Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407780 | XP_024634879.1 | 74.797 | 246 | 42 | 4 | 1 | 229 | 1 | 243 | 2.68e-121 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407780 | A0A396IRP0 | 66.245 | 237 | 59 | 7 | 14 | 230 | 1 | 236 | 9.82e-94 | 283 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0407780 | 0.822112 | 2.818943e-53 | -8.615850e-47 |
| Msa0007080 | Msa0407780 | 0.801482 | 8.819832e-49 | -8.615850e-47 |
| Msa0012550 | Msa0407780 | 0.810001 | 1.431616e-50 | -8.615850e-47 |
| Msa0017510 | Msa0407780 | 0.822099 | 2.838844e-53 | -8.615850e-47 |
| Msa0029910 | Msa0407780 | 0.808943 | 2.415223e-50 | -8.615850e-47 |
| Msa0034270 | Msa0407780 | 0.801745 | 7.790011e-49 | -8.615850e-47 |
| Msa0051790 | Msa0407780 | 0.823333 | 1.465842e-53 | -8.615850e-47 |
| Msa0094850 | Msa0407780 | 0.812268 | 4.617368e-51 | -8.615850e-47 |
| Msa0101810 | Msa0407780 | -0.801265 | 9.769496e-49 | -8.615850e-47 |
| Msa0112750 | Msa0407780 | 0.806205 | 9.212428e-50 | -8.615850e-47 |
| Msa0140780 | Msa0407780 | 0.807872 | 4.088235e-50 | -8.615850e-47 |
| Msa0142200 | Msa0407780 | 0.850792 | 1.350127e-60 | -8.615850e-47 |
| Msa0152430 | Msa0407780 | 0.816046 | 6.766733e-52 | -8.615850e-47 |
| Msa0157290 | Msa0407780 | 0.822272 | 2.588332e-53 | -8.615850e-47 |
| Msa0165510 | Msa0407780 | 0.810018 | 1.419804e-50 | -8.615850e-47 |
| Msa0191250 | Msa0407780 | 0.811727 | 6.058396e-51 | -8.615850e-47 |
| Msa0197930 | Msa0407780 | 0.809085 | 2.252701e-50 | -8.615850e-47 |
| Msa0205840 | Msa0407780 | 0.800578 | 1.349694e-48 | -8.615850e-47 |
| Msa0205850 | Msa0407780 | 0.809292 | 2.033366e-50 | -8.615850e-47 |
| Msa0225320 | Msa0407780 | 0.800294 | 1.542065e-48 | -8.615850e-47 |
| Msa0227470 | Msa0407780 | 0.863143 | 3.071924e-64 | -8.615850e-47 |
| Msa0233340 | Msa0407780 | 0.800403 | 1.464780e-48 | -8.615850e-47 |
| Msa0388960 | Msa0407780 | 0.808340 | 3.249409e-50 | -8.615850e-47 |
| Msa0407780 | Msa0407810 | 0.818448 | 1.949577e-52 | -8.615850e-47 |
| Msa0407780 | Msa0407870 | 0.880871 | 3.840508e-70 | -8.615850e-47 |
| Msa0407780 | Msa0407890 | 0.870701 | 1.196264e-66 | -8.615850e-47 |
| Msa0407780 | Msa0407900 | 0.805337 | 1.401607e-49 | -8.615850e-47 |
| Msa0407780 | Msa0407910 | 0.815576 | 8.613416e-52 | -8.615850e-47 |
| Msa0407780 | Msa0407920 | 0.831177 | 1.935418e-55 | -8.615850e-47 |
| Msa0407780 | Msa0410650 | 0.804381 | 2.220415e-49 | -8.615850e-47 |
| Msa0407780 | Msa0452870 | 0.860278 | 2.309550e-63 | -8.615850e-47 |
| Msa0407780 | Msa0452920 | 0.850371 | 1.773348e-60 | -8.615850e-47 |
| Msa0407780 | Msa0452940 | 0.814400 | 1.571099e-51 | -8.615850e-47 |
| Msa0407780 | Msa0484780 | 0.826160 | 3.158613e-54 | -8.615850e-47 |
| Msa0407780 | Msa0499480 | 0.838526 | 2.729408e-57 | -8.615850e-47 |
| Msa0407780 | Msa0507680 | 0.804643 | 1.957607e-49 | -8.615850e-47 |
| Msa0407780 | Msa0509610 | 0.808061 | 3.727264e-50 | -8.615850e-47 |
| Msa0407780 | Msa0512900 | 0.806786 | 6.946786e-50 | -8.615850e-47 |
| Msa0407780 | Msa0527790 | 0.812228 | 4.712041e-51 | -8.615850e-47 |
| Msa0407780 | Msa0534590 | 0.800923 | 1.147439e-48 | -8.615850e-47 |
| Msa0407780 | Msa0546680 | 0.801489 | 8.788655e-49 | -8.615850e-47 |
| Msa0407780 | Msa0626280 | 0.807328 | 5.332993e-50 | -8.615850e-47 |
| Msa0407780 | Msa0641360 | 0.800254 | 1.571075e-48 | -8.615850e-47 |
| Msa0407780 | Msa0657970 | 0.814271 | 1.677162e-51 | -8.615850e-47 |
| Msa0407780 | Msa0662240 | 0.803487 | 3.405787e-49 | -8.615850e-47 |
| Msa0407780 | Msa0682330 | 0.800100 | 1.688893e-48 | -8.615850e-47 |
| Msa0407780 | Msa0682550 | 0.821308 | 4.326234e-53 | -8.615850e-47 |
| Msa0407780 | Msa0819680 | 0.811344 | 7.337440e-51 | -8.615850e-47 |
| Msa0407780 | Msa0824660 | 0.806676 | 7.325924e-50 | -8.615850e-47 |
| Msa0407780 | Msa0829620 | 0.802579 | 5.246813e-49 | -8.615850e-47 |
| Msa0407780 | Msa0843400 | 0.801774 | 7.683114e-49 | -8.615850e-47 |
| Msa0407780 | Msa0858840 | 0.809798 | 1.583430e-50 | -8.615850e-47 |
| Msa0407780 | Msa0867890 | 0.814932 | 1.197587e-51 | -8.615850e-47 |
| Msa0407780 | Msa0869450 | 0.801725 | 7.864414e-49 | -8.615850e-47 |
| Msa0407780 | Msa0870530 | 0.812189 | 4.804624e-51 | -8.615850e-47 |
| Msa0407780 | Msa0880140 | 0.820624 | 6.215203e-53 | -8.615850e-47 |
| Msa0407780 | Msa0903700 | 0.809572 | 1.770635e-50 | -8.615850e-47 |
| Msa0407780 | Msa0909120 | 0.808084 | 3.684464e-50 | -8.615850e-47 |
| Msa0407780 | Msa0954130 | 0.800795 | 1.218506e-48 | -8.615850e-47 |
| Msa0407780 | Msa0973150 | 0.804385 | 2.215500e-49 | -8.615850e-47 |
| Msa0407780 | Msa0985950 | 0.801766 | 7.711115e-49 | -8.615850e-47 |
| Msa0407780 | Msa1007270 | 0.817470 | 3.243825e-52 | -8.615850e-47 |
| Msa0407780 | Msa1080160 | 0.804295 | 2.313745e-49 | -8.615850e-47 |
| Msa0407780 | Msa1082500 | 0.817314 | 3.515757e-52 | -8.615850e-47 |
| Msa0407780 | Msa1085200 | 0.801732 | 7.838832e-49 | -8.615850e-47 |
| Msa0407780 | Msa1151910 | 0.801036 | 1.088274e-48 | -8.615850e-47 |
| Msa0407780 | Msa1172670 | 0.805690 | 1.182003e-49 | -8.615850e-47 |
| Msa0407780 | Msa1278840 | 0.817650 | 2.953971e-52 | -8.615850e-47 |
| Msa0407780 | Msa1289280 | 0.808828 | 2.557106e-50 | -8.615850e-47 |
| Msa0407780 | Msa1313150 | 0.809327 | 1.998904e-50 | -8.615850e-47 |
| Msa0407780 | Msa1318240 | 0.808358 | 3.221914e-50 | -8.615850e-47 |
| Msa0407780 | Msa1409870 | 0.802692 | 4.972914e-49 | -8.615850e-47 |
| Msa0407780 | Msa1410210 | 0.800998 | 1.107553e-48 | -8.615850e-47 |
| Msa0407780 | Msa1423880 | 0.807190 | 5.703740e-50 | -8.615850e-47 |
| Msa0407780 | Msa1438250 | 0.817116 | 3.896671e-52 | -8.615850e-47 |
| Msa0407780 | Msa1453250 | 0.801259 | 9.796329e-49 | -8.615850e-47 |
| Msa0243100 | Msa0407780 | 0.838382 | 2.972611e-57 | -8.615850e-47 |
| Msa0244860 | Msa0407780 | 0.800191 | 1.618378e-48 | -8.615850e-47 |
| Msa0248970 | Msa0407780 | 0.822828 | 1.922351e-53 | -8.615850e-47 |
| Msa0262510 | Msa0407780 | 0.805520 | 1.282867e-49 | -8.615850e-47 |
| Msa0276920 | Msa0407780 | 0.817483 | 3.221120e-52 | -8.615850e-47 |
| Msa0283450 | Msa0407780 | 0.803364 | 3.610849e-49 | -8.615850e-47 |
| Msa0287650 | Msa0407780 | 0.818739 | 1.674893e-52 | -8.615850e-47 |
| Msa0288190 | Msa0407780 | 0.809037 | 2.306540e-50 | -8.615850e-47 |
| Msa0290010 | Msa0407780 | 0.806211 | 9.181959e-50 | -8.615850e-47 |
| Msa0311690 | Msa0407780 | 0.814905 | 1.214147e-51 | -8.615850e-47 |
| Msa0332000 | Msa0407780 | 0.802495 | 5.459581e-49 | -8.615850e-47 |
| Msa0333930 | Msa0407780 | 0.805094 | 1.575813e-49 | -8.615850e-47 |
| Msa0338110 | Msa0407780 | 0.810309 | 1.228806e-50 | -8.615850e-47 |
| Msa0360540 | Msa0407780 | 0.832510 | 9.072216e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407780 | MtrunA17_Chr3g0098291 | 66.245 | 237 | 59 | 7 | 14 | 230 | 1 | 236 | 1.89e-97 | 283 |
| Msa0407780 | MtrunA17_Chr3g0098491 | 74.834 | 151 | 22 | 2 | 44 | 178 | 1 | 151 | 1.60e-76 | 227 |
| Msa0407780 | MtrunA17_Chr3g0098521 | 72.549 | 153 | 26 | 2 | 44 | 180 | 1 | 153 | 9.77e-76 | 226 |
| Msa0407780 | MtrunA17_Chr3g0098541 | 48.404 | 188 | 82 | 4 | 56 | 229 | 5 | 191 | 2.31e-51 | 170 |
| Msa0407780 | MtrunA17_Chr3g0102001 | 44.749 | 219 | 93 | 5 | 38 | 229 | 21 | 238 | 5.03e-51 | 176 |
| Msa0407780 | MtrunA17_Chr5g0439061 | 40.930 | 215 | 100 | 5 | 41 | 229 | 25 | 238 | 6.50e-41 | 148 |
| Msa0407780 | MtrunA17_Chr5g0439071 | 39.423 | 208 | 104 | 4 | 41 | 227 | 25 | 231 | 1.36e-39 | 143 |
| Msa0407780 | MtrunA17_Chr5g0439021 | 40.506 | 158 | 74 | 3 | 41 | 178 | 25 | 182 | 3.15e-31 | 113 |
| Msa0407780 | MtrunA17_Chr2g0286601 | 32.843 | 204 | 116 | 5 | 44 | 229 | 14 | 214 | 7.35e-22 | 93.6 |
| Msa0407780 | MtrunA17_Chr2g0286571 | 32.195 | 205 | 118 | 5 | 44 | 230 | 14 | 215 | 5.37e-21 | 89.4 |
| Msa0407780 | MtrunA17_Chr2g0286551 | 32.673 | 202 | 119 | 4 | 44 | 229 | 14 | 214 | 2.23e-20 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 42 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGCTGAATCATAGAATT+AGG | 0.302724 | 3_2:+46693010 | None:intergenic |
| ATAGCAAGATTGAGATCATT+TGG | 0.331887 | 3_2:+46692413 | None:intergenic |
| CTGTGCTTGCACGCCATAAA+AGG | 0.343353 | 3_2:-46692463 | Msa0407780:CDS |
| GAATGAAAATAAGAAGAATA+AGG | 0.349218 | 3_2:+46693097 | None:intergenic |
| TGAAACTTAATCTTAGAGTT+AGG | 0.353782 | 3_2:+46693049 | None:intergenic |
| TAAGTTTCAAACTTCCGAAA+TGG | 0.365986 | 3_2:-46693074 | Msa0407780:exon |
| CTTAGAGTTAGGATCCATTT+CGG | 0.385934 | 3_2:+46693060 | None:intergenic |
| AAGTGACACAAACACATATA+TGG | 0.400607 | 3_2:-46692059 | Msa0407780:exon |
| CATAGAATTAGGATCCATTT+CGG | 0.411404 | 3_2:+46693021 | None:intergenic |
| TAAGTTTCAACCCACCGAAA+TGG | 0.417432 | 3_2:-46693035 | Msa0407780:CDS |
| TAGCAAGATTGAGATCATTT+GGG | 0.422742 | 3_2:+46692414 | None:intergenic |
| CTTCACCTTGCAGCATATAG+AGG | 0.427598 | 3_2:-46692584 | Msa0407780:CDS |
| CTCTTGAAATTCTTGCTACT+AGG | 0.427955 | 3_2:-46692145 | Msa0407780:CDS |
| AAGAGGAGTATCACCTCTTT+CGG | 0.455469 | 3_2:+46692604 | None:intergenic |
| AATAAGGATCAATGAGAGAT+GGG | 0.462738 | 3_2:+46693113 | None:intergenic |
| ACCGAACATTTCTCTATGAA+TGG | 0.471652 | 3_2:+46692358 | None:intergenic |
| GAATAAGGATCAATGAGAGA+TGG | 0.481962 | 3_2:+46693112 | None:intergenic |
| CGTGTTCCGCGAGTGGGTAA+TGG | 0.493978 | 3_2:-46692806 | Msa0407780:CDS |
| GTGGGTAATGGAAGACGATT+GGG | 0.496127 | 3_2:-46692794 | Msa0407780:CDS |
| GCCATTCATAGAGAAATGTT+CGG | 0.497959 | 3_2:-46692359 | Msa0407780:intron |
| GATCAATGAGAGATGGGTAG+TGG | 0.515618 | 3_2:+46693119 | None:intergenic |
| AGCTGCCGTGTTCCGCGAGT+GGG | 0.517409 | 3_2:-46692812 | Msa0407780:CDS |
| AGTGGGTAATGGAAGACGAT+TGG | 0.517975 | 3_2:-46692795 | Msa0407780:CDS |
| ATGAATGGCAACGTGAAGAA+TGG | 0.524484 | 3_2:+46692373 | None:intergenic |
| TTTGAAATGAAGACCGAAAG+AGG | 0.525545 | 3_2:-46692617 | Msa0407780:CDS |
| GTACCATCTTGAAAGTCATA+AGG | 0.546594 | 3_2:+46692968 | None:intergenic |
| GTACCTTATGACTTTCAAGA+TGG | 0.546774 | 3_2:-46692971 | Msa0407780:intron |
| AGTATGTGTAAATGTATCGT+TGG | 0.546925 | 3_2:-46692554 | Msa0407780:CDS |
| CGCTCTACAGAGGACGAACA+TGG | 0.548818 | 3_2:-46692176 | Msa0407780:CDS |
| CTATATGCTGCAAGGTGAAG+AGG | 0.554034 | 3_2:+46692587 | None:intergenic |
| GAATTAGGATCCATTTCGGT+GGG | 0.559223 | 3_2:+46693025 | None:intergenic |
| AAATTGATGTAGGTAAAGAA+AGG | 0.583759 | 3_2:+46692439 | None:intergenic |
| TGAATCCTCTATATGCTGCA+AGG | 0.593278 | 3_2:+46692579 | None:intergenic |
| CATTACCCACTCGCGGAACA+CGG | 0.595111 | 3_2:+46692807 | None:intergenic |
| CAATCTTGCTATGAATAACG+AGG | 0.598611 | 3_2:-46692402 | Msa0407780:CDS |
| AGAATTAGGATCCATTTCGG+TGG | 0.599853 | 3_2:+46693024 | None:intergenic |
| TAGCTGCCGTGTTCCGCGAG+TGG | 0.600863 | 3_2:-46692813 | Msa0407780:CDS |
| CTAGTAGCAAGAATTTCAAG+AGG | 0.608826 | 3_2:+46692146 | None:intergenic |
| GTAAAGCATAATGATCAAAG+TGG | 0.624361 | 3_2:-46692641 | Msa0407780:CDS |
| CGTCTTCCATTACCCACTCG+CGG | 0.694968 | 3_2:+46692800 | None:intergenic |
| AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_2:-46692714 | Msa0407780:CDS |
| AATCTTGCTATGAATAACGA+GGG | 0.709353 | 3_2:-46692401 | Msa0407780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTATCAAGTTT+TGG | + | chr3_2:46692884-46692903 | None:intergenic | 10.0% |
| !!! | AAATATTTTTTATCAAGTTT+TGG | + | chr3_2:46692884-46692903 | None:intergenic | 10.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | + | chr3_2:46692298-46692317 | None:intergenic | 15.0% |
| !!! | TTTTCACAAGATAAAAATAA+AGG | - | chr3_2:46692435-46692454 | Msa0407780:CDS | 15.0% |
| !! | TTTCACAAGATAAAAATAAA+GGG | - | chr3_2:46692436-46692455 | Msa0407780:CDS | 15.0% |
| !! | ATTAAAGTAAACAATGAAAA+GGG | - | chr3_2:46692667-46692686 | Msa0407780:CDS | 15.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | + | chr3_2:46692298-46692317 | None:intergenic | 15.0% |
| !!! | TTTTCACAAGATAAAAATAA+AGG | - | chr3_2:46692435-46692454 | Msa0407780:CDS | 15.0% |
| !! | TTTCACAAGATAAAAATAAA+GGG | - | chr3_2:46692436-46692455 | Msa0407780:CDS | 15.0% |
| !! | ATTAAAGTAAACAATGAAAA+GGG | - | chr3_2:46692667-46692686 | Msa0407780:CDS | 15.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | + | chr3_2:46692079-46692098 | None:intergenic | 20.0% |
| !! | GATTAAAGTAAACAATGAAA+AGG | - | chr3_2:46692666-46692685 | Msa0407780:CDS | 20.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | + | chr3_2:46692079-46692098 | None:intergenic | 20.0% |
| !! | GATTAAAGTAAACAATGAAA+AGG | - | chr3_2:46692666-46692685 | Msa0407780:CDS | 20.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | + | chr3_2:46692127-46692146 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | - | chr3_2:46692232-46692251 | Msa0407780:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | + | chr3_2:46692295-46692314 | None:intergenic | 25.0% |
| ! | AAGATAAAAATAAAGGGAAG+AGG | - | chr3_2:46692442-46692461 | Msa0407780:CDS | 25.0% |
| ! | AAATGTATCGTTGGAAAAAA+TGG | - | chr3_2:46692628-46692647 | Msa0407780:CDS | 25.0% |
| ! | AAATTGATGTAGGTAAAGAA+AGG | + | chr3_2:46692737-46692756 | None:intergenic | 25.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | + | chr3_2:46692127-46692146 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | - | chr3_2:46692232-46692251 | Msa0407780:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | + | chr3_2:46692295-46692314 | None:intergenic | 25.0% |
| ! | AAGATAAAAATAAAGGGAAG+AGG | - | chr3_2:46692442-46692461 | Msa0407780:CDS | 25.0% |
| ! | AAATGTATCGTTGGAAAAAA+TGG | - | chr3_2:46692628-46692647 | Msa0407780:CDS | 25.0% |
| ! | AAATTGATGTAGGTAAAGAA+AGG | + | chr3_2:46692737-46692756 | None:intergenic | 25.0% |
| AATAAGGATCAATGAGAGAT+GGG | + | chr3_2:46692063-46692082 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | - | chr3_2:46692099-46692118 | Msa0407780:CDS | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | + | chr3_2:46692155-46692174 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | + | chr3_2:46692184-46692203 | None:intergenic | 30.0% |
| TGAAGAGCCTGATAAATATA+AGG | + | chr3_2:46692242-46692261 | None:intergenic | 30.0% | |
| GTAAAGCATAATGATCAAAG+TGG | - | chr3_2:46692532-46692551 | Msa0407780:CDS | 30.0% | |
| AGTATGTGTAAATGTATCGT+TGG | - | chr3_2:46692619-46692638 | Msa0407780:CDS | 30.0% | |
| CATTTGGGAAAAATTGATGT+AGG | + | chr3_2:46692747-46692766 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | + | chr3_2:46692762-46692781 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | + | chr3_2:46692763-46692782 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | - | chr3_2:46692772-46692791 | Msa0407780:CDS | 30.0% |
| ! | TAAAGAATTTTCTTCCACCA+TGG | + | chr3_2:46693087-46693106 | None:intergenic | 30.0% |
| AAGTGACACAAACACATATA+TGG | - | chr3_2:46693114-46693133 | Msa0407780:five_prime_UTR | 30.0% | |
| AATAAGGATCAATGAGAGAT+GGG | + | chr3_2:46692063-46692082 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | - | chr3_2:46692099-46692118 | Msa0407780:CDS | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | + | chr3_2:46692155-46692174 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | + | chr3_2:46692184-46692203 | None:intergenic | 30.0% |
| TGAAGAGCCTGATAAATATA+AGG | + | chr3_2:46692242-46692261 | None:intergenic | 30.0% | |
| GTAAAGCATAATGATCAAAG+TGG | - | chr3_2:46692532-46692551 | Msa0407780:CDS | 30.0% | |
| AGTATGTGTAAATGTATCGT+TGG | - | chr3_2:46692619-46692638 | Msa0407780:CDS | 30.0% | |
| CATTTGGGAAAAATTGATGT+AGG | + | chr3_2:46692747-46692766 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | + | chr3_2:46692762-46692781 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | + | chr3_2:46692763-46692782 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | - | chr3_2:46692772-46692791 | Msa0407780:CDS | 30.0% |
| ! | TAAAGAATTTTCTTCCACCA+TGG | + | chr3_2:46693087-46693106 | None:intergenic | 30.0% |
| AAGTGACACAAACACATATA+TGG | - | chr3_2:46693114-46693133 | Msa0407780:five_prime_UTR | 30.0% | |
| GAATAAGGATCAATGAGAGA+TGG | + | chr3_2:46692064-46692083 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | + | chr3_2:46692116-46692135 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | + | chr3_2:46692166-46692185 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | - | chr3_2:46692202-46692221 | Msa0407780:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | + | chr3_2:46692208-46692227 | None:intergenic | 35.0% | |
| ! | AAGTTTTACTCTCTCTTCGT+CGG | + | chr3_2:46692497-46692516 | None:intergenic | 35.0% |
| ! | TTTGAAATGAAGACCGAAAG+AGG | - | chr3_2:46692556-46692575 | Msa0407780:CDS | 35.0% |
| TCGTTGGAAAAAATGGTGAA+AGG | - | chr3_2:46692635-46692654 | Msa0407780:CDS | 35.0% | |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | + | chr3_2:46692726-46692745 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | - | chr3_2:46692771-46692790 | Msa0407780:CDS | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | - | chr3_2:46692814-46692833 | Msa0407780:intron | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | + | chr3_2:46692818-46692837 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | - | chr3_2:46692937-46692956 | Msa0407780:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | + | chr3_2:46693030-46693049 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | - | chr3_2:46693028-46693047 | Msa0407780:CDS | 35.0% | |
| GTAGTAAAAATCAGCTACCA+TGG | - | chr3_2:46693067-46693086 | Msa0407780:exon | 35.0% | |
| GAATAAGGATCAATGAGAGA+TGG | + | chr3_2:46692064-46692083 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | + | chr3_2:46692116-46692135 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | + | chr3_2:46692166-46692185 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | - | chr3_2:46692202-46692221 | Msa0407780:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | + | chr3_2:46692208-46692227 | None:intergenic | 35.0% | |
| ! | AAGTTTTACTCTCTCTTCGT+CGG | + | chr3_2:46692497-46692516 | None:intergenic | 35.0% |
| ! | TTTGAAATGAAGACCGAAAG+AGG | - | chr3_2:46692556-46692575 | Msa0407780:CDS | 35.0% |
| TCGTTGGAAAAAATGGTGAA+AGG | - | chr3_2:46692635-46692654 | Msa0407780:CDS | 35.0% | |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | + | chr3_2:46692726-46692745 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | - | chr3_2:46692771-46692790 | Msa0407780:CDS | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | - | chr3_2:46692814-46692833 | Msa0407780:intron | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | + | chr3_2:46692818-46692837 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | - | chr3_2:46692937-46692956 | Msa0407780:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | + | chr3_2:46693030-46693049 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | - | chr3_2:46693028-46693047 | Msa0407780:CDS | 35.0% | |
| GTAGTAAAAATCAGCTACCA+TGG | - | chr3_2:46693067-46693086 | Msa0407780:exon | 35.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | - | chr3_2:46692138-46692157 | Msa0407780:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | + | chr3_2:46692151-46692170 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | + | chr3_2:46692152-46692171 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | - | chr3_2:46692459-46692478 | Msa0407780:CDS | 40.0% | |
| !! | AAGAGGAGTATCACCTCTTT+CGG | + | chr3_2:46692572-46692591 | None:intergenic | 40.0% |
| TGAATCCTCTATATGCTGCA+AGG | + | chr3_2:46692597-46692616 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | + | chr3_2:46692803-46692822 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | - | chr3_2:46692942-46692961 | Msa0407780:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | - | chr3_2:46692987-46693006 | Msa0407780:CDS | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | + | chr3_2:46692991-46693010 | None:intergenic | 40.0% | |
| GTAAAAATCAGCTACCATGG+TGG | - | chr3_2:46693070-46693089 | Msa0407780:exon | 40.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | - | chr3_2:46692138-46692157 | Msa0407780:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | + | chr3_2:46692151-46692170 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | + | chr3_2:46692152-46692171 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | - | chr3_2:46692459-46692478 | Msa0407780:CDS | 40.0% | |
| !! | AAGAGGAGTATCACCTCTTT+CGG | + | chr3_2:46692572-46692591 | None:intergenic | 40.0% |
| TGAATCCTCTATATGCTGCA+AGG | + | chr3_2:46692597-46692616 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | + | chr3_2:46692803-46692822 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | - | chr3_2:46692942-46692961 | Msa0407780:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | - | chr3_2:46692987-46693006 | Msa0407780:CDS | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | + | chr3_2:46692991-46693010 | None:intergenic | 40.0% | |
| GTAAAAATCAGCTACCATGG+TGG | - | chr3_2:46693070-46693089 | Msa0407780:exon | 40.0% | |
| GATCAATGAGAGATGGGTAG+TGG | + | chr3_2:46692057-46692076 | None:intergenic | 45.0% | |
| !! | AGTGGGTAATGGAAGACGAT+TGG | - | chr3_2:46692378-46692397 | Msa0407780:CDS | 45.0% |
| !! | GTGGGTAATGGAAGACGATT+GGG | - | chr3_2:46692379-46692398 | Msa0407780:CDS | 45.0% |
| CTATATGCTGCAAGGTGAAG+AGG | + | chr3_2:46692589-46692608 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | - | chr3_2:46692589-46692608 | Msa0407780:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+TGG | + | chr3_2:46692700-46692719 | None:intergenic | 45.0% | |
| GATCAATGAGAGATGGGTAG+TGG | + | chr3_2:46692057-46692076 | None:intergenic | 45.0% | |
| !! | AGTGGGTAATGGAAGACGAT+TGG | - | chr3_2:46692378-46692397 | Msa0407780:CDS | 45.0% |
| !! | GTGGGTAATGGAAGACGATT+GGG | - | chr3_2:46692379-46692398 | Msa0407780:CDS | 45.0% |
| CTATATGCTGCAAGGTGAAG+AGG | + | chr3_2:46692589-46692608 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | - | chr3_2:46692589-46692608 | Msa0407780:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+TGG | + | chr3_2:46692700-46692719 | None:intergenic | 45.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | - | chr3_2:46692710-46692729 | Msa0407780:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | - | chr3_2:46692710-46692729 | Msa0407780:CDS | 50.0% | |
| CATTACCCACTCGCGGAACA+CGG | + | chr3_2:46692369-46692388 | None:intergenic | 55.0% | |
| CGTCTTCCATTACCCACTCG+CGG | + | chr3_2:46692376-46692395 | None:intergenic | 55.0% | |
| CGCTCTACAGAGGACGAACA+TGG | - | chr3_2:46692997-46693016 | Msa0407780:CDS | 55.0% | |
| CATTACCCACTCGCGGAACA+CGG | + | chr3_2:46692369-46692388 | None:intergenic | 55.0% | |
| CGTCTTCCATTACCCACTCG+CGG | + | chr3_2:46692376-46692395 | None:intergenic | 55.0% | |
| CGCTCTACAGAGGACGAACA+TGG | - | chr3_2:46692997-46693016 | Msa0407780:CDS | 55.0% | |
| CGTGTTCCGCGAGTGGGTAA+TGG | - | chr3_2:46692367-46692386 | Msa0407780:CDS | 60.0% | |
| CGTGTTCCGCGAGTGGGTAA+TGG | - | chr3_2:46692367-46692386 | Msa0407780:CDS | 60.0% | |
| TAGCTGCCGTGTTCCGCGAG+TGG | - | chr3_2:46692360-46692379 | Msa0407780:CDS | 65.0% | |
| AGCTGCCGTGTTCCGCGAGT+GGG | - | chr3_2:46692361-46692380 | Msa0407780:CDS | 65.0% | |
| TAGCTGCCGTGTTCCGCGAG+TGG | - | chr3_2:46692360-46692379 | Msa0407780:CDS | 65.0% | |
| AGCTGCCGTGTTCCGCGAGT+GGG | - | chr3_2:46692361-46692380 | Msa0407780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 46692054 | 46693141 | 46692054 | ID=Msa0407780;Name=Msa0407780 |
| chr3_2 | mRNA | 46692054 | 46693141 | 46692054 | ID=Msa0407780-mRNA-1;Parent=Msa0407780;Name=Msa0407780-mRNA-1;_AED=0.14;_eAED=0.14;_QI=64|0.5|0.4|1|0.25|0.4|5|22|230 |
| chr3_2 | exon | 46692054 | 46692236 | 46692054 | ID=Msa0407780-mRNA-1:exon:9018;Parent=Msa0407780-mRNA-1 |
| chr3_2 | exon | 46692360 | 46692507 | 46692360 | ID=Msa0407780-mRNA-1:exon:9017;Parent=Msa0407780-mRNA-1 |
| chr3_2 | exon | 46692523 | 46692733 | 46692523 | ID=Msa0407780-mRNA-1:exon:9016;Parent=Msa0407780-mRNA-1 |
| chr3_2 | exon | 46692766 | 46692832 | 46692766 | ID=Msa0407780-mRNA-1:exon:9015;Parent=Msa0407780-mRNA-1 |
| chr3_2 | exon | 46692972 | 46693141 | 46692972 | ID=Msa0407780-mRNA-1:exon:9014;Parent=Msa0407780-mRNA-1 |
| chr3_2 | five_prime_UTR | 46693078 | 46693141 | 46693078 | ID=Msa0407780-mRNA-1:five_prime_utr;Parent=Msa0407780-mRNA-1 |
| chr3_2 | CDS | 46692972 | 46693077 | 46692972 | ID=Msa0407780-mRNA-1:cds;Parent=Msa0407780-mRNA-1 |
| chr3_2 | CDS | 46692766 | 46692832 | 46692766 | ID=Msa0407780-mRNA-1:cds;Parent=Msa0407780-mRNA-1 |
| chr3_2 | CDS | 46692523 | 46692733 | 46692523 | ID=Msa0407780-mRNA-1:cds;Parent=Msa0407780-mRNA-1 |
| chr3_2 | CDS | 46692360 | 46692507 | 46692360 | ID=Msa0407780-mRNA-1:cds;Parent=Msa0407780-mRNA-1 |
| chr3_2 | CDS | 46692076 | 46692236 | 46692076 | ID=Msa0407780-mRNA-1:cds;Parent=Msa0407780-mRNA-1 |
| chr3_2 | three_prime_UTR | 46692054 | 46692075 | 46692054 | ID=Msa0407780-mRNA-1:three_prime_utr;Parent=Msa0407780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
