AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0407810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0407810 MtrunA17_Chr3g0098291 70.000 240 64 5 15 250 1 236 6.48e-111 318
Msa0407810 MtrunA17_Chr3g0098521 77.124 153 35 0 49 201 1 153 2.68e-84 248
Msa0407810 MtrunA17_Chr3g0098491 76.159 151 36 0 49 199 1 151 3.55e-81 240
Msa0407810 MtrunA17_Chr3g0102001 49.772 219 97 4 43 249 21 238 2.10e-57 194
Msa0407810 MtrunA17_Chr3g0098541 52.406 187 80 2 72 249 5 191 3.75e-56 183
Msa0407810 MtrunA17_Chr5g0439061 44.340 212 104 5 50 249 29 238 4.66e-43 155
Msa0407810 MtrunA17_Chr5g0439071 40.476 210 114 3 46 247 25 231 1.07e-41 149
Msa0407810 MtrunA17_Chr5g0439021 41.615 161 84 3 46 199 25 182 3.06e-32 116
Msa0407810 MtrunA17_Chr2g0286601 35.294 204 126 3 49 249 14 214 5.54e-28 112
Msa0407810 MtrunA17_Chr2g0286571 36.098 205 123 4 49 249 14 214 5.77e-28 108
Msa0407810 MtrunA17_Chr2g0286551 34.804 204 127 3 49 249 14 214 1.89e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 42 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTTGAAATGCTTAATAAT+TGG 0.224355 3_2:+46826914 Msa0407810:three_prime_UTR
AGGGAGAAACACCACTCTTT+TGG 0.238209 3_2:+46820959 Msa0407810:CDS
TGAGACTGAATCATAGAATT+AGG 0.239693 3_2:-46820428 None:intergenic
TGAGGCTGAATCATAGAATT+AGG 0.314261 3_2:-46820386 None:intergenic
TCATTGGAGAAGATGGTAAA+AGG 0.344288 3_2:+46820908 Msa0407810:CDS
TAAGTTTCAAACTTCCGAAA+TGG 0.365986 3_2:+46820361 Msa0407810:exon
TTCATCTTCATCTTCATCTT+CGG 0.366491 3_2:-46820459 None:intergenic
ATTTGTCTTCCATTACTAAC+TGG 0.368328 3_2:-46820648 None:intergenic
CATAGAATTAGGATCCATTT+CGG 0.382498 3_2:-46820375 None:intergenic
GCCATTCATAGAGAAATATT+CGG 0.388945 3_2:+46821087 Msa0407810:CDS
ATAGCAAGATTGATATCATA+TGG 0.409074 3_2:-46821033 None:intergenic
CTCTTGAACTTCTTGCTACT+AGG 0.427415 3_2:+46826642 Msa0407810:CDS
GTTAGTAATGGAAGACAAAT+GGG 0.435267 3_2:+46820651 Msa0407810:CDS
AGTTAGTAATGGAAGACAAA+TGG 0.436776 3_2:+46820650 Msa0407810:CDS
GAATAAGATCAATGAGAGAT+GGG 0.438781 3_2:-46820323 None:intergenic
AGTATATGTGAATGTATCAT+TGG 0.446416 3_2:+46820892 Msa0407810:CDS
AGAATAAGATCAATGAGAGA+TGG 0.458559 3_2:-46820324 None:intergenic
ACCGAATATTTCTCTATGAA+TGG 0.459441 3_2:-46821088 None:intergenic
TTCATTTCATCTTCATCTTG+AGG 0.482522 3_2:-46820404 None:intergenic
CTTCATAGTGCAGCATATAG+AGG 0.496464 3_2:+46820862 Msa0407810:CDS
AGAGTGGAAATAAGCTATCA+TGG 0.522573 3_2:+46826678 Msa0407810:CDS
CGCTCTATGGAGGACAAACA+TGG 0.524121 3_2:+46826611 Msa0407810:CDS
ATGAATGGCAACGTGAAGAA+TGG 0.528135 3_2:-46821073 None:intergenic
CTAGTAGCAAGAAGTTCAAG+AGG 0.536869 3_2:-46826641 None:intergenic
AAACTGATGTAGGTAAAGAA+AGG 0.539480 3_2:-46821007 None:intergenic
GATCAATGAGAGATGGGTAG+TGG 0.544099 3_2:-46820317 None:intergenic
CGTGTTCCGCCAGTTAGTAA+TGG 0.552591 3_2:+46820639 Msa0407810:CDS
GTAAGCAATGCCTACAAAGA+TGG 0.555466 3_2:+46820757 Msa0407810:CDS
AGGAAATCAGCTTTCAAGAG+TGG 0.555521 3_2:+46826662 Msa0407810:CDS
TAGCAAGATTGATATCATAT+GGG 0.563968 3_2:-46821032 None:intergenic
CTATATGCTGCACTATGAAG+AGG 0.567355 3_2:-46820859 None:intergenic
CATTACTAACTGGCGGAACA+CGG 0.570660 3_2:-46820638 None:intergenic
GAAGATTATGACTCTCAAGA+TGG 0.573204 3_2:+46820479 Msa0407810:CDS
GACTTGTAGATGCAATAGAA+AGG 0.582410 3_2:+46820788 Msa0407810:CDS
GAATGTATCATTGGAGAAGA+TGG 0.599648 3_2:+46820901 Msa0407810:CDS
GAAAGGCATGGTGATCTAAG+TGG 0.601066 3_2:+46820805 Msa0407810:CDS
GCAAGCACAGCCCAAAAGAG+TGG 0.605571 3_2:-46820970 None:intergenic
AATCTTGCTATCAATAACAA+TGG 0.617874 3_2:+46821045 Msa0407810:CDS
TGTCTTCCATTACTAACTGG+CGG 0.631097 3_2:-46820645 None:intergenic
GTAGATGCAATAGAAAGGCA+TGG 0.659549 3_2:+46820793 Msa0407810:CDS
AAGAGGAACAGCATTACATG+TGG 0.700334 3_2:+46820732 Msa0407810:CDS
GTGGAAATAAGCTATCATGG+TGG 0.721299 3_2:+46826681 Msa0407810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr3_2:46826744-46826763 Msa0407810:three_prime_UTR 0.0%
!!! TTTTTTTTTTTTTTAGGTTT+AGG - chr3_2:46821305-46821324 None:intergenic 10.0%
!!! AGGTTTTTTTTTTTTTTTTT+AGG - chr3_2:46821311-46821330 None:intergenic 10.0%
!! TTAATTATTTAAAGAAAAGT+GGG + chr3_2:46821573-46821592 Msa0407810:intron 10.0%
!! ATTATAAAATTTCATTCTAT+TGG - chr3_2:46821910-46821929 None:intergenic 10.0%
!!! ATAATCGAAAATTAAATTTT+TGG - chr3_2:46822105-46822124 None:intergenic 10.0%
!! TCATTTATTAAGAAAATAAA+AGG + chr3_2:46822857-46822876 Msa0407810:intron 10.0%
!! CATTTATTAAGAAAATAAAA+GGG + chr3_2:46822858-46822877 Msa0407810:intron 10.0%
!!! TTGATATTATGATAAATTTT+AGG - chr3_2:46823400-46823419 None:intergenic 10.0%
!!! AATTTTTGTAGATTTTTAAA+AGG + chr3_2:46823835-46823854 Msa0407810:intron 10.0%
!! TTAATTAATCACAAAAATGT+TGG - chr3_2:46820560-46820579 None:intergenic 15.0%
!!! TTTTCACAAGATAAAAATAA+AGG + chr3_2:46820708-46820727 Msa0407810:CDS 15.0%
!! TTTCACAAGATAAAAATAAA+GGG + chr3_2:46820709-46820728 Msa0407810:CDS 15.0%
!! AAGCAGTTTAAATATAATAA+TGG + chr3_2:46821228-46821247 Msa0407810:intron 15.0%
!!! ACTTAATCCATAATAATTTT+AGG - chr3_2:46821341-46821360 None:intergenic 15.0%
!! AATAAAAAAATTAGTAAGGA+AGG - chr3_2:46821427-46821446 None:intergenic 15.0%
!! CTTAATTATTTAAAGAAAAG+TGG + chr3_2:46821572-46821591 Msa0407810:intron 15.0%
!!! AATTTTTGTTTTATTGAACT+TGG + chr3_2:46822618-46822637 Msa0407810:intron 15.0%
!!! ACAAAAACAAAAACTTTTTT+TGG - chr3_2:46822705-46822724 None:intergenic 15.0%
!!! AAAAAAGTTTTTGTTTTTGT+TGG + chr3_2:46822705-46822724 Msa0407810:intron 15.0%
!!! GTTGATTTTAATTTTGAAAA+TGG + chr3_2:46822727-46822746 Msa0407810:intron 15.0%
!! TAACAAAATTCTTAACATAA+AGG + chr3_2:46823362-46823381 Msa0407810:intron 15.0%
!!! AGATTTTTAAAAGGATTTTT+AGG + chr3_2:46823844-46823863 Msa0407810:intron 15.0%
!!! AGTTGTTAAAATTTACATTT+TGG - chr3_2:46825223-46825242 None:intergenic 15.0%
!!! AAATGTAAATTTTAACAACT+TGG + chr3_2:46825223-46825242 Msa0407810:intron 15.0%
!! AAATGAAAATAACAGAAAAT+AGG + chr3_2:46825253-46825272 Msa0407810:intron 15.0%
!! AATGAAAATAACAGAAAATA+GGG + chr3_2:46825254-46825273 Msa0407810:intron 15.0%
!! ACAAAAATAAAATCAACAAA+AGG + chr3_2:46825335-46825354 Msa0407810:intron 15.0%
!! AAAAATAAGAAAGGTTAAAA+TGG + chr3_2:46826016-46826035 Msa0407810:intron 15.0%
!!! TATATTAATTGATAATGAGT+TGG - chr3_2:46826270-46826289 None:intergenic 15.0%
!!! AATTAATCAGCTTTTATTTA+TGG - chr3_2:46826311-46826330 None:intergenic 15.0%
!!! ACTTTGAAATTTTATTCTTA+AGG - chr3_2:46826405-46826424 None:intergenic 15.0%
!!! TAGATATTTTGATATATCAT+TGG + chr3_2:46826956-46826975 Msa0407810:three_prime_UTR 15.0%
!! AAACTCTCCTTATATTTATT+AGG + chr3_2:46820509-46820528 Msa0407810:intron 20.0%
!! TAAAGAGCCTAATAAATATA+AGG - chr3_2:46820519-46820538 None:intergenic 20.0%
!! ATTAGAGTAAAAAATGCAAA+GGG + chr3_2:46820940-46820959 Msa0407810:CDS 20.0%
!!! CTTACTTTCTTTTTATTTGT+CGG + chr3_2:46821159-46821178 Msa0407810:intron 20.0%
!!! AATTTTAAGTCAAAAACACA+AGG + chr3_2:46821251-46821270 Msa0407810:intron 20.0%
!!! TTTTTTTTTAGGTTTAGGAA+AGG - chr3_2:46821300-46821319 None:intergenic 20.0%
!!! AATCCATAATAATTTTAGGT+AGG - chr3_2:46821337-46821356 None:intergenic 20.0%
!! ATCAAAAAAAAAACTTGTGT+GGG - chr3_2:46821511-46821530 None:intergenic 20.0%
!! TATCAAAAAAAAAACTTGTG+TGG - chr3_2:46821512-46821531 None:intergenic 20.0%
!!! TTATTTAAAACTTGTAGTTG+GGG - chr3_2:46821651-46821670 None:intergenic 20.0%
!!! GTTATTTAAAACTTGTAGTT+GGG - chr3_2:46821652-46821671 None:intergenic 20.0%
!!! TGTTATTTAAAACTTGTAGT+TGG - chr3_2:46821653-46821672 None:intergenic 20.0%
!!! CTACAAGTTTTAAATAACAA+AGG + chr3_2:46821654-46821673 Msa0407810:intron 20.0%
!! TGATAAATAATTATGTTCCA+TGG + chr3_2:46821777-46821796 Msa0407810:intron 20.0%
!!! AAAAGTAGAAGTTTTTCTAT+GGG - chr3_2:46822040-46822059 None:intergenic 20.0%
!! TTAAATCTAGATTGTTAGTT+TGG - chr3_2:46822063-46822082 None:intergenic 20.0%
!! AAGAAAAAATGAGATATCAA+AGG - chr3_2:46822384-46822403 None:intergenic 20.0%
!!! TTTGATATCTCATTTTTTCT+TGG + chr3_2:46822383-46822402 Msa0407810:intron 20.0%
!!! TTGATATCTCATTTTTTCTT+GGG + chr3_2:46822384-46822403 Msa0407810:intron 20.0%
!!! TGATTAGTTATTTTGCAAAA+AGG + chr3_2:46822810-46822829 Msa0407810:intron 20.0%
!! AAATAAAAGGGAAAATTCAA+TGG + chr3_2:46822870-46822889 Msa0407810:intron 20.0%
!! AATAAAAGGGAAAATTCAAT+GGG + chr3_2:46822871-46822890 Msa0407810:intron 20.0%
!! AAATAAAGTACAAAAAACCT+AGG + chr3_2:46823147-46823166 Msa0407810:intron 20.0%
!!! CATTTATTTTTTTCTTGCAA+AGG - chr3_2:46823188-46823207 None:intergenic 20.0%
!! CTTTGCAAGAAAAAAATAAA+TGG + chr3_2:46823186-46823205 Msa0407810:intron 20.0%
!! AAAATAAAGCTATAGAAATG+AGG + chr3_2:46823213-46823232 Msa0407810:intron 20.0%
!! AAATAAAGCTATAGAAATGA+GGG + chr3_2:46823214-46823233 Msa0407810:intron 20.0%
!!! ATATCATGACAATTTTTCAA+AGG + chr3_2:46823445-46823464 Msa0407810:intron 20.0%
!!! GATACATTTTTAGATACATT+TGG + chr3_2:46823523-46823542 Msa0407810:intron 20.0%
!!! TCTGCAATTTTTGAAAATAA+AGG + chr3_2:46825170-46825189 Msa0407810:intron 20.0%
!!! TTTTTGAAAATAAAGGACAA+AGG + chr3_2:46825177-46825196 Msa0407810:intron 20.0%
!!! TTTTGAAAATAAAGGACAAA+GGG + chr3_2:46825178-46825197 Msa0407810:intron 20.0%
!!! TTTTGAAAGGTTTTTTAACA+TGG + chr3_2:46825469-46825488 Msa0407810:intron 20.0%
!! TTGCAAAAATTCATGAAAAA+GGG - chr3_2:46825589-46825608 None:intergenic 20.0%
!! TTTGCAAAAATTCATGAAAA+AGG - chr3_2:46825590-46825609 None:intergenic 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + chr3_2:46825869-46825888 Msa0407810:intron 20.0%
!!! ACCTTTCTTATTTTTAATAG+CGG - chr3_2:46826011-46826030 None:intergenic 20.0%
!! TTAATAAAGAAATTCTCCTA+TGG + chr3_2:46826461-46826480 Msa0407810:intron 20.0%
!! TTTAGATTAAACTTTACCAT+AGG - chr3_2:46826480-46826499 None:intergenic 20.0%
!!! GATATATACAGTAAGAATTT+TGG - chr3_2:46826522-46826541 None:intergenic 20.0%
!!! ATTTTTTATGCGCATATATA+TGG + chr3_2:46826830-46826849 Msa0407810:three_prime_UTR 20.0%
!! AAGCATTTCAAATGAAAAAT+TGG - chr3_2:46826908-46826927 None:intergenic 20.0%
!!! CATTTGAAATGCTTAATAAT+TGG + chr3_2:46826914-46826933 Msa0407810:three_prime_UTR 20.0%
! AAGATAAAAATAAAGGGAAG+AGG + chr3_2:46820715-46820734 Msa0407810:CDS 25.0%
! AGTATATGTGAATGTATCAT+TGG + chr3_2:46820892-46820911 Msa0407810:CDS 25.0%
! GATTAGAGTAAAAAATGCAA+AGG + chr3_2:46820939-46820958 Msa0407810:CDS 25.0%
! TAGCAAGATTGATATCATAT+GGG - chr3_2:46821035-46821054 None:intergenic 25.0%
! ATAGCAAGATTGATATCATA+TGG - chr3_2:46821036-46821055 None:intergenic 25.0%
!! AATCTTGCTATCAATAACAA+TGG + chr3_2:46821045-46821064 Msa0407810:CDS 25.0%
!!! TAATAATTTTAGGTAGGTGT+AGG - chr3_2:46821331-46821350 None:intergenic 25.0%
! ACACCTACCTAAAATTATTA+TGG + chr3_2:46821331-46821350 Msa0407810:intron 25.0%
! GTGAATGTAAATAATCAAGT+GGG - chr3_2:46821376-46821395 None:intergenic 25.0%
! AGTGAATGTAAATAATCAAG+TGG - chr3_2:46821377-46821396 None:intergenic 25.0%
!! TATTTAAAACTTGTAGTTGG+GGG - chr3_2:46821650-46821669 None:intergenic 25.0%
! AATAATTATGTTCCATGGTT+TGG + chr3_2:46821782-46821801 Msa0407810:intron 25.0%
! TTGGATTTGCAAAAACTAAA+TGG + chr3_2:46821801-46821820 Msa0407810:intron 25.0%
! TTTGCAAAAACTAAATGGAA+TGG + chr3_2:46821806-46821825 Msa0407810:intron 25.0%
! AAAAACTAAATGGAATGGAA+TGG + chr3_2:46821811-46821830 Msa0407810:intron 25.0%
!! AAAGTAGAAGTTTTTCTATG+GGG - chr3_2:46822039-46822058 None:intergenic 25.0%
!! GAAAAGTAGAAGTTTTTCTA+TGG - chr3_2:46822041-46822060 None:intergenic 25.0%
!! TAATTTTCACAATAGTCAGT+TGG - chr3_2:46822208-46822227 None:intergenic 25.0%
!!! AATTCTCTTTAAGGTGATTT+TGG - chr3_2:46822241-46822260 None:intergenic 25.0%
! AGCAGATTTAATTCTCTTTA+AGG - chr3_2:46822250-46822269 None:intergenic 25.0%
!! ACTTTTATTACCAATCAACA+AGG + chr3_2:46822293-46822312 Msa0407810:intron 25.0%
!!! ACTGTTTTATCTTGGTTTTT+CGG + chr3_2:46822324-46822343 Msa0407810:intron 25.0%
! TGAGATATCAAAGGTTAAAA+AGG - chr3_2:46822375-46822394 None:intergenic 25.0%
! AAAAACGTTATTTACACCTA+AGG + chr3_2:46822555-46822574 Msa0407810:intron 25.0%
! AAAACGTTATTTACACCTAA+GGG + chr3_2:46822556-46822575 Msa0407810:intron 25.0%
!!! TTTTGAAGAATAAGAGAGAA+AGG + chr3_2:46822752-46822771 Msa0407810:intron 25.0%
!! TAATTTTCCAAAGAAACCTT+GGG - chr3_2:46822905-46822924 None:intergenic 25.0%
!! ATAATTTTCCAAAGAAACCT+TGG - chr3_2:46822906-46822925 None:intergenic 25.0%
! GGATACTTTAGATGTATATA+GGG - chr3_2:46823012-46823031 None:intergenic 25.0%
! TGGATACTTTAGATGTATAT+AGG - chr3_2:46823013-46823032 None:intergenic 25.0%
! AATAAAGCTATAGAAATGAG+GGG + chr3_2:46823215-46823234 Msa0407810:intron 25.0%
! TGAATGAAACATGAAATGAA+AGG + chr3_2:46823258-46823277 Msa0407810:intron 25.0%
! GAATGAAACATGAAATGAAA+GGG + chr3_2:46823259-46823278 Msa0407810:intron 25.0%
! GAGTAGAAATTATAAGCAAA+AGG + chr3_2:46823303-46823322 Msa0407810:intron 25.0%
! TGAAAAATTGTCATGATATG+AGG - chr3_2:46823444-46823463 None:intergenic 25.0%
!!! TTTAAAAGGATTTTTAGGCA+TGG + chr3_2:46823849-46823868 Msa0407810:intron 25.0%
! GTGAAAAATAGAGTAGTTTA+GGG - chr3_2:46824322-46824341 None:intergenic 25.0%
! TGTGAAAAATAGAGTAGTTT+AGG - chr3_2:46824323-46824342 None:intergenic 25.0%
!!! ACTCTGATTTGGAAAATAAA+CGG + chr3_2:46824359-46824378 Msa0407810:intron 25.0%
! GGTTTGTAAATACGAATAAA+CGG - chr3_2:46824493-46824512 None:intergenic 25.0%
! TGATGATATGACCTTTATAT+AGG + chr3_2:46824983-46825002 Msa0407810:intron 25.0%
!!! CTTTTTTTCAAATTGCAGTT+TGG - chr3_2:46825116-46825135 None:intergenic 25.0%
! CAAACTGCAATTTGAAAAAA+AGG + chr3_2:46825114-46825133 Msa0407810:intron 25.0%
! AACAAAGACTTGAAACTTAA+AGG + chr3_2:46825142-46825161 Msa0407810:intron 25.0%
!!! TGTAAATTTTAACAACTTGG+AGG + chr3_2:46825226-46825245 Msa0407810:intron 25.0%
!! ACTCAAATGCAATTTTTGAA+AGG + chr3_2:46825456-46825475 Msa0407810:intron 25.0%
! ATTAAAATGAGTTTGAATGC+AGG + chr3_2:46825549-46825568 Msa0407810:intron 25.0%
!! CATTTAAAACCATCCAAAAA+GGG - chr3_2:46825687-46825706 None:intergenic 25.0%
! TAAAATATGCAGATAAAGCA+TGG + chr3_2:46825759-46825778 Msa0407810:intron 25.0%
! ATAAAGCATGGTAAAATATC+AGG + chr3_2:46825771-46825790 Msa0407810:intron 25.0%
! TAAAGCATGGTAAAATATCA+GGG + chr3_2:46825772-46825791 Msa0407810:intron 25.0%
!! CATTTTGAGCAAGTATTTTT+AGG + chr3_2:46825856-46825875 Msa0407810:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + chr3_2:46825868-46825887 Msa0407810:intron 25.0%
! ACAACTTATGTTCTTGTTAA+CGG - chr3_2:46826091-46826110 None:intergenic 25.0%
! AAATGTATTTACCAACGTTA+TGG - chr3_2:46826142-46826161 None:intergenic 25.0%
GAATAAGATCAATGAGAGAT+GGG - chr3_2:46820326-46820345 None:intergenic 30.0%
AGAATAAGATCAATGAGAGA+TGG - chr3_2:46820327-46820346 None:intergenic 30.0%
TAAGTTTCAAACTTCCGAAA+TGG + chr3_2:46820361-46820380 Msa0407810:exon 30.0%
CATAGAATTAGGATCCATTT+CGG - chr3_2:46820378-46820397 None:intergenic 30.0%
TTCATTTCATCTTCATCTTG+AGG - chr3_2:46820407-46820426 None:intergenic 30.0%
TGAGACTGAATCATAGAATT+AGG - chr3_2:46820431-46820450 None:intergenic 30.0%
TTCATCTTCATCTTCATCTT+CGG - chr3_2:46820462-46820481 None:intergenic 30.0%
ATTTGTCTTCCATTACTAAC+TGG - chr3_2:46820651-46820670 None:intergenic 30.0%
! AGTTAGTAATGGAAGACAAA+TGG + chr3_2:46820650-46820669 Msa0407810:CDS 30.0%
! GTTAGTAATGGAAGACAAAT+GGG + chr3_2:46820651-46820670 Msa0407810:CDS 30.0%
! GGTAAAGAAAGGTCTTTTTA+TGG - chr3_2:46820999-46821018 None:intergenic 30.0%
AAACTGATGTAGGTAAAGAA+AGG - chr3_2:46821010-46821029 None:intergenic 30.0%
GCCATTCATAGAGAAATATT+CGG + chr3_2:46821087-46821106 Msa0407810:CDS 30.0%
ACCGAATATTTCTCTATGAA+TGG - chr3_2:46821091-46821110 None:intergenic 30.0%
GTGTAAATAACTAGTAAGGT+AGG - chr3_2:46821465-46821484 None:intergenic 30.0%
GTGAGTGTAAATAACTAGTA+AGG - chr3_2:46821469-46821488 None:intergenic 30.0%
TGGGTGTAAATTAACAAAGT+GGG + chr3_2:46821592-46821611 Msa0407810:intron 30.0%
AAGTTGCTAATTTACTCCTT+AGG + chr3_2:46821710-46821729 Msa0407810:intron 30.0%
GGAATGGAATGGTATATAAT+TGG + chr3_2:46821822-46821841 Msa0407810:intron 30.0%
TTTGATGGAATAAGATGGAA+TGG - chr3_2:46821851-46821870 None:intergenic 30.0%
AATAGAAGAAATGATACCTG+CGG + chr3_2:46821944-46821963 Msa0407810:intron 30.0%
! AAGTAGAAGTTTTTCTATGG+GGG - chr3_2:46822038-46822057 None:intergenic 30.0%
GATTTAATATGATCAACCAG+AGG + chr3_2:46822076-46822095 Msa0407810:intron 30.0%
!! ATTAAATTTTTGGACACCTC+TGG - chr3_2:46822095-46822114 None:intergenic 30.0%
GAAAAACCAAGATAAAACAG+TGG - chr3_2:46822325-46822344 None:intergenic 30.0%
!! CTGTTTTATCTTGGTTTTTC+GGG + chr3_2:46822325-46822344 Msa0407810:intron 30.0%
!!! TATCTCATTTTTTCTTGGGA+AGG + chr3_2:46822388-46822407 Msa0407810:intron 30.0%
!!! ATCTCATTTTTTCTTGGGAA+GGG + chr3_2:46822389-46822408 Msa0407810:intron 30.0%
TAGGATACTATAGTTGCTAT+AGG - chr3_2:46822483-46822502 None:intergenic 30.0%
TAGCAACTATAGTATCCTAT+AGG + chr3_2:46822484-46822503 Msa0407810:intron 30.0%
!!! TTTTTTGGAAGAGAACTACA+TGG - chr3_2:46822690-46822709 None:intergenic 30.0%
!! ATAGGATTTTGGAAAATGTG+AGG + chr3_2:46822785-46822804 Msa0407810:intron 30.0%
! TATGCTTTAGATGTATGCTT+AGG - chr3_2:46822985-46823004 None:intergenic 30.0%
GTAGCAAAAACTTGACAAAA+AGG + chr3_2:46823339-46823358 Msa0407810:intron 30.0%
TGTCATGATATGAGGATTAT+AGG - chr3_2:46823436-46823455 None:intergenic 30.0%
AACAGCATGTATCAAGAATT+AGG + chr3_2:46823673-46823692 Msa0407810:intron 30.0%
!! TTCATTTTGTGATGTTTCTG+TGG - chr3_2:46823800-46823819 None:intergenic 30.0%
TACGAATATGAACTCTGATT+TGG + chr3_2:46824348-46824367 Msa0407810:intron 30.0%
!!! CTTTTTCAAAGTCTTTTCGA+AGG + chr3_2:46824432-46824451 Msa0407810:intron 30.0%
GATTCGAACAAAGAAATCTT+CGG + chr3_2:46824574-46824593 Msa0407810:intron 30.0%
GTGTTGAACCGAAAATAAAT+CGG + chr3_2:46824631-46824650 Msa0407810:intron 30.0%
!!! AGGAATCACCGATTTATTTT+CGG - chr3_2:46824642-46824661 None:intergenic 30.0%
ATGAATCATCATCATTGAAC+CGG - chr3_2:46824761-46824780 None:intergenic 30.0%
! TTTGCTTCAATTTTGTGTTC+TGG + chr3_2:46824819-46824838 Msa0407810:intron 30.0%
!!! ATTTTGTGTTCTGGAAAGTT+AGG + chr3_2:46824828-46824847 Msa0407810:intron 30.0%
!!! TTTTGTGTTCTGGAAAGTTA+GGG + chr3_2:46824829-46824848 Msa0407810:intron 30.0%
!! ATTCTTGGTGTTCTTGAAAA+CGG + chr3_2:46824871-46824890 Msa0407810:intron 30.0%
!! AGGATTTTGATCTTTGATTC+TGG + chr3_2:46824896-46824915 Msa0407810:intron 30.0%
TAAGTCCATAATTTAGTCCA+AGG - chr3_2:46825061-46825080 None:intergenic 30.0%
TTGGACTAAATTATGGACTT+AGG + chr3_2:46825060-46825079 Msa0407810:intron 30.0%
AAGTTTGTCAAATTGCAGAA+AGG - chr3_2:46825087-46825106 None:intergenic 30.0%
CTGCAATTTGACAAACTTAT+AGG + chr3_2:46825089-46825108 Msa0407810:intron 30.0%
AATGAACCAACTACAAAATG+AGG + chr3_2:46825363-46825382 Msa0407810:intron 30.0%
! TAAGTACCTCATTTTGTAGT+TGG - chr3_2:46825372-46825391 None:intergenic 30.0%
!! CATAAAATTTTGACAGAGAG+AGG - chr3_2:46825402-46825421 None:intergenic 30.0%
AGACAAATTCAAATGACTTG+AGG + chr3_2:46825651-46825670 Msa0407810:intron 30.0%
! GCATTTAAAACCATCCAAAA+AGG - chr3_2:46825688-46825707 None:intergenic 30.0%
AGGGTAAAACAATAGCAAAT+TGG + chr3_2:46825791-46825810 Msa0407810:intron 30.0%
! TGGATGTTATACCCTAATTT+TGG - chr3_2:46825883-46825902 None:intergenic 30.0%
!!! TTCTTATTTTTAATAGCGGC+CGG - chr3_2:46826007-46826026 None:intergenic 30.0%
GCCGCTATTAAAAATAAGAA+AGG + chr3_2:46826007-46826026 Msa0407810:intron 30.0%
GTTAAAATGGATCACCTTAA+CGG + chr3_2:46826029-46826048 Msa0407810:intron 30.0%
TTAAAATGGATCACCTTAAC+GGG + chr3_2:46826030-46826049 Msa0407810:intron 30.0%
! TATGGTCGTCAAATTTTTGA+CGG - chr3_2:46826293-46826312 None:intergenic 30.0%
TGAGGCTGAATCATAGAATT+AGG - chr3_2:46820389-46820408 None:intergenic 35.0%
GAAGATTATGACTCTCAAGA+TGG + chr3_2:46820479-46820498 Msa0407810:CDS 35.0%
! TCGTTTTACACCATCTTTGT+AGG - chr3_2:46820770-46820789 None:intergenic 35.0%
GACTTGTAGATGCAATAGAA+AGG + chr3_2:46820788-46820807 Msa0407810:CDS 35.0%
GAATGTATCATTGGAGAAGA+TGG + chr3_2:46820901-46820920 Msa0407810:CDS 35.0%
TCATTGGAGAAGATGGTAAA+AGG + chr3_2:46820908-46820927 Msa0407810:CDS 35.0%
CATATGGGAAAAACTGATGT+AGG - chr3_2:46821020-46821039 None:intergenic 35.0%
GTAAATAATCAAGTGGGTGT+AGG - chr3_2:46821370-46821389 None:intergenic 35.0%
GTGGGTGTAAATTAACAAAG+TGG + chr3_2:46821591-46821610 Msa0407810:intron 35.0%
CATCAATCAAACACAACCTA+AGG - chr3_2:46821729-46821748 None:intergenic 35.0%
! CTTAGGTTGTGTTTGATTGA+TGG + chr3_2:46821727-46821746 Msa0407810:intron 35.0%
GTTTGATTGATGGAATGTGA+TGG + chr3_2:46821737-46821756 Msa0407810:intron 35.0%
! GTTTTTGCAAATCCAAACCA+TGG - chr3_2:46821797-46821816 None:intergenic 35.0%
GAGGATTTGATGGAATAAGA+TGG - chr3_2:46821856-46821875 None:intergenic 35.0%
ATGAAAAGTGGAGGATTTGA+TGG - chr3_2:46821866-46821885 None:intergenic 35.0%
TATTGGATACACCCCAAATT+GGG - chr3_2:46821893-46821912 None:intergenic 35.0%
ATAGAAGAAATGATACCTGC+GGG + chr3_2:46821945-46821964 Msa0407810:intron 35.0%
! TATTTGGGTTTACCTATAGG+TGG - chr3_2:46822130-46822149 None:intergenic 35.0%
! TCGTATTTGGGTTTACCTAT+AGG - chr3_2:46822133-46822152 None:intergenic 35.0%
TTCACAATAGTCAGTTGGTT+TGG - chr3_2:46822203-46822222 None:intergenic 35.0%
TGCTTTCGAAGATCTAATGT+TGG + chr3_2:46822266-46822285 Msa0407810:intron 35.0%
! TGTCATCCACTGTTTTATCT+TGG + chr3_2:46822316-46822335 Msa0407810:intron 35.0%
!!! TTTTGGTATAGGAAGGTGTT+AGG + chr3_2:46822455-46822474 Msa0407810:intron 35.0%
AAAGTAAAGACGGTTCCTAT+AGG - chr3_2:46822502-46822521 None:intergenic 35.0%
TTTGCTAGGTTAAGAATTGG+AGG + chr3_2:46822579-46822598 Msa0407810:intron 35.0%
TTGCTAGGTTAAGAATTGGA+GGG + chr3_2:46822580-46822599 Msa0407810:intron 35.0%
! TTGCCTACATACCCTTTTAA+GGG + chr3_2:46822656-46822675 Msa0407810:intron 35.0%
TGGAGTTTGATCCCTTAAAA+GGG - chr3_2:46822670-46822689 None:intergenic 35.0%
ATGGAGTTTGATCCCTTAAA+AGG - chr3_2:46822671-46822690 None:intergenic 35.0%
! TTTTGATCCCAAGGTTTCTT+TGG + chr3_2:46822895-46822914 Msa0407810:intron 35.0%
AGACCATAGCATGTAAACTA+GGG - chr3_2:46823106-46823125 None:intergenic 35.0%
AAGACCATAGCATGTAAACT+AGG - chr3_2:46823107-46823126 None:intergenic 35.0%
! ATGAAAGGGTTAGTAGCATA+AGG + chr3_2:46823273-46823292 Msa0407810:intron 35.0%
TACTGAATGTTAACGTGTTG+TGG - chr3_2:46823601-46823620 None:intergenic 35.0%
!! GTTTTTGGATCTGGTTGTTT+GGG - chr3_2:46823958-46823977 None:intergenic 35.0%
!!! TGTTTTTGGATCTGGTTGTT+TGG - chr3_2:46823959-46823978 None:intergenic 35.0%
TGAAACAAACCAGTAGCTTA+GGG - chr3_2:46824100-46824119 None:intergenic 35.0%
ATGAAACAAACCAGTAGCTT+AGG - chr3_2:46824101-46824120 None:intergenic 35.0%
! CAAAGTCTTTTCGAAGGAAA+AGG + chr3_2:46824438-46824457 Msa0407810:intron 35.0%
AAGAAGAAGGATTGAAGAAG+AGG - chr3_2:46824662-46824681 None:intergenic 35.0%
AATCGAAGTTGAGAAGAAGA+AGG - chr3_2:46824675-46824694 None:intergenic 35.0%
GAAAGTTAGGGTTTGGATTT+GGG + chr3_2:46824841-46824860 Msa0407810:intron 35.0%
AAAGTTAGGGTTTGGATTTG+GGG + chr3_2:46824842-46824861 Msa0407810:intron 35.0%
GATTTGGGGATGAATATTCT+TGG + chr3_2:46824856-46824875 Msa0407810:intron 35.0%
ACTTGCCTTGGACTAAATTA+TGG + chr3_2:46825053-46825072 Msa0407810:intron 35.0%
TAAAGGACAAAGGGCAAAAA+TGG + chr3_2:46825187-46825206 Msa0407810:intron 35.0%
TTGAGTCAATTTAGTCCCTA+GGG - chr3_2:46825442-46825461 None:intergenic 35.0%
TTTGAGTCAATTTAGTCCCT+AGG - chr3_2:46825443-46825462 None:intergenic 35.0%
! AAGACTCAGAGACAATTTTC+AGG + chr3_2:46825525-46825544 Msa0407810:intron 35.0%
! AGACTCAGAGACAATTTTCA+GGG + chr3_2:46825526-46825545 Msa0407810:intron 35.0%
TCAAAGACACATATCAGAGA+TGG + chr3_2:46825828-46825847 Msa0407810:intron 35.0%
ACATCCACAAATTGAAGATG+CGG + chr3_2:46825896-46825915 Msa0407810:intron 35.0%
! TTTTCCGCATCTTCAATTTG+TGG - chr3_2:46825903-46825922 None:intergenic 35.0%
!!! TATAAGGTTGGTGATGGTTT+TGG - chr3_2:46825932-46825951 None:intergenic 35.0%
AGATCTCTTCTCTGGTTATA+AGG - chr3_2:46825948-46825967 None:intergenic 35.0%
ATAGTAGAAGATCTCTTCTC+TGG - chr3_2:46825956-46825975 None:intergenic 35.0%
GAAGAGATCTTCTACTATAG+TGG + chr3_2:46825958-46825977 Msa0407810:intron 35.0%
!!! TCTTATTTTTAATAGCGGCC+GGG - chr3_2:46826006-46826025 None:intergenic 35.0%
TAAAATGGATCACCTTAACG+GGG + chr3_2:46826031-46826050 Msa0407810:intron 35.0%
ATCTATTTCCTCCATAACGT+TGG + chr3_2:46826128-46826147 Msa0407810:intron 35.0%
TGTATTTACCAACGTTATGG+AGG - chr3_2:46826139-46826158 None:intergenic 35.0%
CTCAGAGGATTGAAATTACT+TGG - chr3_2:46826180-46826199 None:intergenic 35.0%
AGTAGCTAGCCAATTAGATA+AGG - chr3_2:46826353-46826372 None:intergenic 35.0%
AGGTGTAGTTGTGATCTAAA+TGG - chr3_2:46826385-46826404 None:intergenic 35.0%
AGAGTGGAAATAAGCTATCA+TGG + chr3_2:46826678-46826697 Msa0407810:CDS 35.0%
TGTCTTCCATTACTAACTGG+CGG - chr3_2:46820648-46820667 None:intergenic 40.0%
AAGAGGAACAGCATTACATG+TGG + chr3_2:46820732-46820751 Msa0407810:CDS 40.0%
GTAAGCAATGCCTACAAAGA+TGG + chr3_2:46820757-46820776 Msa0407810:CDS 40.0%
GTAGATGCAATAGAAAGGCA+TGG + chr3_2:46820793-46820812 Msa0407810:CDS 40.0%
CTATATGCTGCACTATGAAG+AGG - chr3_2:46820862-46820881 None:intergenic 40.0%
CTTCATAGTGCAGCATATAG+AGG + chr3_2:46820862-46820881 Msa0407810:CDS 40.0%
ATGAATGGCAACGTGAAGAA+TGG - chr3_2:46821076-46821095 None:intergenic 40.0%
ATTAGCAACTTGCACTCACT+TGG - chr3_2:46821701-46821720 None:intergenic 40.0%
! ATTGATGGAATGTGATGGAG+TGG + chr3_2:46821742-46821761 Msa0407810:intron 40.0%
! TTGATGGAATGTGATGGAGT+GGG + chr3_2:46821743-46821762 Msa0407810:intron 40.0%
AAATTGGGGGGAATGAAAAG+TGG - chr3_2:46821878-46821897 None:intergenic 40.0%
! ACTTTTCATTCCCCCCAATT+TGG + chr3_2:46821877-46821896 Msa0407810:intron 40.0%
! CTTTTCATTCCCCCCAATTT+GGG + chr3_2:46821878-46821897 Msa0407810:intron 40.0%
! TTTTCATTCCCCCCAATTTG+GGG + chr3_2:46821879-46821898 Msa0407810:intron 40.0%
ATTGGATACACCCCAAATTG+GGG - chr3_2:46821892-46821911 None:intergenic 40.0%
CTATTGGATACACCCCAAAT+TGG - chr3_2:46821894-46821913 None:intergenic 40.0%
CTACTACCTTTCCTTCTTCA+AGG - chr3_2:46821973-46821992 None:intergenic 40.0%
AAGAAGGAAAGGTAGTAGAC+CGG + chr3_2:46821975-46821994 Msa0407810:intron 40.0%
GTCTGTCATATCCTTTCTTC+CGG - chr3_2:46821997-46822016 None:intergenic 40.0%
GAAAGGATATGACAGACTTC+AGG + chr3_2:46822000-46822019 Msa0407810:intron 40.0%
TTTCGATTATCGCCACCTAT+AGG + chr3_2:46822115-46822134 Msa0407810:intron 40.0%
AGGTAAACCCAAATACGAGA+AGG + chr3_2:46822135-46822154 Msa0407810:intron 40.0%
GGTAAACCCAAATACGAGAA+GGG + chr3_2:46822136-46822155 Msa0407810:intron 40.0%
TCTCTACCCTTCTCGTATTT+GGG - chr3_2:46822145-46822164 None:intergenic 40.0%
ATCTCTACCCTTCTCGTATT+TGG - chr3_2:46822146-46822165 None:intergenic 40.0%
ACGGTGCTTAGTTGTAAAAC+TGG - chr3_2:46822169-46822188 None:intergenic 40.0%
GAAAAAACCCTTGAGAATCG+AGG + chr3_2:46822420-46822439 Msa0407810:intron 40.0%
!!! GAGTTGGTTTTGGTATAGGA+AGG + chr3_2:46822448-46822467 Msa0407810:intron 40.0%
! TTTACACCTAAGGGTTTGCT+AGG + chr3_2:46822565-46822584 Msa0407810:intron 40.0%
TCTTAACCTAGCAAACCCTT+AGG - chr3_2:46822574-46822593 None:intergenic 40.0%
!! GGGTTTGCTAGGTTAAGAAT+TGG + chr3_2:46822576-46822595 Msa0407810:intron 40.0%
! CTTGCCTACATACCCTTTTA+AGG + chr3_2:46822655-46822674 Msa0407810:intron 40.0%
! GATCCCTTAAAAGGGTATGT+AGG - chr3_2:46822662-46822681 None:intergenic 40.0%
AATAAGAGAGAAAGGCCTCA+AGG + chr3_2:46822760-46822779 Msa0407810:intron 40.0%
ATAAGAGAGAAAGGCCTCAA+GGG + chr3_2:46822761-46822780 Msa0407810:intron 40.0%
!! TCAATGGGATTTTGATCCCA+AGG + chr3_2:46822886-46822905 Msa0407810:intron 40.0%
GTAAACTAGGGCCTATGTAA+CGG - chr3_2:46823094-46823113 None:intergenic 40.0%
GGACTTAGCATGTATAACCT+AGG - chr3_2:46823167-46823186 None:intergenic 40.0%
TATAGAAATGAGGGGAGATG+AGG + chr3_2:46823223-46823242 Msa0407810:intron 40.0%
!! AAAGGATTTTTAGGCATGGC+AGG + chr3_2:46823853-46823872 Msa0407810:intron 40.0%
!! AAGGATTTTTAGGCATGGCA+GGG + chr3_2:46823854-46823873 Msa0407810:intron 40.0%
TCCAGTACAAAAATAAGCCC+AGG + chr3_2:46823932-46823951 Msa0407810:intron 40.0%
ATCCACATGGATCAATCCTA+CGG - chr3_2:46824000-46824019 None:intergenic 40.0%
TGGATCTAACCTAGATCCTA+TGG + chr3_2:46824015-46824034 Msa0407810:intron 40.0%
ATCTAACCTAGATCCTATGG+TGG + chr3_2:46824018-46824037 Msa0407810:intron 40.0%
! GCTTTTATAGAGGACTGAAC+CGG - chr3_2:46824078-46824097 None:intergenic 40.0%
! GTAGCTTAGGGCTTTTATAG+AGG - chr3_2:46824088-46824107 None:intergenic 40.0%
CTATAAAAGCCCTAAGCTAC+TGG + chr3_2:46824088-46824107 Msa0407810:intron 40.0%
TCACTTCTCTTTCTCTCTCT+AGG + chr3_2:46824124-46824143 Msa0407810:intron 40.0%
CGGAGAAGATGAAGATTCAT+CGG + chr3_2:46824226-46824245 Msa0407810:intron 40.0%
AACGGTGAATCAGAGTAGAT+CGG - chr3_2:46824475-46824494 None:intergenic 40.0%
! CTTCTCGTTTTCATCGCAAA+AGG - chr3_2:46824525-46824544 None:intergenic 40.0%
! CTTTTGCGATGAAAACGAGA+AGG + chr3_2:46824523-46824542 Msa0407810:intron 40.0%
! TGAAAACGAGAAGGTTTTCG+TGG + chr3_2:46824532-46824551 Msa0407810:intron 40.0%
TCGAATCTCCATTTCAACTC+AGG - chr3_2:46824561-46824580 None:intergenic 40.0%
GTAGAAGTTTCGAATCCTTC+TGG + chr3_2:46824605-46824624 Msa0407810:intron 40.0%
AAGTTTCGAATCCTTCTGGT+AGG + chr3_2:46824609-46824628 Msa0407810:intron 40.0%
TGCTTGAATTGCAGAACAAC+CGG + chr3_2:46824739-46824758 Msa0407810:intron 40.0%
!! TGTTCTGGAAAGTTAGGGTT+TGG + chr3_2:46824834-46824853 Msa0407810:intron 40.0%
GGAAAGTTAGGGTTTGGATT+TGG + chr3_2:46824840-46824859 Msa0407810:intron 40.0%
TGGTGTTCTTGAAAACGGTT+AGG + chr3_2:46824876-46824895 Msa0407810:intron 40.0%
! TTGATTCTGGAGAGAGAATG+TGG + chr3_2:46824909-46824928 Msa0407810:intron 40.0%
! TGGAATGGTGTTTGTTGAGT+TGG + chr3_2:46824929-46824948 Msa0407810:intron 40.0%
!! AATGGTGTTTGTTGAGTTGG+CGG + chr3_2:46824932-46824951 Msa0407810:intron 40.0%
ACACATGGCAGCCTATATAA+AGG - chr3_2:46824997-46825016 None:intergenic 40.0%
AAGGGCAAAAATGGACAAAG+AGG + chr3_2:46825196-46825215 Msa0407810:intron 40.0%
AAATGACCAAAATGCCCCTA+GGG + chr3_2:46825424-46825443 Msa0407810:intron 40.0%
TGAGTCAATTTAGTCCCTAG+GGG - chr3_2:46825441-46825460 None:intergenic 40.0%
! AGGTGCAAGAAAACCCTTTT+TGG + chr3_2:46825671-46825690 Msa0407810:intron 40.0%
! GCAAGAAAACCCTTTTTGGA+TGG + chr3_2:46825675-46825694 Msa0407810:intron 40.0%
!! TCTGGTTATAAGGTTGGTGA+TGG - chr3_2:46825938-46825957 None:intergenic 40.0%
CTCTTCTCTGGTTATAAGGT+TGG - chr3_2:46825944-46825963 None:intergenic 40.0%
CATCATAACATTAAGACCCC+CGG + chr3_2:46825985-46826004 Msa0407810:intron 40.0%
!!! TTATTTTTAATAGCGGCCGG+GGG - chr3_2:46826004-46826023 None:intergenic 40.0%
!!! CTTATTTTTAATAGCGGCCG+GGG - chr3_2:46826005-46826024 None:intergenic 40.0%
!! CGAGAAAGTTTTTGACTCAG+AGG - chr3_2:46826195-46826214 None:intergenic 40.0%
TTAGATAAGGACAGAGGAGA+GGG - chr3_2:46826340-46826359 None:intergenic 40.0%
ATTAGATAAGGACAGAGGAG+AGG - chr3_2:46826341-46826360 None:intergenic 40.0%
CTCCTCTGTCCTTATCTAAT+TGG + chr3_2:46826341-46826360 Msa0407810:intron 40.0%
AGCCAATTAGATAAGGACAG+AGG - chr3_2:46826346-46826365 None:intergenic 40.0%
! GTATCCGATTTTTCGCTCTA+TGG + chr3_2:46826598-46826617 Msa0407810:CDS 40.0%
TCCTCCATAGAGCGAAAAAT+CGG - chr3_2:46826605-46826624 None:intergenic 40.0%
CTAGTAGCAAGAAGTTCAAG+AGG - chr3_2:46826644-46826663 None:intergenic 40.0%
CTCTTGAACTTCTTGCTACT+AGG + chr3_2:46826642-46826661 Msa0407810:CDS 40.0%
AGGAAATCAGCTTTCAAGAG+TGG + chr3_2:46826662-46826681 Msa0407810:CDS 40.0%
GTGGAAATAAGCTATCATGG+TGG + chr3_2:46826681-46826700 Msa0407810:CDS 40.0%
GATCAATGAGAGATGGGTAG+TGG - chr3_2:46820320-46820339 None:intergenic 45.0%
CATTACTAACTGGCGGAACA+CGG - chr3_2:46820641-46820660 None:intergenic 45.0%
! GAAAGGCATGGTGATCTAAG+TGG + chr3_2:46820805-46820824 Msa0407810:CDS 45.0%
! AGGGAGAAACACCACTCTTT+TGG + chr3_2:46820959-46820978 Msa0407810:CDS 45.0%
! GGGAGAAACACCACTCTTTT+GGG + chr3_2:46820960-46820979 Msa0407810:CDS 45.0%
TTGGATACACCCCAAATTGG+GGG - chr3_2:46821891-46821910 None:intergenic 45.0%
AAGGTAGTAGACCGGAAGAA+AGG + chr3_2:46821983-46822002 Msa0407810:intron 45.0%
! TGGTTTGGCAGAAGCTTCAA+CGG - chr3_2:46822188-46822207 None:intergenic 45.0%
GTGGATGACACCTTGTTGAT+TGG - chr3_2:46822306-46822325 None:intergenic 45.0%
AACCCTTGAGAATCGAGGTT+CGG + chr3_2:46822425-46822444 Msa0407810:intron 45.0%
!!! TCGGGAGTTGGTTTTGGTAT+AGG + chr3_2:46822444-46822463 Msa0407810:intron 45.0%
GCGTGCGTAGAAAGTAAAGA+CGG - chr3_2:46822512-46822531 None:intergenic 45.0%
TTGGAGGGAGAAGAATGTGT+TGG + chr3_2:46822595-46822614 Msa0407810:intron 45.0%
TCCAAAATCCTATGCCCTTG+AGG - chr3_2:46822778-46822797 None:intergenic 45.0%
ACACATGCACACACATCACA+TGG - chr3_2:46823033-46823052 None:intergenic 45.0%
TGTGATGTGTGTGCATGTGT+CGG + chr3_2:46823033-46823052 Msa0407810:intron 45.0%
GAGTCCATTGTCCGTTACAT+AGG + chr3_2:46823080-46823099 Msa0407810:intron 45.0%
AGGCCCTAGTTTACATGCTA+TGG + chr3_2:46823100-46823119 Msa0407810:intron 45.0%
!! AGGATTTTTAGGCATGGCAG+GGG + chr3_2:46823855-46823874 Msa0407810:intron 45.0%
!!! GCCTGGGCTTATTTTTGTAC+TGG - chr3_2:46823936-46823955 None:intergenic 45.0%
ACCAGATCCAAAAACACCTC+AGG + chr3_2:46823963-46823982 Msa0407810:intron 45.0%
!!! TCCTGAGGTGTTTTTGGATC+TGG - chr3_2:46823967-46823986 None:intergenic 45.0%
!! TGAAGCTCCTGAGGTGTTTT+TGG - chr3_2:46823973-46823992 None:intergenic 45.0%
AAAAACACCTCAGGAGCTTC+AGG + chr3_2:46823972-46823991 Msa0407810:intron 45.0%
AAAACACCTCAGGAGCTTCA+GGG + chr3_2:46823973-46823992 Msa0407810:intron 45.0%
GGATCTAGGTTAGATCCACA+TGG - chr3_2:46824013-46824032 None:intergenic 45.0%
GAACGGAGAAGAAGAGAGAA+GGG - chr3_2:46824174-46824193 None:intergenic 45.0%
TGAACGGAGAAGAAGAGAGA+AGG - chr3_2:46824175-46824194 None:intergenic 45.0%
!! TGCCGGTTTCTGGAATGAAA+CGG + chr3_2:46824202-46824221 Msa0407810:intron 45.0%
GACCGTTTCATTCCAGAAAC+CGG - chr3_2:46824207-46824226 None:intergenic 45.0%
!! GGTTTCTGGAATGAAACGGT+CGG + chr3_2:46824206-46824225 Msa0407810:intron 45.0%
GTCTTGAACTCCGATCTACA+TGG + chr3_2:46824289-46824308 Msa0407810:intron 45.0%
! CGTGGTTACCTGAGTTGAAA+TGG + chr3_2:46824550-46824569 Msa0407810:intron 45.0%
TATGAATTCGTCGCTCACAG+TGG + chr3_2:46824708-46824727 Msa0407810:intron 45.0%
TCTGGAGAGAGAATGTGGAA+TGG + chr3_2:46824914-46824933 Msa0407810:intron 45.0%
!! TTGAGTTGGCGGTTAGAGAA+TGG + chr3_2:46824943-46824962 Msa0407810:intron 45.0%
CATTGGGTCTCAAGTACACA+TGG - chr3_2:46825012-46825031 None:intergenic 45.0%
GAAATGACCAAAATGCCCCT+AGG + chr3_2:46825423-46825442 Msa0407810:intron 45.0%
!!! TTTAGTCCCTAGGGGCATTT+TGG - chr3_2:46825433-46825452 None:intergenic 45.0%
CAGAATTCTCCTTCCAACGA+GGG - chr3_2:46826057-46826076 None:intergenic 45.0%
TGGAAGGAGAATTCTGCTGT+TGG + chr3_2:46826061-46826080 Msa0407810:intron 45.0%
GGAAGGAGAATTCTGCTGTT+GGG + chr3_2:46826062-46826081 Msa0407810:intron 45.0%
TTTGCCATACCTGTTGCACA+TGG - chr3_2:46826563-46826582 None:intergenic 45.0%
! TCCGATTTTTCGCTCTATGG+AGG + chr3_2:46826601-46826620 Msa0407810:CDS 45.0%
!! TAAAAATAAAAAAATTAGTA+AGG - chr3_2:46821431-46821450 None:intergenic 5.0%
!!! ATAATAAAATTTGTTAAAAT+TGG + chr3_2:46825286-46825305 Msa0407810:intron 5.0%
CGTGTTCCGCCAGTTAGTAA+TGG + chr3_2:46820639-46820658 Msa0407810:CDS 50.0%
! TGGAATGTGATGGAGTGGGA+TGG + chr3_2:46821747-46821766 Msa0407810:intron 50.0%
TTGGGGGGAATGAAAAGTGG+AGG - chr3_2:46821875-46821894 None:intergenic 50.0%
TGGATACACCCCAAATTGGG+GGG - chr3_2:46821890-46821909 None:intergenic 50.0%
CGGGAACCTTGAAGAAGGAA+AGG + chr3_2:46821964-46821983 Msa0407810:intron 50.0%
! GTTTTTCTATGGGGGTCGCT+TGG - chr3_2:46822030-46822049 None:intergenic 50.0%
ACCCTTGAGAATCGAGGTTC+GGG + chr3_2:46822426-46822445 Msa0407810:intron 50.0%
TCCCGAACCTCGATTCTCAA+GGG - chr3_2:46822430-46822449 None:intergenic 50.0%
!! GCCTCAAGGGCATAGGATTT+TGG + chr3_2:46822774-46822793 Msa0407810:intron 50.0%
!! AGGGCCTATGTAACGGACAA+TGG - chr3_2:46823087-46823106 None:intergenic 50.0%
GACCGTAGGATTGATCCATG+TGG + chr3_2:46823995-46824014 Msa0407810:intron 50.0%
CACTCTCCACCATAGGATCT+AGG - chr3_2:46824027-46824046 None:intergenic 50.0%
! ATCCTATGGTGGAGAGTGCA+GGG + chr3_2:46824029-46824048 Msa0407810:intron 50.0%
TATAGAGGACTGAACCGGAC+CGG - chr3_2:46824073-46824092 None:intergenic 50.0%
AAACCGGCAGAGAAGGTGAA+CGG - chr3_2:46824191-46824210 None:intergenic 50.0%
ATTCCAGAAACCGGCAGAGA+AGG - chr3_2:46824198-46824217 None:intergenic 50.0%
! TCGCCGGAATCTGGAATTCA+CGG - chr3_2:46824269-46824288 None:intergenic 50.0%
CATCGCAAAAGGCTCAACGA+AGG - chr3_2:46824514-46824533 None:intergenic 50.0%
TCGGTTCAACACCTACCAGA+AGG - chr3_2:46824623-46824642 None:intergenic 50.0%
GGCGGTTAGAGAATGGTGAT+TGG + chr3_2:46824950-46824969 Msa0407810:intron 50.0%
ACACGTGGTAGGCACTCATT+GGG - chr3_2:46825028-46825047 None:intergenic 50.0%
AACACGTGGTAGGCACTCAT+TGG - chr3_2:46825029-46825048 None:intergenic 50.0%
GCAGAATTCTCCTTCCAACG+AGG - chr3_2:46826058-46826077 None:intergenic 50.0%
ATCTACGTGCCATGTGCAAC+AGG + chr3_2:46826551-46826570 Msa0407810:intron 50.0%
CGCTCTATGGAGGACAAACA+TGG + chr3_2:46826611-46826630 Msa0407810:CDS 50.0%
GCAAGCACAGCCCAAAAGAG+TGG - chr3_2:46820973-46820992 None:intergenic 55.0%
ACCTGCGGGAACCTTGAAGA+AGG + chr3_2:46821959-46821978 Msa0407810:intron 55.0%
TCCTTCTTCAAGGTTCCCGC+AGG - chr3_2:46821963-46821982 None:intergenic 55.0%
CTCCCGAACCTCGATTCTCA+AGG - chr3_2:46822431-46822450 None:intergenic 55.0%
GAGAATCGAGGTTCGGGAGT+TGG + chr3_2:46822432-46822451 Msa0407810:intron 55.0%
!! CGAGGTTCGGGAGTTGGTTT+TGG + chr3_2:46822438-46822457 Msa0407810:intron 55.0%
! GAGAAAGGCCTCAAGGGCAT+AGG + chr3_2:46822767-46822786 Msa0407810:intron 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG + chr3_2:46823045-46823064 Msa0407810:intron 55.0%
GGATCTGGTTGTTTGGGCCT+GGG - chr3_2:46823952-46823971 None:intergenic 55.0%
TGGATCTGGTTGTTTGGGCC+TGG - chr3_2:46823953-46823972 None:intergenic 55.0%
! GATCCTATGGTGGAGAGTGC+AGG + chr3_2:46824028-46824047 Msa0407810:intron 55.0%
! TCCTATGGTGGAGAGTGCAG+GGG + chr3_2:46824030-46824049 Msa0407810:intron 55.0%
!!! GGAGTGGACCGGTTTTGAAC+CGG + chr3_2:46824051-46824070 Msa0407810:intron 55.0%
! GAACCGGACCGGTTCAAAAC+CGG - chr3_2:46824062-46824081 None:intergenic 55.0%
TCTCCGTTCACCTTCTCTGC+CGG + chr3_2:46824185-46824204 Msa0407810:intron 55.0%
!! TCACCTTCTCTGCCGGTTTC+TGG + chr3_2:46824192-46824211 Msa0407810:intron 55.0%
! CCGGAATCTGGAATTCACGG+CGG - chr3_2:46824266-46824285 None:intergenic 55.0%
CCGCCGTGAATTCCAGATTC+CGG + chr3_2:46824263-46824282 Msa0407810:intron 55.0%
GTTCAAGACTCGCCGGAATC+TGG - chr3_2:46824278-46824297 None:intergenic 55.0%
GATCGGAGTTCAAGACTCGC+CGG - chr3_2:46824285-46824304 None:intergenic 55.0%
TGAGTGCCTACCACGTGTTC+TGG + chr3_2:46825030-46825049 Msa0407810:intron 55.0%
GCAAGTCCAGAACACGTGGT+AGG - chr3_2:46825039-46825058 None:intergenic 55.0%
CAAGGCAAGTCCAGAACACG+TGG - chr3_2:46825043-46825062 None:intergenic 55.0%
! CACGTGTTCTGGACTTGCCT+TGG + chr3_2:46825041-46825060 Msa0407810:intron 55.0%
CGTGCCATGTGCAACAGGTA+TGG + chr3_2:46826556-46826575 Msa0407810:intron 55.0%
TACGGTCCCTGAAGCTCCTG+AGG - chr3_2:46823982-46824001 None:intergenic 60.0%
TCAGGAGCTTCAGGGACCGT+AGG + chr3_2:46823981-46824000 Msa0407810:intron 60.0%
TCCCCTGCACTCTCCACCAT+AGG - chr3_2:46824034-46824053 None:intergenic 60.0%
!!! GGACCGGTTTTGAACCGGTC+CGG + chr3_2:46824056-46824075 Msa0407810:intron 60.0%
TTCCAACGAGGGCCCCGTTA+AGG - chr3_2:46826046-46826065 None:intergenic 60.0%
TTAACGGGGCCCTCGTTGGA+AGG + chr3_2:46826045-46826064 Msa0407810:intron 60.0%
! TGGTGGAGAGTGCAGGGGAG+TGG + chr3_2:46824035-46824054 Msa0407810:intron 65.0%
! GAGAGTGCAGGGGAGTGGAC+CGG + chr3_2:46824040-46824059 Msa0407810:intron 65.0%
CACCTTAACGGGGCCCTCGT+TGG + chr3_2:46826041-46826060 Msa0407810:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 46820317 46826980 46820317 ID=Msa0407810;Name=Msa0407810
chr3_2 mRNA 46820317 46826980 46820317 ID=Msa0407810-mRNA-1;Parent=Msa0407810;Name=Msa0407810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=63|1|1|1|0.5|0.33|3|250|250
chr3_2 exon 46820317 46820500 46820317 ID=Msa0407810-mRNA-1:exon:9019;Parent=Msa0407810-mRNA-1
chr3_2 exon 46820635 46821108 46820635 ID=Msa0407810-mRNA-1:exon:9020;Parent=Msa0407810-mRNA-1
chr3_2 exon 46826573 46826980 46826573 ID=Msa0407810-mRNA-1:exon:9021;Parent=Msa0407810-mRNA-1
chr3_2 five_prime_UTR 46820317 46820379 46820317 ID=Msa0407810-mRNA-1:five_prime_utr;Parent=Msa0407810-mRNA-1
chr3_2 CDS 46820380 46820500 46820380 ID=Msa0407810-mRNA-1:cds;Parent=Msa0407810-mRNA-1
chr3_2 CDS 46820635 46821108 46820635 ID=Msa0407810-mRNA-1:cds;Parent=Msa0407810-mRNA-1
chr3_2 CDS 46826573 46826730 46826573 ID=Msa0407810-mRNA-1:cds;Parent=Msa0407810-mRNA-1
chr3_2 three_prime_UTR 46826731 46826980 46826731 ID=Msa0407810-mRNA-1:three_prime_utr;Parent=Msa0407810-mRNA-1
Gene Sequence

>Msa0407810

ATGGATCCTAATTCTATGATTCAGCCTCAAGATGAAGATGAAATGAATCCTAATTCTATGATTCAGTCTCAAGATGATTCCGAAGATGAAGATGAAGATGAAGATTATGACTCTCAAGATGCTGCCGTGTTCCGCCAGTTAGTAATGGAAGACAAATGGGAAGAAGTAATCAAAAAATATGAAGAACATGTATTTTTTCACAAGATAAAAATAAAGGGAAGAGGAACAGCATTACATGTGGCAGTAAGCAATGCCTACAAAGATGGTGTAAAACGACTTGTAGATGCAATAGAAAGGCATGGTGATCTAAGTGGTTTAGAATTGTCAAATGAAAGAGATGCTACTCCTCTTCATAGTGCAGCATATAGAGGATTCACAAGTATATGTGAATGTATCATTGGAGAAGATGGTAAAAGGAAGCATTTGATTAGAGTAAAAAATGCAAAGGGAGAAACACCACTCTTTTGGGCTGTGCTTGCACGCCATAAAAAGACCTTTCTTTACCTACATCAGTTTTTCCCATATGATATCAATCTTGCTATCAATAACAATGGCACTACCATTCTTCACGTTGCCATTCATAGAGAAATATTCGGTATGGCAAATATAATAATGCATTTGTATCCGATTTTTCGCTCTATGGAGGACAAACATGGCGAGTCTCCTCTTGAACTTCTTGCTACTAGGAAATCAGCTTTCAAGAGTGGAAATAAGCTATCATGGTGGAAGAAAATTTTGTACAACTGTAAGTGA

Protein sequence

>Msa0407810

MDPNSMIQPQDEDEMNPNSMIQSQDDSEDEDEDEDYDSQDAAVFRQLVMEDKWEEVIKKYEEHVFFHKIKIKGRGTALHVAVSNAYKDGVKRLVDAIERHGDLSGLELSNERDATPLHSAAYRGFTSICECIIGEDGKRKHLIRVKNAKGETPLFWAVLARHKKTFLYLHQFFPYDINLAINNNGTTILHVAIHREIFGMANIIMHLYPIFRSMEDKHGESPLELLATRKSAFKSGNKLSWWKKILYNCK*