Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407890 | XP_024634879.1 | 81.707 | 246 | 41 | 2 | 1 | 245 | 1 | 243 | 9.15e-142 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407890 | G7IXJ0 | 86.740 | 181 | 24 | 0 | 14 | 194 | 1 | 181 | 7.06e-115 | 337 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0407890 | 0.810904 | 9.139358e-51 | -8.615850e-47 |
| Msa0012440 | Msa0407890 | 0.820978 | 5.154066e-53 | -8.615850e-47 |
| Msa0012550 | Msa0407890 | 0.800710 | 1.268490e-48 | -8.615850e-47 |
| Msa0017510 | Msa0407890 | 0.804052 | 2.598814e-49 | -8.615850e-47 |
| Msa0036430 | Msa0407890 | 0.801838 | 7.453459e-49 | -8.615850e-47 |
| Msa0057240 | Msa0407890 | 0.815339 | 9.726400e-52 | -8.615850e-47 |
| Msa0130570 | Msa0407890 | 0.802290 | 6.017882e-49 | -8.615850e-47 |
| Msa0142200 | Msa0407890 | 0.820584 | 6.348320e-53 | -8.615850e-47 |
| Msa0149560 | Msa0407890 | 0.820824 | 5.591946e-53 | -8.615850e-47 |
| Msa0157290 | Msa0407890 | 0.804714 | 1.892228e-49 | -8.615850e-47 |
| Msa0197930 | Msa0407890 | 0.808114 | 3.631759e-50 | -8.615850e-47 |
| Msa0219190 | Msa0407890 | 0.801165 | 1.024016e-48 | -8.615850e-47 |
| Msa0227470 | Msa0407890 | 0.831365 | 1.739429e-55 | -8.615850e-47 |
| Msa0407780 | Msa0407890 | 0.870701 | 1.196264e-66 | -8.615850e-47 |
| Msa0407810 | Msa0407890 | 0.820681 | 6.031614e-53 | -8.615850e-47 |
| Msa0407870 | Msa0407890 | 0.881950 | 1.566522e-70 | -8.615850e-47 |
| Msa0407890 | Msa0407920 | 0.822708 | 2.049781e-53 | -8.615850e-47 |
| Msa0407890 | Msa0438590 | 0.814183 | 1.754044e-51 | -8.615850e-47 |
| Msa0407890 | Msa0452870 | 0.811990 | 5.309488e-51 | -8.615850e-47 |
| Msa0407890 | Msa0452920 | 0.832118 | 1.134651e-55 | -8.615850e-47 |
| Msa0407890 | Msa0452940 | 0.800566 | 1.357489e-48 | -8.615850e-47 |
| Msa0407890 | Msa0484780 | 0.801966 | 7.017233e-49 | -8.615850e-47 |
| Msa0407890 | Msa0641360 | 0.805640 | 1.210752e-49 | -8.615850e-47 |
| Msa0407890 | Msa0682550 | 0.812685 | 3.744223e-51 | -8.615850e-47 |
| Msa0407890 | Msa0741900 | 0.800240 | 1.581174e-48 | -8.615850e-47 |
| Msa0407890 | Msa0742180 | 0.817005 | 4.125904e-52 | -8.615850e-47 |
| Msa0407890 | Msa0880140 | 0.804901 | 1.729395e-49 | -8.615850e-47 |
| Msa0407890 | Msa1007270 | 0.802044 | 6.760510e-49 | -8.615850e-47 |
| Msa0407890 | Msa1037910 | 0.810973 | 8.830167e-51 | -8.615850e-47 |
| Msa0407890 | Msa1037920 | 0.805644 | 1.208299e-49 | -8.615850e-47 |
| Msa0407890 | Msa1289280 | 0.806349 | 8.589459e-50 | -8.615850e-47 |
| Msa0407890 | Msa1420060 | 0.818362 | 2.039153e-52 | -8.615850e-47 |
| Msa0407890 | Msa1429420 | 0.823498 | 1.340828e-53 | -8.615850e-47 |
| Msa0407890 | Msa1452120 | 0.800140 | 1.656947e-48 | -8.615850e-47 |
| Msa0298240 | Msa0407890 | 0.819835 | 9.427330e-53 | -8.615850e-47 |
| Msa0331540 | Msa0407890 | 0.815715 | 8.022316e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0407890 | MtrunA17_Chr3g0098291 | 73.840 | 237 | 57 | 5 | 14 | 246 | 1 | 236 | 2.35e-118 | 337 |
| Msa0407890 | MtrunA17_Chr3g0098521 | 86.275 | 153 | 21 | 0 | 44 | 196 | 1 | 153 | 1.26e-98 | 284 |
| Msa0407890 | MtrunA17_Chr3g0098491 | 84.768 | 151 | 23 | 0 | 44 | 194 | 1 | 151 | 2.53e-95 | 276 |
| Msa0407890 | MtrunA17_Chr3g0102001 | 47.032 | 219 | 104 | 4 | 38 | 245 | 21 | 238 | 4.08e-58 | 196 |
| Msa0407890 | MtrunA17_Chr3g0098541 | 50.532 | 188 | 83 | 3 | 67 | 245 | 5 | 191 | 9.13e-57 | 184 |
| Msa0407890 | MtrunA17_Chr5g0439061 | 43.721 | 215 | 110 | 5 | 41 | 245 | 25 | 238 | 2.23e-45 | 161 |
| Msa0407890 | MtrunA17_Chr5g0439071 | 42.105 | 209 | 113 | 4 | 41 | 243 | 25 | 231 | 8.70e-45 | 157 |
| Msa0407890 | MtrunA17_Chr5g0439021 | 45.283 | 159 | 81 | 3 | 41 | 194 | 25 | 182 | 1.93e-38 | 132 |
| Msa0407890 | MtrunA17_Chr2g0286601 | 34.146 | 205 | 128 | 4 | 44 | 245 | 14 | 214 | 1.71e-26 | 107 |
| Msa0407890 | MtrunA17_Chr2g0286571 | 33.495 | 206 | 130 | 4 | 44 | 246 | 14 | 215 | 1.27e-25 | 102 |
| Msa0407890 | MtrunA17_Chr2g0286551 | 34.146 | 205 | 128 | 4 | 44 | 245 | 14 | 214 | 2.10e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGGCTGAATCATAGAATT+AGG | 0.302724 | 3_2:-47092426 | None:intergenic |
| ATAGCAAGATTGAGATCATT+TGG | 0.331887 | 3_2:-47093024 | None:intergenic |
| CTGTGCTTGCACGCCATAAA+AGG | 0.343353 | 3_2:+47092974 | Msa0407890:CDS |
| GAATGAAAATAAGAAGAATA+AGG | 0.349218 | 3_2:-47092339 | None:intergenic |
| TGAAACTTAATCTTAGAGTT+AGG | 0.353782 | 3_2:-47092387 | None:intergenic |
| TAAGTTTCAAACTTCCGAAA+TGG | 0.365986 | 3_2:+47092362 | Msa0407890:exon |
| CTTAGAGTTAGGATCCATTT+CGG | 0.385934 | 3_2:-47092376 | None:intergenic |
| TTTCACAAGATAAGAATAAA+GGG | 0.386097 | 3_2:+47092700 | Msa0407890:CDS |
| AAGTGACACAAACACATATA+TGG | 0.400607 | 3_2:+47093378 | Msa0407890:exon |
| CATAGAATTAGGATCCATTT+CGG | 0.411404 | 3_2:-47092415 | None:intergenic |
| TAAGTTTCAACCCACCGAAA+TGG | 0.417432 | 3_2:+47092401 | Msa0407890:CDS |
| GATTAAAGTAAACAATGAAA+AGG | 0.422133 | 3_2:+47092930 | Msa0407890:CDS |
| TAGCAAGATTGAGATCATTT+GGG | 0.422742 | 3_2:-47093023 | None:intergenic |
| CTTCACCTTGCAGCATATAG+AGG | 0.427598 | 3_2:+47092853 | Msa0407890:CDS |
| CTCTTGAAATTCTTGCTACT+AGG | 0.427955 | 3_2:+47093292 | Msa0407890:CDS |
| ATTAAAGTAAACAATGAAAA+GGG | 0.436606 | 3_2:+47092931 | Msa0407890:CDS |
| AGTTTGTAATGGAAGACAAA+TGG | 0.447631 | 3_2:+47092641 | Msa0407890:CDS |
| AAGAGGAGTATCACCTCTTT+CGG | 0.455469 | 3_2:-47092833 | None:intergenic |
| CGTGTTCCGCGAGTTTGTAA+TGG | 0.455705 | 3_2:+47092630 | Msa0407890:CDS |
| AATAAGGATCAATGAGAGAT+GGG | 0.462738 | 3_2:-47092323 | None:intergenic |
| ACCGAACATTTCTCTATGAA+TGG | 0.471652 | 3_2:-47093079 | None:intergenic |
| AGTATGTGTGAATGTATCAT+TGG | 0.478984 | 3_2:+47092883 | Msa0407890:CDS |
| GAATAAGGATCAATGAGAGA+TGG | 0.481962 | 3_2:-47092324 | None:intergenic |
| GCCATTCATAGAGAAATGTT+CGG | 0.497959 | 3_2:+47093078 | Msa0407890:CDS |
| GATCAATGAGAGATGGGTAG+TGG | 0.515618 | 3_2:-47092317 | None:intergenic |
| GTTTGTAATGGAAGACAAAT+GGG | 0.518683 | 3_2:+47092642 | Msa0407890:CDS |
| ATGAATGGCAACGTGAAGAA+TGG | 0.524484 | 3_2:-47093064 | None:intergenic |
| TTTGAAATGAAGACCGAAAG+AGG | 0.525545 | 3_2:+47092820 | Msa0407890:CDS |
| AAACTTATGTAGGTAAAGAA+AGG | 0.526958 | 3_2:-47092998 | None:intergenic |
| AAGATAAGAATAAAGGGAAG+AGG | 0.544798 | 3_2:+47092706 | Msa0407890:CDS |
| GTACCATCTTGAAAGTCATA+AGG | 0.546594 | 3_2:-47092468 | None:intergenic |
| GTACCTTATGACTTTCAAGA+TGG | 0.546774 | 3_2:+47092465 | Msa0407890:CDS |
| CATTACAAACTCGCGGAACA+CGG | 0.552796 | 3_2:-47092629 | None:intergenic |
| CTATATGCTGCAAGGTGAAG+AGG | 0.554034 | 3_2:-47092850 | None:intergenic |
| GAATTAGGATCCATTTCGGT+GGG | 0.559223 | 3_2:-47092411 | None:intergenic |
| CGCTCTACAGAGGACAAACA+TGG | 0.568320 | 3_2:+47093261 | Msa0407890:CDS |
| TGAATCCTCTATATGCTGCA+AGG | 0.593278 | 3_2:-47092858 | None:intergenic |
| CAATCTTGCTATGAATAACG+AGG | 0.598611 | 3_2:+47093035 | Msa0407890:CDS |
| AGAATTAGGATCCATTTCGG+TGG | 0.599853 | 3_2:-47092412 | None:intergenic |
| CTAGTAGCAAGAATTTCAAG+AGG | 0.608826 | 3_2:-47093291 | None:intergenic |
| GTAAAGCATAATGATCAAAG+TGG | 0.624361 | 3_2:+47092796 | Msa0407890:CDS |
| TGTCTTCCATTACAAACTCG+CGG | 0.659366 | 3_2:-47092636 | None:intergenic |
| AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_2:+47092723 | Msa0407890:CDS |
| AATCTTGCTATGAATAACGA+GGG | 0.709353 | 3_2:+47093036 | Msa0407890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTTTTATCAAGTTT+TGG | - | chr3_2:47093148-47093167 | None:intergenic | 10.0% |
| !!! | AAATATTTTTTATCAAGTTT+TGG | - | chr3_2:47093148-47093167 | None:intergenic | 10.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | - | chr3_2:47092561-47092580 | None:intergenic | 15.0% |
| !! | ATTAAAGTAAACAATGAAAA+GGG | + | chr3_2:47092931-47092950 | Msa0407890:CDS | 15.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | - | chr3_2:47092561-47092580 | None:intergenic | 15.0% |
| !! | ATTAAAGTAAACAATGAAAA+GGG | + | chr3_2:47092931-47092950 | Msa0407890:CDS | 15.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | - | chr3_2:47092342-47092361 | None:intergenic | 20.0% |
| !!! | TTTTCACAAGATAAGAATAA+AGG | + | chr3_2:47092699-47092718 | Msa0407890:CDS | 20.0% |
| !! | TTTCACAAGATAAGAATAAA+GGG | + | chr3_2:47092700-47092719 | Msa0407890:CDS | 20.0% |
| !! | GATTAAAGTAAACAATGAAA+AGG | + | chr3_2:47092930-47092949 | Msa0407890:CDS | 20.0% |
| !! | GAATGAAAATAAGAAGAATA+AGG | - | chr3_2:47092342-47092361 | None:intergenic | 20.0% |
| !!! | TTTTCACAAGATAAGAATAA+AGG | + | chr3_2:47092699-47092718 | Msa0407890:CDS | 20.0% |
| !! | TTTCACAAGATAAGAATAAA+GGG | + | chr3_2:47092700-47092719 | Msa0407890:CDS | 20.0% |
| !! | GATTAAAGTAAACAATGAAA+AGG | + | chr3_2:47092930-47092949 | Msa0407890:CDS | 20.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | - | chr3_2:47092390-47092409 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | + | chr3_2:47092495-47092514 | Msa0407890:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | - | chr3_2:47092558-47092577 | None:intergenic | 25.0% |
| ! | TCATTGGAAAAAATGATGAA+AGG | + | chr3_2:47092899-47092918 | Msa0407890:CDS | 25.0% |
| ! | AAACTTATGTAGGTAAAGAA+AGG | - | chr3_2:47093001-47093020 | None:intergenic | 25.0% |
| ! | TGAAACTTAATCTTAGAGTT+AGG | - | chr3_2:47092390-47092409 | None:intergenic | 25.0% |
| ! | AAACTCTCCTTATATTTATC+AGG | + | chr3_2:47092495-47092514 | Msa0407890:intron | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | - | chr3_2:47092558-47092577 | None:intergenic | 25.0% |
| ! | TCATTGGAAAAAATGATGAA+AGG | + | chr3_2:47092899-47092918 | Msa0407890:CDS | 25.0% |
| ! | AAACTTATGTAGGTAAAGAA+AGG | - | chr3_2:47093001-47093020 | None:intergenic | 25.0% |
| AATAAGGATCAATGAGAGAT+GGG | - | chr3_2:47092326-47092345 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | + | chr3_2:47092362-47092381 | Msa0407890:exon | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | - | chr3_2:47092418-47092437 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | - | chr3_2:47092447-47092466 | None:intergenic | 30.0% |
| ! | AGTTTGTAATGGAAGACAAA+TGG | + | chr3_2:47092641-47092660 | Msa0407890:CDS | 30.0% |
| ! | GTTTGTAATGGAAGACAAAT+GGG | + | chr3_2:47092642-47092661 | Msa0407890:CDS | 30.0% |
| AAGATAAGAATAAAGGGAAG+AGG | + | chr3_2:47092706-47092725 | Msa0407890:CDS | 30.0% | |
| GTAAAGCATAATGATCAAAG+TGG | + | chr3_2:47092796-47092815 | Msa0407890:CDS | 30.0% | |
| AGTATGTGTGAATGTATCAT+TGG | + | chr3_2:47092883-47092902 | Msa0407890:CDS | 30.0% | |
| CATTTGGGAAAAACTTATGT+AGG | - | chr3_2:47093011-47093030 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | - | chr3_2:47093026-47093045 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | - | chr3_2:47093027-47093046 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | + | chr3_2:47093036-47093055 | Msa0407890:CDS | 30.0% |
| ! | TAAAGAATTTTCTTCCACCA+TGG | - | chr3_2:47093351-47093370 | None:intergenic | 30.0% |
| AAGTGACACAAACACATATA+TGG | + | chr3_2:47093378-47093397 | Msa0407890:exon | 30.0% | |
| AATAAGGATCAATGAGAGAT+GGG | - | chr3_2:47092326-47092345 | None:intergenic | 30.0% | |
| TAAGTTTCAAACTTCCGAAA+TGG | + | chr3_2:47092362-47092381 | Msa0407890:exon | 30.0% | |
| CATAGAATTAGGATCCATTT+CGG | - | chr3_2:47092418-47092437 | None:intergenic | 30.0% | |
| ! | ACATTTTCATCTTCATCTTC+AGG | - | chr3_2:47092447-47092466 | None:intergenic | 30.0% |
| ! | AGTTTGTAATGGAAGACAAA+TGG | + | chr3_2:47092641-47092660 | Msa0407890:CDS | 30.0% |
| ! | GTTTGTAATGGAAGACAAAT+GGG | + | chr3_2:47092642-47092661 | Msa0407890:CDS | 30.0% |
| AAGATAAGAATAAAGGGAAG+AGG | + | chr3_2:47092706-47092725 | Msa0407890:CDS | 30.0% | |
| GTAAAGCATAATGATCAAAG+TGG | + | chr3_2:47092796-47092815 | Msa0407890:CDS | 30.0% | |
| AGTATGTGTGAATGTATCAT+TGG | + | chr3_2:47092883-47092902 | Msa0407890:CDS | 30.0% | |
| CATTTGGGAAAAACTTATGT+AGG | - | chr3_2:47093011-47093030 | None:intergenic | 30.0% | |
| TAGCAAGATTGAGATCATTT+GGG | - | chr3_2:47093026-47093045 | None:intergenic | 30.0% | |
| ATAGCAAGATTGAGATCATT+TGG | - | chr3_2:47093027-47093046 | None:intergenic | 30.0% | |
| ! | AATCTTGCTATGAATAACGA+GGG | + | chr3_2:47093036-47093055 | Msa0407890:CDS | 30.0% |
| ! | TAAAGAATTTTCTTCCACCA+TGG | - | chr3_2:47093351-47093370 | None:intergenic | 30.0% |
| AAGTGACACAAACACATATA+TGG | + | chr3_2:47093378-47093397 | Msa0407890:exon | 30.0% | |
| GAATAAGGATCAATGAGAGA+TGG | - | chr3_2:47092327-47092346 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | - | chr3_2:47092379-47092398 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | - | chr3_2:47092429-47092448 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | + | chr3_2:47092465-47092484 | Msa0407890:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | - | chr3_2:47092471-47092490 | None:intergenic | 35.0% | |
| CGAAGAGCCTGATAAATATA+AGG | - | chr3_2:47092505-47092524 | None:intergenic | 35.0% | |
| ! | TTTGAAATGAAGACCGAAAG+AGG | + | chr3_2:47092820-47092839 | Msa0407890:CDS | 35.0% |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | - | chr3_2:47092990-47093009 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | + | chr3_2:47093035-47093054 | Msa0407890:CDS | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | + | chr3_2:47093078-47093097 | Msa0407890:CDS | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | - | chr3_2:47093082-47093101 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | + | chr3_2:47093201-47093220 | Msa0407890:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | - | chr3_2:47093294-47093313 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | + | chr3_2:47093292-47093311 | Msa0407890:CDS | 35.0% | |
| GTAGTAAAAATCAGCTACCA+TGG | + | chr3_2:47093331-47093350 | Msa0407890:CDS | 35.0% | |
| GAATAAGGATCAATGAGAGA+TGG | - | chr3_2:47092327-47092346 | None:intergenic | 35.0% | |
| CTTAGAGTTAGGATCCATTT+CGG | - | chr3_2:47092379-47092398 | None:intergenic | 35.0% | |
| TCAGGCTGAATCATAGAATT+AGG | - | chr3_2:47092429-47092448 | None:intergenic | 35.0% | |
| GTACCTTATGACTTTCAAGA+TGG | + | chr3_2:47092465-47092484 | Msa0407890:CDS | 35.0% | |
| GTACCATCTTGAAAGTCATA+AGG | - | chr3_2:47092471-47092490 | None:intergenic | 35.0% | |
| CGAAGAGCCTGATAAATATA+AGG | - | chr3_2:47092505-47092524 | None:intergenic | 35.0% | |
| ! | TTTGAAATGAAGACCGAAAG+AGG | + | chr3_2:47092820-47092839 | Msa0407890:CDS | 35.0% |
| ! | GGTAAAGAAAGGTCCTTTTA+TGG | - | chr3_2:47092990-47093009 | None:intergenic | 35.0% |
| ! | CAATCTTGCTATGAATAACG+AGG | + | chr3_2:47093035-47093054 | Msa0407890:CDS | 35.0% |
| GCCATTCATAGAGAAATGTT+CGG | + | chr3_2:47093078-47093097 | Msa0407890:CDS | 35.0% | |
| ACCGAACATTTCTCTATGAA+TGG | - | chr3_2:47093082-47093101 | None:intergenic | 35.0% | |
| ATCTATGTGTCTTATGCAAC+AGG | + | chr3_2:47093201-47093220 | Msa0407890:intron | 35.0% | |
| CTAGTAGCAAGAATTTCAAG+AGG | - | chr3_2:47093294-47093313 | None:intergenic | 35.0% | |
| CTCTTGAAATTCTTGCTACT+AGG | + | chr3_2:47093292-47093311 | Msa0407890:CDS | 35.0% | |
| GTAGTAAAAATCAGCTACCA+TGG | + | chr3_2:47093331-47093350 | Msa0407890:CDS | 35.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | + | chr3_2:47092401-47092420 | Msa0407890:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | - | chr3_2:47092414-47092433 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | - | chr3_2:47092415-47092434 | None:intergenic | 40.0% | |
| TGTCTTCCATTACAAACTCG+CGG | - | chr3_2:47092639-47092658 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | + | chr3_2:47092723-47092742 | Msa0407890:CDS | 40.0% | |
| ! | ACGTTTTACACTGTCTTCGT+CGG | - | chr3_2:47092761-47092780 | None:intergenic | 40.0% |
| !! | AAGAGGAGTATCACCTCTTT+CGG | - | chr3_2:47092836-47092855 | None:intergenic | 40.0% |
| TGAATCCTCTATATGCTGCA+AGG | - | chr3_2:47092861-47092880 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | - | chr3_2:47093067-47093086 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | + | chr3_2:47093206-47093225 | Msa0407890:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | + | chr3_2:47093251-47093270 | Msa0407890:CDS | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | - | chr3_2:47093255-47093274 | None:intergenic | 40.0% | |
| GTAAAAATCAGCTACCATGG+TGG | + | chr3_2:47093334-47093353 | Msa0407890:CDS | 40.0% | |
| TAAGTTTCAACCCACCGAAA+TGG | + | chr3_2:47092401-47092420 | Msa0407890:CDS | 40.0% | |
| GAATTAGGATCCATTTCGGT+GGG | - | chr3_2:47092414-47092433 | None:intergenic | 40.0% | |
| AGAATTAGGATCCATTTCGG+TGG | - | chr3_2:47092415-47092434 | None:intergenic | 40.0% | |
| TGTCTTCCATTACAAACTCG+CGG | - | chr3_2:47092639-47092658 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | + | chr3_2:47092723-47092742 | Msa0407890:CDS | 40.0% | |
| ! | ACGTTTTACACTGTCTTCGT+CGG | - | chr3_2:47092761-47092780 | None:intergenic | 40.0% |
| !! | AAGAGGAGTATCACCTCTTT+CGG | - | chr3_2:47092836-47092855 | None:intergenic | 40.0% |
| TGAATCCTCTATATGCTGCA+AGG | - | chr3_2:47092861-47092880 | None:intergenic | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | - | chr3_2:47093067-47093086 | None:intergenic | 40.0% | |
| TGTGTCTTATGCAACAGGTA+TGG | + | chr3_2:47093206-47093225 | Msa0407890:intron | 40.0% | |
| ! | TCCAATTTTTCGCTCTACAG+AGG | + | chr3_2:47093251-47093270 | Msa0407890:CDS | 40.0% |
| TCCTCTGTAGAGCGAAAAAT+TGG | - | chr3_2:47093255-47093274 | None:intergenic | 40.0% | |
| GTAAAAATCAGCTACCATGG+TGG | + | chr3_2:47093334-47093353 | Msa0407890:CDS | 40.0% | |
| GATCAATGAGAGATGGGTAG+TGG | - | chr3_2:47092320-47092339 | None:intergenic | 45.0% | |
| CATTACAAACTCGCGGAACA+CGG | - | chr3_2:47092632-47092651 | None:intergenic | 45.0% | |
| CTATATGCTGCAAGGTGAAG+AGG | - | chr3_2:47092853-47092872 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | + | chr3_2:47092853-47092872 | Msa0407890:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+TGG | - | chr3_2:47092964-47092983 | None:intergenic | 45.0% | |
| GATCAATGAGAGATGGGTAG+TGG | - | chr3_2:47092320-47092339 | None:intergenic | 45.0% | |
| CATTACAAACTCGCGGAACA+CGG | - | chr3_2:47092632-47092651 | None:intergenic | 45.0% | |
| CTATATGCTGCAAGGTGAAG+AGG | - | chr3_2:47092853-47092872 | None:intergenic | 45.0% | |
| CTTCACCTTGCAGCATATAG+AGG | + | chr3_2:47092853-47092872 | Msa0407890:CDS | 45.0% | |
| GCAAGCACAGCACAAAAAAG+TGG | - | chr3_2:47092964-47092983 | None:intergenic | 45.0% | |
| CGTGTTCCGCGAGTTTGTAA+TGG | + | chr3_2:47092630-47092649 | Msa0407890:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | + | chr3_2:47092974-47092993 | Msa0407890:CDS | 50.0% | |
| CGCTCTACAGAGGACAAACA+TGG | + | chr3_2:47093261-47093280 | Msa0407890:CDS | 50.0% | |
| CGTGTTCCGCGAGTTTGTAA+TGG | + | chr3_2:47092630-47092649 | Msa0407890:CDS | 50.0% | |
| CTGTGCTTGCACGCCATAAA+AGG | + | chr3_2:47092974-47092993 | Msa0407890:CDS | 50.0% | |
| CGCTCTACAGAGGACAAACA+TGG | + | chr3_2:47093261-47093280 | Msa0407890:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 47092317 | 47093405 | 47092317 | ID=Msa0407890;Name=Msa0407890 |
| chr3_2 | mRNA | 47092317 | 47093405 | 47092317 | ID=Msa0407890-mRNA-1;Parent=Msa0407890;Name=Msa0407890-mRNA-1;_AED=0.07;_eAED=0.07;_QI=64|1|1|1|1|1|3|22|246 |
| chr3_2 | exon | 47092317 | 47092486 | 47092317 | ID=Msa0407890-mRNA-1:exon:9046;Parent=Msa0407890-mRNA-1 |
| chr3_2 | exon | 47092626 | 47093099 | 47092626 | ID=Msa0407890-mRNA-1:exon:9047;Parent=Msa0407890-mRNA-1 |
| chr3_2 | exon | 47093223 | 47093405 | 47093223 | ID=Msa0407890-mRNA-1:exon:9048;Parent=Msa0407890-mRNA-1 |
| chr3_2 | five_prime_UTR | 47092317 | 47092380 | 47092317 | ID=Msa0407890-mRNA-1:five_prime_utr;Parent=Msa0407890-mRNA-1 |
| chr3_2 | CDS | 47092381 | 47092486 | 47092381 | ID=Msa0407890-mRNA-1:cds;Parent=Msa0407890-mRNA-1 |
| chr3_2 | CDS | 47092626 | 47093099 | 47092626 | ID=Msa0407890-mRNA-1:cds;Parent=Msa0407890-mRNA-1 |
| chr3_2 | CDS | 47093223 | 47093383 | 47093223 | ID=Msa0407890-mRNA-1:cds;Parent=Msa0407890-mRNA-1 |
| chr3_2 | three_prime_UTR | 47093384 | 47093405 | 47093384 | ID=Msa0407890-mRNA-1:three_prime_utr;Parent=Msa0407890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
