AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0499480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0499480 MtrunA17_Chr3g0098291 69.167 240 64 6 46 279 1 236 3.05e-107 310
Msa0499480 MtrunA17_Chr3g0098521 75.817 153 35 1 80 230 1 153 9.49e-81 240
Msa0499480 MtrunA17_Chr3g0098491 74.834 151 36 1 80 228 1 151 7.53e-78 233
Msa0499480 MtrunA17_Chr3g0102001 48.858 219 97 5 74 278 21 238 3.55e-54 187
Msa0499480 MtrunA17_Chr3g0098541 51.337 187 80 3 103 278 5 191 1.03e-52 175
Msa0499480 MtrunA17_Chr5g0439061 43.396 212 104 6 81 278 29 238 3.92e-40 147
Msa0499480 MtrunA17_Chr5g0439071 39.904 208 116 4 77 276 25 231 1.75e-38 142
Msa0499480 MtrunA17_Chr5g0439021 40.506 158 88 3 77 228 25 182 2.97e-29 109
Msa0499480 MtrunA17_Chr2g0286601 34.314 204 126 4 80 278 14 214 3.65e-25 104
Msa0499480 MtrunA17_Chr2g0286571 35.122 205 123 5 80 278 14 214 4.92e-25 101
Msa0499480 MtrunA17_Chr2g0286551 33.824 204 127 4 80 278 14 214 1.09e-22 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 40 sgRNAs with CRISPR-Local

Find 451 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGGAGAAACACCACTCTTT+TGG 0.238209 3_4:+38330786 Msa0499480:CDS
TGAGACTGAATCATAGAATT+AGG 0.239693 3_4:-38330164 None:intergenic
TGAGGCTGAATCATAGAATT+AGG 0.314261 3_4:-38330122 None:intergenic
TTAGAAAGAAAATAAGAAAA+AGG 0.335365 3_4:-38330077 None:intergenic
TCATTGGAGAAGATGGTAAA+AGG 0.344288 3_4:+38330735 Msa0499480:CDS
TAAGTGTCAAACTTCTGAAA+TGG 0.365860 3_4:+38330097 Msa0499480:CDS
TTCATCTTCATCTTCATCTT+CGG 0.366491 3_4:-38330195 None:intergenic
ATTTGTCTTCCATTACTAAC+TGG 0.368328 3_4:-38330475 None:intergenic
GCCATTCATAGAGAAATATT+CGG 0.388945 3_4:+38330914 Msa0499480:CDS
ATAGCAAGATTGATATCATA+TGG 0.409074 3_4:-38330860 None:intergenic
CTCTTGAACTTCTTGCTACT+AGG 0.427415 3_4:+38336468 Msa0499480:CDS
GTTAGTAATGGAAGACAAAT+GGG 0.435267 3_4:+38330478 Msa0499480:CDS
AGTTAGTAATGGAAGACAAA+TGG 0.436776 3_4:+38330477 Msa0499480:CDS
AGTATATGTGAATGTATCAT+TGG 0.446416 3_4:+38330719 Msa0499480:CDS
ACCGAATATTTCTCTATGAA+TGG 0.459441 3_4:-38330915 None:intergenic
TTCATTTCATCTTCATCTTG+AGG 0.482522 3_4:-38330140 None:intergenic
CTTCATAGTGCAGCATATAG+AGG 0.496464 3_4:+38330689 Msa0499480:intron
CGCTCTATGGAGGACAAACA+TGG 0.524121 3_4:+38336437 Msa0499480:CDS
ATGAATGGCAACGTGAAGAA+TGG 0.528135 3_4:-38330900 None:intergenic
CTAGTAGCAAGAAGTTCAAG+AGG 0.536869 3_4:-38336467 None:intergenic
AGATGGGTAGTGGTGATGTA+AGG 0.539214 3_4:-38330045 None:intergenic
AAACTGATGTAGGTAAAGAA+AGG 0.539480 3_4:-38330834 None:intergenic
CGTGTTCCGCCAGTTAGTAA+TGG 0.552591 3_4:+38330466 Msa0499480:CDS
GTAAGCAATGCCTACAAAGA+TGG 0.555466 3_4:+38330584 Msa0499480:CDS
AGGAAATCAGCTTTCAAGAG+TGG 0.555521 3_4:+38336488 Msa0499480:CDS
GATCAATGAGAGATGGGTAG+TGG 0.563626 3_4:-38330055 None:intergenic
TAGCAAGATTGATATCATAT+GGG 0.563968 3_4:-38330859 None:intergenic
CTATATGCTGCACTATGAAG+AGG 0.567355 3_4:-38330686 None:intergenic
CATTACTAACTGGCGGAACA+CGG 0.570660 3_4:-38330465 None:intergenic
GAAGATTATGACTCTCAAGA+TGG 0.573204 3_4:+38330215 Msa0499480:CDS
GACTTGTAGATGCAATAGAA+AGG 0.582410 3_4:+38330615 Msa0499480:CDS
GAATGTATCATTGGAGAAGA+TGG 0.599648 3_4:+38330728 Msa0499480:CDS
GAAAGGCATGGTGATCTAAG+TGG 0.601066 3_4:+38330632 Msa0499480:CDS
GCAAGCACAGCCCAAAAGAG+TGG 0.605571 3_4:-38330797 None:intergenic
AATCTTGCTATCAATAACAA+TGG 0.617874 3_4:+38330872 Msa0499480:CDS
TGTCTTCCATTACTAACTGG+CGG 0.631097 3_4:-38330472 None:intergenic
GTAGATGCAATAGAAAGGCA+TGG 0.659549 3_4:+38330620 Msa0499480:CDS
AGAGTGGAAATAAGCTATCG+TGG 0.668182 3_4:+38336504 Msa0499480:CDS
AAGAGGAACAGCATTACATG+TGG 0.700334 3_4:+38330559 Msa0499480:CDS
GTGGAAATAAGCTATCGTGG+TGG 0.715072 3_4:+38336507 Msa0499480:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTAGGTTT+AGG - chr3_4:38331132-38331151 None:intergenic 10.0%
!!! TAGGTTTTTTTTTTTTTTTT+AGG - chr3_4:38331138-38331157 None:intergenic 10.0%
!! TTAATTATTTAAAGAAAAGT+GGG + chr3_4:38331399-38331418 Msa0499480:intron 10.0%
!! ATTATAAAATTTCATTCTAT+TGG - chr3_4:38331736-38331755 None:intergenic 10.0%
!!! ATAATCGAAAATTAAATTTT+TGG - chr3_4:38331931-38331950 None:intergenic 10.0%
!! TCATTTATTAAGAAAATAAA+AGG + chr3_4:38332683-38332702 Msa0499480:intron 10.0%
!! CATTTATTAAGAAAATAAAA+GGG + chr3_4:38332684-38332703 Msa0499480:intron 10.0%
!!! TTGATATTATGATAAATTTT+AGG - chr3_4:38333226-38333245 None:intergenic 10.0%
!!! AATTTTTGTAGATTTTTAAA+AGG + chr3_4:38333661-38333680 Msa0499480:intron 10.0%
!! TTAGAAAGAAAATAAGAAAA+AGG - chr3_4:38330080-38330099 None:intergenic 15.0%
!! TTAATTAATCACAAAAATGT+TGG - chr3_4:38330296-38330315 None:intergenic 15.0%
!! TTAATGTCACATTAAAAAAT+TGG - chr3_4:38330397-38330416 None:intergenic 15.0%
!!! TTTTCACAAGATAAAAATAA+AGG + chr3_4:38330535-38330554 Msa0499480:CDS 15.0%
!! TTTCACAAGATAAAAATAAA+GGG + chr3_4:38330536-38330555 Msa0499480:CDS 15.0%
!! AAGCAGTTTAAATATAATAA+TGG + chr3_4:38331055-38331074 Msa0499480:intron 15.0%
!!! ACTTAATCCATAATAATTTT+AGG - chr3_4:38331167-38331186 None:intergenic 15.0%
!! AATAAAAAAATTAGTAAGGA+AGG - chr3_4:38331253-38331272 None:intergenic 15.0%
!! CTTAATTATTTAAAGAAAAG+TGG + chr3_4:38331398-38331417 Msa0499480:intron 15.0%
!!! AATTTTTGTTTTATTGAACT+TGG + chr3_4:38332444-38332463 Msa0499480:intron 15.0%
!!! ACAAAAACAAAAACTTTTTT+TGG - chr3_4:38332531-38332550 None:intergenic 15.0%
!!! AAAAAAGTTTTTGTTTTTGT+TGG + chr3_4:38332531-38332550 Msa0499480:intron 15.0%
!!! GTTGATTTTAATTTTGAAAA+TGG + chr3_4:38332553-38332572 Msa0499480:intron 15.0%
!! TAACAAAATTCTTAACATAA+AGG + chr3_4:38333188-38333207 Msa0499480:intron 15.0%
!!! AGATTTTTAAAAGGATTTTT+AGG + chr3_4:38333670-38333689 Msa0499480:intron 15.0%
!!! AGTTGTTAAAATTTACATTT+TGG - chr3_4:38335049-38335068 None:intergenic 15.0%
!!! AAATGTAAATTTTAACAACT+TGG + chr3_4:38335049-38335068 Msa0499480:intron 15.0%
!! AAATGAAAATAACAGAAAAT+AGG + chr3_4:38335079-38335098 Msa0499480:intron 15.0%
!! AATGAAAATAACAGAAAATA+GGG + chr3_4:38335080-38335099 Msa0499480:intron 15.0%
!! ACAAAAATAAAATCAACAAA+AGG + chr3_4:38335161-38335180 Msa0499480:intron 15.0%
!! AAAAATAAGAAAGGTTAAAA+TGG + chr3_4:38335842-38335861 Msa0499480:intron 15.0%
!!! TATATTAATTGATAATGAGT+TGG - chr3_4:38336096-38336115 None:intergenic 15.0%
!!! AATTAATCAGCTTTTATTTA+TGG - chr3_4:38336137-38336156 None:intergenic 15.0%
!!! ACTTTGAAATTTTATTCTTA+AGG - chr3_4:38336231-38336250 None:intergenic 15.0%
!! AAACTCTCCTTATATTTATT+AGG + chr3_4:38330245-38330264 Msa0499480:intron 20.0%
!! ATTAGAGTAAAAAATGCAAA+GGG + chr3_4:38330767-38330786 Msa0499480:CDS 20.0%
!!! CTTACTTTCTTTTTATTTGT+CGG + chr3_4:38330986-38331005 Msa0499480:intron 20.0%
!!! AATTTTAAGTCAAAAACACA+AGG + chr3_4:38331078-38331097 Msa0499480:intron 20.0%
!!! TTTTTTTTTAGGTTTAGGAA+AGG - chr3_4:38331127-38331146 None:intergenic 20.0%
!!! AATCCATAATAATTTTAGGT+AGG - chr3_4:38331163-38331182 None:intergenic 20.0%
!! ATCAAAAAAAAAACTTGTGT+GGG - chr3_4:38331337-38331356 None:intergenic 20.0%
!! TATCAAAAAAAAAACTTGTG+TGG - chr3_4:38331338-38331357 None:intergenic 20.0%
!!! TTATTTAAAACTTGTAGTTG+GGG - chr3_4:38331477-38331496 None:intergenic 20.0%
!!! GTTATTTAAAACTTGTAGTT+GGG - chr3_4:38331478-38331497 None:intergenic 20.0%
!!! TGTTATTTAAAACTTGTAGT+TGG - chr3_4:38331479-38331498 None:intergenic 20.0%
!!! CTACAAGTTTTAAATAACAA+AGG + chr3_4:38331480-38331499 Msa0499480:intron 20.0%
!! TGATAAATAATTATGTTCCA+TGG + chr3_4:38331603-38331622 Msa0499480:intron 20.0%
!!! AAAAGTAGAAGTTTTTCTAT+GGG - chr3_4:38331866-38331885 None:intergenic 20.0%
!! TTAAATCTAGATTGTTAGTT+TGG - chr3_4:38331889-38331908 None:intergenic 20.0%
!! AAGAAAAAATGAGATATCAA+AGG - chr3_4:38332210-38332229 None:intergenic 20.0%
!!! TTTGATATCTCATTTTTTCT+TGG + chr3_4:38332209-38332228 Msa0499480:intron 20.0%
!!! TTGATATCTCATTTTTTCTT+GGG + chr3_4:38332210-38332229 Msa0499480:intron 20.0%
!!! TGATTAGTTATTTTGCAAAA+AGG + chr3_4:38332636-38332655 Msa0499480:intron 20.0%
!! AAATAAAAGGGAAAATTCAA+TGG + chr3_4:38332696-38332715 Msa0499480:intron 20.0%
!! AATAAAAGGGAAAATTCAAT+GGG + chr3_4:38332697-38332716 Msa0499480:intron 20.0%
!! AAATAAAGTACAAAAAACCT+AGG + chr3_4:38332973-38332992 Msa0499480:intron 20.0%
!!! CATTTATTTTTTTCTTGCAA+AGG - chr3_4:38333014-38333033 None:intergenic 20.0%
!! CTTTGCAAGAAAAAAATAAA+TGG + chr3_4:38333012-38333031 Msa0499480:intron 20.0%
!! AAAATAAAGCTATAGAAATG+AGG + chr3_4:38333039-38333058 Msa0499480:intron 20.0%
!! AAATAAAGCTATAGAAATGA+GGG + chr3_4:38333040-38333059 Msa0499480:intron 20.0%
!!! ATATCATGACAATTTTTCAA+AGG + chr3_4:38333271-38333290 Msa0499480:intron 20.0%
!!! GATACATTTTTAGATACATT+TGG + chr3_4:38333349-38333368 Msa0499480:intron 20.0%
!!! TCTGCAATTTTTGAAAATAA+AGG + chr3_4:38334996-38335015 Msa0499480:intron 20.0%
!!! TTTTTGAAAATAAAGGACAA+AGG + chr3_4:38335003-38335022 Msa0499480:intron 20.0%
!!! TTTTGAAAATAAAGGACAAA+GGG + chr3_4:38335004-38335023 Msa0499480:intron 20.0%
!!! TTTTGAAAGGTTTTTTAACA+TGG + chr3_4:38335295-38335314 Msa0499480:intron 20.0%
!! TTGCAAAAATTCATGAAAAA+GGG - chr3_4:38335415-38335434 None:intergenic 20.0%
!! TTTGCAAAAATTCATGAAAA+AGG - chr3_4:38335416-38335435 None:intergenic 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + chr3_4:38335695-38335714 Msa0499480:intron 20.0%
!!! ACCTTTCTTATTTTTAATAG+CGG - chr3_4:38335837-38335856 None:intergenic 20.0%
!! TTAATAAAGAAATTCTCCTA+TGG + chr3_4:38336287-38336306 Msa0499480:intron 20.0%
!! TTTAGATTAAACTTTACCAT+AGG - chr3_4:38336306-38336325 None:intergenic 20.0%
!!! GATATATACAGTAAGAATTT+TGG - chr3_4:38336348-38336367 None:intergenic 20.0%
! TAAGGAGCCTAATAAATATA+AGG - chr3_4:38330255-38330274 None:intergenic 25.0%
! ATGTCACATTAAAAAATTGG+AGG - chr3_4:38330394-38330413 None:intergenic 25.0%
! AAGATAAAAATAAAGGGAAG+AGG + chr3_4:38330542-38330561 Msa0499480:CDS 25.0%
! AGTATATGTGAATGTATCAT+TGG + chr3_4:38330719-38330738 Msa0499480:CDS 25.0%
! GATTAGAGTAAAAAATGCAA+AGG + chr3_4:38330766-38330785 Msa0499480:CDS 25.0%
! TAGCAAGATTGATATCATAT+GGG - chr3_4:38330862-38330881 None:intergenic 25.0%
! ATAGCAAGATTGATATCATA+TGG - chr3_4:38330863-38330882 None:intergenic 25.0%
!! AATCTTGCTATCAATAACAA+TGG + chr3_4:38330872-38330891 Msa0499480:CDS 25.0%
!!! TAATAATTTTAGGTAGGTGT+AGG - chr3_4:38331157-38331176 None:intergenic 25.0%
! ACACCTACCTAAAATTATTA+TGG + chr3_4:38331157-38331176 Msa0499480:intron 25.0%
! GTGAATGTAAATAATCAAGT+GGG - chr3_4:38331202-38331221 None:intergenic 25.0%
! AGTGAATGTAAATAATCAAG+TGG - chr3_4:38331203-38331222 None:intergenic 25.0%
!! TATTTAAAACTTGTAGTTGG+GGG - chr3_4:38331476-38331495 None:intergenic 25.0%
! AATAATTATGTTCCATGGTT+TGG + chr3_4:38331608-38331627 Msa0499480:intron 25.0%
! TTGGATTTGCAAAAACTAAA+TGG + chr3_4:38331627-38331646 Msa0499480:intron 25.0%
! TTTGCAAAAACTAAATGGAA+TGG + chr3_4:38331632-38331651 Msa0499480:intron 25.0%
! AAAAACTAAATGGAATGGAA+TGG + chr3_4:38331637-38331656 Msa0499480:intron 25.0%
!! AAAGTAGAAGTTTTTCTATG+GGG - chr3_4:38331865-38331884 None:intergenic 25.0%
!! GAAAAGTAGAAGTTTTTCTA+TGG - chr3_4:38331867-38331886 None:intergenic 25.0%
!! TAATTTTCACAATAGTCAGT+TGG - chr3_4:38332034-38332053 None:intergenic 25.0%
!!! AATTCTCTTTAAGGTGATTT+TGG - chr3_4:38332067-38332086 None:intergenic 25.0%
! AGCAGATTTAATTCTCTTTA+AGG - chr3_4:38332076-38332095 None:intergenic 25.0%
!! ACTTTTATTACCAATCAACA+AGG + chr3_4:38332119-38332138 Msa0499480:intron 25.0%
!!! ACTGTTTTATCTTGGTTTTT+CGG + chr3_4:38332150-38332169 Msa0499480:intron 25.0%
! TGAGATATCAAAGGTTAAAA+AGG - chr3_4:38332201-38332220 None:intergenic 25.0%
! AAAAACGTTATTTACACCTA+AGG + chr3_4:38332381-38332400 Msa0499480:intron 25.0%
! AAAACGTTATTTACACCTAA+GGG + chr3_4:38332382-38332401 Msa0499480:intron 25.0%
!!! TTTTGAAGAATAAGAGAGAA+AGG + chr3_4:38332578-38332597 Msa0499480:intron 25.0%
!! TAATTTTCCAAAGAAACCTT+GGG - chr3_4:38332731-38332750 None:intergenic 25.0%
!! ATAATTTTCCAAAGAAACCT+TGG - chr3_4:38332732-38332751 None:intergenic 25.0%
! GGATACTTTAGATGTATATA+GGG - chr3_4:38332838-38332857 None:intergenic 25.0%
! TGGATACTTTAGATGTATAT+AGG - chr3_4:38332839-38332858 None:intergenic 25.0%
! AATAAAGCTATAGAAATGAG+GGG + chr3_4:38333041-38333060 Msa0499480:intron 25.0%
! TGAATGAAACATGAAATGAA+AGG + chr3_4:38333084-38333103 Msa0499480:intron 25.0%
! GAATGAAACATGAAATGAAA+GGG + chr3_4:38333085-38333104 Msa0499480:intron 25.0%
! GAGTAGAAATTATAAGCAAA+AGG + chr3_4:38333129-38333148 Msa0499480:intron 25.0%
! TGAAAAATTGTCATGATATG+AGG - chr3_4:38333270-38333289 None:intergenic 25.0%
!!! TTTAAAAGGATTTTTAGGCA+TGG + chr3_4:38333675-38333694 Msa0499480:intron 25.0%
! GTGAAAAATAGAGTAGTTTA+GGG - chr3_4:38334148-38334167 None:intergenic 25.0%
! TGTGAAAAATAGAGTAGTTT+AGG - chr3_4:38334149-38334168 None:intergenic 25.0%
!!! ACTCTGATTTGGAAAATAAA+CGG + chr3_4:38334185-38334204 Msa0499480:intron 25.0%
! GGTTTGTAAATACGAATAAA+CGG - chr3_4:38334319-38334338 None:intergenic 25.0%
! TGATGATATGACCTTTATAT+AGG + chr3_4:38334809-38334828 Msa0499480:intron 25.0%
!!! CTTTTTTTCAAATTGCAGTT+TGG - chr3_4:38334942-38334961 None:intergenic 25.0%
! CAAACTGCAATTTGAAAAAA+AGG + chr3_4:38334940-38334959 Msa0499480:intron 25.0%
!!! AAGTTTCAAGTCTTTGTTTT+TGG - chr3_4:38334966-38334985 None:intergenic 25.0%
! AACAAAGACTTGAAACTTAA+AGG + chr3_4:38334968-38334987 Msa0499480:intron 25.0%
!!! TGTAAATTTTAACAACTTGG+AGG + chr3_4:38335052-38335071 Msa0499480:intron 25.0%
!! ACTCAAATGCAATTTTTGAA+AGG + chr3_4:38335282-38335301 Msa0499480:intron 25.0%
! ATTAAAATGAGTTTGAATGC+AGG + chr3_4:38335375-38335394 Msa0499480:intron 25.0%
!! CATTTAAAACCATCCAAAAA+GGG - chr3_4:38335513-38335532 None:intergenic 25.0%
! TAAAATATGCAGATAAAGCA+TGG + chr3_4:38335585-38335604 Msa0499480:intron 25.0%
! ATAAAGCATGGTAAAATATC+AGG + chr3_4:38335597-38335616 Msa0499480:intron 25.0%
! TAAAGCATGGTAAAATATCA+GGG + chr3_4:38335598-38335617 Msa0499480:intron 25.0%
!! CATTTTGAGCAAGTATTTTT+AGG + chr3_4:38335682-38335701 Msa0499480:intron 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + chr3_4:38335694-38335713 Msa0499480:intron 25.0%
! ACAACTTATGTTCTTGTTAA+CGG - chr3_4:38335917-38335936 None:intergenic 25.0%
! AAATGTATTTACCAACGTTA+TGG - chr3_4:38335968-38335987 None:intergenic 25.0%
AAAAAGGATCAATGAGAGAT+GGG - chr3_4:38330064-38330083 None:intergenic 30.0%
! TAAGTGTCAAACTTCTGAAA+TGG + chr3_4:38330097-38330116 Msa0499480:CDS 30.0%
TTCATTTCATCTTCATCTTG+AGG - chr3_4:38330143-38330162 None:intergenic 30.0%
TGAGACTGAATCATAGAATT+AGG - chr3_4:38330167-38330186 None:intergenic 30.0%
TTCATCTTCATCTTCATCTT+CGG - chr3_4:38330198-38330217 None:intergenic 30.0%
AAAGATTGAACGTCAACTTA+AGG - chr3_4:38330273-38330292 None:intergenic 30.0%
!! TTAGTCTTACTTCAATGATG+AGG + chr3_4:38330339-38330358 Msa0499480:intron 30.0%
ATTTGTCTTCCATTACTAAC+TGG - chr3_4:38330478-38330497 None:intergenic 30.0%
! AGTTAGTAATGGAAGACAAA+TGG + chr3_4:38330477-38330496 Msa0499480:CDS 30.0%
! GTTAGTAATGGAAGACAAAT+GGG + chr3_4:38330478-38330497 Msa0499480:CDS 30.0%
! GGTAAAGAAAGGTCTTTTTA+TGG - chr3_4:38330826-38330845 None:intergenic 30.0%
AAACTGATGTAGGTAAAGAA+AGG - chr3_4:38330837-38330856 None:intergenic 30.0%
GCCATTCATAGAGAAATATT+CGG + chr3_4:38330914-38330933 Msa0499480:CDS 30.0%
ACCGAATATTTCTCTATGAA+TGG - chr3_4:38330918-38330937 None:intergenic 30.0%
GTGTAAATAACTAGTAAGGT+AGG - chr3_4:38331291-38331310 None:intergenic 30.0%
GTGAGTGTAAATAACTAGTA+AGG - chr3_4:38331295-38331314 None:intergenic 30.0%
TGGGTGTAAATTAACAAAGT+GGG + chr3_4:38331418-38331437 Msa0499480:intron 30.0%
AAGTTGCTAATTTACTCCTT+AGG + chr3_4:38331536-38331555 Msa0499480:intron 30.0%
GGAATGGAATGGTATATAAT+TGG + chr3_4:38331648-38331667 Msa0499480:intron 30.0%
TTTGATGGAATAAGATGGAA+TGG - chr3_4:38331677-38331696 None:intergenic 30.0%
AATAGAAGAAATGATACCTG+CGG + chr3_4:38331770-38331789 Msa0499480:intron 30.0%
! AAGTAGAAGTTTTTCTATGG+GGG - chr3_4:38331864-38331883 None:intergenic 30.0%
GATTTAATATGATCAACCAG+AGG + chr3_4:38331902-38331921 Msa0499480:intron 30.0%
!! ATTAAATTTTTGGACACCTC+TGG - chr3_4:38331921-38331940 None:intergenic 30.0%
GAAAAACCAAGATAAAACAG+TGG - chr3_4:38332151-38332170 None:intergenic 30.0%
!! CTGTTTTATCTTGGTTTTTC+GGG + chr3_4:38332151-38332170 Msa0499480:intron 30.0%
!!! TATCTCATTTTTTCTTGGGA+AGG + chr3_4:38332214-38332233 Msa0499480:intron 30.0%
!!! ATCTCATTTTTTCTTGGGAA+GGG + chr3_4:38332215-38332234 Msa0499480:intron 30.0%
TAGGATACTATAGTTGCTAT+AGG - chr3_4:38332309-38332328 None:intergenic 30.0%
TAGCAACTATAGTATCCTAT+AGG + chr3_4:38332310-38332329 Msa0499480:intron 30.0%
!!! TTTTTTGGAAGAGAACTACA+TGG - chr3_4:38332516-38332535 None:intergenic 30.0%
!! ATAGGATTTTGGAAAATGTG+AGG + chr3_4:38332611-38332630 Msa0499480:intron 30.0%
! TATGCTTTAGATGTATGCTT+AGG - chr3_4:38332811-38332830 None:intergenic 30.0%
GTAGCAAAAACTTGACAAAA+AGG + chr3_4:38333165-38333184 Msa0499480:intron 30.0%
TGTCATGATATGAGGATTAT+AGG - chr3_4:38333262-38333281 None:intergenic 30.0%
AACAGCATGTATCAAGAATT+AGG + chr3_4:38333499-38333518 Msa0499480:intron 30.0%
!! TTCATTTTGTGATGTTTCTG+TGG - chr3_4:38333626-38333645 None:intergenic 30.0%
TACGAATATGAACTCTGATT+TGG + chr3_4:38334174-38334193 Msa0499480:intron 30.0%
!!! CTTTTTCAAAGTCTTTTCGA+AGG + chr3_4:38334258-38334277 Msa0499480:intron 30.0%
GATTCGAACAAAGAAATCTT+CGG + chr3_4:38334400-38334419 Msa0499480:intron 30.0%
GTGTTGAACCGAAAATAAAT+CGG + chr3_4:38334457-38334476 Msa0499480:intron 30.0%
!!! AGGAATCACCGATTTATTTT+CGG - chr3_4:38334468-38334487 None:intergenic 30.0%
ATGAATCATCATCATTGAAC+CGG - chr3_4:38334587-38334606 None:intergenic 30.0%
! TTTGCTTCAATTTTGTGTTC+TGG + chr3_4:38334645-38334664 Msa0499480:intron 30.0%
!!! ATTTTGTGTTCTGGAAAGTT+AGG + chr3_4:38334654-38334673 Msa0499480:intron 30.0%
!!! TTTTGTGTTCTGGAAAGTTA+GGG + chr3_4:38334655-38334674 Msa0499480:intron 30.0%
!! ATTCTTGGTGTTCTTGAAAA+CGG + chr3_4:38334697-38334716 Msa0499480:intron 30.0%
!! AGGATTTTGATCTTTGATTC+TGG + chr3_4:38334722-38334741 Msa0499480:intron 30.0%
TAAGTCCATAATTTAGTCCA+AGG - chr3_4:38334887-38334906 None:intergenic 30.0%
TTGGACTAAATTATGGACTT+AGG + chr3_4:38334886-38334905 Msa0499480:intron 30.0%
AAGTTTGTCAAATTGCAGAA+AGG - chr3_4:38334913-38334932 None:intergenic 30.0%
CTGCAATTTGACAAACTTAA+AGG + chr3_4:38334915-38334934 Msa0499480:intron 30.0%
AATGAACCAACTACAAAATG+AGG + chr3_4:38335189-38335208 Msa0499480:intron 30.0%
! TAAGTACCTCATTTTGTAGT+TGG - chr3_4:38335198-38335217 None:intergenic 30.0%
!! CATAAAATTTTGACAGAGAG+AGG - chr3_4:38335228-38335247 None:intergenic 30.0%
AGACAAATTCAAATGACTTG+AGG + chr3_4:38335477-38335496 Msa0499480:intron 30.0%
! GCATTTAAAACCATCCAAAA+AGG - chr3_4:38335514-38335533 None:intergenic 30.0%
AGGGTAAAACAATAGCAAAT+TGG + chr3_4:38335617-38335636 Msa0499480:intron 30.0%
! TGGATGTTATACCCTAATTT+TGG - chr3_4:38335709-38335728 None:intergenic 30.0%
!!! TTCTTATTTTTAATAGCGGC+CGG - chr3_4:38335833-38335852 None:intergenic 30.0%
GCCGCTATTAAAAATAAGAA+AGG + chr3_4:38335833-38335852 Msa0499480:intron 30.0%
GTTAAAATGGATCACCTTAA+CGG + chr3_4:38335855-38335874 Msa0499480:intron 30.0%
TTAAAATGGATCACCTTAAC+GGG + chr3_4:38335856-38335875 Msa0499480:intron 30.0%
! TATGGTCGTCAAATTTTTGA+CGG - chr3_4:38336119-38336138 None:intergenic 30.0%
GAAAAAGGATCAATGAGAGA+TGG - chr3_4:38330065-38330084 None:intergenic 35.0%
TGAGGCTGAATCATAGAATT+AGG - chr3_4:38330125-38330144 None:intergenic 35.0%
GAAGATTATGACTCTCAAGA+TGG + chr3_4:38330215-38330234 Msa0499480:CDS 35.0%
ACTTCAATGATGAGGCAATT+AGG + chr3_4:38330347-38330366 Msa0499480:intron 35.0%
TGGAGGAAAAATTATGCACA+TGG - chr3_4:38330377-38330396 None:intergenic 35.0%
! TCGTTTTACACCATCTTTGT+AGG - chr3_4:38330597-38330616 None:intergenic 35.0%
GACTTGTAGATGCAATAGAA+AGG + chr3_4:38330615-38330634 Msa0499480:CDS 35.0%
GAATGTATCATTGGAGAAGA+TGG + chr3_4:38330728-38330747 Msa0499480:CDS 35.0%
TCATTGGAGAAGATGGTAAA+AGG + chr3_4:38330735-38330754 Msa0499480:CDS 35.0%
CATATGGGAAAAACTGATGT+AGG - chr3_4:38330847-38330866 None:intergenic 35.0%
GTAAATAATCAAGTGGGTGT+AGG - chr3_4:38331196-38331215 None:intergenic 35.0%
GTGGGTGTAAATTAACAAAG+TGG + chr3_4:38331417-38331436 Msa0499480:intron 35.0%
CATCAATCAAACACAACCTA+AGG - chr3_4:38331555-38331574 None:intergenic 35.0%
! CTTAGGTTGTGTTTGATTGA+TGG + chr3_4:38331553-38331572 Msa0499480:intron 35.0%
GTTTGATTGATGGAATGTGA+TGG + chr3_4:38331563-38331582 Msa0499480:intron 35.0%
! GTTTTTGCAAATCCAAACCA+TGG - chr3_4:38331623-38331642 None:intergenic 35.0%
GAGGATTTGATGGAATAAGA+TGG - chr3_4:38331682-38331701 None:intergenic 35.0%
ATGAAAAGTGGAGGATTTGA+TGG - chr3_4:38331692-38331711 None:intergenic 35.0%
TATTGGATACACCCCAAATT+GGG - chr3_4:38331719-38331738 None:intergenic 35.0%
ATAGAAGAAATGATACCTGC+GGG + chr3_4:38331771-38331790 Msa0499480:intron 35.0%
! TATTTGGGTTTACCTATAGG+TGG - chr3_4:38331956-38331975 None:intergenic 35.0%
! TCGTATTTGGGTTTACCTAT+AGG - chr3_4:38331959-38331978 None:intergenic 35.0%
TTCACAATAGTCAGTTGGTT+TGG - chr3_4:38332029-38332048 None:intergenic 35.0%
TGCTTTCGAAGATCTAATGT+TGG + chr3_4:38332092-38332111 Msa0499480:intron 35.0%
! TGTCATCCACTGTTTTATCT+TGG + chr3_4:38332142-38332161 Msa0499480:intron 35.0%
!!! TTTTGGTATAGGAAGGTGTT+AGG + chr3_4:38332281-38332300 Msa0499480:intron 35.0%
AAAGTAAAGACGGTTCCTAT+AGG - chr3_4:38332328-38332347 None:intergenic 35.0%
TTTGCTAGGTTAAGAATTGG+AGG + chr3_4:38332405-38332424 Msa0499480:intron 35.0%
TTGCTAGGTTAAGAATTGGA+GGG + chr3_4:38332406-38332425 Msa0499480:intron 35.0%
! TTGCCTACATACCCTTTTAA+GGG + chr3_4:38332482-38332501 Msa0499480:intron 35.0%
TGGAGTTTGATCCCTTAAAA+GGG - chr3_4:38332496-38332515 None:intergenic 35.0%
ATGGAGTTTGATCCCTTAAA+AGG - chr3_4:38332497-38332516 None:intergenic 35.0%
! TTTTGATCCCAAGGTTTCTT+TGG + chr3_4:38332721-38332740 Msa0499480:intron 35.0%
AGACCATAGCATGTAAACTA+GGG - chr3_4:38332932-38332951 None:intergenic 35.0%
AAGACCATAGCATGTAAACT+AGG - chr3_4:38332933-38332952 None:intergenic 35.0%
! ATGAAAGGGTTAGTAGCATA+AGG + chr3_4:38333099-38333118 Msa0499480:intron 35.0%
TACTGAATGTTAACGTGTTG+TGG - chr3_4:38333427-38333446 None:intergenic 35.0%
!! GTTTTTGGATCTGGTTGTTT+GGG - chr3_4:38333784-38333803 None:intergenic 35.0%
!!! TGTTTTTGGATCTGGTTGTT+TGG - chr3_4:38333785-38333804 None:intergenic 35.0%
TGAAACAAACCAGTAGCTTA+GGG - chr3_4:38333926-38333945 None:intergenic 35.0%
ATGAAACAAACCAGTAGCTT+AGG - chr3_4:38333927-38333946 None:intergenic 35.0%
! CAAAGTCTTTTCGAAGGAAA+AGG + chr3_4:38334264-38334283 Msa0499480:intron 35.0%
AAGAAGAAGGATTGAAGAAG+AGG - chr3_4:38334488-38334507 None:intergenic 35.0%
AATCGAAGTTGAGAAGAAGA+AGG - chr3_4:38334501-38334520 None:intergenic 35.0%
GAAAGTTAGGGTTTGGATTT+GGG + chr3_4:38334667-38334686 Msa0499480:intron 35.0%
AAAGTTAGGGTTTGGATTTG+GGG + chr3_4:38334668-38334687 Msa0499480:intron 35.0%
GATTTGGGGATGAATATTCT+TGG + chr3_4:38334682-38334701 Msa0499480:intron 35.0%
ACTTGCCTTGGACTAAATTA+TGG + chr3_4:38334879-38334898 Msa0499480:intron 35.0%
TAAAGGACAAAGGGCAAAAA+TGG + chr3_4:38335013-38335032 Msa0499480:intron 35.0%
TTGAGTCAATTTAGTCCCTA+GGG - chr3_4:38335268-38335287 None:intergenic 35.0%
TTTGAGTCAATTTAGTCCCT+AGG - chr3_4:38335269-38335288 None:intergenic 35.0%
! AAGACTCAGAGACAATTTTC+AGG + chr3_4:38335351-38335370 Msa0499480:intron 35.0%
! AGACTCAGAGACAATTTTCA+GGG + chr3_4:38335352-38335371 Msa0499480:intron 35.0%
TCAAAGACACATATCAGAGA+TGG + chr3_4:38335654-38335673 Msa0499480:intron 35.0%
ACATCCACAAATTGAAGATG+CGG + chr3_4:38335722-38335741 Msa0499480:intron 35.0%
! TTTTCCGCATCTTCAATTTG+TGG - chr3_4:38335729-38335748 None:intergenic 35.0%
!!! TATAAGGTTGGTGATGGTTT+TGG - chr3_4:38335758-38335777 None:intergenic 35.0%
AGATCTCTTCTCTGGTTATA+AGG - chr3_4:38335774-38335793 None:intergenic 35.0%
ATAGTAGAAGATCTCTTCTC+TGG - chr3_4:38335782-38335801 None:intergenic 35.0%
GAAGAGATCTTCTACTATAG+TGG + chr3_4:38335784-38335803 Msa0499480:intron 35.0%
!!! TCTTATTTTTAATAGCGGCC+GGG - chr3_4:38335832-38335851 None:intergenic 35.0%
TAAAATGGATCACCTTAACG+GGG + chr3_4:38335857-38335876 Msa0499480:intron 35.0%
ATCTATTTCCTCCATAACGT+TGG + chr3_4:38335954-38335973 Msa0499480:intron 35.0%
TGTATTTACCAACGTTATGG+AGG - chr3_4:38335965-38335984 None:intergenic 35.0%
CTCAGAGGATTGAAATTACT+TGG - chr3_4:38336006-38336025 None:intergenic 35.0%
AGTAGCTAGCCAATTAGATA+AGG - chr3_4:38336179-38336198 None:intergenic 35.0%
AGGTGTAGTTGTGATCTAAA+TGG - chr3_4:38336211-38336230 None:intergenic 35.0%
TGTCTTCCATTACTAACTGG+CGG - chr3_4:38330475-38330494 None:intergenic 40.0%
AAGAGGAACAGCATTACATG+TGG + chr3_4:38330559-38330578 Msa0499480:CDS 40.0%
GTAAGCAATGCCTACAAAGA+TGG + chr3_4:38330584-38330603 Msa0499480:CDS 40.0%
GTAGATGCAATAGAAAGGCA+TGG + chr3_4:38330620-38330639 Msa0499480:CDS 40.0%
CTATATGCTGCACTATGAAG+AGG - chr3_4:38330689-38330708 None:intergenic 40.0%
CTTCATAGTGCAGCATATAG+AGG + chr3_4:38330689-38330708 Msa0499480:intron 40.0%
ATGAATGGCAACGTGAAGAA+TGG - chr3_4:38330903-38330922 None:intergenic 40.0%
ATTAGCAACTTGCACTCACT+TGG - chr3_4:38331527-38331546 None:intergenic 40.0%
! ATTGATGGAATGTGATGGAG+TGG + chr3_4:38331568-38331587 Msa0499480:intron 40.0%
! TTGATGGAATGTGATGGAGT+GGG + chr3_4:38331569-38331588 Msa0499480:intron 40.0%
AAATTGGGGGGAATGAAAAG+TGG - chr3_4:38331704-38331723 None:intergenic 40.0%
! ACTTTTCATTCCCCCCAATT+TGG + chr3_4:38331703-38331722 Msa0499480:intron 40.0%
! CTTTTCATTCCCCCCAATTT+GGG + chr3_4:38331704-38331723 Msa0499480:intron 40.0%
! TTTTCATTCCCCCCAATTTG+GGG + chr3_4:38331705-38331724 Msa0499480:intron 40.0%
ATTGGATACACCCCAAATTG+GGG - chr3_4:38331718-38331737 None:intergenic 40.0%
CTATTGGATACACCCCAAAT+TGG - chr3_4:38331720-38331739 None:intergenic 40.0%
CTACTACCTTTCCTTCTTCA+AGG - chr3_4:38331799-38331818 None:intergenic 40.0%
AAGAAGGAAAGGTAGTAGAC+CGG + chr3_4:38331801-38331820 Msa0499480:intron 40.0%
GTCTGTCATATCCTTTCTTC+CGG - chr3_4:38331823-38331842 None:intergenic 40.0%
GAAAGGATATGACAGACTTC+AGG + chr3_4:38331826-38331845 Msa0499480:intron 40.0%
TTTCGATTATCGCCACCTAT+AGG + chr3_4:38331941-38331960 Msa0499480:intron 40.0%
AGGTAAACCCAAATACGAGA+AGG + chr3_4:38331961-38331980 Msa0499480:intron 40.0%
GGTAAACCCAAATACGAGAA+GGG + chr3_4:38331962-38331981 Msa0499480:intron 40.0%
TCTCTACCCTTCTCGTATTT+GGG - chr3_4:38331971-38331990 None:intergenic 40.0%
ATCTCTACCCTTCTCGTATT+TGG - chr3_4:38331972-38331991 None:intergenic 40.0%
ACGGTGCTTAGTTGTAAAAC+TGG - chr3_4:38331995-38332014 None:intergenic 40.0%
GAAAAAACCCTTGAGAATCG+AGG + chr3_4:38332246-38332265 Msa0499480:intron 40.0%
!!! GAGTTGGTTTTGGTATAGGA+AGG + chr3_4:38332274-38332293 Msa0499480:intron 40.0%
! TTTACACCTAAGGGTTTGCT+AGG + chr3_4:38332391-38332410 Msa0499480:intron 40.0%
TCTTAACCTAGCAAACCCTT+AGG - chr3_4:38332400-38332419 None:intergenic 40.0%
!! GGGTTTGCTAGGTTAAGAAT+TGG + chr3_4:38332402-38332421 Msa0499480:intron 40.0%
! CTTGCCTACATACCCTTTTA+AGG + chr3_4:38332481-38332500 Msa0499480:intron 40.0%
! GATCCCTTAAAAGGGTATGT+AGG - chr3_4:38332488-38332507 None:intergenic 40.0%
AATAAGAGAGAAAGGCCTCA+AGG + chr3_4:38332586-38332605 Msa0499480:intron 40.0%
ATAAGAGAGAAAGGCCTCAA+GGG + chr3_4:38332587-38332606 Msa0499480:intron 40.0%
!! TCAATGGGATTTTGATCCCA+AGG + chr3_4:38332712-38332731 Msa0499480:intron 40.0%
GTAAACTAGGGCCTATGTAA+CGG - chr3_4:38332920-38332939 None:intergenic 40.0%
GGACTTAGCATGTATAACCT+AGG - chr3_4:38332993-38333012 None:intergenic 40.0%
TATAGAAATGAGGGGAGATG+AGG + chr3_4:38333049-38333068 Msa0499480:intron 40.0%
!! AAAGGATTTTTAGGCATGGC+AGG + chr3_4:38333679-38333698 Msa0499480:intron 40.0%
!! AAGGATTTTTAGGCATGGCA+GGG + chr3_4:38333680-38333699 Msa0499480:intron 40.0%
TCCAGTACAAAAATAAGCCC+AGG + chr3_4:38333758-38333777 Msa0499480:intron 40.0%
ATCCACATGGATCAATCCTA+CGG - chr3_4:38333826-38333845 None:intergenic 40.0%
TGGATCTAACCTAGATCCTA+TGG + chr3_4:38333841-38333860 Msa0499480:intron 40.0%
ATCTAACCTAGATCCTATGG+TGG + chr3_4:38333844-38333863 Msa0499480:intron 40.0%
! GCTTTTATAGAGGACTGAAC+CGG - chr3_4:38333904-38333923 None:intergenic 40.0%
! GTAGCTTAGGGCTTTTATAG+AGG - chr3_4:38333914-38333933 None:intergenic 40.0%
CTATAAAAGCCCTAAGCTAC+TGG + chr3_4:38333914-38333933 Msa0499480:intron 40.0%
TCACTTCTCTTTCTCTCTCT+AGG + chr3_4:38333950-38333969 Msa0499480:intron 40.0%
CGGAGAAGATGAAGATTCAT+CGG + chr3_4:38334052-38334071 Msa0499480:intron 40.0%
GGGTTTAGATCCATGTAGAT+CGG - chr3_4:38334128-38334147 None:intergenic 40.0%
AACGGTGAATCAGAGTAGAT+CGG - chr3_4:38334301-38334320 None:intergenic 40.0%
! CTTCTCGTTTTCATCGCAAA+AGG - chr3_4:38334351-38334370 None:intergenic 40.0%
! CTTTTGCGATGAAAACGAGA+AGG + chr3_4:38334349-38334368 Msa0499480:intron 40.0%
! TGAAAACGAGAAGGTTTTCG+TGG + chr3_4:38334358-38334377 Msa0499480:intron 40.0%
TCGAATCTCCATTTCAACTC+AGG - chr3_4:38334387-38334406 None:intergenic 40.0%
GTAGAAGTTTCGAATCCTTC+TGG + chr3_4:38334431-38334450 Msa0499480:intron 40.0%
AAGTTTCGAATCCTTCTGGT+AGG + chr3_4:38334435-38334454 Msa0499480:intron 40.0%
TGCTTGAATTGCAGAACAAC+CGG + chr3_4:38334565-38334584 Msa0499480:intron 40.0%
!! TGTTCTGGAAAGTTAGGGTT+TGG + chr3_4:38334660-38334679 Msa0499480:intron 40.0%
GGAAAGTTAGGGTTTGGATT+TGG + chr3_4:38334666-38334685 Msa0499480:intron 40.0%
TGGTGTTCTTGAAAACGGTT+AGG + chr3_4:38334702-38334721 Msa0499480:intron 40.0%
! TTGATTCTGGAGAGAGAATG+TGG + chr3_4:38334735-38334754 Msa0499480:intron 40.0%
! TGGAATGGTGTTTGTTGAGT+TGG + chr3_4:38334755-38334774 Msa0499480:intron 40.0%
!! AATGGTGTTTGTTGAGTTGG+CGG + chr3_4:38334758-38334777 Msa0499480:intron 40.0%
ACACATGGCAGCCTATATAA+AGG - chr3_4:38334823-38334842 None:intergenic 40.0%
AAGGGCAAAAATGGACAAAG+AGG + chr3_4:38335022-38335041 Msa0499480:intron 40.0%
AAATGACCAAAATGCCCCTA+GGG + chr3_4:38335250-38335269 Msa0499480:intron 40.0%
TGAGTCAATTTAGTCCCTAG+GGG - chr3_4:38335267-38335286 None:intergenic 40.0%
! AGGTGCAAGAAAACCCTTTT+TGG + chr3_4:38335497-38335516 Msa0499480:intron 40.0%
! GCAAGAAAACCCTTTTTGGA+TGG + chr3_4:38335501-38335520 Msa0499480:intron 40.0%
!! TCTGGTTATAAGGTTGGTGA+TGG - chr3_4:38335764-38335783 None:intergenic 40.0%
CTCTTCTCTGGTTATAAGGT+TGG - chr3_4:38335770-38335789 None:intergenic 40.0%
CATCATAACATTAAGACCCC+CGG + chr3_4:38335811-38335830 Msa0499480:intron 40.0%
!!! TTATTTTTAATAGCGGCCGG+GGG - chr3_4:38335830-38335849 None:intergenic 40.0%
!!! CTTATTTTTAATAGCGGCCG+GGG - chr3_4:38335831-38335850 None:intergenic 40.0%
!! CGAGAAAGTTTTTGACTCAG+AGG - chr3_4:38336021-38336040 None:intergenic 40.0%
TTAGATAAGGACAGAGGAGA+GGG - chr3_4:38336166-38336185 None:intergenic 40.0%
ATTAGATAAGGACAGAGGAG+AGG - chr3_4:38336167-38336186 None:intergenic 40.0%
CTCCTCTGTCCTTATCTAAT+TGG + chr3_4:38336167-38336186 Msa0499480:intron 40.0%
AGCCAATTAGATAAGGACAG+AGG - chr3_4:38336172-38336191 None:intergenic 40.0%
! GTATCCGATTTTTCGCTCTA+TGG + chr3_4:38336424-38336443 Msa0499480:CDS 40.0%
TCCTCCATAGAGCGAAAAAT+CGG - chr3_4:38336431-38336450 None:intergenic 40.0%
CTAGTAGCAAGAAGTTCAAG+AGG - chr3_4:38336470-38336489 None:intergenic 40.0%
CTCTTGAACTTCTTGCTACT+AGG + chr3_4:38336468-38336487 Msa0499480:CDS 40.0%
AGGAAATCAGCTTTCAAGAG+TGG + chr3_4:38336488-38336507 Msa0499480:CDS 40.0%
AGAGTGGAAATAAGCTATCG+TGG + chr3_4:38336504-38336523 Msa0499480:CDS 40.0%
! AGATGGGTAGTGGTGATGTA+AGG - chr3_4:38330048-38330067 None:intergenic 45.0%
GATCAATGAGAGATGGGTAG+TGG - chr3_4:38330058-38330077 None:intergenic 45.0%
CATTACTAACTGGCGGAACA+CGG - chr3_4:38330468-38330487 None:intergenic 45.0%
! GAAAGGCATGGTGATCTAAG+TGG + chr3_4:38330632-38330651 Msa0499480:CDS 45.0%
! AGGGAGAAACACCACTCTTT+TGG + chr3_4:38330786-38330805 Msa0499480:CDS 45.0%
! GGGAGAAACACCACTCTTTT+GGG + chr3_4:38330787-38330806 Msa0499480:CDS 45.0%
TTGGATACACCCCAAATTGG+GGG - chr3_4:38331717-38331736 None:intergenic 45.0%
AAGGTAGTAGACCGGAAGAA+AGG + chr3_4:38331809-38331828 Msa0499480:intron 45.0%
! TGGTTTGGCAGAAGCTTCAA+CGG - chr3_4:38332014-38332033 None:intergenic 45.0%
GTGGATGACACCTTGTTGAT+TGG - chr3_4:38332132-38332151 None:intergenic 45.0%
AACCCTTGAGAATCGAGGTT+CGG + chr3_4:38332251-38332270 Msa0499480:intron 45.0%
!!! TCGGGAGTTGGTTTTGGTAT+AGG + chr3_4:38332270-38332289 Msa0499480:intron 45.0%
GCGTGCGTAGAAAGTAAAGA+CGG - chr3_4:38332338-38332357 None:intergenic 45.0%
TTGGAGGGAGAAGAATGTGT+TGG + chr3_4:38332421-38332440 Msa0499480:intron 45.0%
TCCAAAATCCTATGCCCTTG+AGG - chr3_4:38332604-38332623 None:intergenic 45.0%
ACACATGCACACACATCACA+TGG - chr3_4:38332859-38332878 None:intergenic 45.0%
TGTGATGTGTGTGCATGTGT+CGG + chr3_4:38332859-38332878 Msa0499480:intron 45.0%
GAGTCCATTGTCCGTTACAT+AGG + chr3_4:38332906-38332925 Msa0499480:intron 45.0%
AGGCCCTAGTTTACATGCTA+TGG + chr3_4:38332926-38332945 Msa0499480:intron 45.0%
!! AGGATTTTTAGGCATGGCAG+GGG + chr3_4:38333681-38333700 Msa0499480:intron 45.0%
!!! GCCTGGGCTTATTTTTGTAC+TGG - chr3_4:38333762-38333781 None:intergenic 45.0%
ACCAGATCCAAAAACACCTC+AGG + chr3_4:38333789-38333808 Msa0499480:intron 45.0%
!!! TCCTGAGGTGTTTTTGGATC+TGG - chr3_4:38333793-38333812 None:intergenic 45.0%
!! TGAAGCTCCTGAGGTGTTTT+TGG - chr3_4:38333799-38333818 None:intergenic 45.0%
AAAAACACCTCAGGAGCTTC+AGG + chr3_4:38333798-38333817 Msa0499480:intron 45.0%
AAAACACCTCAGGAGCTTCA+GGG + chr3_4:38333799-38333818 Msa0499480:intron 45.0%
GGATCTAGGTTAGATCCACA+TGG - chr3_4:38333839-38333858 None:intergenic 45.0%
GAACGGAGAAGAAGAGAGAA+GGG - chr3_4:38334000-38334019 None:intergenic 45.0%
TGAACGGAGAAGAAGAGAGA+AGG - chr3_4:38334001-38334020 None:intergenic 45.0%
!! TGCCGGTTTCTGGAATGAAA+CGG + chr3_4:38334028-38334047 Msa0499480:intron 45.0%
GACCGTTTCATTCCAGAAAC+CGG - chr3_4:38334033-38334052 None:intergenic 45.0%
!! GGTTTCTGGAATGAAACGGT+CGG + chr3_4:38334032-38334051 Msa0499480:intron 45.0%
GTCTTGAACTCCGATCTACA+TGG + chr3_4:38334115-38334134 Msa0499480:intron 45.0%
! CGTGGTTACCTGAGTTGAAA+TGG + chr3_4:38334376-38334395 Msa0499480:intron 45.0%
TATGAATTCGTCGCTCACAG+TGG + chr3_4:38334534-38334553 Msa0499480:intron 45.0%
TCTGGAGAGAGAATGTGGAA+TGG + chr3_4:38334740-38334759 Msa0499480:intron 45.0%
!! TTGAGTTGGCGGTTAGAGAA+TGG + chr3_4:38334769-38334788 Msa0499480:intron 45.0%
CATTGGGTCTCAAGTACACA+TGG - chr3_4:38334838-38334857 None:intergenic 45.0%
GAAATGACCAAAATGCCCCT+AGG + chr3_4:38335249-38335268 Msa0499480:intron 45.0%
!!! TTTAGTCCCTAGGGGCATTT+TGG - chr3_4:38335259-38335278 None:intergenic 45.0%
CAGAATTCTCCTTCCAACGA+GGG - chr3_4:38335883-38335902 None:intergenic 45.0%
TGGAAGGAGAATTCTGCTGT+TGG + chr3_4:38335887-38335906 Msa0499480:intron 45.0%
GGAAGGAGAATTCTGCTGTT+GGG + chr3_4:38335888-38335907 Msa0499480:intron 45.0%
TTTGCCATACCTGTTGCACA+TGG - chr3_4:38336389-38336408 None:intergenic 45.0%
! TCCGATTTTTCGCTCTATGG+AGG + chr3_4:38336427-38336446 Msa0499480:CDS 45.0%
GTGGAAATAAGCTATCGTGG+TGG + chr3_4:38336507-38336526 Msa0499480:CDS 45.0%
!! TAAAAATAAAAAAATTAGTA+AGG - chr3_4:38331257-38331276 None:intergenic 5.0%
!!! ATAATAAAATTTGTTAAAAT+TGG + chr3_4:38335112-38335131 Msa0499480:intron 5.0%
CGTGTTCCGCCAGTTAGTAA+TGG + chr3_4:38330466-38330485 Msa0499480:CDS 50.0%
! TGGAATGTGATGGAGTGGGA+TGG + chr3_4:38331573-38331592 Msa0499480:intron 50.0%
TTGGGGGGAATGAAAAGTGG+AGG - chr3_4:38331701-38331720 None:intergenic 50.0%
TGGATACACCCCAAATTGGG+GGG - chr3_4:38331716-38331735 None:intergenic 50.0%
CGGGAACCTTGAAGAAGGAA+AGG + chr3_4:38331790-38331809 Msa0499480:intron 50.0%
! GTTTTTCTATGGGGGTCGCT+TGG - chr3_4:38331856-38331875 None:intergenic 50.0%
ACCCTTGAGAATCGAGGTTC+GGG + chr3_4:38332252-38332271 Msa0499480:intron 50.0%
TCCCGAACCTCGATTCTCAA+GGG - chr3_4:38332256-38332275 None:intergenic 50.0%
!! GCCTCAAGGGCATAGGATTT+TGG + chr3_4:38332600-38332619 Msa0499480:intron 50.0%
!! AGGGCCTATGTAACGGACAA+TGG - chr3_4:38332913-38332932 None:intergenic 50.0%
GACCGTAGGATTGATCCATG+TGG + chr3_4:38333821-38333840 Msa0499480:intron 50.0%
CACTCTCCACCATAGGATCT+AGG - chr3_4:38333853-38333872 None:intergenic 50.0%
! ATCCTATGGTGGAGAGTGCA+GGG + chr3_4:38333855-38333874 Msa0499480:intron 50.0%
TATAGAGGACTGAACCGGAC+CGG - chr3_4:38333899-38333918 None:intergenic 50.0%
! TCGCCGGAATCTGGAATTCA+CGG - chr3_4:38334095-38334114 None:intergenic 50.0%
CATCGCAAAAGGCTCAACGA+AGG - chr3_4:38334340-38334359 None:intergenic 50.0%
TCGGTTCAACACCTACCAGA+AGG - chr3_4:38334449-38334468 None:intergenic 50.0%
GGCGGTTAGAGAATGGTGAT+TGG + chr3_4:38334776-38334795 Msa0499480:intron 50.0%
ACACGTGGTAGGCACTCATT+GGG - chr3_4:38334854-38334873 None:intergenic 50.0%
AACACGTGGTAGGCACTCAT+TGG - chr3_4:38334855-38334874 None:intergenic 50.0%
GCAGAATTCTCCTTCCAACG+AGG - chr3_4:38335884-38335903 None:intergenic 50.0%
ATCTACGTGCCATGTGCAAC+AGG + chr3_4:38336377-38336396 Msa0499480:intron 50.0%
CGCTCTATGGAGGACAAACA+TGG + chr3_4:38336437-38336456 Msa0499480:CDS 50.0%
GCAAGCACAGCCCAAAAGAG+TGG - chr3_4:38330800-38330819 None:intergenic 55.0%
ACCTGCGGGAACCTTGAAGA+AGG + chr3_4:38331785-38331804 Msa0499480:intron 55.0%
TCCTTCTTCAAGGTTCCCGC+AGG - chr3_4:38331789-38331808 None:intergenic 55.0%
CTCCCGAACCTCGATTCTCA+AGG - chr3_4:38332257-38332276 None:intergenic 55.0%
GAGAATCGAGGTTCGGGAGT+TGG + chr3_4:38332258-38332277 Msa0499480:intron 55.0%
!! CGAGGTTCGGGAGTTGGTTT+TGG + chr3_4:38332264-38332283 Msa0499480:intron 55.0%
! GAGAAAGGCCTCAAGGGCAT+AGG + chr3_4:38332593-38332612 Msa0499480:intron 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG + chr3_4:38332871-38332890 Msa0499480:intron 55.0%
GGATCTGGTTGTTTGGGCCT+GGG - chr3_4:38333778-38333797 None:intergenic 55.0%
TGGATCTGGTTGTTTGGGCC+TGG - chr3_4:38333779-38333798 None:intergenic 55.0%
! GATCCTATGGTGGAGAGTGC+AGG + chr3_4:38333854-38333873 Msa0499480:intron 55.0%
! TCCTATGGTGGAGAGTGCAG+GGG + chr3_4:38333856-38333875 Msa0499480:intron 55.0%
!!! GGAGTGGACCGGTTTTGAAC+CGG + chr3_4:38333877-38333896 Msa0499480:intron 55.0%
! GAACCGGACCGGTTCAAAAC+CGG - chr3_4:38333888-38333907 None:intergenic 55.0%
! CCGGAATCTGGAATTCACGG+CGG - chr3_4:38334092-38334111 None:intergenic 55.0%
CCGCCGTGAATTCCAGATTC+CGG + chr3_4:38334089-38334108 Msa0499480:intron 55.0%
GTTCAAGACTCGCCGGAATC+TGG - chr3_4:38334104-38334123 None:intergenic 55.0%
GATCGGAGTTCAAGACTCGC+CGG - chr3_4:38334111-38334130 None:intergenic 55.0%
TGAGTGCCTACCACGTGTTC+TGG + chr3_4:38334856-38334875 Msa0499480:intron 55.0%
GCAAGTCCAGAACACGTGGT+AGG - chr3_4:38334865-38334884 None:intergenic 55.0%
CAAGGCAAGTCCAGAACACG+TGG - chr3_4:38334869-38334888 None:intergenic 55.0%
! CACGTGTTCTGGACTTGCCT+TGG + chr3_4:38334867-38334886 Msa0499480:intron 55.0%
CGTGCCATGTGCAACAGGTA+TGG + chr3_4:38336382-38336401 Msa0499480:intron 55.0%
TACGGTCCCTGAAGCTCCTG+AGG - chr3_4:38333808-38333827 None:intergenic 60.0%
TCAGGAGCTTCAGGGACCGT+AGG + chr3_4:38333807-38333826 Msa0499480:intron 60.0%
TCCCCTGCACTCTCCACCAT+AGG - chr3_4:38333860-38333879 None:intergenic 60.0%
!!! GGACCGGTTTTGAACCGGTC+CGG + chr3_4:38333882-38333901 Msa0499480:intron 60.0%
TTCCAACGAGGGCCCCGTTA+AGG - chr3_4:38335872-38335891 None:intergenic 60.0%
TTAACGGGGCCCTCGTTGGA+AGG + chr3_4:38335871-38335890 Msa0499480:intron 60.0%
! TGGTGGAGAGTGCAGGGGAG+TGG + chr3_4:38333861-38333880 Msa0499480:intron 65.0%
! GAGAGTGCAGGGGAGTGGAC+CGG + chr3_4:38333866-38333885 Msa0499480:intron 65.0%
CACCTTAACGGGGCCCTCGT+TGG + chr3_4:38335867-38335886 Msa0499480:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 38330023 38336553 38330023 ID=Msa0499480;Name=Msa0499480
chr3_4 mRNA 38330023 38336553 38330023 ID=Msa0499480-mRNA-1;Parent=Msa0499480;Name=Msa0499480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0|1|0.33|0.25|4|0|279
chr3_4 exon 38330023 38330236 38330023 ID=Msa0499480-mRNA-1:exon:7886;Parent=Msa0499480-mRNA-1
chr3_4 exon 38330462 38330695 38330462 ID=Msa0499480-mRNA-1:exon:7887;Parent=Msa0499480-mRNA-1
chr3_4 exon 38330702 38330935 38330702 ID=Msa0499480-mRNA-1:exon:7888;Parent=Msa0499480-mRNA-1
chr3_4 exon 38336399 38336553 38336399 ID=Msa0499480-mRNA-1:exon:7889;Parent=Msa0499480-mRNA-1
chr3_4 CDS 38330023 38330236 38330023 ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1
chr3_4 CDS 38330462 38330695 38330462 ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1
chr3_4 CDS 38330702 38330935 38330702 ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1
chr3_4 CDS 38336399 38336553 38336399 ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1
Gene Sequence

>Msa0499480

TTTGCACTAGATCTGCTCAGTTCCTTACATCACCACTACCCATCTCTCATTGATCCTTTTTCTTATTTTCTTTCTAAGTGTCAAACTTCTGAAATGGATCCTAATTCTATGATTCAGCCTCAAGATGAAGATGAAATGAATCCTAATTCTATGATTCAGTCTCAAGATGATTCCGAAGATGAAGATGAAGATGAAGATTATGACTCTCAAGATGCTGCCGTGTTCCGCCAGTTAGTAATGGAAGACAAATGGGAAGAAGTAATCAAAAAATATGAAGAACATGTATTTTTTCACAAGATAAAAATAAAGGGAAGAGGAACAGCATTACATGTGGCAGTAAGCAATGCCTACAAAGATGGTGTAAAACGACTTGTAGATGCAATAGAAAGGCATGGTGATCTAAGTGGTTTAGAATTGTCAAATGAAAGAGATGCTACTCCTCTTCATACATATAGAGGATTCACAAGTATATGTGAATGTATCATTGGAGAAGATGGTAAAAGGAAGCATTTGATTAGAGTAAAAAATGCAAAGGGAGAAACACCACTCTTTTGGGCTGTGCTTGCACGCCATAAAAAGACCTTTCTTTACCTACATCAGTTTTTCCCATATGATATCAATCTTGCTATCAATAACAATGGCACTACCATTCTTCACGTTGCCATTCATAGAGAAATATTCGGTATGGCAAATATAATAATGCATTTGTATCCGATTTTTCGCTCTATGGAGGACAAACATGGCGAGTCTCCTCTTGAACTTCTTGCTACTAGGAAATCAGCTTTCAAGAGTGGAAATAAGCTATCGTGGTGGAAGAAAATTTTGTACAACTGTAAG

Protein sequence

>Msa0499480

FALDLLSSLHHHYPSLIDPFSYFLSKCQTSEMDPNSMIQPQDEDEMNPNSMIQSQDDSEDEDEDEDYDSQDAAVFRQLVMEDKWEEVIKKYEEHVFFHKIKIKGRGTALHVAVSNAYKDGVKRLVDAIERHGDLSGLELSNERDATPLHTYRGFTSICECIIGEDGKRKHLIRVKNAKGETPLFWAVLARHKKTFLYLHQFFPYDINLAINNNGTTILHVAIHREIFGMANIIMHLYPIFRSMEDKHGESPLELLATRKSAFKSGNKLSWWKKILYNCK