Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0407810 | XP_024634879.1 | 73.200 | 250 | 59 | 2 | 1 | 249 | 1 | 243 | 2.76e-124 | 381 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0407810 | A0A396IRP0 | 70.000 | 240 | 64 | 5 | 15 | 250 | 1 | 236 | 3.37e-107 | 318 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0407780 | Msa0407810 | 0.818448 | 1.949577e-52 | -8.615850e-47 |
Msa0407810 | Msa0407890 | 0.820681 | 6.031614e-53 | -8.615850e-47 |
Msa0407810 | Msa0452920 | 0.803758 | 2.991310e-49 | -8.615850e-47 |
Msa0407810 | Msa0452940 | 0.889500 | 2.292181e-73 | -8.615850e-47 |
Msa0407810 | Msa0499480 | 0.896954 | 2.246344e-76 | -8.615850e-47 |
Msa0360540 | Msa0407810 | 0.874878 | 4.785862e-68 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0407810 | MtrunA17_Chr3g0098291 | 70.000 | 240 | 64 | 5 | 15 | 250 | 1 | 236 | 6.48e-111 | 318 |
Msa0407810 | MtrunA17_Chr3g0098521 | 77.124 | 153 | 35 | 0 | 49 | 201 | 1 | 153 | 2.68e-84 | 248 |
Msa0407810 | MtrunA17_Chr3g0098491 | 76.159 | 151 | 36 | 0 | 49 | 199 | 1 | 151 | 3.55e-81 | 240 |
Msa0407810 | MtrunA17_Chr3g0102001 | 49.772 | 219 | 97 | 4 | 43 | 249 | 21 | 238 | 2.10e-57 | 194 |
Msa0407810 | MtrunA17_Chr3g0098541 | 52.406 | 187 | 80 | 2 | 72 | 249 | 5 | 191 | 3.75e-56 | 183 |
Msa0407810 | MtrunA17_Chr5g0439061 | 44.340 | 212 | 104 | 5 | 50 | 249 | 29 | 238 | 4.66e-43 | 155 |
Msa0407810 | MtrunA17_Chr5g0439071 | 40.476 | 210 | 114 | 3 | 46 | 247 | 25 | 231 | 1.07e-41 | 149 |
Msa0407810 | MtrunA17_Chr5g0439021 | 41.615 | 161 | 84 | 3 | 46 | 199 | 25 | 182 | 3.06e-32 | 116 |
Msa0407810 | MtrunA17_Chr2g0286601 | 35.294 | 204 | 126 | 3 | 49 | 249 | 14 | 214 | 5.54e-28 | 112 |
Msa0407810 | MtrunA17_Chr2g0286571 | 36.098 | 205 | 123 | 4 | 49 | 249 | 14 | 214 | 5.77e-28 | 108 |
Msa0407810 | MtrunA17_Chr2g0286551 | 34.804 | 204 | 127 | 3 | 49 | 249 | 14 | 214 | 1.89e-25 | 104 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 42 sgRNAs with CRISPR-Local
Find 451 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTTGAAATGCTTAATAAT+TGG | 0.224355 | 3_2:+46826914 | Msa0407810:three_prime_UTR |
AGGGAGAAACACCACTCTTT+TGG | 0.238209 | 3_2:+46820959 | Msa0407810:CDS |
TGAGACTGAATCATAGAATT+AGG | 0.239693 | 3_2:-46820428 | None:intergenic |
TGAGGCTGAATCATAGAATT+AGG | 0.314261 | 3_2:-46820386 | None:intergenic |
TCATTGGAGAAGATGGTAAA+AGG | 0.344288 | 3_2:+46820908 | Msa0407810:CDS |
TAAGTTTCAAACTTCCGAAA+TGG | 0.365986 | 3_2:+46820361 | Msa0407810:exon |
TTCATCTTCATCTTCATCTT+CGG | 0.366491 | 3_2:-46820459 | None:intergenic |
ATTTGTCTTCCATTACTAAC+TGG | 0.368328 | 3_2:-46820648 | None:intergenic |
CATAGAATTAGGATCCATTT+CGG | 0.382498 | 3_2:-46820375 | None:intergenic |
GCCATTCATAGAGAAATATT+CGG | 0.388945 | 3_2:+46821087 | Msa0407810:CDS |
ATAGCAAGATTGATATCATA+TGG | 0.409074 | 3_2:-46821033 | None:intergenic |
CTCTTGAACTTCTTGCTACT+AGG | 0.427415 | 3_2:+46826642 | Msa0407810:CDS |
GTTAGTAATGGAAGACAAAT+GGG | 0.435267 | 3_2:+46820651 | Msa0407810:CDS |
AGTTAGTAATGGAAGACAAA+TGG | 0.436776 | 3_2:+46820650 | Msa0407810:CDS |
GAATAAGATCAATGAGAGAT+GGG | 0.438781 | 3_2:-46820323 | None:intergenic |
AGTATATGTGAATGTATCAT+TGG | 0.446416 | 3_2:+46820892 | Msa0407810:CDS |
AGAATAAGATCAATGAGAGA+TGG | 0.458559 | 3_2:-46820324 | None:intergenic |
ACCGAATATTTCTCTATGAA+TGG | 0.459441 | 3_2:-46821088 | None:intergenic |
TTCATTTCATCTTCATCTTG+AGG | 0.482522 | 3_2:-46820404 | None:intergenic |
CTTCATAGTGCAGCATATAG+AGG | 0.496464 | 3_2:+46820862 | Msa0407810:CDS |
AGAGTGGAAATAAGCTATCA+TGG | 0.522573 | 3_2:+46826678 | Msa0407810:CDS |
CGCTCTATGGAGGACAAACA+TGG | 0.524121 | 3_2:+46826611 | Msa0407810:CDS |
ATGAATGGCAACGTGAAGAA+TGG | 0.528135 | 3_2:-46821073 | None:intergenic |
CTAGTAGCAAGAAGTTCAAG+AGG | 0.536869 | 3_2:-46826641 | None:intergenic |
AAACTGATGTAGGTAAAGAA+AGG | 0.539480 | 3_2:-46821007 | None:intergenic |
GATCAATGAGAGATGGGTAG+TGG | 0.544099 | 3_2:-46820317 | None:intergenic |
CGTGTTCCGCCAGTTAGTAA+TGG | 0.552591 | 3_2:+46820639 | Msa0407810:CDS |
GTAAGCAATGCCTACAAAGA+TGG | 0.555466 | 3_2:+46820757 | Msa0407810:CDS |
AGGAAATCAGCTTTCAAGAG+TGG | 0.555521 | 3_2:+46826662 | Msa0407810:CDS |
TAGCAAGATTGATATCATAT+GGG | 0.563968 | 3_2:-46821032 | None:intergenic |
CTATATGCTGCACTATGAAG+AGG | 0.567355 | 3_2:-46820859 | None:intergenic |
CATTACTAACTGGCGGAACA+CGG | 0.570660 | 3_2:-46820638 | None:intergenic |
GAAGATTATGACTCTCAAGA+TGG | 0.573204 | 3_2:+46820479 | Msa0407810:CDS |
GACTTGTAGATGCAATAGAA+AGG | 0.582410 | 3_2:+46820788 | Msa0407810:CDS |
GAATGTATCATTGGAGAAGA+TGG | 0.599648 | 3_2:+46820901 | Msa0407810:CDS |
GAAAGGCATGGTGATCTAAG+TGG | 0.601066 | 3_2:+46820805 | Msa0407810:CDS |
GCAAGCACAGCCCAAAAGAG+TGG | 0.605571 | 3_2:-46820970 | None:intergenic |
AATCTTGCTATCAATAACAA+TGG | 0.617874 | 3_2:+46821045 | Msa0407810:CDS |
TGTCTTCCATTACTAACTGG+CGG | 0.631097 | 3_2:-46820645 | None:intergenic |
GTAGATGCAATAGAAAGGCA+TGG | 0.659549 | 3_2:+46820793 | Msa0407810:CDS |
AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_2:+46820732 | Msa0407810:CDS |
GTGGAAATAAGCTATCATGG+TGG | 0.721299 | 3_2:+46826681 | Msa0407810:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATATATATATATATATA+TGG | + | chr3_2:46826744-46826763 | Msa0407810:three_prime_UTR | 0.0% |
!!! | TTTTTTTTTTTTTTAGGTTT+AGG | - | chr3_2:46821305-46821324 | None:intergenic | 10.0% |
!!! | AGGTTTTTTTTTTTTTTTTT+AGG | - | chr3_2:46821311-46821330 | None:intergenic | 10.0% |
!! | TTAATTATTTAAAGAAAAGT+GGG | + | chr3_2:46821573-46821592 | Msa0407810:intron | 10.0% |
!! | ATTATAAAATTTCATTCTAT+TGG | - | chr3_2:46821910-46821929 | None:intergenic | 10.0% |
!!! | ATAATCGAAAATTAAATTTT+TGG | - | chr3_2:46822105-46822124 | None:intergenic | 10.0% |
!! | TCATTTATTAAGAAAATAAA+AGG | + | chr3_2:46822857-46822876 | Msa0407810:intron | 10.0% |
!! | CATTTATTAAGAAAATAAAA+GGG | + | chr3_2:46822858-46822877 | Msa0407810:intron | 10.0% |
!!! | TTGATATTATGATAAATTTT+AGG | - | chr3_2:46823400-46823419 | None:intergenic | 10.0% |
!!! | AATTTTTGTAGATTTTTAAA+AGG | + | chr3_2:46823835-46823854 | Msa0407810:intron | 10.0% |
!! | TTAATTAATCACAAAAATGT+TGG | - | chr3_2:46820560-46820579 | None:intergenic | 15.0% |
!!! | TTTTCACAAGATAAAAATAA+AGG | + | chr3_2:46820708-46820727 | Msa0407810:CDS | 15.0% |
!! | TTTCACAAGATAAAAATAAA+GGG | + | chr3_2:46820709-46820728 | Msa0407810:CDS | 15.0% |
!! | AAGCAGTTTAAATATAATAA+TGG | + | chr3_2:46821228-46821247 | Msa0407810:intron | 15.0% |
!!! | ACTTAATCCATAATAATTTT+AGG | - | chr3_2:46821341-46821360 | None:intergenic | 15.0% |
!! | AATAAAAAAATTAGTAAGGA+AGG | - | chr3_2:46821427-46821446 | None:intergenic | 15.0% |
!! | CTTAATTATTTAAAGAAAAG+TGG | + | chr3_2:46821572-46821591 | Msa0407810:intron | 15.0% |
!!! | AATTTTTGTTTTATTGAACT+TGG | + | chr3_2:46822618-46822637 | Msa0407810:intron | 15.0% |
!!! | ACAAAAACAAAAACTTTTTT+TGG | - | chr3_2:46822705-46822724 | None:intergenic | 15.0% |
!!! | AAAAAAGTTTTTGTTTTTGT+TGG | + | chr3_2:46822705-46822724 | Msa0407810:intron | 15.0% |
!!! | GTTGATTTTAATTTTGAAAA+TGG | + | chr3_2:46822727-46822746 | Msa0407810:intron | 15.0% |
!! | TAACAAAATTCTTAACATAA+AGG | + | chr3_2:46823362-46823381 | Msa0407810:intron | 15.0% |
!!! | AGATTTTTAAAAGGATTTTT+AGG | + | chr3_2:46823844-46823863 | Msa0407810:intron | 15.0% |
!!! | AGTTGTTAAAATTTACATTT+TGG | - | chr3_2:46825223-46825242 | None:intergenic | 15.0% |
!!! | AAATGTAAATTTTAACAACT+TGG | + | chr3_2:46825223-46825242 | Msa0407810:intron | 15.0% |
!! | AAATGAAAATAACAGAAAAT+AGG | + | chr3_2:46825253-46825272 | Msa0407810:intron | 15.0% |
!! | AATGAAAATAACAGAAAATA+GGG | + | chr3_2:46825254-46825273 | Msa0407810:intron | 15.0% |
!! | ACAAAAATAAAATCAACAAA+AGG | + | chr3_2:46825335-46825354 | Msa0407810:intron | 15.0% |
!! | AAAAATAAGAAAGGTTAAAA+TGG | + | chr3_2:46826016-46826035 | Msa0407810:intron | 15.0% |
!!! | TATATTAATTGATAATGAGT+TGG | - | chr3_2:46826270-46826289 | None:intergenic | 15.0% |
!!! | AATTAATCAGCTTTTATTTA+TGG | - | chr3_2:46826311-46826330 | None:intergenic | 15.0% |
!!! | ACTTTGAAATTTTATTCTTA+AGG | - | chr3_2:46826405-46826424 | None:intergenic | 15.0% |
!!! | TAGATATTTTGATATATCAT+TGG | + | chr3_2:46826956-46826975 | Msa0407810:three_prime_UTR | 15.0% |
!! | AAACTCTCCTTATATTTATT+AGG | + | chr3_2:46820509-46820528 | Msa0407810:intron | 20.0% |
!! | TAAAGAGCCTAATAAATATA+AGG | - | chr3_2:46820519-46820538 | None:intergenic | 20.0% |
!! | ATTAGAGTAAAAAATGCAAA+GGG | + | chr3_2:46820940-46820959 | Msa0407810:CDS | 20.0% |
!!! | CTTACTTTCTTTTTATTTGT+CGG | + | chr3_2:46821159-46821178 | Msa0407810:intron | 20.0% |
!!! | AATTTTAAGTCAAAAACACA+AGG | + | chr3_2:46821251-46821270 | Msa0407810:intron | 20.0% |
!!! | TTTTTTTTTAGGTTTAGGAA+AGG | - | chr3_2:46821300-46821319 | None:intergenic | 20.0% |
!!! | AATCCATAATAATTTTAGGT+AGG | - | chr3_2:46821337-46821356 | None:intergenic | 20.0% |
!! | ATCAAAAAAAAAACTTGTGT+GGG | - | chr3_2:46821511-46821530 | None:intergenic | 20.0% |
!! | TATCAAAAAAAAAACTTGTG+TGG | - | chr3_2:46821512-46821531 | None:intergenic | 20.0% |
!!! | TTATTTAAAACTTGTAGTTG+GGG | - | chr3_2:46821651-46821670 | None:intergenic | 20.0% |
!!! | GTTATTTAAAACTTGTAGTT+GGG | - | chr3_2:46821652-46821671 | None:intergenic | 20.0% |
!!! | TGTTATTTAAAACTTGTAGT+TGG | - | chr3_2:46821653-46821672 | None:intergenic | 20.0% |
!!! | CTACAAGTTTTAAATAACAA+AGG | + | chr3_2:46821654-46821673 | Msa0407810:intron | 20.0% |
!! | TGATAAATAATTATGTTCCA+TGG | + | chr3_2:46821777-46821796 | Msa0407810:intron | 20.0% |
!!! | AAAAGTAGAAGTTTTTCTAT+GGG | - | chr3_2:46822040-46822059 | None:intergenic | 20.0% |
!! | TTAAATCTAGATTGTTAGTT+TGG | - | chr3_2:46822063-46822082 | None:intergenic | 20.0% |
!! | AAGAAAAAATGAGATATCAA+AGG | - | chr3_2:46822384-46822403 | None:intergenic | 20.0% |
!!! | TTTGATATCTCATTTTTTCT+TGG | + | chr3_2:46822383-46822402 | Msa0407810:intron | 20.0% |
!!! | TTGATATCTCATTTTTTCTT+GGG | + | chr3_2:46822384-46822403 | Msa0407810:intron | 20.0% |
!!! | TGATTAGTTATTTTGCAAAA+AGG | + | chr3_2:46822810-46822829 | Msa0407810:intron | 20.0% |
!! | AAATAAAAGGGAAAATTCAA+TGG | + | chr3_2:46822870-46822889 | Msa0407810:intron | 20.0% |
!! | AATAAAAGGGAAAATTCAAT+GGG | + | chr3_2:46822871-46822890 | Msa0407810:intron | 20.0% |
!! | AAATAAAGTACAAAAAACCT+AGG | + | chr3_2:46823147-46823166 | Msa0407810:intron | 20.0% |
!!! | CATTTATTTTTTTCTTGCAA+AGG | - | chr3_2:46823188-46823207 | None:intergenic | 20.0% |
!! | CTTTGCAAGAAAAAAATAAA+TGG | + | chr3_2:46823186-46823205 | Msa0407810:intron | 20.0% |
!! | AAAATAAAGCTATAGAAATG+AGG | + | chr3_2:46823213-46823232 | Msa0407810:intron | 20.0% |
!! | AAATAAAGCTATAGAAATGA+GGG | + | chr3_2:46823214-46823233 | Msa0407810:intron | 20.0% |
!!! | ATATCATGACAATTTTTCAA+AGG | + | chr3_2:46823445-46823464 | Msa0407810:intron | 20.0% |
!!! | GATACATTTTTAGATACATT+TGG | + | chr3_2:46823523-46823542 | Msa0407810:intron | 20.0% |
!!! | TCTGCAATTTTTGAAAATAA+AGG | + | chr3_2:46825170-46825189 | Msa0407810:intron | 20.0% |
!!! | TTTTTGAAAATAAAGGACAA+AGG | + | chr3_2:46825177-46825196 | Msa0407810:intron | 20.0% |
!!! | TTTTGAAAATAAAGGACAAA+GGG | + | chr3_2:46825178-46825197 | Msa0407810:intron | 20.0% |
!!! | TTTTGAAAGGTTTTTTAACA+TGG | + | chr3_2:46825469-46825488 | Msa0407810:intron | 20.0% |
!! | TTGCAAAAATTCATGAAAAA+GGG | - | chr3_2:46825589-46825608 | None:intergenic | 20.0% |
!! | TTTGCAAAAATTCATGAAAA+AGG | - | chr3_2:46825590-46825609 | None:intergenic | 20.0% |
!!! | TATTTTTAGGTCCAAAATTA+GGG | + | chr3_2:46825869-46825888 | Msa0407810:intron | 20.0% |
!!! | ACCTTTCTTATTTTTAATAG+CGG | - | chr3_2:46826011-46826030 | None:intergenic | 20.0% |
!! | TTAATAAAGAAATTCTCCTA+TGG | + | chr3_2:46826461-46826480 | Msa0407810:intron | 20.0% |
!! | TTTAGATTAAACTTTACCAT+AGG | - | chr3_2:46826480-46826499 | None:intergenic | 20.0% |
!!! | GATATATACAGTAAGAATTT+TGG | - | chr3_2:46826522-46826541 | None:intergenic | 20.0% |
!!! | ATTTTTTATGCGCATATATA+TGG | + | chr3_2:46826830-46826849 | Msa0407810:three_prime_UTR | 20.0% |
!! | AAGCATTTCAAATGAAAAAT+TGG | - | chr3_2:46826908-46826927 | None:intergenic | 20.0% |
!!! | CATTTGAAATGCTTAATAAT+TGG | + | chr3_2:46826914-46826933 | Msa0407810:three_prime_UTR | 20.0% |
! | AAGATAAAAATAAAGGGAAG+AGG | + | chr3_2:46820715-46820734 | Msa0407810:CDS | 25.0% |
! | AGTATATGTGAATGTATCAT+TGG | + | chr3_2:46820892-46820911 | Msa0407810:CDS | 25.0% |
! | GATTAGAGTAAAAAATGCAA+AGG | + | chr3_2:46820939-46820958 | Msa0407810:CDS | 25.0% |
! | TAGCAAGATTGATATCATAT+GGG | - | chr3_2:46821035-46821054 | None:intergenic | 25.0% |
! | ATAGCAAGATTGATATCATA+TGG | - | chr3_2:46821036-46821055 | None:intergenic | 25.0% |
!! | AATCTTGCTATCAATAACAA+TGG | + | chr3_2:46821045-46821064 | Msa0407810:CDS | 25.0% |
!!! | TAATAATTTTAGGTAGGTGT+AGG | - | chr3_2:46821331-46821350 | None:intergenic | 25.0% |
! | ACACCTACCTAAAATTATTA+TGG | + | chr3_2:46821331-46821350 | Msa0407810:intron | 25.0% |
! | GTGAATGTAAATAATCAAGT+GGG | - | chr3_2:46821376-46821395 | None:intergenic | 25.0% |
! | AGTGAATGTAAATAATCAAG+TGG | - | chr3_2:46821377-46821396 | None:intergenic | 25.0% |
!! | TATTTAAAACTTGTAGTTGG+GGG | - | chr3_2:46821650-46821669 | None:intergenic | 25.0% |
! | AATAATTATGTTCCATGGTT+TGG | + | chr3_2:46821782-46821801 | Msa0407810:intron | 25.0% |
! | TTGGATTTGCAAAAACTAAA+TGG | + | chr3_2:46821801-46821820 | Msa0407810:intron | 25.0% |
! | TTTGCAAAAACTAAATGGAA+TGG | + | chr3_2:46821806-46821825 | Msa0407810:intron | 25.0% |
! | AAAAACTAAATGGAATGGAA+TGG | + | chr3_2:46821811-46821830 | Msa0407810:intron | 25.0% |
!! | AAAGTAGAAGTTTTTCTATG+GGG | - | chr3_2:46822039-46822058 | None:intergenic | 25.0% |
!! | GAAAAGTAGAAGTTTTTCTA+TGG | - | chr3_2:46822041-46822060 | None:intergenic | 25.0% |
!! | TAATTTTCACAATAGTCAGT+TGG | - | chr3_2:46822208-46822227 | None:intergenic | 25.0% |
!!! | AATTCTCTTTAAGGTGATTT+TGG | - | chr3_2:46822241-46822260 | None:intergenic | 25.0% |
! | AGCAGATTTAATTCTCTTTA+AGG | - | chr3_2:46822250-46822269 | None:intergenic | 25.0% |
!! | ACTTTTATTACCAATCAACA+AGG | + | chr3_2:46822293-46822312 | Msa0407810:intron | 25.0% |
!!! | ACTGTTTTATCTTGGTTTTT+CGG | + | chr3_2:46822324-46822343 | Msa0407810:intron | 25.0% |
! | TGAGATATCAAAGGTTAAAA+AGG | - | chr3_2:46822375-46822394 | None:intergenic | 25.0% |
! | AAAAACGTTATTTACACCTA+AGG | + | chr3_2:46822555-46822574 | Msa0407810:intron | 25.0% |
! | AAAACGTTATTTACACCTAA+GGG | + | chr3_2:46822556-46822575 | Msa0407810:intron | 25.0% |
!!! | TTTTGAAGAATAAGAGAGAA+AGG | + | chr3_2:46822752-46822771 | Msa0407810:intron | 25.0% |
!! | TAATTTTCCAAAGAAACCTT+GGG | - | chr3_2:46822905-46822924 | None:intergenic | 25.0% |
!! | ATAATTTTCCAAAGAAACCT+TGG | - | chr3_2:46822906-46822925 | None:intergenic | 25.0% |
! | GGATACTTTAGATGTATATA+GGG | - | chr3_2:46823012-46823031 | None:intergenic | 25.0% |
! | TGGATACTTTAGATGTATAT+AGG | - | chr3_2:46823013-46823032 | None:intergenic | 25.0% |
! | AATAAAGCTATAGAAATGAG+GGG | + | chr3_2:46823215-46823234 | Msa0407810:intron | 25.0% |
! | TGAATGAAACATGAAATGAA+AGG | + | chr3_2:46823258-46823277 | Msa0407810:intron | 25.0% |
! | GAATGAAACATGAAATGAAA+GGG | + | chr3_2:46823259-46823278 | Msa0407810:intron | 25.0% |
! | GAGTAGAAATTATAAGCAAA+AGG | + | chr3_2:46823303-46823322 | Msa0407810:intron | 25.0% |
! | TGAAAAATTGTCATGATATG+AGG | - | chr3_2:46823444-46823463 | None:intergenic | 25.0% |
!!! | TTTAAAAGGATTTTTAGGCA+TGG | + | chr3_2:46823849-46823868 | Msa0407810:intron | 25.0% |
! | GTGAAAAATAGAGTAGTTTA+GGG | - | chr3_2:46824322-46824341 | None:intergenic | 25.0% |
! | TGTGAAAAATAGAGTAGTTT+AGG | - | chr3_2:46824323-46824342 | None:intergenic | 25.0% |
!!! | ACTCTGATTTGGAAAATAAA+CGG | + | chr3_2:46824359-46824378 | Msa0407810:intron | 25.0% |
! | GGTTTGTAAATACGAATAAA+CGG | - | chr3_2:46824493-46824512 | None:intergenic | 25.0% |
! | TGATGATATGACCTTTATAT+AGG | + | chr3_2:46824983-46825002 | Msa0407810:intron | 25.0% |
!!! | CTTTTTTTCAAATTGCAGTT+TGG | - | chr3_2:46825116-46825135 | None:intergenic | 25.0% |
! | CAAACTGCAATTTGAAAAAA+AGG | + | chr3_2:46825114-46825133 | Msa0407810:intron | 25.0% |
! | AACAAAGACTTGAAACTTAA+AGG | + | chr3_2:46825142-46825161 | Msa0407810:intron | 25.0% |
!!! | TGTAAATTTTAACAACTTGG+AGG | + | chr3_2:46825226-46825245 | Msa0407810:intron | 25.0% |
!! | ACTCAAATGCAATTTTTGAA+AGG | + | chr3_2:46825456-46825475 | Msa0407810:intron | 25.0% |
! | ATTAAAATGAGTTTGAATGC+AGG | + | chr3_2:46825549-46825568 | Msa0407810:intron | 25.0% |
!! | CATTTAAAACCATCCAAAAA+GGG | - | chr3_2:46825687-46825706 | None:intergenic | 25.0% |
! | TAAAATATGCAGATAAAGCA+TGG | + | chr3_2:46825759-46825778 | Msa0407810:intron | 25.0% |
! | ATAAAGCATGGTAAAATATC+AGG | + | chr3_2:46825771-46825790 | Msa0407810:intron | 25.0% |
! | TAAAGCATGGTAAAATATCA+GGG | + | chr3_2:46825772-46825791 | Msa0407810:intron | 25.0% |
!! | CATTTTGAGCAAGTATTTTT+AGG | + | chr3_2:46825856-46825875 | Msa0407810:intron | 25.0% |
!!! | GTATTTTTAGGTCCAAAATT+AGG | + | chr3_2:46825868-46825887 | Msa0407810:intron | 25.0% |
! | ACAACTTATGTTCTTGTTAA+CGG | - | chr3_2:46826091-46826110 | None:intergenic | 25.0% |
! | AAATGTATTTACCAACGTTA+TGG | - | chr3_2:46826142-46826161 | None:intergenic | 25.0% |
GAATAAGATCAATGAGAGAT+GGG | - | chr3_2:46820326-46820345 | None:intergenic | 30.0% | |
AGAATAAGATCAATGAGAGA+TGG | - | chr3_2:46820327-46820346 | None:intergenic | 30.0% | |
TAAGTTTCAAACTTCCGAAA+TGG | + | chr3_2:46820361-46820380 | Msa0407810:exon | 30.0% | |
CATAGAATTAGGATCCATTT+CGG | - | chr3_2:46820378-46820397 | None:intergenic | 30.0% | |
TTCATTTCATCTTCATCTTG+AGG | - | chr3_2:46820407-46820426 | None:intergenic | 30.0% | |
TGAGACTGAATCATAGAATT+AGG | - | chr3_2:46820431-46820450 | None:intergenic | 30.0% | |
TTCATCTTCATCTTCATCTT+CGG | - | chr3_2:46820462-46820481 | None:intergenic | 30.0% | |
ATTTGTCTTCCATTACTAAC+TGG | - | chr3_2:46820651-46820670 | None:intergenic | 30.0% | |
! | AGTTAGTAATGGAAGACAAA+TGG | + | chr3_2:46820650-46820669 | Msa0407810:CDS | 30.0% |
! | GTTAGTAATGGAAGACAAAT+GGG | + | chr3_2:46820651-46820670 | Msa0407810:CDS | 30.0% |
! | GGTAAAGAAAGGTCTTTTTA+TGG | - | chr3_2:46820999-46821018 | None:intergenic | 30.0% |
AAACTGATGTAGGTAAAGAA+AGG | - | chr3_2:46821010-46821029 | None:intergenic | 30.0% | |
GCCATTCATAGAGAAATATT+CGG | + | chr3_2:46821087-46821106 | Msa0407810:CDS | 30.0% | |
ACCGAATATTTCTCTATGAA+TGG | - | chr3_2:46821091-46821110 | None:intergenic | 30.0% | |
GTGTAAATAACTAGTAAGGT+AGG | - | chr3_2:46821465-46821484 | None:intergenic | 30.0% | |
GTGAGTGTAAATAACTAGTA+AGG | - | chr3_2:46821469-46821488 | None:intergenic | 30.0% | |
TGGGTGTAAATTAACAAAGT+GGG | + | chr3_2:46821592-46821611 | Msa0407810:intron | 30.0% | |
AAGTTGCTAATTTACTCCTT+AGG | + | chr3_2:46821710-46821729 | Msa0407810:intron | 30.0% | |
GGAATGGAATGGTATATAAT+TGG | + | chr3_2:46821822-46821841 | Msa0407810:intron | 30.0% | |
TTTGATGGAATAAGATGGAA+TGG | - | chr3_2:46821851-46821870 | None:intergenic | 30.0% | |
AATAGAAGAAATGATACCTG+CGG | + | chr3_2:46821944-46821963 | Msa0407810:intron | 30.0% | |
! | AAGTAGAAGTTTTTCTATGG+GGG | - | chr3_2:46822038-46822057 | None:intergenic | 30.0% |
GATTTAATATGATCAACCAG+AGG | + | chr3_2:46822076-46822095 | Msa0407810:intron | 30.0% | |
!! | ATTAAATTTTTGGACACCTC+TGG | - | chr3_2:46822095-46822114 | None:intergenic | 30.0% |
GAAAAACCAAGATAAAACAG+TGG | - | chr3_2:46822325-46822344 | None:intergenic | 30.0% | |
!! | CTGTTTTATCTTGGTTTTTC+GGG | + | chr3_2:46822325-46822344 | Msa0407810:intron | 30.0% |
!!! | TATCTCATTTTTTCTTGGGA+AGG | + | chr3_2:46822388-46822407 | Msa0407810:intron | 30.0% |
!!! | ATCTCATTTTTTCTTGGGAA+GGG | + | chr3_2:46822389-46822408 | Msa0407810:intron | 30.0% |
TAGGATACTATAGTTGCTAT+AGG | - | chr3_2:46822483-46822502 | None:intergenic | 30.0% | |
TAGCAACTATAGTATCCTAT+AGG | + | chr3_2:46822484-46822503 | Msa0407810:intron | 30.0% | |
!!! | TTTTTTGGAAGAGAACTACA+TGG | - | chr3_2:46822690-46822709 | None:intergenic | 30.0% |
!! | ATAGGATTTTGGAAAATGTG+AGG | + | chr3_2:46822785-46822804 | Msa0407810:intron | 30.0% |
! | TATGCTTTAGATGTATGCTT+AGG | - | chr3_2:46822985-46823004 | None:intergenic | 30.0% |
GTAGCAAAAACTTGACAAAA+AGG | + | chr3_2:46823339-46823358 | Msa0407810:intron | 30.0% | |
TGTCATGATATGAGGATTAT+AGG | - | chr3_2:46823436-46823455 | None:intergenic | 30.0% | |
AACAGCATGTATCAAGAATT+AGG | + | chr3_2:46823673-46823692 | Msa0407810:intron | 30.0% | |
!! | TTCATTTTGTGATGTTTCTG+TGG | - | chr3_2:46823800-46823819 | None:intergenic | 30.0% |
TACGAATATGAACTCTGATT+TGG | + | chr3_2:46824348-46824367 | Msa0407810:intron | 30.0% | |
!!! | CTTTTTCAAAGTCTTTTCGA+AGG | + | chr3_2:46824432-46824451 | Msa0407810:intron | 30.0% |
GATTCGAACAAAGAAATCTT+CGG | + | chr3_2:46824574-46824593 | Msa0407810:intron | 30.0% | |
GTGTTGAACCGAAAATAAAT+CGG | + | chr3_2:46824631-46824650 | Msa0407810:intron | 30.0% | |
!!! | AGGAATCACCGATTTATTTT+CGG | - | chr3_2:46824642-46824661 | None:intergenic | 30.0% |
ATGAATCATCATCATTGAAC+CGG | - | chr3_2:46824761-46824780 | None:intergenic | 30.0% | |
! | TTTGCTTCAATTTTGTGTTC+TGG | + | chr3_2:46824819-46824838 | Msa0407810:intron | 30.0% |
!!! | ATTTTGTGTTCTGGAAAGTT+AGG | + | chr3_2:46824828-46824847 | Msa0407810:intron | 30.0% |
!!! | TTTTGTGTTCTGGAAAGTTA+GGG | + | chr3_2:46824829-46824848 | Msa0407810:intron | 30.0% |
!! | ATTCTTGGTGTTCTTGAAAA+CGG | + | chr3_2:46824871-46824890 | Msa0407810:intron | 30.0% |
!! | AGGATTTTGATCTTTGATTC+TGG | + | chr3_2:46824896-46824915 | Msa0407810:intron | 30.0% |
TAAGTCCATAATTTAGTCCA+AGG | - | chr3_2:46825061-46825080 | None:intergenic | 30.0% | |
TTGGACTAAATTATGGACTT+AGG | + | chr3_2:46825060-46825079 | Msa0407810:intron | 30.0% | |
AAGTTTGTCAAATTGCAGAA+AGG | - | chr3_2:46825087-46825106 | None:intergenic | 30.0% | |
CTGCAATTTGACAAACTTAT+AGG | + | chr3_2:46825089-46825108 | Msa0407810:intron | 30.0% | |
AATGAACCAACTACAAAATG+AGG | + | chr3_2:46825363-46825382 | Msa0407810:intron | 30.0% | |
! | TAAGTACCTCATTTTGTAGT+TGG | - | chr3_2:46825372-46825391 | None:intergenic | 30.0% |
!! | CATAAAATTTTGACAGAGAG+AGG | - | chr3_2:46825402-46825421 | None:intergenic | 30.0% |
AGACAAATTCAAATGACTTG+AGG | + | chr3_2:46825651-46825670 | Msa0407810:intron | 30.0% | |
! | GCATTTAAAACCATCCAAAA+AGG | - | chr3_2:46825688-46825707 | None:intergenic | 30.0% |
AGGGTAAAACAATAGCAAAT+TGG | + | chr3_2:46825791-46825810 | Msa0407810:intron | 30.0% | |
! | TGGATGTTATACCCTAATTT+TGG | - | chr3_2:46825883-46825902 | None:intergenic | 30.0% |
!!! | TTCTTATTTTTAATAGCGGC+CGG | - | chr3_2:46826007-46826026 | None:intergenic | 30.0% |
GCCGCTATTAAAAATAAGAA+AGG | + | chr3_2:46826007-46826026 | Msa0407810:intron | 30.0% | |
GTTAAAATGGATCACCTTAA+CGG | + | chr3_2:46826029-46826048 | Msa0407810:intron | 30.0% | |
TTAAAATGGATCACCTTAAC+GGG | + | chr3_2:46826030-46826049 | Msa0407810:intron | 30.0% | |
! | TATGGTCGTCAAATTTTTGA+CGG | - | chr3_2:46826293-46826312 | None:intergenic | 30.0% |
TGAGGCTGAATCATAGAATT+AGG | - | chr3_2:46820389-46820408 | None:intergenic | 35.0% | |
GAAGATTATGACTCTCAAGA+TGG | + | chr3_2:46820479-46820498 | Msa0407810:CDS | 35.0% | |
! | TCGTTTTACACCATCTTTGT+AGG | - | chr3_2:46820770-46820789 | None:intergenic | 35.0% |
GACTTGTAGATGCAATAGAA+AGG | + | chr3_2:46820788-46820807 | Msa0407810:CDS | 35.0% | |
GAATGTATCATTGGAGAAGA+TGG | + | chr3_2:46820901-46820920 | Msa0407810:CDS | 35.0% | |
TCATTGGAGAAGATGGTAAA+AGG | + | chr3_2:46820908-46820927 | Msa0407810:CDS | 35.0% | |
CATATGGGAAAAACTGATGT+AGG | - | chr3_2:46821020-46821039 | None:intergenic | 35.0% | |
GTAAATAATCAAGTGGGTGT+AGG | - | chr3_2:46821370-46821389 | None:intergenic | 35.0% | |
GTGGGTGTAAATTAACAAAG+TGG | + | chr3_2:46821591-46821610 | Msa0407810:intron | 35.0% | |
CATCAATCAAACACAACCTA+AGG | - | chr3_2:46821729-46821748 | None:intergenic | 35.0% | |
! | CTTAGGTTGTGTTTGATTGA+TGG | + | chr3_2:46821727-46821746 | Msa0407810:intron | 35.0% |
GTTTGATTGATGGAATGTGA+TGG | + | chr3_2:46821737-46821756 | Msa0407810:intron | 35.0% | |
! | GTTTTTGCAAATCCAAACCA+TGG | - | chr3_2:46821797-46821816 | None:intergenic | 35.0% |
GAGGATTTGATGGAATAAGA+TGG | - | chr3_2:46821856-46821875 | None:intergenic | 35.0% | |
ATGAAAAGTGGAGGATTTGA+TGG | - | chr3_2:46821866-46821885 | None:intergenic | 35.0% | |
TATTGGATACACCCCAAATT+GGG | - | chr3_2:46821893-46821912 | None:intergenic | 35.0% | |
ATAGAAGAAATGATACCTGC+GGG | + | chr3_2:46821945-46821964 | Msa0407810:intron | 35.0% | |
! | TATTTGGGTTTACCTATAGG+TGG | - | chr3_2:46822130-46822149 | None:intergenic | 35.0% |
! | TCGTATTTGGGTTTACCTAT+AGG | - | chr3_2:46822133-46822152 | None:intergenic | 35.0% |
TTCACAATAGTCAGTTGGTT+TGG | - | chr3_2:46822203-46822222 | None:intergenic | 35.0% | |
TGCTTTCGAAGATCTAATGT+TGG | + | chr3_2:46822266-46822285 | Msa0407810:intron | 35.0% | |
! | TGTCATCCACTGTTTTATCT+TGG | + | chr3_2:46822316-46822335 | Msa0407810:intron | 35.0% |
!!! | TTTTGGTATAGGAAGGTGTT+AGG | + | chr3_2:46822455-46822474 | Msa0407810:intron | 35.0% |
AAAGTAAAGACGGTTCCTAT+AGG | - | chr3_2:46822502-46822521 | None:intergenic | 35.0% | |
TTTGCTAGGTTAAGAATTGG+AGG | + | chr3_2:46822579-46822598 | Msa0407810:intron | 35.0% | |
TTGCTAGGTTAAGAATTGGA+GGG | + | chr3_2:46822580-46822599 | Msa0407810:intron | 35.0% | |
! | TTGCCTACATACCCTTTTAA+GGG | + | chr3_2:46822656-46822675 | Msa0407810:intron | 35.0% |
TGGAGTTTGATCCCTTAAAA+GGG | - | chr3_2:46822670-46822689 | None:intergenic | 35.0% | |
ATGGAGTTTGATCCCTTAAA+AGG | - | chr3_2:46822671-46822690 | None:intergenic | 35.0% | |
! | TTTTGATCCCAAGGTTTCTT+TGG | + | chr3_2:46822895-46822914 | Msa0407810:intron | 35.0% |
AGACCATAGCATGTAAACTA+GGG | - | chr3_2:46823106-46823125 | None:intergenic | 35.0% | |
AAGACCATAGCATGTAAACT+AGG | - | chr3_2:46823107-46823126 | None:intergenic | 35.0% | |
! | ATGAAAGGGTTAGTAGCATA+AGG | + | chr3_2:46823273-46823292 | Msa0407810:intron | 35.0% |
TACTGAATGTTAACGTGTTG+TGG | - | chr3_2:46823601-46823620 | None:intergenic | 35.0% | |
!! | GTTTTTGGATCTGGTTGTTT+GGG | - | chr3_2:46823958-46823977 | None:intergenic | 35.0% |
!!! | TGTTTTTGGATCTGGTTGTT+TGG | - | chr3_2:46823959-46823978 | None:intergenic | 35.0% |
TGAAACAAACCAGTAGCTTA+GGG | - | chr3_2:46824100-46824119 | None:intergenic | 35.0% | |
ATGAAACAAACCAGTAGCTT+AGG | - | chr3_2:46824101-46824120 | None:intergenic | 35.0% | |
! | CAAAGTCTTTTCGAAGGAAA+AGG | + | chr3_2:46824438-46824457 | Msa0407810:intron | 35.0% |
AAGAAGAAGGATTGAAGAAG+AGG | - | chr3_2:46824662-46824681 | None:intergenic | 35.0% | |
AATCGAAGTTGAGAAGAAGA+AGG | - | chr3_2:46824675-46824694 | None:intergenic | 35.0% | |
GAAAGTTAGGGTTTGGATTT+GGG | + | chr3_2:46824841-46824860 | Msa0407810:intron | 35.0% | |
AAAGTTAGGGTTTGGATTTG+GGG | + | chr3_2:46824842-46824861 | Msa0407810:intron | 35.0% | |
GATTTGGGGATGAATATTCT+TGG | + | chr3_2:46824856-46824875 | Msa0407810:intron | 35.0% | |
ACTTGCCTTGGACTAAATTA+TGG | + | chr3_2:46825053-46825072 | Msa0407810:intron | 35.0% | |
TAAAGGACAAAGGGCAAAAA+TGG | + | chr3_2:46825187-46825206 | Msa0407810:intron | 35.0% | |
TTGAGTCAATTTAGTCCCTA+GGG | - | chr3_2:46825442-46825461 | None:intergenic | 35.0% | |
TTTGAGTCAATTTAGTCCCT+AGG | - | chr3_2:46825443-46825462 | None:intergenic | 35.0% | |
! | AAGACTCAGAGACAATTTTC+AGG | + | chr3_2:46825525-46825544 | Msa0407810:intron | 35.0% |
! | AGACTCAGAGACAATTTTCA+GGG | + | chr3_2:46825526-46825545 | Msa0407810:intron | 35.0% |
TCAAAGACACATATCAGAGA+TGG | + | chr3_2:46825828-46825847 | Msa0407810:intron | 35.0% | |
ACATCCACAAATTGAAGATG+CGG | + | chr3_2:46825896-46825915 | Msa0407810:intron | 35.0% | |
! | TTTTCCGCATCTTCAATTTG+TGG | - | chr3_2:46825903-46825922 | None:intergenic | 35.0% |
!!! | TATAAGGTTGGTGATGGTTT+TGG | - | chr3_2:46825932-46825951 | None:intergenic | 35.0% |
AGATCTCTTCTCTGGTTATA+AGG | - | chr3_2:46825948-46825967 | None:intergenic | 35.0% | |
ATAGTAGAAGATCTCTTCTC+TGG | - | chr3_2:46825956-46825975 | None:intergenic | 35.0% | |
GAAGAGATCTTCTACTATAG+TGG | + | chr3_2:46825958-46825977 | Msa0407810:intron | 35.0% | |
!!! | TCTTATTTTTAATAGCGGCC+GGG | - | chr3_2:46826006-46826025 | None:intergenic | 35.0% |
TAAAATGGATCACCTTAACG+GGG | + | chr3_2:46826031-46826050 | Msa0407810:intron | 35.0% | |
ATCTATTTCCTCCATAACGT+TGG | + | chr3_2:46826128-46826147 | Msa0407810:intron | 35.0% | |
TGTATTTACCAACGTTATGG+AGG | - | chr3_2:46826139-46826158 | None:intergenic | 35.0% | |
CTCAGAGGATTGAAATTACT+TGG | - | chr3_2:46826180-46826199 | None:intergenic | 35.0% | |
AGTAGCTAGCCAATTAGATA+AGG | - | chr3_2:46826353-46826372 | None:intergenic | 35.0% | |
AGGTGTAGTTGTGATCTAAA+TGG | - | chr3_2:46826385-46826404 | None:intergenic | 35.0% | |
AGAGTGGAAATAAGCTATCA+TGG | + | chr3_2:46826678-46826697 | Msa0407810:CDS | 35.0% | |
TGTCTTCCATTACTAACTGG+CGG | - | chr3_2:46820648-46820667 | None:intergenic | 40.0% | |
AAGAGGAACAGCATTACATG+TGG | + | chr3_2:46820732-46820751 | Msa0407810:CDS | 40.0% | |
GTAAGCAATGCCTACAAAGA+TGG | + | chr3_2:46820757-46820776 | Msa0407810:CDS | 40.0% | |
GTAGATGCAATAGAAAGGCA+TGG | + | chr3_2:46820793-46820812 | Msa0407810:CDS | 40.0% | |
CTATATGCTGCACTATGAAG+AGG | - | chr3_2:46820862-46820881 | None:intergenic | 40.0% | |
CTTCATAGTGCAGCATATAG+AGG | + | chr3_2:46820862-46820881 | Msa0407810:CDS | 40.0% | |
ATGAATGGCAACGTGAAGAA+TGG | - | chr3_2:46821076-46821095 | None:intergenic | 40.0% | |
ATTAGCAACTTGCACTCACT+TGG | - | chr3_2:46821701-46821720 | None:intergenic | 40.0% | |
! | ATTGATGGAATGTGATGGAG+TGG | + | chr3_2:46821742-46821761 | Msa0407810:intron | 40.0% |
! | TTGATGGAATGTGATGGAGT+GGG | + | chr3_2:46821743-46821762 | Msa0407810:intron | 40.0% |
AAATTGGGGGGAATGAAAAG+TGG | - | chr3_2:46821878-46821897 | None:intergenic | 40.0% | |
! | ACTTTTCATTCCCCCCAATT+TGG | + | chr3_2:46821877-46821896 | Msa0407810:intron | 40.0% |
! | CTTTTCATTCCCCCCAATTT+GGG | + | chr3_2:46821878-46821897 | Msa0407810:intron | 40.0% |
! | TTTTCATTCCCCCCAATTTG+GGG | + | chr3_2:46821879-46821898 | Msa0407810:intron | 40.0% |
ATTGGATACACCCCAAATTG+GGG | - | chr3_2:46821892-46821911 | None:intergenic | 40.0% | |
CTATTGGATACACCCCAAAT+TGG | - | chr3_2:46821894-46821913 | None:intergenic | 40.0% | |
CTACTACCTTTCCTTCTTCA+AGG | - | chr3_2:46821973-46821992 | None:intergenic | 40.0% | |
AAGAAGGAAAGGTAGTAGAC+CGG | + | chr3_2:46821975-46821994 | Msa0407810:intron | 40.0% | |
GTCTGTCATATCCTTTCTTC+CGG | - | chr3_2:46821997-46822016 | None:intergenic | 40.0% | |
GAAAGGATATGACAGACTTC+AGG | + | chr3_2:46822000-46822019 | Msa0407810:intron | 40.0% | |
TTTCGATTATCGCCACCTAT+AGG | + | chr3_2:46822115-46822134 | Msa0407810:intron | 40.0% | |
AGGTAAACCCAAATACGAGA+AGG | + | chr3_2:46822135-46822154 | Msa0407810:intron | 40.0% | |
GGTAAACCCAAATACGAGAA+GGG | + | chr3_2:46822136-46822155 | Msa0407810:intron | 40.0% | |
TCTCTACCCTTCTCGTATTT+GGG | - | chr3_2:46822145-46822164 | None:intergenic | 40.0% | |
ATCTCTACCCTTCTCGTATT+TGG | - | chr3_2:46822146-46822165 | None:intergenic | 40.0% | |
ACGGTGCTTAGTTGTAAAAC+TGG | - | chr3_2:46822169-46822188 | None:intergenic | 40.0% | |
GAAAAAACCCTTGAGAATCG+AGG | + | chr3_2:46822420-46822439 | Msa0407810:intron | 40.0% | |
!!! | GAGTTGGTTTTGGTATAGGA+AGG | + | chr3_2:46822448-46822467 | Msa0407810:intron | 40.0% |
! | TTTACACCTAAGGGTTTGCT+AGG | + | chr3_2:46822565-46822584 | Msa0407810:intron | 40.0% |
TCTTAACCTAGCAAACCCTT+AGG | - | chr3_2:46822574-46822593 | None:intergenic | 40.0% | |
!! | GGGTTTGCTAGGTTAAGAAT+TGG | + | chr3_2:46822576-46822595 | Msa0407810:intron | 40.0% |
! | CTTGCCTACATACCCTTTTA+AGG | + | chr3_2:46822655-46822674 | Msa0407810:intron | 40.0% |
! | GATCCCTTAAAAGGGTATGT+AGG | - | chr3_2:46822662-46822681 | None:intergenic | 40.0% |
AATAAGAGAGAAAGGCCTCA+AGG | + | chr3_2:46822760-46822779 | Msa0407810:intron | 40.0% | |
ATAAGAGAGAAAGGCCTCAA+GGG | + | chr3_2:46822761-46822780 | Msa0407810:intron | 40.0% | |
!! | TCAATGGGATTTTGATCCCA+AGG | + | chr3_2:46822886-46822905 | Msa0407810:intron | 40.0% |
GTAAACTAGGGCCTATGTAA+CGG | - | chr3_2:46823094-46823113 | None:intergenic | 40.0% | |
GGACTTAGCATGTATAACCT+AGG | - | chr3_2:46823167-46823186 | None:intergenic | 40.0% | |
TATAGAAATGAGGGGAGATG+AGG | + | chr3_2:46823223-46823242 | Msa0407810:intron | 40.0% | |
!! | AAAGGATTTTTAGGCATGGC+AGG | + | chr3_2:46823853-46823872 | Msa0407810:intron | 40.0% |
!! | AAGGATTTTTAGGCATGGCA+GGG | + | chr3_2:46823854-46823873 | Msa0407810:intron | 40.0% |
TCCAGTACAAAAATAAGCCC+AGG | + | chr3_2:46823932-46823951 | Msa0407810:intron | 40.0% | |
ATCCACATGGATCAATCCTA+CGG | - | chr3_2:46824000-46824019 | None:intergenic | 40.0% | |
TGGATCTAACCTAGATCCTA+TGG | + | chr3_2:46824015-46824034 | Msa0407810:intron | 40.0% | |
ATCTAACCTAGATCCTATGG+TGG | + | chr3_2:46824018-46824037 | Msa0407810:intron | 40.0% | |
! | GCTTTTATAGAGGACTGAAC+CGG | - | chr3_2:46824078-46824097 | None:intergenic | 40.0% |
! | GTAGCTTAGGGCTTTTATAG+AGG | - | chr3_2:46824088-46824107 | None:intergenic | 40.0% |
CTATAAAAGCCCTAAGCTAC+TGG | + | chr3_2:46824088-46824107 | Msa0407810:intron | 40.0% | |
TCACTTCTCTTTCTCTCTCT+AGG | + | chr3_2:46824124-46824143 | Msa0407810:intron | 40.0% | |
CGGAGAAGATGAAGATTCAT+CGG | + | chr3_2:46824226-46824245 | Msa0407810:intron | 40.0% | |
AACGGTGAATCAGAGTAGAT+CGG | - | chr3_2:46824475-46824494 | None:intergenic | 40.0% | |
! | CTTCTCGTTTTCATCGCAAA+AGG | - | chr3_2:46824525-46824544 | None:intergenic | 40.0% |
! | CTTTTGCGATGAAAACGAGA+AGG | + | chr3_2:46824523-46824542 | Msa0407810:intron | 40.0% |
! | TGAAAACGAGAAGGTTTTCG+TGG | + | chr3_2:46824532-46824551 | Msa0407810:intron | 40.0% |
TCGAATCTCCATTTCAACTC+AGG | - | chr3_2:46824561-46824580 | None:intergenic | 40.0% | |
GTAGAAGTTTCGAATCCTTC+TGG | + | chr3_2:46824605-46824624 | Msa0407810:intron | 40.0% | |
AAGTTTCGAATCCTTCTGGT+AGG | + | chr3_2:46824609-46824628 | Msa0407810:intron | 40.0% | |
TGCTTGAATTGCAGAACAAC+CGG | + | chr3_2:46824739-46824758 | Msa0407810:intron | 40.0% | |
!! | TGTTCTGGAAAGTTAGGGTT+TGG | + | chr3_2:46824834-46824853 | Msa0407810:intron | 40.0% |
GGAAAGTTAGGGTTTGGATT+TGG | + | chr3_2:46824840-46824859 | Msa0407810:intron | 40.0% | |
TGGTGTTCTTGAAAACGGTT+AGG | + | chr3_2:46824876-46824895 | Msa0407810:intron | 40.0% | |
! | TTGATTCTGGAGAGAGAATG+TGG | + | chr3_2:46824909-46824928 | Msa0407810:intron | 40.0% |
! | TGGAATGGTGTTTGTTGAGT+TGG | + | chr3_2:46824929-46824948 | Msa0407810:intron | 40.0% |
!! | AATGGTGTTTGTTGAGTTGG+CGG | + | chr3_2:46824932-46824951 | Msa0407810:intron | 40.0% |
ACACATGGCAGCCTATATAA+AGG | - | chr3_2:46824997-46825016 | None:intergenic | 40.0% | |
AAGGGCAAAAATGGACAAAG+AGG | + | chr3_2:46825196-46825215 | Msa0407810:intron | 40.0% | |
AAATGACCAAAATGCCCCTA+GGG | + | chr3_2:46825424-46825443 | Msa0407810:intron | 40.0% | |
TGAGTCAATTTAGTCCCTAG+GGG | - | chr3_2:46825441-46825460 | None:intergenic | 40.0% | |
! | AGGTGCAAGAAAACCCTTTT+TGG | + | chr3_2:46825671-46825690 | Msa0407810:intron | 40.0% |
! | GCAAGAAAACCCTTTTTGGA+TGG | + | chr3_2:46825675-46825694 | Msa0407810:intron | 40.0% |
!! | TCTGGTTATAAGGTTGGTGA+TGG | - | chr3_2:46825938-46825957 | None:intergenic | 40.0% |
CTCTTCTCTGGTTATAAGGT+TGG | - | chr3_2:46825944-46825963 | None:intergenic | 40.0% | |
CATCATAACATTAAGACCCC+CGG | + | chr3_2:46825985-46826004 | Msa0407810:intron | 40.0% | |
!!! | TTATTTTTAATAGCGGCCGG+GGG | - | chr3_2:46826004-46826023 | None:intergenic | 40.0% |
!!! | CTTATTTTTAATAGCGGCCG+GGG | - | chr3_2:46826005-46826024 | None:intergenic | 40.0% |
!! | CGAGAAAGTTTTTGACTCAG+AGG | - | chr3_2:46826195-46826214 | None:intergenic | 40.0% |
TTAGATAAGGACAGAGGAGA+GGG | - | chr3_2:46826340-46826359 | None:intergenic | 40.0% | |
ATTAGATAAGGACAGAGGAG+AGG | - | chr3_2:46826341-46826360 | None:intergenic | 40.0% | |
CTCCTCTGTCCTTATCTAAT+TGG | + | chr3_2:46826341-46826360 | Msa0407810:intron | 40.0% | |
AGCCAATTAGATAAGGACAG+AGG | - | chr3_2:46826346-46826365 | None:intergenic | 40.0% | |
! | GTATCCGATTTTTCGCTCTA+TGG | + | chr3_2:46826598-46826617 | Msa0407810:CDS | 40.0% |
TCCTCCATAGAGCGAAAAAT+CGG | - | chr3_2:46826605-46826624 | None:intergenic | 40.0% | |
CTAGTAGCAAGAAGTTCAAG+AGG | - | chr3_2:46826644-46826663 | None:intergenic | 40.0% | |
CTCTTGAACTTCTTGCTACT+AGG | + | chr3_2:46826642-46826661 | Msa0407810:CDS | 40.0% | |
AGGAAATCAGCTTTCAAGAG+TGG | + | chr3_2:46826662-46826681 | Msa0407810:CDS | 40.0% | |
GTGGAAATAAGCTATCATGG+TGG | + | chr3_2:46826681-46826700 | Msa0407810:CDS | 40.0% | |
GATCAATGAGAGATGGGTAG+TGG | - | chr3_2:46820320-46820339 | None:intergenic | 45.0% | |
CATTACTAACTGGCGGAACA+CGG | - | chr3_2:46820641-46820660 | None:intergenic | 45.0% | |
! | GAAAGGCATGGTGATCTAAG+TGG | + | chr3_2:46820805-46820824 | Msa0407810:CDS | 45.0% |
! | AGGGAGAAACACCACTCTTT+TGG | + | chr3_2:46820959-46820978 | Msa0407810:CDS | 45.0% |
! | GGGAGAAACACCACTCTTTT+GGG | + | chr3_2:46820960-46820979 | Msa0407810:CDS | 45.0% |
TTGGATACACCCCAAATTGG+GGG | - | chr3_2:46821891-46821910 | None:intergenic | 45.0% | |
AAGGTAGTAGACCGGAAGAA+AGG | + | chr3_2:46821983-46822002 | Msa0407810:intron | 45.0% | |
! | TGGTTTGGCAGAAGCTTCAA+CGG | - | chr3_2:46822188-46822207 | None:intergenic | 45.0% |
GTGGATGACACCTTGTTGAT+TGG | - | chr3_2:46822306-46822325 | None:intergenic | 45.0% | |
AACCCTTGAGAATCGAGGTT+CGG | + | chr3_2:46822425-46822444 | Msa0407810:intron | 45.0% | |
!!! | TCGGGAGTTGGTTTTGGTAT+AGG | + | chr3_2:46822444-46822463 | Msa0407810:intron | 45.0% |
GCGTGCGTAGAAAGTAAAGA+CGG | - | chr3_2:46822512-46822531 | None:intergenic | 45.0% | |
TTGGAGGGAGAAGAATGTGT+TGG | + | chr3_2:46822595-46822614 | Msa0407810:intron | 45.0% | |
TCCAAAATCCTATGCCCTTG+AGG | - | chr3_2:46822778-46822797 | None:intergenic | 45.0% | |
ACACATGCACACACATCACA+TGG | - | chr3_2:46823033-46823052 | None:intergenic | 45.0% | |
TGTGATGTGTGTGCATGTGT+CGG | + | chr3_2:46823033-46823052 | Msa0407810:intron | 45.0% | |
GAGTCCATTGTCCGTTACAT+AGG | + | chr3_2:46823080-46823099 | Msa0407810:intron | 45.0% | |
AGGCCCTAGTTTACATGCTA+TGG | + | chr3_2:46823100-46823119 | Msa0407810:intron | 45.0% | |
!! | AGGATTTTTAGGCATGGCAG+GGG | + | chr3_2:46823855-46823874 | Msa0407810:intron | 45.0% |
!!! | GCCTGGGCTTATTTTTGTAC+TGG | - | chr3_2:46823936-46823955 | None:intergenic | 45.0% |
ACCAGATCCAAAAACACCTC+AGG | + | chr3_2:46823963-46823982 | Msa0407810:intron | 45.0% | |
!!! | TCCTGAGGTGTTTTTGGATC+TGG | - | chr3_2:46823967-46823986 | None:intergenic | 45.0% |
!! | TGAAGCTCCTGAGGTGTTTT+TGG | - | chr3_2:46823973-46823992 | None:intergenic | 45.0% |
AAAAACACCTCAGGAGCTTC+AGG | + | chr3_2:46823972-46823991 | Msa0407810:intron | 45.0% | |
AAAACACCTCAGGAGCTTCA+GGG | + | chr3_2:46823973-46823992 | Msa0407810:intron | 45.0% | |
GGATCTAGGTTAGATCCACA+TGG | - | chr3_2:46824013-46824032 | None:intergenic | 45.0% | |
GAACGGAGAAGAAGAGAGAA+GGG | - | chr3_2:46824174-46824193 | None:intergenic | 45.0% | |
TGAACGGAGAAGAAGAGAGA+AGG | - | chr3_2:46824175-46824194 | None:intergenic | 45.0% | |
!! | TGCCGGTTTCTGGAATGAAA+CGG | + | chr3_2:46824202-46824221 | Msa0407810:intron | 45.0% |
GACCGTTTCATTCCAGAAAC+CGG | - | chr3_2:46824207-46824226 | None:intergenic | 45.0% | |
!! | GGTTTCTGGAATGAAACGGT+CGG | + | chr3_2:46824206-46824225 | Msa0407810:intron | 45.0% |
GTCTTGAACTCCGATCTACA+TGG | + | chr3_2:46824289-46824308 | Msa0407810:intron | 45.0% | |
! | CGTGGTTACCTGAGTTGAAA+TGG | + | chr3_2:46824550-46824569 | Msa0407810:intron | 45.0% |
TATGAATTCGTCGCTCACAG+TGG | + | chr3_2:46824708-46824727 | Msa0407810:intron | 45.0% | |
TCTGGAGAGAGAATGTGGAA+TGG | + | chr3_2:46824914-46824933 | Msa0407810:intron | 45.0% | |
!! | TTGAGTTGGCGGTTAGAGAA+TGG | + | chr3_2:46824943-46824962 | Msa0407810:intron | 45.0% |
CATTGGGTCTCAAGTACACA+TGG | - | chr3_2:46825012-46825031 | None:intergenic | 45.0% | |
GAAATGACCAAAATGCCCCT+AGG | + | chr3_2:46825423-46825442 | Msa0407810:intron | 45.0% | |
!!! | TTTAGTCCCTAGGGGCATTT+TGG | - | chr3_2:46825433-46825452 | None:intergenic | 45.0% |
CAGAATTCTCCTTCCAACGA+GGG | - | chr3_2:46826057-46826076 | None:intergenic | 45.0% | |
TGGAAGGAGAATTCTGCTGT+TGG | + | chr3_2:46826061-46826080 | Msa0407810:intron | 45.0% | |
GGAAGGAGAATTCTGCTGTT+GGG | + | chr3_2:46826062-46826081 | Msa0407810:intron | 45.0% | |
TTTGCCATACCTGTTGCACA+TGG | - | chr3_2:46826563-46826582 | None:intergenic | 45.0% | |
! | TCCGATTTTTCGCTCTATGG+AGG | + | chr3_2:46826601-46826620 | Msa0407810:CDS | 45.0% |
!! | TAAAAATAAAAAAATTAGTA+AGG | - | chr3_2:46821431-46821450 | None:intergenic | 5.0% |
!!! | ATAATAAAATTTGTTAAAAT+TGG | + | chr3_2:46825286-46825305 | Msa0407810:intron | 5.0% |
CGTGTTCCGCCAGTTAGTAA+TGG | + | chr3_2:46820639-46820658 | Msa0407810:CDS | 50.0% | |
! | TGGAATGTGATGGAGTGGGA+TGG | + | chr3_2:46821747-46821766 | Msa0407810:intron | 50.0% |
TTGGGGGGAATGAAAAGTGG+AGG | - | chr3_2:46821875-46821894 | None:intergenic | 50.0% | |
TGGATACACCCCAAATTGGG+GGG | - | chr3_2:46821890-46821909 | None:intergenic | 50.0% | |
CGGGAACCTTGAAGAAGGAA+AGG | + | chr3_2:46821964-46821983 | Msa0407810:intron | 50.0% | |
! | GTTTTTCTATGGGGGTCGCT+TGG | - | chr3_2:46822030-46822049 | None:intergenic | 50.0% |
ACCCTTGAGAATCGAGGTTC+GGG | + | chr3_2:46822426-46822445 | Msa0407810:intron | 50.0% | |
TCCCGAACCTCGATTCTCAA+GGG | - | chr3_2:46822430-46822449 | None:intergenic | 50.0% | |
!! | GCCTCAAGGGCATAGGATTT+TGG | + | chr3_2:46822774-46822793 | Msa0407810:intron | 50.0% |
!! | AGGGCCTATGTAACGGACAA+TGG | - | chr3_2:46823087-46823106 | None:intergenic | 50.0% |
GACCGTAGGATTGATCCATG+TGG | + | chr3_2:46823995-46824014 | Msa0407810:intron | 50.0% | |
CACTCTCCACCATAGGATCT+AGG | - | chr3_2:46824027-46824046 | None:intergenic | 50.0% | |
! | ATCCTATGGTGGAGAGTGCA+GGG | + | chr3_2:46824029-46824048 | Msa0407810:intron | 50.0% |
TATAGAGGACTGAACCGGAC+CGG | - | chr3_2:46824073-46824092 | None:intergenic | 50.0% | |
AAACCGGCAGAGAAGGTGAA+CGG | - | chr3_2:46824191-46824210 | None:intergenic | 50.0% | |
ATTCCAGAAACCGGCAGAGA+AGG | - | chr3_2:46824198-46824217 | None:intergenic | 50.0% | |
! | TCGCCGGAATCTGGAATTCA+CGG | - | chr3_2:46824269-46824288 | None:intergenic | 50.0% |
CATCGCAAAAGGCTCAACGA+AGG | - | chr3_2:46824514-46824533 | None:intergenic | 50.0% | |
TCGGTTCAACACCTACCAGA+AGG | - | chr3_2:46824623-46824642 | None:intergenic | 50.0% | |
GGCGGTTAGAGAATGGTGAT+TGG | + | chr3_2:46824950-46824969 | Msa0407810:intron | 50.0% | |
ACACGTGGTAGGCACTCATT+GGG | - | chr3_2:46825028-46825047 | None:intergenic | 50.0% | |
AACACGTGGTAGGCACTCAT+TGG | - | chr3_2:46825029-46825048 | None:intergenic | 50.0% | |
GCAGAATTCTCCTTCCAACG+AGG | - | chr3_2:46826058-46826077 | None:intergenic | 50.0% | |
ATCTACGTGCCATGTGCAAC+AGG | + | chr3_2:46826551-46826570 | Msa0407810:intron | 50.0% | |
CGCTCTATGGAGGACAAACA+TGG | + | chr3_2:46826611-46826630 | Msa0407810:CDS | 50.0% | |
GCAAGCACAGCCCAAAAGAG+TGG | - | chr3_2:46820973-46820992 | None:intergenic | 55.0% | |
ACCTGCGGGAACCTTGAAGA+AGG | + | chr3_2:46821959-46821978 | Msa0407810:intron | 55.0% | |
TCCTTCTTCAAGGTTCCCGC+AGG | - | chr3_2:46821963-46821982 | None:intergenic | 55.0% | |
CTCCCGAACCTCGATTCTCA+AGG | - | chr3_2:46822431-46822450 | None:intergenic | 55.0% | |
GAGAATCGAGGTTCGGGAGT+TGG | + | chr3_2:46822432-46822451 | Msa0407810:intron | 55.0% | |
!! | CGAGGTTCGGGAGTTGGTTT+TGG | + | chr3_2:46822438-46822457 | Msa0407810:intron | 55.0% |
! | GAGAAAGGCCTCAAGGGCAT+AGG | + | chr3_2:46822767-46822786 | Msa0407810:intron | 55.0% |
! | GCATGTGTCGGTGCTTGTGT+CGG | + | chr3_2:46823045-46823064 | Msa0407810:intron | 55.0% |
GGATCTGGTTGTTTGGGCCT+GGG | - | chr3_2:46823952-46823971 | None:intergenic | 55.0% | |
TGGATCTGGTTGTTTGGGCC+TGG | - | chr3_2:46823953-46823972 | None:intergenic | 55.0% | |
! | GATCCTATGGTGGAGAGTGC+AGG | + | chr3_2:46824028-46824047 | Msa0407810:intron | 55.0% |
! | TCCTATGGTGGAGAGTGCAG+GGG | + | chr3_2:46824030-46824049 | Msa0407810:intron | 55.0% |
!!! | GGAGTGGACCGGTTTTGAAC+CGG | + | chr3_2:46824051-46824070 | Msa0407810:intron | 55.0% |
! | GAACCGGACCGGTTCAAAAC+CGG | - | chr3_2:46824062-46824081 | None:intergenic | 55.0% |
TCTCCGTTCACCTTCTCTGC+CGG | + | chr3_2:46824185-46824204 | Msa0407810:intron | 55.0% | |
!! | TCACCTTCTCTGCCGGTTTC+TGG | + | chr3_2:46824192-46824211 | Msa0407810:intron | 55.0% |
! | CCGGAATCTGGAATTCACGG+CGG | - | chr3_2:46824266-46824285 | None:intergenic | 55.0% |
CCGCCGTGAATTCCAGATTC+CGG | + | chr3_2:46824263-46824282 | Msa0407810:intron | 55.0% | |
GTTCAAGACTCGCCGGAATC+TGG | - | chr3_2:46824278-46824297 | None:intergenic | 55.0% | |
GATCGGAGTTCAAGACTCGC+CGG | - | chr3_2:46824285-46824304 | None:intergenic | 55.0% | |
TGAGTGCCTACCACGTGTTC+TGG | + | chr3_2:46825030-46825049 | Msa0407810:intron | 55.0% | |
GCAAGTCCAGAACACGTGGT+AGG | - | chr3_2:46825039-46825058 | None:intergenic | 55.0% | |
CAAGGCAAGTCCAGAACACG+TGG | - | chr3_2:46825043-46825062 | None:intergenic | 55.0% | |
! | CACGTGTTCTGGACTTGCCT+TGG | + | chr3_2:46825041-46825060 | Msa0407810:intron | 55.0% |
CGTGCCATGTGCAACAGGTA+TGG | + | chr3_2:46826556-46826575 | Msa0407810:intron | 55.0% | |
TACGGTCCCTGAAGCTCCTG+AGG | - | chr3_2:46823982-46824001 | None:intergenic | 60.0% | |
TCAGGAGCTTCAGGGACCGT+AGG | + | chr3_2:46823981-46824000 | Msa0407810:intron | 60.0% | |
TCCCCTGCACTCTCCACCAT+AGG | - | chr3_2:46824034-46824053 | None:intergenic | 60.0% | |
!!! | GGACCGGTTTTGAACCGGTC+CGG | + | chr3_2:46824056-46824075 | Msa0407810:intron | 60.0% |
TTCCAACGAGGGCCCCGTTA+AGG | - | chr3_2:46826046-46826065 | None:intergenic | 60.0% | |
TTAACGGGGCCCTCGTTGGA+AGG | + | chr3_2:46826045-46826064 | Msa0407810:intron | 60.0% | |
! | TGGTGGAGAGTGCAGGGGAG+TGG | + | chr3_2:46824035-46824054 | Msa0407810:intron | 65.0% |
! | GAGAGTGCAGGGGAGTGGAC+CGG | + | chr3_2:46824040-46824059 | Msa0407810:intron | 65.0% |
CACCTTAACGGGGCCCTCGT+TGG | + | chr3_2:46826041-46826060 | Msa0407810:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_2 | gene | 46820317 | 46826980 | 46820317 | ID=Msa0407810;Name=Msa0407810 |
chr3_2 | mRNA | 46820317 | 46826980 | 46820317 | ID=Msa0407810-mRNA-1;Parent=Msa0407810;Name=Msa0407810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|1|1|0.5|0.33|3|250|250 |
chr3_2 | exon | 46820317 | 46820500 | 46820317 | ID=Msa0407810-mRNA-1:exon:9019;Parent=Msa0407810-mRNA-1 |
chr3_2 | exon | 46820635 | 46821108 | 46820635 | ID=Msa0407810-mRNA-1:exon:9020;Parent=Msa0407810-mRNA-1 |
chr3_2 | exon | 46826573 | 46826980 | 46826573 | ID=Msa0407810-mRNA-1:exon:9021;Parent=Msa0407810-mRNA-1 |
chr3_2 | five_prime_UTR | 46820317 | 46820379 | 46820317 | ID=Msa0407810-mRNA-1:five_prime_utr;Parent=Msa0407810-mRNA-1 |
chr3_2 | CDS | 46820380 | 46820500 | 46820380 | ID=Msa0407810-mRNA-1:cds;Parent=Msa0407810-mRNA-1 |
chr3_2 | CDS | 46820635 | 46821108 | 46820635 | ID=Msa0407810-mRNA-1:cds;Parent=Msa0407810-mRNA-1 |
chr3_2 | CDS | 46826573 | 46826730 | 46826573 | ID=Msa0407810-mRNA-1:cds;Parent=Msa0407810-mRNA-1 |
chr3_2 | three_prime_UTR | 46826731 | 46826980 | 46826731 | ID=Msa0407810-mRNA-1:three_prime_utr;Parent=Msa0407810-mRNA-1 |
Gene Sequence |
Protein sequence |