Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0499480 | XP_024634879.1 | 72.400 | 250 | 59 | 3 | 32 | 278 | 1 | 243 | 7.69e-121 | 374 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0499480 | A0A396IRP0 | 69.167 | 240 | 64 | 6 | 46 | 279 | 1 | 236 | 1.58e-103 | 310 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0029910 | Msa0499480 | 0.815694 | 8.107144e-52 | -8.615850e-47 |
Msa0227470 | Msa0499480 | 0.800336 | 1.511886e-48 | -8.615850e-47 |
Msa0407780 | Msa0499480 | 0.838526 | 2.729408e-57 | -8.615850e-47 |
Msa0407810 | Msa0499480 | 0.896954 | 2.246344e-76 | -8.615850e-47 |
Msa0452940 | Msa0499480 | 0.905385 | 4.537254e-80 | -8.615850e-47 |
Msa0360540 | Msa0499480 | 0.937764 | 2.038148e-98 | -8.615850e-47 |
Msa0499480 | Msa0909120 | 0.806221 | 9.140033e-50 | -8.615850e-47 |
Msa0499480 | Msa1271260 | 0.801559 | 8.505527e-49 | -8.615850e-47 |
Msa0499480 | Msa1438250 | 0.826409 | 2.756939e-54 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0499480 | MtrunA17_Chr3g0098291 | 69.167 | 240 | 64 | 6 | 46 | 279 | 1 | 236 | 3.05e-107 | 310 |
Msa0499480 | MtrunA17_Chr3g0098521 | 75.817 | 153 | 35 | 1 | 80 | 230 | 1 | 153 | 9.49e-81 | 240 |
Msa0499480 | MtrunA17_Chr3g0098491 | 74.834 | 151 | 36 | 1 | 80 | 228 | 1 | 151 | 7.53e-78 | 233 |
Msa0499480 | MtrunA17_Chr3g0102001 | 48.858 | 219 | 97 | 5 | 74 | 278 | 21 | 238 | 3.55e-54 | 187 |
Msa0499480 | MtrunA17_Chr3g0098541 | 51.337 | 187 | 80 | 3 | 103 | 278 | 5 | 191 | 1.03e-52 | 175 |
Msa0499480 | MtrunA17_Chr5g0439061 | 43.396 | 212 | 104 | 6 | 81 | 278 | 29 | 238 | 3.92e-40 | 147 |
Msa0499480 | MtrunA17_Chr5g0439071 | 39.904 | 208 | 116 | 4 | 77 | 276 | 25 | 231 | 1.75e-38 | 142 |
Msa0499480 | MtrunA17_Chr5g0439021 | 40.506 | 158 | 88 | 3 | 77 | 228 | 25 | 182 | 2.97e-29 | 109 |
Msa0499480 | MtrunA17_Chr2g0286601 | 34.314 | 204 | 126 | 4 | 80 | 278 | 14 | 214 | 3.65e-25 | 104 |
Msa0499480 | MtrunA17_Chr2g0286571 | 35.122 | 205 | 123 | 5 | 80 | 278 | 14 | 214 | 4.92e-25 | 101 |
Msa0499480 | MtrunA17_Chr2g0286551 | 33.824 | 204 | 127 | 4 | 80 | 278 | 14 | 214 | 1.09e-22 | 97.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 40 sgRNAs with CRISPR-Local
Find 451 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGGAGAAACACCACTCTTT+TGG | 0.238209 | 3_4:+38330786 | Msa0499480:CDS |
TGAGACTGAATCATAGAATT+AGG | 0.239693 | 3_4:-38330164 | None:intergenic |
TGAGGCTGAATCATAGAATT+AGG | 0.314261 | 3_4:-38330122 | None:intergenic |
TTAGAAAGAAAATAAGAAAA+AGG | 0.335365 | 3_4:-38330077 | None:intergenic |
TCATTGGAGAAGATGGTAAA+AGG | 0.344288 | 3_4:+38330735 | Msa0499480:CDS |
TAAGTGTCAAACTTCTGAAA+TGG | 0.365860 | 3_4:+38330097 | Msa0499480:CDS |
TTCATCTTCATCTTCATCTT+CGG | 0.366491 | 3_4:-38330195 | None:intergenic |
ATTTGTCTTCCATTACTAAC+TGG | 0.368328 | 3_4:-38330475 | None:intergenic |
GCCATTCATAGAGAAATATT+CGG | 0.388945 | 3_4:+38330914 | Msa0499480:CDS |
ATAGCAAGATTGATATCATA+TGG | 0.409074 | 3_4:-38330860 | None:intergenic |
CTCTTGAACTTCTTGCTACT+AGG | 0.427415 | 3_4:+38336468 | Msa0499480:CDS |
GTTAGTAATGGAAGACAAAT+GGG | 0.435267 | 3_4:+38330478 | Msa0499480:CDS |
AGTTAGTAATGGAAGACAAA+TGG | 0.436776 | 3_4:+38330477 | Msa0499480:CDS |
AGTATATGTGAATGTATCAT+TGG | 0.446416 | 3_4:+38330719 | Msa0499480:CDS |
ACCGAATATTTCTCTATGAA+TGG | 0.459441 | 3_4:-38330915 | None:intergenic |
TTCATTTCATCTTCATCTTG+AGG | 0.482522 | 3_4:-38330140 | None:intergenic |
CTTCATAGTGCAGCATATAG+AGG | 0.496464 | 3_4:+38330689 | Msa0499480:intron |
CGCTCTATGGAGGACAAACA+TGG | 0.524121 | 3_4:+38336437 | Msa0499480:CDS |
ATGAATGGCAACGTGAAGAA+TGG | 0.528135 | 3_4:-38330900 | None:intergenic |
CTAGTAGCAAGAAGTTCAAG+AGG | 0.536869 | 3_4:-38336467 | None:intergenic |
AGATGGGTAGTGGTGATGTA+AGG | 0.539214 | 3_4:-38330045 | None:intergenic |
AAACTGATGTAGGTAAAGAA+AGG | 0.539480 | 3_4:-38330834 | None:intergenic |
CGTGTTCCGCCAGTTAGTAA+TGG | 0.552591 | 3_4:+38330466 | Msa0499480:CDS |
GTAAGCAATGCCTACAAAGA+TGG | 0.555466 | 3_4:+38330584 | Msa0499480:CDS |
AGGAAATCAGCTTTCAAGAG+TGG | 0.555521 | 3_4:+38336488 | Msa0499480:CDS |
GATCAATGAGAGATGGGTAG+TGG | 0.563626 | 3_4:-38330055 | None:intergenic |
TAGCAAGATTGATATCATAT+GGG | 0.563968 | 3_4:-38330859 | None:intergenic |
CTATATGCTGCACTATGAAG+AGG | 0.567355 | 3_4:-38330686 | None:intergenic |
CATTACTAACTGGCGGAACA+CGG | 0.570660 | 3_4:-38330465 | None:intergenic |
GAAGATTATGACTCTCAAGA+TGG | 0.573204 | 3_4:+38330215 | Msa0499480:CDS |
GACTTGTAGATGCAATAGAA+AGG | 0.582410 | 3_4:+38330615 | Msa0499480:CDS |
GAATGTATCATTGGAGAAGA+TGG | 0.599648 | 3_4:+38330728 | Msa0499480:CDS |
GAAAGGCATGGTGATCTAAG+TGG | 0.601066 | 3_4:+38330632 | Msa0499480:CDS |
GCAAGCACAGCCCAAAAGAG+TGG | 0.605571 | 3_4:-38330797 | None:intergenic |
AATCTTGCTATCAATAACAA+TGG | 0.617874 | 3_4:+38330872 | Msa0499480:CDS |
TGTCTTCCATTACTAACTGG+CGG | 0.631097 | 3_4:-38330472 | None:intergenic |
GTAGATGCAATAGAAAGGCA+TGG | 0.659549 | 3_4:+38330620 | Msa0499480:CDS |
AGAGTGGAAATAAGCTATCG+TGG | 0.668182 | 3_4:+38336504 | Msa0499480:CDS |
AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_4:+38330559 | Msa0499480:CDS |
GTGGAAATAAGCTATCGTGG+TGG | 0.715072 | 3_4:+38336507 | Msa0499480:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTAGGTTT+AGG | - | chr3_4:38331132-38331151 | None:intergenic | 10.0% |
!!! | TAGGTTTTTTTTTTTTTTTT+AGG | - | chr3_4:38331138-38331157 | None:intergenic | 10.0% |
!! | TTAATTATTTAAAGAAAAGT+GGG | + | chr3_4:38331399-38331418 | Msa0499480:intron | 10.0% |
!! | ATTATAAAATTTCATTCTAT+TGG | - | chr3_4:38331736-38331755 | None:intergenic | 10.0% |
!!! | ATAATCGAAAATTAAATTTT+TGG | - | chr3_4:38331931-38331950 | None:intergenic | 10.0% |
!! | TCATTTATTAAGAAAATAAA+AGG | + | chr3_4:38332683-38332702 | Msa0499480:intron | 10.0% |
!! | CATTTATTAAGAAAATAAAA+GGG | + | chr3_4:38332684-38332703 | Msa0499480:intron | 10.0% |
!!! | TTGATATTATGATAAATTTT+AGG | - | chr3_4:38333226-38333245 | None:intergenic | 10.0% |
!!! | AATTTTTGTAGATTTTTAAA+AGG | + | chr3_4:38333661-38333680 | Msa0499480:intron | 10.0% |
!! | TTAGAAAGAAAATAAGAAAA+AGG | - | chr3_4:38330080-38330099 | None:intergenic | 15.0% |
!! | TTAATTAATCACAAAAATGT+TGG | - | chr3_4:38330296-38330315 | None:intergenic | 15.0% |
!! | TTAATGTCACATTAAAAAAT+TGG | - | chr3_4:38330397-38330416 | None:intergenic | 15.0% |
!!! | TTTTCACAAGATAAAAATAA+AGG | + | chr3_4:38330535-38330554 | Msa0499480:CDS | 15.0% |
!! | TTTCACAAGATAAAAATAAA+GGG | + | chr3_4:38330536-38330555 | Msa0499480:CDS | 15.0% |
!! | AAGCAGTTTAAATATAATAA+TGG | + | chr3_4:38331055-38331074 | Msa0499480:intron | 15.0% |
!!! | ACTTAATCCATAATAATTTT+AGG | - | chr3_4:38331167-38331186 | None:intergenic | 15.0% |
!! | AATAAAAAAATTAGTAAGGA+AGG | - | chr3_4:38331253-38331272 | None:intergenic | 15.0% |
!! | CTTAATTATTTAAAGAAAAG+TGG | + | chr3_4:38331398-38331417 | Msa0499480:intron | 15.0% |
!!! | AATTTTTGTTTTATTGAACT+TGG | + | chr3_4:38332444-38332463 | Msa0499480:intron | 15.0% |
!!! | ACAAAAACAAAAACTTTTTT+TGG | - | chr3_4:38332531-38332550 | None:intergenic | 15.0% |
!!! | AAAAAAGTTTTTGTTTTTGT+TGG | + | chr3_4:38332531-38332550 | Msa0499480:intron | 15.0% |
!!! | GTTGATTTTAATTTTGAAAA+TGG | + | chr3_4:38332553-38332572 | Msa0499480:intron | 15.0% |
!! | TAACAAAATTCTTAACATAA+AGG | + | chr3_4:38333188-38333207 | Msa0499480:intron | 15.0% |
!!! | AGATTTTTAAAAGGATTTTT+AGG | + | chr3_4:38333670-38333689 | Msa0499480:intron | 15.0% |
!!! | AGTTGTTAAAATTTACATTT+TGG | - | chr3_4:38335049-38335068 | None:intergenic | 15.0% |
!!! | AAATGTAAATTTTAACAACT+TGG | + | chr3_4:38335049-38335068 | Msa0499480:intron | 15.0% |
!! | AAATGAAAATAACAGAAAAT+AGG | + | chr3_4:38335079-38335098 | Msa0499480:intron | 15.0% |
!! | AATGAAAATAACAGAAAATA+GGG | + | chr3_4:38335080-38335099 | Msa0499480:intron | 15.0% |
!! | ACAAAAATAAAATCAACAAA+AGG | + | chr3_4:38335161-38335180 | Msa0499480:intron | 15.0% |
!! | AAAAATAAGAAAGGTTAAAA+TGG | + | chr3_4:38335842-38335861 | Msa0499480:intron | 15.0% |
!!! | TATATTAATTGATAATGAGT+TGG | - | chr3_4:38336096-38336115 | None:intergenic | 15.0% |
!!! | AATTAATCAGCTTTTATTTA+TGG | - | chr3_4:38336137-38336156 | None:intergenic | 15.0% |
!!! | ACTTTGAAATTTTATTCTTA+AGG | - | chr3_4:38336231-38336250 | None:intergenic | 15.0% |
!! | AAACTCTCCTTATATTTATT+AGG | + | chr3_4:38330245-38330264 | Msa0499480:intron | 20.0% |
!! | ATTAGAGTAAAAAATGCAAA+GGG | + | chr3_4:38330767-38330786 | Msa0499480:CDS | 20.0% |
!!! | CTTACTTTCTTTTTATTTGT+CGG | + | chr3_4:38330986-38331005 | Msa0499480:intron | 20.0% |
!!! | AATTTTAAGTCAAAAACACA+AGG | + | chr3_4:38331078-38331097 | Msa0499480:intron | 20.0% |
!!! | TTTTTTTTTAGGTTTAGGAA+AGG | - | chr3_4:38331127-38331146 | None:intergenic | 20.0% |
!!! | AATCCATAATAATTTTAGGT+AGG | - | chr3_4:38331163-38331182 | None:intergenic | 20.0% |
!! | ATCAAAAAAAAAACTTGTGT+GGG | - | chr3_4:38331337-38331356 | None:intergenic | 20.0% |
!! | TATCAAAAAAAAAACTTGTG+TGG | - | chr3_4:38331338-38331357 | None:intergenic | 20.0% |
!!! | TTATTTAAAACTTGTAGTTG+GGG | - | chr3_4:38331477-38331496 | None:intergenic | 20.0% |
!!! | GTTATTTAAAACTTGTAGTT+GGG | - | chr3_4:38331478-38331497 | None:intergenic | 20.0% |
!!! | TGTTATTTAAAACTTGTAGT+TGG | - | chr3_4:38331479-38331498 | None:intergenic | 20.0% |
!!! | CTACAAGTTTTAAATAACAA+AGG | + | chr3_4:38331480-38331499 | Msa0499480:intron | 20.0% |
!! | TGATAAATAATTATGTTCCA+TGG | + | chr3_4:38331603-38331622 | Msa0499480:intron | 20.0% |
!!! | AAAAGTAGAAGTTTTTCTAT+GGG | - | chr3_4:38331866-38331885 | None:intergenic | 20.0% |
!! | TTAAATCTAGATTGTTAGTT+TGG | - | chr3_4:38331889-38331908 | None:intergenic | 20.0% |
!! | AAGAAAAAATGAGATATCAA+AGG | - | chr3_4:38332210-38332229 | None:intergenic | 20.0% |
!!! | TTTGATATCTCATTTTTTCT+TGG | + | chr3_4:38332209-38332228 | Msa0499480:intron | 20.0% |
!!! | TTGATATCTCATTTTTTCTT+GGG | + | chr3_4:38332210-38332229 | Msa0499480:intron | 20.0% |
!!! | TGATTAGTTATTTTGCAAAA+AGG | + | chr3_4:38332636-38332655 | Msa0499480:intron | 20.0% |
!! | AAATAAAAGGGAAAATTCAA+TGG | + | chr3_4:38332696-38332715 | Msa0499480:intron | 20.0% |
!! | AATAAAAGGGAAAATTCAAT+GGG | + | chr3_4:38332697-38332716 | Msa0499480:intron | 20.0% |
!! | AAATAAAGTACAAAAAACCT+AGG | + | chr3_4:38332973-38332992 | Msa0499480:intron | 20.0% |
!!! | CATTTATTTTTTTCTTGCAA+AGG | - | chr3_4:38333014-38333033 | None:intergenic | 20.0% |
!! | CTTTGCAAGAAAAAAATAAA+TGG | + | chr3_4:38333012-38333031 | Msa0499480:intron | 20.0% |
!! | AAAATAAAGCTATAGAAATG+AGG | + | chr3_4:38333039-38333058 | Msa0499480:intron | 20.0% |
!! | AAATAAAGCTATAGAAATGA+GGG | + | chr3_4:38333040-38333059 | Msa0499480:intron | 20.0% |
!!! | ATATCATGACAATTTTTCAA+AGG | + | chr3_4:38333271-38333290 | Msa0499480:intron | 20.0% |
!!! | GATACATTTTTAGATACATT+TGG | + | chr3_4:38333349-38333368 | Msa0499480:intron | 20.0% |
!!! | TCTGCAATTTTTGAAAATAA+AGG | + | chr3_4:38334996-38335015 | Msa0499480:intron | 20.0% |
!!! | TTTTTGAAAATAAAGGACAA+AGG | + | chr3_4:38335003-38335022 | Msa0499480:intron | 20.0% |
!!! | TTTTGAAAATAAAGGACAAA+GGG | + | chr3_4:38335004-38335023 | Msa0499480:intron | 20.0% |
!!! | TTTTGAAAGGTTTTTTAACA+TGG | + | chr3_4:38335295-38335314 | Msa0499480:intron | 20.0% |
!! | TTGCAAAAATTCATGAAAAA+GGG | - | chr3_4:38335415-38335434 | None:intergenic | 20.0% |
!! | TTTGCAAAAATTCATGAAAA+AGG | - | chr3_4:38335416-38335435 | None:intergenic | 20.0% |
!!! | TATTTTTAGGTCCAAAATTA+GGG | + | chr3_4:38335695-38335714 | Msa0499480:intron | 20.0% |
!!! | ACCTTTCTTATTTTTAATAG+CGG | - | chr3_4:38335837-38335856 | None:intergenic | 20.0% |
!! | TTAATAAAGAAATTCTCCTA+TGG | + | chr3_4:38336287-38336306 | Msa0499480:intron | 20.0% |
!! | TTTAGATTAAACTTTACCAT+AGG | - | chr3_4:38336306-38336325 | None:intergenic | 20.0% |
!!! | GATATATACAGTAAGAATTT+TGG | - | chr3_4:38336348-38336367 | None:intergenic | 20.0% |
! | TAAGGAGCCTAATAAATATA+AGG | - | chr3_4:38330255-38330274 | None:intergenic | 25.0% |
! | ATGTCACATTAAAAAATTGG+AGG | - | chr3_4:38330394-38330413 | None:intergenic | 25.0% |
! | AAGATAAAAATAAAGGGAAG+AGG | + | chr3_4:38330542-38330561 | Msa0499480:CDS | 25.0% |
! | AGTATATGTGAATGTATCAT+TGG | + | chr3_4:38330719-38330738 | Msa0499480:CDS | 25.0% |
! | GATTAGAGTAAAAAATGCAA+AGG | + | chr3_4:38330766-38330785 | Msa0499480:CDS | 25.0% |
! | TAGCAAGATTGATATCATAT+GGG | - | chr3_4:38330862-38330881 | None:intergenic | 25.0% |
! | ATAGCAAGATTGATATCATA+TGG | - | chr3_4:38330863-38330882 | None:intergenic | 25.0% |
!! | AATCTTGCTATCAATAACAA+TGG | + | chr3_4:38330872-38330891 | Msa0499480:CDS | 25.0% |
!!! | TAATAATTTTAGGTAGGTGT+AGG | - | chr3_4:38331157-38331176 | None:intergenic | 25.0% |
! | ACACCTACCTAAAATTATTA+TGG | + | chr3_4:38331157-38331176 | Msa0499480:intron | 25.0% |
! | GTGAATGTAAATAATCAAGT+GGG | - | chr3_4:38331202-38331221 | None:intergenic | 25.0% |
! | AGTGAATGTAAATAATCAAG+TGG | - | chr3_4:38331203-38331222 | None:intergenic | 25.0% |
!! | TATTTAAAACTTGTAGTTGG+GGG | - | chr3_4:38331476-38331495 | None:intergenic | 25.0% |
! | AATAATTATGTTCCATGGTT+TGG | + | chr3_4:38331608-38331627 | Msa0499480:intron | 25.0% |
! | TTGGATTTGCAAAAACTAAA+TGG | + | chr3_4:38331627-38331646 | Msa0499480:intron | 25.0% |
! | TTTGCAAAAACTAAATGGAA+TGG | + | chr3_4:38331632-38331651 | Msa0499480:intron | 25.0% |
! | AAAAACTAAATGGAATGGAA+TGG | + | chr3_4:38331637-38331656 | Msa0499480:intron | 25.0% |
!! | AAAGTAGAAGTTTTTCTATG+GGG | - | chr3_4:38331865-38331884 | None:intergenic | 25.0% |
!! | GAAAAGTAGAAGTTTTTCTA+TGG | - | chr3_4:38331867-38331886 | None:intergenic | 25.0% |
!! | TAATTTTCACAATAGTCAGT+TGG | - | chr3_4:38332034-38332053 | None:intergenic | 25.0% |
!!! | AATTCTCTTTAAGGTGATTT+TGG | - | chr3_4:38332067-38332086 | None:intergenic | 25.0% |
! | AGCAGATTTAATTCTCTTTA+AGG | - | chr3_4:38332076-38332095 | None:intergenic | 25.0% |
!! | ACTTTTATTACCAATCAACA+AGG | + | chr3_4:38332119-38332138 | Msa0499480:intron | 25.0% |
!!! | ACTGTTTTATCTTGGTTTTT+CGG | + | chr3_4:38332150-38332169 | Msa0499480:intron | 25.0% |
! | TGAGATATCAAAGGTTAAAA+AGG | - | chr3_4:38332201-38332220 | None:intergenic | 25.0% |
! | AAAAACGTTATTTACACCTA+AGG | + | chr3_4:38332381-38332400 | Msa0499480:intron | 25.0% |
! | AAAACGTTATTTACACCTAA+GGG | + | chr3_4:38332382-38332401 | Msa0499480:intron | 25.0% |
!!! | TTTTGAAGAATAAGAGAGAA+AGG | + | chr3_4:38332578-38332597 | Msa0499480:intron | 25.0% |
!! | TAATTTTCCAAAGAAACCTT+GGG | - | chr3_4:38332731-38332750 | None:intergenic | 25.0% |
!! | ATAATTTTCCAAAGAAACCT+TGG | - | chr3_4:38332732-38332751 | None:intergenic | 25.0% |
! | GGATACTTTAGATGTATATA+GGG | - | chr3_4:38332838-38332857 | None:intergenic | 25.0% |
! | TGGATACTTTAGATGTATAT+AGG | - | chr3_4:38332839-38332858 | None:intergenic | 25.0% |
! | AATAAAGCTATAGAAATGAG+GGG | + | chr3_4:38333041-38333060 | Msa0499480:intron | 25.0% |
! | TGAATGAAACATGAAATGAA+AGG | + | chr3_4:38333084-38333103 | Msa0499480:intron | 25.0% |
! | GAATGAAACATGAAATGAAA+GGG | + | chr3_4:38333085-38333104 | Msa0499480:intron | 25.0% |
! | GAGTAGAAATTATAAGCAAA+AGG | + | chr3_4:38333129-38333148 | Msa0499480:intron | 25.0% |
! | TGAAAAATTGTCATGATATG+AGG | - | chr3_4:38333270-38333289 | None:intergenic | 25.0% |
!!! | TTTAAAAGGATTTTTAGGCA+TGG | + | chr3_4:38333675-38333694 | Msa0499480:intron | 25.0% |
! | GTGAAAAATAGAGTAGTTTA+GGG | - | chr3_4:38334148-38334167 | None:intergenic | 25.0% |
! | TGTGAAAAATAGAGTAGTTT+AGG | - | chr3_4:38334149-38334168 | None:intergenic | 25.0% |
!!! | ACTCTGATTTGGAAAATAAA+CGG | + | chr3_4:38334185-38334204 | Msa0499480:intron | 25.0% |
! | GGTTTGTAAATACGAATAAA+CGG | - | chr3_4:38334319-38334338 | None:intergenic | 25.0% |
! | TGATGATATGACCTTTATAT+AGG | + | chr3_4:38334809-38334828 | Msa0499480:intron | 25.0% |
!!! | CTTTTTTTCAAATTGCAGTT+TGG | - | chr3_4:38334942-38334961 | None:intergenic | 25.0% |
! | CAAACTGCAATTTGAAAAAA+AGG | + | chr3_4:38334940-38334959 | Msa0499480:intron | 25.0% |
!!! | AAGTTTCAAGTCTTTGTTTT+TGG | - | chr3_4:38334966-38334985 | None:intergenic | 25.0% |
! | AACAAAGACTTGAAACTTAA+AGG | + | chr3_4:38334968-38334987 | Msa0499480:intron | 25.0% |
!!! | TGTAAATTTTAACAACTTGG+AGG | + | chr3_4:38335052-38335071 | Msa0499480:intron | 25.0% |
!! | ACTCAAATGCAATTTTTGAA+AGG | + | chr3_4:38335282-38335301 | Msa0499480:intron | 25.0% |
! | ATTAAAATGAGTTTGAATGC+AGG | + | chr3_4:38335375-38335394 | Msa0499480:intron | 25.0% |
!! | CATTTAAAACCATCCAAAAA+GGG | - | chr3_4:38335513-38335532 | None:intergenic | 25.0% |
! | TAAAATATGCAGATAAAGCA+TGG | + | chr3_4:38335585-38335604 | Msa0499480:intron | 25.0% |
! | ATAAAGCATGGTAAAATATC+AGG | + | chr3_4:38335597-38335616 | Msa0499480:intron | 25.0% |
! | TAAAGCATGGTAAAATATCA+GGG | + | chr3_4:38335598-38335617 | Msa0499480:intron | 25.0% |
!! | CATTTTGAGCAAGTATTTTT+AGG | + | chr3_4:38335682-38335701 | Msa0499480:intron | 25.0% |
!!! | GTATTTTTAGGTCCAAAATT+AGG | + | chr3_4:38335694-38335713 | Msa0499480:intron | 25.0% |
! | ACAACTTATGTTCTTGTTAA+CGG | - | chr3_4:38335917-38335936 | None:intergenic | 25.0% |
! | AAATGTATTTACCAACGTTA+TGG | - | chr3_4:38335968-38335987 | None:intergenic | 25.0% |
AAAAAGGATCAATGAGAGAT+GGG | - | chr3_4:38330064-38330083 | None:intergenic | 30.0% | |
! | TAAGTGTCAAACTTCTGAAA+TGG | + | chr3_4:38330097-38330116 | Msa0499480:CDS | 30.0% |
TTCATTTCATCTTCATCTTG+AGG | - | chr3_4:38330143-38330162 | None:intergenic | 30.0% | |
TGAGACTGAATCATAGAATT+AGG | - | chr3_4:38330167-38330186 | None:intergenic | 30.0% | |
TTCATCTTCATCTTCATCTT+CGG | - | chr3_4:38330198-38330217 | None:intergenic | 30.0% | |
AAAGATTGAACGTCAACTTA+AGG | - | chr3_4:38330273-38330292 | None:intergenic | 30.0% | |
!! | TTAGTCTTACTTCAATGATG+AGG | + | chr3_4:38330339-38330358 | Msa0499480:intron | 30.0% |
ATTTGTCTTCCATTACTAAC+TGG | - | chr3_4:38330478-38330497 | None:intergenic | 30.0% | |
! | AGTTAGTAATGGAAGACAAA+TGG | + | chr3_4:38330477-38330496 | Msa0499480:CDS | 30.0% |
! | GTTAGTAATGGAAGACAAAT+GGG | + | chr3_4:38330478-38330497 | Msa0499480:CDS | 30.0% |
! | GGTAAAGAAAGGTCTTTTTA+TGG | - | chr3_4:38330826-38330845 | None:intergenic | 30.0% |
AAACTGATGTAGGTAAAGAA+AGG | - | chr3_4:38330837-38330856 | None:intergenic | 30.0% | |
GCCATTCATAGAGAAATATT+CGG | + | chr3_4:38330914-38330933 | Msa0499480:CDS | 30.0% | |
ACCGAATATTTCTCTATGAA+TGG | - | chr3_4:38330918-38330937 | None:intergenic | 30.0% | |
GTGTAAATAACTAGTAAGGT+AGG | - | chr3_4:38331291-38331310 | None:intergenic | 30.0% | |
GTGAGTGTAAATAACTAGTA+AGG | - | chr3_4:38331295-38331314 | None:intergenic | 30.0% | |
TGGGTGTAAATTAACAAAGT+GGG | + | chr3_4:38331418-38331437 | Msa0499480:intron | 30.0% | |
AAGTTGCTAATTTACTCCTT+AGG | + | chr3_4:38331536-38331555 | Msa0499480:intron | 30.0% | |
GGAATGGAATGGTATATAAT+TGG | + | chr3_4:38331648-38331667 | Msa0499480:intron | 30.0% | |
TTTGATGGAATAAGATGGAA+TGG | - | chr3_4:38331677-38331696 | None:intergenic | 30.0% | |
AATAGAAGAAATGATACCTG+CGG | + | chr3_4:38331770-38331789 | Msa0499480:intron | 30.0% | |
! | AAGTAGAAGTTTTTCTATGG+GGG | - | chr3_4:38331864-38331883 | None:intergenic | 30.0% |
GATTTAATATGATCAACCAG+AGG | + | chr3_4:38331902-38331921 | Msa0499480:intron | 30.0% | |
!! | ATTAAATTTTTGGACACCTC+TGG | - | chr3_4:38331921-38331940 | None:intergenic | 30.0% |
GAAAAACCAAGATAAAACAG+TGG | - | chr3_4:38332151-38332170 | None:intergenic | 30.0% | |
!! | CTGTTTTATCTTGGTTTTTC+GGG | + | chr3_4:38332151-38332170 | Msa0499480:intron | 30.0% |
!!! | TATCTCATTTTTTCTTGGGA+AGG | + | chr3_4:38332214-38332233 | Msa0499480:intron | 30.0% |
!!! | ATCTCATTTTTTCTTGGGAA+GGG | + | chr3_4:38332215-38332234 | Msa0499480:intron | 30.0% |
TAGGATACTATAGTTGCTAT+AGG | - | chr3_4:38332309-38332328 | None:intergenic | 30.0% | |
TAGCAACTATAGTATCCTAT+AGG | + | chr3_4:38332310-38332329 | Msa0499480:intron | 30.0% | |
!!! | TTTTTTGGAAGAGAACTACA+TGG | - | chr3_4:38332516-38332535 | None:intergenic | 30.0% |
!! | ATAGGATTTTGGAAAATGTG+AGG | + | chr3_4:38332611-38332630 | Msa0499480:intron | 30.0% |
! | TATGCTTTAGATGTATGCTT+AGG | - | chr3_4:38332811-38332830 | None:intergenic | 30.0% |
GTAGCAAAAACTTGACAAAA+AGG | + | chr3_4:38333165-38333184 | Msa0499480:intron | 30.0% | |
TGTCATGATATGAGGATTAT+AGG | - | chr3_4:38333262-38333281 | None:intergenic | 30.0% | |
AACAGCATGTATCAAGAATT+AGG | + | chr3_4:38333499-38333518 | Msa0499480:intron | 30.0% | |
!! | TTCATTTTGTGATGTTTCTG+TGG | - | chr3_4:38333626-38333645 | None:intergenic | 30.0% |
TACGAATATGAACTCTGATT+TGG | + | chr3_4:38334174-38334193 | Msa0499480:intron | 30.0% | |
!!! | CTTTTTCAAAGTCTTTTCGA+AGG | + | chr3_4:38334258-38334277 | Msa0499480:intron | 30.0% |
GATTCGAACAAAGAAATCTT+CGG | + | chr3_4:38334400-38334419 | Msa0499480:intron | 30.0% | |
GTGTTGAACCGAAAATAAAT+CGG | + | chr3_4:38334457-38334476 | Msa0499480:intron | 30.0% | |
!!! | AGGAATCACCGATTTATTTT+CGG | - | chr3_4:38334468-38334487 | None:intergenic | 30.0% |
ATGAATCATCATCATTGAAC+CGG | - | chr3_4:38334587-38334606 | None:intergenic | 30.0% | |
! | TTTGCTTCAATTTTGTGTTC+TGG | + | chr3_4:38334645-38334664 | Msa0499480:intron | 30.0% |
!!! | ATTTTGTGTTCTGGAAAGTT+AGG | + | chr3_4:38334654-38334673 | Msa0499480:intron | 30.0% |
!!! | TTTTGTGTTCTGGAAAGTTA+GGG | + | chr3_4:38334655-38334674 | Msa0499480:intron | 30.0% |
!! | ATTCTTGGTGTTCTTGAAAA+CGG | + | chr3_4:38334697-38334716 | Msa0499480:intron | 30.0% |
!! | AGGATTTTGATCTTTGATTC+TGG | + | chr3_4:38334722-38334741 | Msa0499480:intron | 30.0% |
TAAGTCCATAATTTAGTCCA+AGG | - | chr3_4:38334887-38334906 | None:intergenic | 30.0% | |
TTGGACTAAATTATGGACTT+AGG | + | chr3_4:38334886-38334905 | Msa0499480:intron | 30.0% | |
AAGTTTGTCAAATTGCAGAA+AGG | - | chr3_4:38334913-38334932 | None:intergenic | 30.0% | |
CTGCAATTTGACAAACTTAA+AGG | + | chr3_4:38334915-38334934 | Msa0499480:intron | 30.0% | |
AATGAACCAACTACAAAATG+AGG | + | chr3_4:38335189-38335208 | Msa0499480:intron | 30.0% | |
! | TAAGTACCTCATTTTGTAGT+TGG | - | chr3_4:38335198-38335217 | None:intergenic | 30.0% |
!! | CATAAAATTTTGACAGAGAG+AGG | - | chr3_4:38335228-38335247 | None:intergenic | 30.0% |
AGACAAATTCAAATGACTTG+AGG | + | chr3_4:38335477-38335496 | Msa0499480:intron | 30.0% | |
! | GCATTTAAAACCATCCAAAA+AGG | - | chr3_4:38335514-38335533 | None:intergenic | 30.0% |
AGGGTAAAACAATAGCAAAT+TGG | + | chr3_4:38335617-38335636 | Msa0499480:intron | 30.0% | |
! | TGGATGTTATACCCTAATTT+TGG | - | chr3_4:38335709-38335728 | None:intergenic | 30.0% |
!!! | TTCTTATTTTTAATAGCGGC+CGG | - | chr3_4:38335833-38335852 | None:intergenic | 30.0% |
GCCGCTATTAAAAATAAGAA+AGG | + | chr3_4:38335833-38335852 | Msa0499480:intron | 30.0% | |
GTTAAAATGGATCACCTTAA+CGG | + | chr3_4:38335855-38335874 | Msa0499480:intron | 30.0% | |
TTAAAATGGATCACCTTAAC+GGG | + | chr3_4:38335856-38335875 | Msa0499480:intron | 30.0% | |
! | TATGGTCGTCAAATTTTTGA+CGG | - | chr3_4:38336119-38336138 | None:intergenic | 30.0% |
GAAAAAGGATCAATGAGAGA+TGG | - | chr3_4:38330065-38330084 | None:intergenic | 35.0% | |
TGAGGCTGAATCATAGAATT+AGG | - | chr3_4:38330125-38330144 | None:intergenic | 35.0% | |
GAAGATTATGACTCTCAAGA+TGG | + | chr3_4:38330215-38330234 | Msa0499480:CDS | 35.0% | |
ACTTCAATGATGAGGCAATT+AGG | + | chr3_4:38330347-38330366 | Msa0499480:intron | 35.0% | |
TGGAGGAAAAATTATGCACA+TGG | - | chr3_4:38330377-38330396 | None:intergenic | 35.0% | |
! | TCGTTTTACACCATCTTTGT+AGG | - | chr3_4:38330597-38330616 | None:intergenic | 35.0% |
GACTTGTAGATGCAATAGAA+AGG | + | chr3_4:38330615-38330634 | Msa0499480:CDS | 35.0% | |
GAATGTATCATTGGAGAAGA+TGG | + | chr3_4:38330728-38330747 | Msa0499480:CDS | 35.0% | |
TCATTGGAGAAGATGGTAAA+AGG | + | chr3_4:38330735-38330754 | Msa0499480:CDS | 35.0% | |
CATATGGGAAAAACTGATGT+AGG | - | chr3_4:38330847-38330866 | None:intergenic | 35.0% | |
GTAAATAATCAAGTGGGTGT+AGG | - | chr3_4:38331196-38331215 | None:intergenic | 35.0% | |
GTGGGTGTAAATTAACAAAG+TGG | + | chr3_4:38331417-38331436 | Msa0499480:intron | 35.0% | |
CATCAATCAAACACAACCTA+AGG | - | chr3_4:38331555-38331574 | None:intergenic | 35.0% | |
! | CTTAGGTTGTGTTTGATTGA+TGG | + | chr3_4:38331553-38331572 | Msa0499480:intron | 35.0% |
GTTTGATTGATGGAATGTGA+TGG | + | chr3_4:38331563-38331582 | Msa0499480:intron | 35.0% | |
! | GTTTTTGCAAATCCAAACCA+TGG | - | chr3_4:38331623-38331642 | None:intergenic | 35.0% |
GAGGATTTGATGGAATAAGA+TGG | - | chr3_4:38331682-38331701 | None:intergenic | 35.0% | |
ATGAAAAGTGGAGGATTTGA+TGG | - | chr3_4:38331692-38331711 | None:intergenic | 35.0% | |
TATTGGATACACCCCAAATT+GGG | - | chr3_4:38331719-38331738 | None:intergenic | 35.0% | |
ATAGAAGAAATGATACCTGC+GGG | + | chr3_4:38331771-38331790 | Msa0499480:intron | 35.0% | |
! | TATTTGGGTTTACCTATAGG+TGG | - | chr3_4:38331956-38331975 | None:intergenic | 35.0% |
! | TCGTATTTGGGTTTACCTAT+AGG | - | chr3_4:38331959-38331978 | None:intergenic | 35.0% |
TTCACAATAGTCAGTTGGTT+TGG | - | chr3_4:38332029-38332048 | None:intergenic | 35.0% | |
TGCTTTCGAAGATCTAATGT+TGG | + | chr3_4:38332092-38332111 | Msa0499480:intron | 35.0% | |
! | TGTCATCCACTGTTTTATCT+TGG | + | chr3_4:38332142-38332161 | Msa0499480:intron | 35.0% |
!!! | TTTTGGTATAGGAAGGTGTT+AGG | + | chr3_4:38332281-38332300 | Msa0499480:intron | 35.0% |
AAAGTAAAGACGGTTCCTAT+AGG | - | chr3_4:38332328-38332347 | None:intergenic | 35.0% | |
TTTGCTAGGTTAAGAATTGG+AGG | + | chr3_4:38332405-38332424 | Msa0499480:intron | 35.0% | |
TTGCTAGGTTAAGAATTGGA+GGG | + | chr3_4:38332406-38332425 | Msa0499480:intron | 35.0% | |
! | TTGCCTACATACCCTTTTAA+GGG | + | chr3_4:38332482-38332501 | Msa0499480:intron | 35.0% |
TGGAGTTTGATCCCTTAAAA+GGG | - | chr3_4:38332496-38332515 | None:intergenic | 35.0% | |
ATGGAGTTTGATCCCTTAAA+AGG | - | chr3_4:38332497-38332516 | None:intergenic | 35.0% | |
! | TTTTGATCCCAAGGTTTCTT+TGG | + | chr3_4:38332721-38332740 | Msa0499480:intron | 35.0% |
AGACCATAGCATGTAAACTA+GGG | - | chr3_4:38332932-38332951 | None:intergenic | 35.0% | |
AAGACCATAGCATGTAAACT+AGG | - | chr3_4:38332933-38332952 | None:intergenic | 35.0% | |
! | ATGAAAGGGTTAGTAGCATA+AGG | + | chr3_4:38333099-38333118 | Msa0499480:intron | 35.0% |
TACTGAATGTTAACGTGTTG+TGG | - | chr3_4:38333427-38333446 | None:intergenic | 35.0% | |
!! | GTTTTTGGATCTGGTTGTTT+GGG | - | chr3_4:38333784-38333803 | None:intergenic | 35.0% |
!!! | TGTTTTTGGATCTGGTTGTT+TGG | - | chr3_4:38333785-38333804 | None:intergenic | 35.0% |
TGAAACAAACCAGTAGCTTA+GGG | - | chr3_4:38333926-38333945 | None:intergenic | 35.0% | |
ATGAAACAAACCAGTAGCTT+AGG | - | chr3_4:38333927-38333946 | None:intergenic | 35.0% | |
! | CAAAGTCTTTTCGAAGGAAA+AGG | + | chr3_4:38334264-38334283 | Msa0499480:intron | 35.0% |
AAGAAGAAGGATTGAAGAAG+AGG | - | chr3_4:38334488-38334507 | None:intergenic | 35.0% | |
AATCGAAGTTGAGAAGAAGA+AGG | - | chr3_4:38334501-38334520 | None:intergenic | 35.0% | |
GAAAGTTAGGGTTTGGATTT+GGG | + | chr3_4:38334667-38334686 | Msa0499480:intron | 35.0% | |
AAAGTTAGGGTTTGGATTTG+GGG | + | chr3_4:38334668-38334687 | Msa0499480:intron | 35.0% | |
GATTTGGGGATGAATATTCT+TGG | + | chr3_4:38334682-38334701 | Msa0499480:intron | 35.0% | |
ACTTGCCTTGGACTAAATTA+TGG | + | chr3_4:38334879-38334898 | Msa0499480:intron | 35.0% | |
TAAAGGACAAAGGGCAAAAA+TGG | + | chr3_4:38335013-38335032 | Msa0499480:intron | 35.0% | |
TTGAGTCAATTTAGTCCCTA+GGG | - | chr3_4:38335268-38335287 | None:intergenic | 35.0% | |
TTTGAGTCAATTTAGTCCCT+AGG | - | chr3_4:38335269-38335288 | None:intergenic | 35.0% | |
! | AAGACTCAGAGACAATTTTC+AGG | + | chr3_4:38335351-38335370 | Msa0499480:intron | 35.0% |
! | AGACTCAGAGACAATTTTCA+GGG | + | chr3_4:38335352-38335371 | Msa0499480:intron | 35.0% |
TCAAAGACACATATCAGAGA+TGG | + | chr3_4:38335654-38335673 | Msa0499480:intron | 35.0% | |
ACATCCACAAATTGAAGATG+CGG | + | chr3_4:38335722-38335741 | Msa0499480:intron | 35.0% | |
! | TTTTCCGCATCTTCAATTTG+TGG | - | chr3_4:38335729-38335748 | None:intergenic | 35.0% |
!!! | TATAAGGTTGGTGATGGTTT+TGG | - | chr3_4:38335758-38335777 | None:intergenic | 35.0% |
AGATCTCTTCTCTGGTTATA+AGG | - | chr3_4:38335774-38335793 | None:intergenic | 35.0% | |
ATAGTAGAAGATCTCTTCTC+TGG | - | chr3_4:38335782-38335801 | None:intergenic | 35.0% | |
GAAGAGATCTTCTACTATAG+TGG | + | chr3_4:38335784-38335803 | Msa0499480:intron | 35.0% | |
!!! | TCTTATTTTTAATAGCGGCC+GGG | - | chr3_4:38335832-38335851 | None:intergenic | 35.0% |
TAAAATGGATCACCTTAACG+GGG | + | chr3_4:38335857-38335876 | Msa0499480:intron | 35.0% | |
ATCTATTTCCTCCATAACGT+TGG | + | chr3_4:38335954-38335973 | Msa0499480:intron | 35.0% | |
TGTATTTACCAACGTTATGG+AGG | - | chr3_4:38335965-38335984 | None:intergenic | 35.0% | |
CTCAGAGGATTGAAATTACT+TGG | - | chr3_4:38336006-38336025 | None:intergenic | 35.0% | |
AGTAGCTAGCCAATTAGATA+AGG | - | chr3_4:38336179-38336198 | None:intergenic | 35.0% | |
AGGTGTAGTTGTGATCTAAA+TGG | - | chr3_4:38336211-38336230 | None:intergenic | 35.0% | |
TGTCTTCCATTACTAACTGG+CGG | - | chr3_4:38330475-38330494 | None:intergenic | 40.0% | |
AAGAGGAACAGCATTACATG+TGG | + | chr3_4:38330559-38330578 | Msa0499480:CDS | 40.0% | |
GTAAGCAATGCCTACAAAGA+TGG | + | chr3_4:38330584-38330603 | Msa0499480:CDS | 40.0% | |
GTAGATGCAATAGAAAGGCA+TGG | + | chr3_4:38330620-38330639 | Msa0499480:CDS | 40.0% | |
CTATATGCTGCACTATGAAG+AGG | - | chr3_4:38330689-38330708 | None:intergenic | 40.0% | |
CTTCATAGTGCAGCATATAG+AGG | + | chr3_4:38330689-38330708 | Msa0499480:intron | 40.0% | |
ATGAATGGCAACGTGAAGAA+TGG | - | chr3_4:38330903-38330922 | None:intergenic | 40.0% | |
ATTAGCAACTTGCACTCACT+TGG | - | chr3_4:38331527-38331546 | None:intergenic | 40.0% | |
! | ATTGATGGAATGTGATGGAG+TGG | + | chr3_4:38331568-38331587 | Msa0499480:intron | 40.0% |
! | TTGATGGAATGTGATGGAGT+GGG | + | chr3_4:38331569-38331588 | Msa0499480:intron | 40.0% |
AAATTGGGGGGAATGAAAAG+TGG | - | chr3_4:38331704-38331723 | None:intergenic | 40.0% | |
! | ACTTTTCATTCCCCCCAATT+TGG | + | chr3_4:38331703-38331722 | Msa0499480:intron | 40.0% |
! | CTTTTCATTCCCCCCAATTT+GGG | + | chr3_4:38331704-38331723 | Msa0499480:intron | 40.0% |
! | TTTTCATTCCCCCCAATTTG+GGG | + | chr3_4:38331705-38331724 | Msa0499480:intron | 40.0% |
ATTGGATACACCCCAAATTG+GGG | - | chr3_4:38331718-38331737 | None:intergenic | 40.0% | |
CTATTGGATACACCCCAAAT+TGG | - | chr3_4:38331720-38331739 | None:intergenic | 40.0% | |
CTACTACCTTTCCTTCTTCA+AGG | - | chr3_4:38331799-38331818 | None:intergenic | 40.0% | |
AAGAAGGAAAGGTAGTAGAC+CGG | + | chr3_4:38331801-38331820 | Msa0499480:intron | 40.0% | |
GTCTGTCATATCCTTTCTTC+CGG | - | chr3_4:38331823-38331842 | None:intergenic | 40.0% | |
GAAAGGATATGACAGACTTC+AGG | + | chr3_4:38331826-38331845 | Msa0499480:intron | 40.0% | |
TTTCGATTATCGCCACCTAT+AGG | + | chr3_4:38331941-38331960 | Msa0499480:intron | 40.0% | |
AGGTAAACCCAAATACGAGA+AGG | + | chr3_4:38331961-38331980 | Msa0499480:intron | 40.0% | |
GGTAAACCCAAATACGAGAA+GGG | + | chr3_4:38331962-38331981 | Msa0499480:intron | 40.0% | |
TCTCTACCCTTCTCGTATTT+GGG | - | chr3_4:38331971-38331990 | None:intergenic | 40.0% | |
ATCTCTACCCTTCTCGTATT+TGG | - | chr3_4:38331972-38331991 | None:intergenic | 40.0% | |
ACGGTGCTTAGTTGTAAAAC+TGG | - | chr3_4:38331995-38332014 | None:intergenic | 40.0% | |
GAAAAAACCCTTGAGAATCG+AGG | + | chr3_4:38332246-38332265 | Msa0499480:intron | 40.0% | |
!!! | GAGTTGGTTTTGGTATAGGA+AGG | + | chr3_4:38332274-38332293 | Msa0499480:intron | 40.0% |
! | TTTACACCTAAGGGTTTGCT+AGG | + | chr3_4:38332391-38332410 | Msa0499480:intron | 40.0% |
TCTTAACCTAGCAAACCCTT+AGG | - | chr3_4:38332400-38332419 | None:intergenic | 40.0% | |
!! | GGGTTTGCTAGGTTAAGAAT+TGG | + | chr3_4:38332402-38332421 | Msa0499480:intron | 40.0% |
! | CTTGCCTACATACCCTTTTA+AGG | + | chr3_4:38332481-38332500 | Msa0499480:intron | 40.0% |
! | GATCCCTTAAAAGGGTATGT+AGG | - | chr3_4:38332488-38332507 | None:intergenic | 40.0% |
AATAAGAGAGAAAGGCCTCA+AGG | + | chr3_4:38332586-38332605 | Msa0499480:intron | 40.0% | |
ATAAGAGAGAAAGGCCTCAA+GGG | + | chr3_4:38332587-38332606 | Msa0499480:intron | 40.0% | |
!! | TCAATGGGATTTTGATCCCA+AGG | + | chr3_4:38332712-38332731 | Msa0499480:intron | 40.0% |
GTAAACTAGGGCCTATGTAA+CGG | - | chr3_4:38332920-38332939 | None:intergenic | 40.0% | |
GGACTTAGCATGTATAACCT+AGG | - | chr3_4:38332993-38333012 | None:intergenic | 40.0% | |
TATAGAAATGAGGGGAGATG+AGG | + | chr3_4:38333049-38333068 | Msa0499480:intron | 40.0% | |
!! | AAAGGATTTTTAGGCATGGC+AGG | + | chr3_4:38333679-38333698 | Msa0499480:intron | 40.0% |
!! | AAGGATTTTTAGGCATGGCA+GGG | + | chr3_4:38333680-38333699 | Msa0499480:intron | 40.0% |
TCCAGTACAAAAATAAGCCC+AGG | + | chr3_4:38333758-38333777 | Msa0499480:intron | 40.0% | |
ATCCACATGGATCAATCCTA+CGG | - | chr3_4:38333826-38333845 | None:intergenic | 40.0% | |
TGGATCTAACCTAGATCCTA+TGG | + | chr3_4:38333841-38333860 | Msa0499480:intron | 40.0% | |
ATCTAACCTAGATCCTATGG+TGG | + | chr3_4:38333844-38333863 | Msa0499480:intron | 40.0% | |
! | GCTTTTATAGAGGACTGAAC+CGG | - | chr3_4:38333904-38333923 | None:intergenic | 40.0% |
! | GTAGCTTAGGGCTTTTATAG+AGG | - | chr3_4:38333914-38333933 | None:intergenic | 40.0% |
CTATAAAAGCCCTAAGCTAC+TGG | + | chr3_4:38333914-38333933 | Msa0499480:intron | 40.0% | |
TCACTTCTCTTTCTCTCTCT+AGG | + | chr3_4:38333950-38333969 | Msa0499480:intron | 40.0% | |
CGGAGAAGATGAAGATTCAT+CGG | + | chr3_4:38334052-38334071 | Msa0499480:intron | 40.0% | |
GGGTTTAGATCCATGTAGAT+CGG | - | chr3_4:38334128-38334147 | None:intergenic | 40.0% | |
AACGGTGAATCAGAGTAGAT+CGG | - | chr3_4:38334301-38334320 | None:intergenic | 40.0% | |
! | CTTCTCGTTTTCATCGCAAA+AGG | - | chr3_4:38334351-38334370 | None:intergenic | 40.0% |
! | CTTTTGCGATGAAAACGAGA+AGG | + | chr3_4:38334349-38334368 | Msa0499480:intron | 40.0% |
! | TGAAAACGAGAAGGTTTTCG+TGG | + | chr3_4:38334358-38334377 | Msa0499480:intron | 40.0% |
TCGAATCTCCATTTCAACTC+AGG | - | chr3_4:38334387-38334406 | None:intergenic | 40.0% | |
GTAGAAGTTTCGAATCCTTC+TGG | + | chr3_4:38334431-38334450 | Msa0499480:intron | 40.0% | |
AAGTTTCGAATCCTTCTGGT+AGG | + | chr3_4:38334435-38334454 | Msa0499480:intron | 40.0% | |
TGCTTGAATTGCAGAACAAC+CGG | + | chr3_4:38334565-38334584 | Msa0499480:intron | 40.0% | |
!! | TGTTCTGGAAAGTTAGGGTT+TGG | + | chr3_4:38334660-38334679 | Msa0499480:intron | 40.0% |
GGAAAGTTAGGGTTTGGATT+TGG | + | chr3_4:38334666-38334685 | Msa0499480:intron | 40.0% | |
TGGTGTTCTTGAAAACGGTT+AGG | + | chr3_4:38334702-38334721 | Msa0499480:intron | 40.0% | |
! | TTGATTCTGGAGAGAGAATG+TGG | + | chr3_4:38334735-38334754 | Msa0499480:intron | 40.0% |
! | TGGAATGGTGTTTGTTGAGT+TGG | + | chr3_4:38334755-38334774 | Msa0499480:intron | 40.0% |
!! | AATGGTGTTTGTTGAGTTGG+CGG | + | chr3_4:38334758-38334777 | Msa0499480:intron | 40.0% |
ACACATGGCAGCCTATATAA+AGG | - | chr3_4:38334823-38334842 | None:intergenic | 40.0% | |
AAGGGCAAAAATGGACAAAG+AGG | + | chr3_4:38335022-38335041 | Msa0499480:intron | 40.0% | |
AAATGACCAAAATGCCCCTA+GGG | + | chr3_4:38335250-38335269 | Msa0499480:intron | 40.0% | |
TGAGTCAATTTAGTCCCTAG+GGG | - | chr3_4:38335267-38335286 | None:intergenic | 40.0% | |
! | AGGTGCAAGAAAACCCTTTT+TGG | + | chr3_4:38335497-38335516 | Msa0499480:intron | 40.0% |
! | GCAAGAAAACCCTTTTTGGA+TGG | + | chr3_4:38335501-38335520 | Msa0499480:intron | 40.0% |
!! | TCTGGTTATAAGGTTGGTGA+TGG | - | chr3_4:38335764-38335783 | None:intergenic | 40.0% |
CTCTTCTCTGGTTATAAGGT+TGG | - | chr3_4:38335770-38335789 | None:intergenic | 40.0% | |
CATCATAACATTAAGACCCC+CGG | + | chr3_4:38335811-38335830 | Msa0499480:intron | 40.0% | |
!!! | TTATTTTTAATAGCGGCCGG+GGG | - | chr3_4:38335830-38335849 | None:intergenic | 40.0% |
!!! | CTTATTTTTAATAGCGGCCG+GGG | - | chr3_4:38335831-38335850 | None:intergenic | 40.0% |
!! | CGAGAAAGTTTTTGACTCAG+AGG | - | chr3_4:38336021-38336040 | None:intergenic | 40.0% |
TTAGATAAGGACAGAGGAGA+GGG | - | chr3_4:38336166-38336185 | None:intergenic | 40.0% | |
ATTAGATAAGGACAGAGGAG+AGG | - | chr3_4:38336167-38336186 | None:intergenic | 40.0% | |
CTCCTCTGTCCTTATCTAAT+TGG | + | chr3_4:38336167-38336186 | Msa0499480:intron | 40.0% | |
AGCCAATTAGATAAGGACAG+AGG | - | chr3_4:38336172-38336191 | None:intergenic | 40.0% | |
! | GTATCCGATTTTTCGCTCTA+TGG | + | chr3_4:38336424-38336443 | Msa0499480:CDS | 40.0% |
TCCTCCATAGAGCGAAAAAT+CGG | - | chr3_4:38336431-38336450 | None:intergenic | 40.0% | |
CTAGTAGCAAGAAGTTCAAG+AGG | - | chr3_4:38336470-38336489 | None:intergenic | 40.0% | |
CTCTTGAACTTCTTGCTACT+AGG | + | chr3_4:38336468-38336487 | Msa0499480:CDS | 40.0% | |
AGGAAATCAGCTTTCAAGAG+TGG | + | chr3_4:38336488-38336507 | Msa0499480:CDS | 40.0% | |
AGAGTGGAAATAAGCTATCG+TGG | + | chr3_4:38336504-38336523 | Msa0499480:CDS | 40.0% | |
! | AGATGGGTAGTGGTGATGTA+AGG | - | chr3_4:38330048-38330067 | None:intergenic | 45.0% |
GATCAATGAGAGATGGGTAG+TGG | - | chr3_4:38330058-38330077 | None:intergenic | 45.0% | |
CATTACTAACTGGCGGAACA+CGG | - | chr3_4:38330468-38330487 | None:intergenic | 45.0% | |
! | GAAAGGCATGGTGATCTAAG+TGG | + | chr3_4:38330632-38330651 | Msa0499480:CDS | 45.0% |
! | AGGGAGAAACACCACTCTTT+TGG | + | chr3_4:38330786-38330805 | Msa0499480:CDS | 45.0% |
! | GGGAGAAACACCACTCTTTT+GGG | + | chr3_4:38330787-38330806 | Msa0499480:CDS | 45.0% |
TTGGATACACCCCAAATTGG+GGG | - | chr3_4:38331717-38331736 | None:intergenic | 45.0% | |
AAGGTAGTAGACCGGAAGAA+AGG | + | chr3_4:38331809-38331828 | Msa0499480:intron | 45.0% | |
! | TGGTTTGGCAGAAGCTTCAA+CGG | - | chr3_4:38332014-38332033 | None:intergenic | 45.0% |
GTGGATGACACCTTGTTGAT+TGG | - | chr3_4:38332132-38332151 | None:intergenic | 45.0% | |
AACCCTTGAGAATCGAGGTT+CGG | + | chr3_4:38332251-38332270 | Msa0499480:intron | 45.0% | |
!!! | TCGGGAGTTGGTTTTGGTAT+AGG | + | chr3_4:38332270-38332289 | Msa0499480:intron | 45.0% |
GCGTGCGTAGAAAGTAAAGA+CGG | - | chr3_4:38332338-38332357 | None:intergenic | 45.0% | |
TTGGAGGGAGAAGAATGTGT+TGG | + | chr3_4:38332421-38332440 | Msa0499480:intron | 45.0% | |
TCCAAAATCCTATGCCCTTG+AGG | - | chr3_4:38332604-38332623 | None:intergenic | 45.0% | |
ACACATGCACACACATCACA+TGG | - | chr3_4:38332859-38332878 | None:intergenic | 45.0% | |
TGTGATGTGTGTGCATGTGT+CGG | + | chr3_4:38332859-38332878 | Msa0499480:intron | 45.0% | |
GAGTCCATTGTCCGTTACAT+AGG | + | chr3_4:38332906-38332925 | Msa0499480:intron | 45.0% | |
AGGCCCTAGTTTACATGCTA+TGG | + | chr3_4:38332926-38332945 | Msa0499480:intron | 45.0% | |
!! | AGGATTTTTAGGCATGGCAG+GGG | + | chr3_4:38333681-38333700 | Msa0499480:intron | 45.0% |
!!! | GCCTGGGCTTATTTTTGTAC+TGG | - | chr3_4:38333762-38333781 | None:intergenic | 45.0% |
ACCAGATCCAAAAACACCTC+AGG | + | chr3_4:38333789-38333808 | Msa0499480:intron | 45.0% | |
!!! | TCCTGAGGTGTTTTTGGATC+TGG | - | chr3_4:38333793-38333812 | None:intergenic | 45.0% |
!! | TGAAGCTCCTGAGGTGTTTT+TGG | - | chr3_4:38333799-38333818 | None:intergenic | 45.0% |
AAAAACACCTCAGGAGCTTC+AGG | + | chr3_4:38333798-38333817 | Msa0499480:intron | 45.0% | |
AAAACACCTCAGGAGCTTCA+GGG | + | chr3_4:38333799-38333818 | Msa0499480:intron | 45.0% | |
GGATCTAGGTTAGATCCACA+TGG | - | chr3_4:38333839-38333858 | None:intergenic | 45.0% | |
GAACGGAGAAGAAGAGAGAA+GGG | - | chr3_4:38334000-38334019 | None:intergenic | 45.0% | |
TGAACGGAGAAGAAGAGAGA+AGG | - | chr3_4:38334001-38334020 | None:intergenic | 45.0% | |
!! | TGCCGGTTTCTGGAATGAAA+CGG | + | chr3_4:38334028-38334047 | Msa0499480:intron | 45.0% |
GACCGTTTCATTCCAGAAAC+CGG | - | chr3_4:38334033-38334052 | None:intergenic | 45.0% | |
!! | GGTTTCTGGAATGAAACGGT+CGG | + | chr3_4:38334032-38334051 | Msa0499480:intron | 45.0% |
GTCTTGAACTCCGATCTACA+TGG | + | chr3_4:38334115-38334134 | Msa0499480:intron | 45.0% | |
! | CGTGGTTACCTGAGTTGAAA+TGG | + | chr3_4:38334376-38334395 | Msa0499480:intron | 45.0% |
TATGAATTCGTCGCTCACAG+TGG | + | chr3_4:38334534-38334553 | Msa0499480:intron | 45.0% | |
TCTGGAGAGAGAATGTGGAA+TGG | + | chr3_4:38334740-38334759 | Msa0499480:intron | 45.0% | |
!! | TTGAGTTGGCGGTTAGAGAA+TGG | + | chr3_4:38334769-38334788 | Msa0499480:intron | 45.0% |
CATTGGGTCTCAAGTACACA+TGG | - | chr3_4:38334838-38334857 | None:intergenic | 45.0% | |
GAAATGACCAAAATGCCCCT+AGG | + | chr3_4:38335249-38335268 | Msa0499480:intron | 45.0% | |
!!! | TTTAGTCCCTAGGGGCATTT+TGG | - | chr3_4:38335259-38335278 | None:intergenic | 45.0% |
CAGAATTCTCCTTCCAACGA+GGG | - | chr3_4:38335883-38335902 | None:intergenic | 45.0% | |
TGGAAGGAGAATTCTGCTGT+TGG | + | chr3_4:38335887-38335906 | Msa0499480:intron | 45.0% | |
GGAAGGAGAATTCTGCTGTT+GGG | + | chr3_4:38335888-38335907 | Msa0499480:intron | 45.0% | |
TTTGCCATACCTGTTGCACA+TGG | - | chr3_4:38336389-38336408 | None:intergenic | 45.0% | |
! | TCCGATTTTTCGCTCTATGG+AGG | + | chr3_4:38336427-38336446 | Msa0499480:CDS | 45.0% |
GTGGAAATAAGCTATCGTGG+TGG | + | chr3_4:38336507-38336526 | Msa0499480:CDS | 45.0% | |
!! | TAAAAATAAAAAAATTAGTA+AGG | - | chr3_4:38331257-38331276 | None:intergenic | 5.0% |
!!! | ATAATAAAATTTGTTAAAAT+TGG | + | chr3_4:38335112-38335131 | Msa0499480:intron | 5.0% |
CGTGTTCCGCCAGTTAGTAA+TGG | + | chr3_4:38330466-38330485 | Msa0499480:CDS | 50.0% | |
! | TGGAATGTGATGGAGTGGGA+TGG | + | chr3_4:38331573-38331592 | Msa0499480:intron | 50.0% |
TTGGGGGGAATGAAAAGTGG+AGG | - | chr3_4:38331701-38331720 | None:intergenic | 50.0% | |
TGGATACACCCCAAATTGGG+GGG | - | chr3_4:38331716-38331735 | None:intergenic | 50.0% | |
CGGGAACCTTGAAGAAGGAA+AGG | + | chr3_4:38331790-38331809 | Msa0499480:intron | 50.0% | |
! | GTTTTTCTATGGGGGTCGCT+TGG | - | chr3_4:38331856-38331875 | None:intergenic | 50.0% |
ACCCTTGAGAATCGAGGTTC+GGG | + | chr3_4:38332252-38332271 | Msa0499480:intron | 50.0% | |
TCCCGAACCTCGATTCTCAA+GGG | - | chr3_4:38332256-38332275 | None:intergenic | 50.0% | |
!! | GCCTCAAGGGCATAGGATTT+TGG | + | chr3_4:38332600-38332619 | Msa0499480:intron | 50.0% |
!! | AGGGCCTATGTAACGGACAA+TGG | - | chr3_4:38332913-38332932 | None:intergenic | 50.0% |
GACCGTAGGATTGATCCATG+TGG | + | chr3_4:38333821-38333840 | Msa0499480:intron | 50.0% | |
CACTCTCCACCATAGGATCT+AGG | - | chr3_4:38333853-38333872 | None:intergenic | 50.0% | |
! | ATCCTATGGTGGAGAGTGCA+GGG | + | chr3_4:38333855-38333874 | Msa0499480:intron | 50.0% |
TATAGAGGACTGAACCGGAC+CGG | - | chr3_4:38333899-38333918 | None:intergenic | 50.0% | |
! | TCGCCGGAATCTGGAATTCA+CGG | - | chr3_4:38334095-38334114 | None:intergenic | 50.0% |
CATCGCAAAAGGCTCAACGA+AGG | - | chr3_4:38334340-38334359 | None:intergenic | 50.0% | |
TCGGTTCAACACCTACCAGA+AGG | - | chr3_4:38334449-38334468 | None:intergenic | 50.0% | |
GGCGGTTAGAGAATGGTGAT+TGG | + | chr3_4:38334776-38334795 | Msa0499480:intron | 50.0% | |
ACACGTGGTAGGCACTCATT+GGG | - | chr3_4:38334854-38334873 | None:intergenic | 50.0% | |
AACACGTGGTAGGCACTCAT+TGG | - | chr3_4:38334855-38334874 | None:intergenic | 50.0% | |
GCAGAATTCTCCTTCCAACG+AGG | - | chr3_4:38335884-38335903 | None:intergenic | 50.0% | |
ATCTACGTGCCATGTGCAAC+AGG | + | chr3_4:38336377-38336396 | Msa0499480:intron | 50.0% | |
CGCTCTATGGAGGACAAACA+TGG | + | chr3_4:38336437-38336456 | Msa0499480:CDS | 50.0% | |
GCAAGCACAGCCCAAAAGAG+TGG | - | chr3_4:38330800-38330819 | None:intergenic | 55.0% | |
ACCTGCGGGAACCTTGAAGA+AGG | + | chr3_4:38331785-38331804 | Msa0499480:intron | 55.0% | |
TCCTTCTTCAAGGTTCCCGC+AGG | - | chr3_4:38331789-38331808 | None:intergenic | 55.0% | |
CTCCCGAACCTCGATTCTCA+AGG | - | chr3_4:38332257-38332276 | None:intergenic | 55.0% | |
GAGAATCGAGGTTCGGGAGT+TGG | + | chr3_4:38332258-38332277 | Msa0499480:intron | 55.0% | |
!! | CGAGGTTCGGGAGTTGGTTT+TGG | + | chr3_4:38332264-38332283 | Msa0499480:intron | 55.0% |
! | GAGAAAGGCCTCAAGGGCAT+AGG | + | chr3_4:38332593-38332612 | Msa0499480:intron | 55.0% |
! | GCATGTGTCGGTGCTTGTGT+CGG | + | chr3_4:38332871-38332890 | Msa0499480:intron | 55.0% |
GGATCTGGTTGTTTGGGCCT+GGG | - | chr3_4:38333778-38333797 | None:intergenic | 55.0% | |
TGGATCTGGTTGTTTGGGCC+TGG | - | chr3_4:38333779-38333798 | None:intergenic | 55.0% | |
! | GATCCTATGGTGGAGAGTGC+AGG | + | chr3_4:38333854-38333873 | Msa0499480:intron | 55.0% |
! | TCCTATGGTGGAGAGTGCAG+GGG | + | chr3_4:38333856-38333875 | Msa0499480:intron | 55.0% |
!!! | GGAGTGGACCGGTTTTGAAC+CGG | + | chr3_4:38333877-38333896 | Msa0499480:intron | 55.0% |
! | GAACCGGACCGGTTCAAAAC+CGG | - | chr3_4:38333888-38333907 | None:intergenic | 55.0% |
! | CCGGAATCTGGAATTCACGG+CGG | - | chr3_4:38334092-38334111 | None:intergenic | 55.0% |
CCGCCGTGAATTCCAGATTC+CGG | + | chr3_4:38334089-38334108 | Msa0499480:intron | 55.0% | |
GTTCAAGACTCGCCGGAATC+TGG | - | chr3_4:38334104-38334123 | None:intergenic | 55.0% | |
GATCGGAGTTCAAGACTCGC+CGG | - | chr3_4:38334111-38334130 | None:intergenic | 55.0% | |
TGAGTGCCTACCACGTGTTC+TGG | + | chr3_4:38334856-38334875 | Msa0499480:intron | 55.0% | |
GCAAGTCCAGAACACGTGGT+AGG | - | chr3_4:38334865-38334884 | None:intergenic | 55.0% | |
CAAGGCAAGTCCAGAACACG+TGG | - | chr3_4:38334869-38334888 | None:intergenic | 55.0% | |
! | CACGTGTTCTGGACTTGCCT+TGG | + | chr3_4:38334867-38334886 | Msa0499480:intron | 55.0% |
CGTGCCATGTGCAACAGGTA+TGG | + | chr3_4:38336382-38336401 | Msa0499480:intron | 55.0% | |
TACGGTCCCTGAAGCTCCTG+AGG | - | chr3_4:38333808-38333827 | None:intergenic | 60.0% | |
TCAGGAGCTTCAGGGACCGT+AGG | + | chr3_4:38333807-38333826 | Msa0499480:intron | 60.0% | |
TCCCCTGCACTCTCCACCAT+AGG | - | chr3_4:38333860-38333879 | None:intergenic | 60.0% | |
!!! | GGACCGGTTTTGAACCGGTC+CGG | + | chr3_4:38333882-38333901 | Msa0499480:intron | 60.0% |
TTCCAACGAGGGCCCCGTTA+AGG | - | chr3_4:38335872-38335891 | None:intergenic | 60.0% | |
TTAACGGGGCCCTCGTTGGA+AGG | + | chr3_4:38335871-38335890 | Msa0499480:intron | 60.0% | |
! | TGGTGGAGAGTGCAGGGGAG+TGG | + | chr3_4:38333861-38333880 | Msa0499480:intron | 65.0% |
! | GAGAGTGCAGGGGAGTGGAC+CGG | + | chr3_4:38333866-38333885 | Msa0499480:intron | 65.0% |
CACCTTAACGGGGCCCTCGT+TGG | + | chr3_4:38335867-38335886 | Msa0499480:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 38330023 | 38336553 | 38330023 | ID=Msa0499480;Name=Msa0499480 |
chr3_4 | mRNA | 38330023 | 38336553 | 38330023 | ID=Msa0499480-mRNA-1;Parent=Msa0499480;Name=Msa0499480-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.66|0|1|0.33|0.25|4|0|279 |
chr3_4 | exon | 38330023 | 38330236 | 38330023 | ID=Msa0499480-mRNA-1:exon:7886;Parent=Msa0499480-mRNA-1 |
chr3_4 | exon | 38330462 | 38330695 | 38330462 | ID=Msa0499480-mRNA-1:exon:7887;Parent=Msa0499480-mRNA-1 |
chr3_4 | exon | 38330702 | 38330935 | 38330702 | ID=Msa0499480-mRNA-1:exon:7888;Parent=Msa0499480-mRNA-1 |
chr3_4 | exon | 38336399 | 38336553 | 38336399 | ID=Msa0499480-mRNA-1:exon:7889;Parent=Msa0499480-mRNA-1 |
chr3_4 | CDS | 38330023 | 38330236 | 38330023 | ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1 |
chr3_4 | CDS | 38330462 | 38330695 | 38330462 | ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1 |
chr3_4 | CDS | 38330702 | 38330935 | 38330702 | ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1 |
chr3_4 | CDS | 38336399 | 38336553 | 38336399 | ID=Msa0499480-mRNA-1:cds;Parent=Msa0499480-mRNA-1 |
Gene Sequence |
Protein sequence |