA+AGG | + | chr3_1:44289262-44289281 | None:intergenic | 35.0% |
| ! | AAACCTGTACACCATCTTTT+AGG | - | chr3_1:44289324-44289343 | Msa0358730:intron | 35.0% |
| ! | ATTTTCCACCTCCTAAAAGA+TGG | + | chr3_1:44289338-44289357 | None:intergenic | 35.0% |
| TTTAGGAGGTGGAAAATGTA+CGG | - | chr3_1:44289341-44289360 | Msa0358730:intron | 35.0% | |
| !! | CTATGTTTTGTCTTGGTTCT+TGG | - | chr3_1:44289579-44289598 | Msa0358730:intron | 35.0% |
| ATGCTTCTAGCATGTTTAAC+AGG | - | chr3_1:44289628-44289647 | Msa0358730:intron | 35.0% | |
| GTGAACATTGCAACTGTAAT+CGG | - | chr3_1:44289806-44289825 | Msa0358730:CDS | 35.0% | |
| CTTCAAGATGTTTCTTGTGA+AGG | - | chr3_1:44289857-44289876 | Msa0358730:intron | 35.0% | |
| GGATGTCAGCAGAATAAATA+TGG | + | chr3_1:44290203-44290222 | None:intergenic | 35.0% | |
| GAAGTTACTTAAGAGTCGAT+TGG | - | chr3_1:44290237-44290256 | Msa0358730:CDS | 35.0% | |
| ATATTGAAAGATGGGATAGC+TGG | + | chr3_1:44290279-44290298 | None:intergenic | 35.0% | |
| GTGACAAGGATATTGAAAGA+TGG | + | chr3_1:44290288-44290307 | None:intergenic | 35.0% | |
| TTCGTCCAGGTTATTTACTA+AGG | - | chr3_1:44290399-44290418 | Msa0358730:exon | 35.0% | |
| TCGTCCAGGTTATTTACTAA+GGG | - | chr3_1:44290400-44290419 | Msa0358730:exon | 35.0% | |
| ! | CATTATTGTGCAAAGTGTCA+AGG | - | chr3_1:44290962-44290981 | Msa0358730:intron | 35.0% |
| !! | TTTTTAAGAAATGTGGGGGT+GGG | + | chr3_1:44291299-44291318 | None:intergenic | 35.0% |
| AAAAACTGGCATAAGAAAGC+TGG | + | chr3_1:44291579-44291598 | None:intergenic | 35.0% | |
| AAGGACACAGATTGAAAAAC+TGG | + | chr3_1:44291593-44291612 | None:intergenic | 35.0% | |
| ATATGGGTCTCTTTACTTTG+AGG | + | chr3_1:44291716-44291735 | None:intergenic | 35.0% | |
| ATAGTAAGATGCAGAGATGA+AGG | - | chr3_1:44291790-44291809 | Msa0358730:intron | 35.0% | |
| TCATACCTTTCATAGAGAAC+TGG | + | chr3_1:44292017-44292036 | None:intergenic | 35.0% | |
| ! | AGTTCTCTATGAAAGGTATG+AGG | - | chr3_1:44292016-44292035 | Msa0358730:intron | 35.0% |
| ATTGGTTGAAGGGAATAAGT+AGG | - | chr3_1:44292173-44292192 | Msa0358730:intron | 35.0% | |
| TTGGTTGAAGGGAATAAGTA+GGG | - | chr3_1:44292174-44292193 | Msa0358730:intron | 35.0% | |
| ! | GGAAGTACAGAGAACGAAAA+TGG | + | chr3_1:44287300-44287319 | None:intergenic | 40.0% |
| AGAGAGAGAGAGAAACAGAA+GGG | + | chr3_1:44287321-44287340 | None:intergenic | 40.0% | |
| AACCAAACAATCACACGTTG+CGG | + | chr3_1:44287576-44287595 | None:intergenic | 40.0% | |
| ! | GAGAAGCTTAGTGCTTTGTT+CGG | + | chr3_1:44288117-44288136 | None:intergenic | 40.0% |
| !!! | GCCTTTTGTTTTTTTGGTGG+TGG | - | chr3_1:44288163-44288182 | Msa0358730:intron | 40.0% |
| GCCACCACCAAAAAAACAAA+AGG | + | chr3_1:44288167-44288186 | None:intergenic | 40.0% | |
| !!! | TTTGTTTTTTTGGTGGTGGC+CGG | - | chr3_1:44288167-44288186 | Msa0358730:intron | 40.0% |
| TGAGCTTAGCTCAATTGGTA+TGG | + | chr3_1:44288250-44288269 | None:intergenic | 40.0% | |
| ATGAAACACCGACACAAACA+CGG | - | chr3_1:44288660-44288679 | Msa0358730:intron | 40.0% | |
| TCTGATATCCGTGTTTGTGT+CGG | + | chr3_1:44288671-44288690 | None:intergenic | 40.0% | |
| ! | ATGCTTCCAATCTGAAGTGT+CGG | - | chr3_1:44288798-44288817 | Msa0358730:intron | 40.0% |
| !! | GTCTTTGATGATGTGCTTTC+TGG | - | chr3_1:44289139-44289158 | Msa0358730:intron | 40.0% |
| CAACCTTGTCGACACATTAT+CGG | - | chr3_1:44289218-44289237 | Msa0358730:intron | 40.0% | |
| !! | GGCTTTAAATGCTATAGCTG+CGG | - | chr3_1:44289452-44289471 | Msa0358730:intron | 40.0% |
| ACCATAGAAATTGAGCAAGC+AGG | + | chr3_1:44289605-44289624 | None:intergenic | 40.0% | |
| TGCAACTGTAATCGGAAATG+AGG | - | chr3_1:44289814-44289833 | Msa0358730:CDS | 40.0% | |
| TGATTAAAAAGCAAGCACGG+AGG | + | chr3_1:44289989-44290008 | None:intergenic | 40.0% | |
| ! | TGTGCACAGTATTTTGTCGT+AGG | - | chr3_1:44290132-44290151 | Msa0358730:intron | 40.0% |
| ! | AAAGATGGGATAGCTGGTTT+CGG | + | chr3_1:44290273-44290292 | None:intergenic | 40.0% |
| ! | GAAGGCATGGTGTATGTAAA+TGG | - | chr3_1:44290332-44290351 | Msa0358730:CDS | 40.0% |
| TATATACATCGCCGGTGTAA+AGG | - | chr3_1:44290431-44290450 | Msa0358730:intron | 40.0% | |
| ATGAGGTCTGCTAATACACT+AGG | - | chr3_1:44290835-44290854 | Msa0358730:intron | 40.0% | |
| ! | GCCTCATTTTGTCACTGTTA+TGG | - | chr3_1:44290926-44290945 | Msa0358730:intron | 40.0% |
| GCCATAACAGTGACAAAATG+AGG | + | chr3_1:44290930-44290949 | None:intergenic | 40.0% | |
| TGAAAGTTGAAACACTCTCC+AGG | - | chr3_1:44291098-44291117 | Msa0358730:intron | 40.0% | |
| GTCATCTATATTGGTGAGTC+CGG | - | chr3_1:44291177-44291196 | Msa0358730:intron | 40.0% | |
| !! | CTTTTTAAGAAATGTGGGGG+TGG | + | chr3_1:44291300-44291319 | None:intergenic | 40.0% |
| GGAAGATTTCCTCCCTATTA+AGG | - | chr3_1:44291401-44291420 | Msa0358730:intron | 40.0% | |
| ATGGGGAAGCAACCTTAATA+GGG | + | chr3_1:44291416-44291435 | None:intergenic | 40.0% | |
| TATGGGGAAGCAACCTTAAT+AGG | + | chr3_1:44291417-44291436 | None:intergenic | 40.0% | |
| ATACTGCTAGTGCTAGGTAT+GGG | + | chr3_1:44291434-44291453 | None:intergenic | 40.0% | |
| TATACTGCTAGTGCTAGGTA+TGG | + | chr3_1:44291435-44291454 | None:intergenic | 40.0% | |
| CAGGAAGCAGATTGAAAACA+AGG | - | chr3_1:44291645-44291664 | Msa0358730:intron | 40.0% | |
| CACTTCCAGTTCTCTATGAA+AGG | - | chr3_1:44292009-44292028 | Msa0358730:intron | 40.0% | |
| AGTTGACAACTTTGTGCTCA+AGG | - | chr3_1:44292043-44292062 | Msa0358730:intron | 40.0% | |
| AACTTTGTGCTCAAGGTCTT+TGG | - | chr3_1:44292050-44292069 | Msa0358730:intron | 40.0% | |
| AACTATAGAAAGCTGGATGC+TGG | - | chr3_1:44292086-44292105 | Msa0358730:intron | 40.0% | |
| TGGTTGAAGGGAATAAGTAG+GGG | - | chr3_1:44292175-44292194 | Msa0358730:intron | 40.0% | |
| GAGAGAGAGAGAGAAACAGA+AGG | + | chr3_1:44287322-44287341 | None:intergenic | 45.0% | |
| ACTGTATAAACCGAAACCCC+AGG | + | chr3_1:44287470-44287489 | None:intergenic | 45.0% | |
| ACTAAGCTTCTCTTGTCTGC+TGG | - | chr3_1:44288125-44288144 | Msa0358730:intron | 45.0% | |
| !!! | TTGTTTTTTTGGTGGTGGCC+GGG | - | chr3_1:44288168-44288187 | Msa0358730:intron | 45.0% |
| TGTCAGATACCGACACATGT+TGG | - | chr3_1:44288764-44288783 | Msa0358730:intron | 45.0% | |
| ! | ATGTGTCGACAAGGTTGTGA+AGG | + | chr3_1:44289215-44289234 | None:intergenic | 45.0% |
| ! | TGTCCGATAATGTGTCGACA+AGG | + | chr3_1:44289224-44289243 | None:intergenic | 45.0% |
| TCCGAGATCAACAGACTGTT+CGG | - | chr3_1:44289294-44289313 | Msa0358730:intron | 45.0% | |
| TCCGAACAGTCTGTTGATCT+CGG | + | chr3_1:44289298-44289317 | None:intergenic | 45.0% | |
| CCTCCTAAAAGATGGTGTAC+AGG | + | chr3_1:44289330-44289349 | None:intergenic | 45.0% | |
| ! | CCTGTACACCATCTTTTAGG+AGG | - | chr3_1:44289327-44289346 | Msa0358730:intron | 45.0% |
| !! | GTACACCATCTTTTAGGAGG+TGG | - | chr3_1:44289330-44289349 | Msa0358730:intron | 45.0% |
| ! | TAGCTGCGGATGTTTTGCTA+TGG | - | chr3_1:44289466-44289485 | Msa0358730:intron | 45.0% |
| GCCTGCTTGCTCAATTTCTA+TGG | - | chr3_1:44289601-44289620 | Msa0358730:intron | 45.0% | |
| ATCGGAAATGAGGTTAACCG+TGG | - | chr3_1:44289824-44289843 | Msa0358730:intron | 45.0% | |
| TCGGAAATGAGGTTAACCGT+GGG | - | chr3_1:44289825-44289844 | Msa0358730:intron | 45.0% | |
| CTTGAAGAAACCTCAACCCA+CGG | + | chr3_1:44289844-44289863 | None:intergenic | 45.0% | |
| ! | TGTGCATAAAGTGTTCGTCC+AGG | - | chr3_1:44290386-44290405 | Msa0358730:CDS | 45.0% |
| TCTATGCCTCCACATACGTT+GGG | + | chr3_1:44290785-44290804 | None:intergenic | 45.0% | |
| TCCAGGTTGTCGTAAGTTTG+TGG | - | chr3_1:44291115-44291134 | Msa0358730:intron | 45.0% | |
| CCAGGTTGTCGTAAGTTTGT+GGG | - | chr3_1:44291116-44291135 | Msa0358730:intron | 45.0% | |
| TACTGCTAGTGCTAGGTATG+GGG | + | chr3_1:44291433-44291452 | None:intergenic | 45.0% | |
| GAGCATATACTGCTAGTGCT+AGG | + | chr3_1:44291440-44291459 | None:intergenic | 45.0% | |
| ACAAGTCGATAACTCTCAGG+GGG | + | chr3_1:44291483-44291502 | None:intergenic | 45.0% | |
| CACAAGTCGATAACTCTCAG+GGG | + | chr3_1:44291484-44291503 | None:intergenic | 45.0% | |
| CCACAAGTCGATAACTCTCA+GGG | + | chr3_1:44291485-44291504 | None:intergenic | 45.0% | |
| ACCACAAGTCGATAACTCTC+AGG | + | chr3_1:44291486-44291505 | None:intergenic | 45.0% | |
| CTTACCTAGAGCCCCAAAAA+GGG | - | chr3_1:44291520-44291539 | Msa0358730:intron | 45.0% | |
| GGTTGAAGGGAATAAGTAGG+GGG | - | chr3_1:44292176-44292195 | Msa0358730:intron | 45.0% | |
| CTCTCTCTCTGCTTAGTCTC+TGG | - | chr3_1:44287335-44287354 | Msa0358730:three_prime_UTR | 50.0% | |
| TAGTTGCACGCAGAGATACC+CGG | + | chr3_1:44287524-44287543 | None:intergenic | 50.0% | |
| ! | TGCGGTCTTATCCGACACAA+AGG | + | chr3_1:44287558-44287577 | None:intergenic | 50.0% |
| GACCGCAACGTGTGATTGTT+TGG | - | chr3_1:44287571-44287590 | Msa0358730:CDS | 50.0% | |
| ! | TAGTGCTTTGTTCGGACCCA+CGG | + | chr3_1:44288109-44288128 | None:intergenic | 50.0% |
| !!! | TGTTTTTTTGGTGGTGGCCG+GGG | - | chr3_1:44288169-44288188 | Msa0358730:intron | 50.0% |
| CCTCGTGAGCTTAGCTCAAT+TGG | + | chr3_1:44288255-44288274 | None:intergenic | 50.0% | |
| CCAATTGAGCTAAGCTCACG+AGG | - | chr3_1:44288252-44288271 | Msa0358730:intron | 50.0% | |
| TACCGACACATGTTGGACAG+AGG | - | chr3_1:44288771-44288790 | Msa0358730:intron | 50.0% | |
| GTCCTCTGTCCAACATGTGT+CGG | + | chr3_1:44288776-44288795 | None:intergenic | 50.0% | |
| !! | GTAGCACCGACACTTCAGAT+TGG | + | chr3_1:44288807-44288826 | None:intergenic | 50.0% |
| !! | TCGGTGCTACATGAGCAGAA+AGG | - | chr3_1:44288817-44288836 | Msa0358730:intron | 50.0% |
| TGTCGACAAGGTTGTGAAGG+AGG | + | chr3_1:44289212-44289231 | None:intergenic | 50.0% | |
| !! | CTGCGGATGTTTTGCTATGG+AGG | - | chr3_1:44289469-44289488 | Msa0358730:intron | 50.0% |
| ! | GCAACACGAGGTACTTGAGA+TGG | + | chr3_1:44289767-44289786 | None:intergenic | 50.0% |
| ! | ATGAGGTTAACCGTGGGTTG+AGG | - | chr3_1:44289831-44289850 | Msa0358730:intron | 50.0% |
| ACTAAATCTCACGAGCCAGC+TGG | - | chr3_1:44290754-44290773 | Msa0358730:intron | 50.0% | |
| CTAAATCTCACGAGCCAGCT+GGG | - | chr3_1:44290755-44290774 | Msa0358730:intron | 50.0% | |
| CTCTATGCCTCCACATACGT+TGG | + | chr3_1:44290786-44290805 | None:intergenic | 50.0% | |
| ! | TGGAGGCATAGAGCTTACTC+CGG | - | chr3_1:44290793-44290812 | Msa0358730:intron | 50.0% |
| TGTTGACCTCTGTTCGGATG+AGG | - | chr3_1:44290818-44290837 | Msa0358730:intron | 50.0% | |
| CCCACAAACTTACGACAACC+TGG | + | chr3_1:44291119-44291138 | None:intergenic | 50.0% | |
| GTTGTCGTAAGTTTGTGGGC+TGG | - | chr3_1:44291120-44291139 | Msa0358730:intron | 50.0% | |
| !! | TTGTGGGCTGGTTCAGTGAT+CGG | - | chr3_1:44291132-44291151 | Msa0358730:intron | 50.0% |
| GGGAAGCAACCTTAATAGGG+AGG | + | chr3_1:44291413-44291432 | None:intergenic | 50.0% | |
| !! | CCCTGAGAGTTATCGACTTG+TGG | - | chr3_1:44291482-44291501 | Msa0358730:intron | 50.0% |
| GCTTACCTAGAGCCCCAAAA+AGG | - | chr3_1:44291519-44291538 | Msa0358730:intron | 50.0% | |
| ! | TTTTTGCAGACCAGTGCTCG+TGG | + | chr3_1:44291548-44291567 | None:intergenic | 50.0% |
| CCAGGCGTGTCTTTGTGAAT+AGG | + | chr3_1:44291845-44291864 | None:intergenic | 50.0% | |
| CCTATTCACAAAGACACGCC+TGG | - | chr3_1:44291842-44291861 | Msa0358730:intron | 50.0% | |
| TATGGTCCGGGGTTCAAACC+CGG | + | chr3_1:44288208-44288227 | None:intergenic | 55.0% | |
| CTGTTGATCTCGGAGCTCAC+TGG | + | chr3_1:44289288-44289307 | None:intergenic | 55.0% | |
| !! | TCTTCTGGGACAGCAACACG+AGG | + | chr3_1:44289779-44289798 | None:intergenic | 55.0% |
| CCGAACAGAGGTCAACACAC+CGG | + | chr3_1:44290815-44290834 | None:intergenic | 55.0% | |
| ! | CCGGTGTGTTGACCTCTGTT+CGG | - | chr3_1:44290812-44290831 | Msa0358730:intron | 55.0% |
| AGCAGACCTCATCCGAACAG+AGG | + | chr3_1:44290827-44290846 | None:intergenic | 55.0% | |
| !! | TGTGGGCTGGTTCAGTGATC+GGG | - | chr3_1:44291133-44291152 | Msa0358730:intron | 55.0% |
| CTGGTTCAGTGATCGGGAGT+TGG | - | chr3_1:44291139-44291158 | Msa0358730:intron | 55.0% | |
| ! | TGCTCGTGGCTCCCTTTTTG+GGG | + | chr3_1:44291534-44291553 | None:intergenic | 55.0% |
| ! | GTGCTCGTGGCTCCCTTTTT+GGG | + | chr3_1:44291535-44291554 | None:intergenic | 55.0% |
| ! | AGTGCTCGTGGCTCCCTTTT+TGG | + | chr3_1:44291536-44291555 | None:intergenic | 55.0% |
| AAAAAGGGAGCCACGAGCAC+TGG | - | chr3_1:44291535-44291554 | Msa0358730:intron | 55.0% | |
| CTGGATGCTGGTGTGCTCAA+AGG | - | chr3_1:44292098-44292117 | Msa0358730:intron | 55.0% | |
| ! | GCTTTGTTCGGACCCACGGT+GGG | + | chr3_1:44288105-44288124 | None:intergenic | 60.0% |
| ! | TGCTTTGTTCGGACCCACGG+TGG | + | chr3_1:44288106-44288125 | None:intergenic | 60.0% |
| !!! | GGCTCCCTTTTTGGGGCTCT+AGG | + | chr3_1:44291527-44291546 | None:intergenic | 60.0% |
| GTTTGGCCCTCTCCCACCGT+GGG | - | chr3_1:44288090-44288109 | Msa0358730:intron | 65.0% | |
| TTCGGACCCACGGTGGGAGA+GGG | + | chr3_1:44288099-44288118 | None:intergenic | 65.0% | |
| TCCGGGGTTCAAACCCGGTC+CGG | + | chr3_1:44288203-44288222 | None:intergenic | 65.0% | |
| ATCTCACGAGCCAGCTGGGC+TGG | - | chr3_1:44290759-44290778 | Msa0358730:intron | 65.0% | |
| ATACGTTGGGCCAGCCCAGC+TGG | + | chr3_1:44290772-44290791 | None:intergenic | 65.0% | |
| !! | CTGGGCTGGCCCAACGTATG+TGG | - | chr3_1:44290773-44290792 | Msa0358730:intron | 65.0% |
| ! | GGCTGGCCCAACGTATGTGG+AGG | - | chr3_1:44290776-44290795 | Msa0358730:intron | 65.0% |
| CGTTTGGCCCTCTCCCACCG+TGG | - | chr3_1:44288089-44288108 | Msa0358730:intron | 70.0% | |
| GTTCGGACCCACGGTGGGAG+AGG | + | chr3_1:44288100-44288119 | None:intergenic | 70.0% | |
| GGTGGCCGGGGTTTGAACCC+CGG | - | chr3_1:44288181-44288200 | Msa0358730:intron | 70.0% | |
| CCGGTCCGGGGTTCAAACCC+CGG | + | chr3_1:44288189-44288208 | None:intergenic | 70.0% | |
| CCGGGGTTTGAACCCCGGAC+CGG | - | chr3_1:44288186-44288205 | Msa0358730:intron | 70.0% | |
| CGGGGTTTGAACCCCGGACC+GGG | - | chr3_1:44288187-44288206 | Msa0358730:intron | 70.0% | |
| CGGGGTTCAAACCCGGTCCG+GGG | + | chr3_1:44288201-44288220 | None:intergenic | 70.0% | |
| CCGGGGTTCAAACCCGGTCC+GGG | + | chr3_1:44288202-44288221 | None:intergenic | 70.0% | |
| CCCGGACCGGGTTTGAACCC+CGG | - | chr3_1:44288199-44288218 | Msa0358730:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 44287201 | 44292393 | 44287201 | ID=Msa0358730;Name=Msa0358730 |
| chr3_1 | mRNA | 44287201 | 44292393 | 44287201 | ID=Msa0358730-mRNA-1;Parent=Msa0358730;Name=Msa0358730-mRNA-1;_AED=0.18;_eAED=0.18;_QI=170|1|1|1|0.8|0.66|6|245|241 |
| chr3_1 | exon | 44287201 | 44287603 | 44287201 | ID=Msa0358730-mRNA-1:exon:7876;Parent=Msa0358730-mRNA-1 |
| chr3_1 | exon | 44288405 | 44288474 | 44288405 | ID=Msa0358730-mRNA-1:exon:7875;Parent=Msa0358730-mRNA-1 |
| chr3_1 | exon | 44289693 | 44289834 | 44289693 | ID=Msa0358730-mRNA-1:exon:7874;Parent=Msa0358730-mRNA-1 |
| chr3_1 | exon | 44289945 | 44290125 | 44289945 | ID=Msa0358730-mRNA-1:exon:7873;Parent=Msa0358730-mRNA-1 |
| chr3_1 | exon | 44290237 | 44290425 | 44290237 | ID=Msa0358730-mRNA-1:exon:7872;Parent=Msa0358730-mRNA-1 |
| chr3_1 | exon | 44292238 | 44292393 | 44292238 | ID=Msa0358730-mRNA-1:exon:7871;Parent=Msa0358730-mRNA-1 |
| chr3_1 | five_prime_UTR | 44292238 | 44292393 | 44292238 | ID=Msa0358730-mRNA-1:five_prime_utr;Parent=Msa0358730-mRNA-1 |
| chr3_1 | five_prime_UTR | 44290412 | 44290425 | 44290412 | ID=Msa0358730-mRNA-1:five_prime_utr;Parent=Msa0358730-mRNA-1 |
| chr3_1 | CDS | 44290237 | 44290411 | 44290237 | ID=Msa0358730-mRNA-1:cds;Parent=Msa0358730-mRNA-1 |
| chr3_1 | CDS | 44289945 | 44290125 | 44289945 | ID=Msa0358730-mRNA-1:cds;Parent=Msa0358730-mRNA-1 |
| chr3_1 | CDS | 44289693 | 44289834 | 44289693 | ID=Msa0358730-mRNA-1:cds;Parent=Msa0358730-mRNA-1 |
| chr3_1 | CDS | 44288405 | 44288474 | 44288405 | ID=Msa0358730-mRNA-1:cds;Parent=Msa0358730-mRNA-1 |
| chr3_1 | CDS | 44287446 | 44287603 | 44287446 | ID=Msa0358730-mRNA-1:cds;Parent=Msa0358730-mRNA-1 |
| chr3_1 | three_prime_UTR | 44287201 | 44287445 | 44287201 | ID=Msa0358730-mRNA-1:three_prime_utr;Parent=Msa0358730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
