Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452940 | XP_024634879.1 | 73.200 | 250 | 59 | 2 | 1 | 249 | 1 | 243 | 2.76e-124 | 381 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452940 | A0A396IRP0 | 70.000 | 240 | 64 | 5 | 15 | 250 | 1 | 236 | 3.37e-107 | 318 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0142200 | Msa0452940 | 0.809378 | 1.948884e-50 | -8.615850e-47 |
| Msa0227470 | Msa0452940 | 0.808392 | 3.168198e-50 | -8.615850e-47 |
| Msa0407780 | Msa0452940 | 0.814400 | 1.571099e-51 | -8.615850e-47 |
| Msa0407810 | Msa0452940 | 0.889500 | 2.292181e-73 | -8.615850e-47 |
| Msa0407890 | Msa0452940 | 0.800566 | 1.357489e-48 | -8.615850e-47 |
| Msa0452920 | Msa0452940 | 0.803285 | 3.750171e-49 | -8.615850e-47 |
| Msa0452940 | Msa0499480 | 0.905385 | 4.537254e-80 | -8.615850e-47 |
| Msa0360540 | Msa0452940 | 0.881714 | 1.907135e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452940 | MtrunA17_Chr3g0098291 | 70.000 | 240 | 64 | 5 | 15 | 250 | 1 | 236 | 6.48e-111 | 318 |
| Msa0452940 | MtrunA17_Chr3g0098521 | 77.124 | 153 | 35 | 0 | 49 | 201 | 1 | 153 | 2.68e-84 | 248 |
| Msa0452940 | MtrunA17_Chr3g0098491 | 76.159 | 151 | 36 | 0 | 49 | 199 | 1 | 151 | 3.55e-81 | 240 |
| Msa0452940 | MtrunA17_Chr3g0102001 | 49.772 | 219 | 97 | 4 | 43 | 249 | 21 | 238 | 2.10e-57 | 194 |
| Msa0452940 | MtrunA17_Chr3g0098541 | 52.406 | 187 | 80 | 2 | 72 | 249 | 5 | 191 | 3.75e-56 | 183 |
| Msa0452940 | MtrunA17_Chr5g0439061 | 44.340 | 212 | 104 | 5 | 50 | 249 | 29 | 238 | 4.66e-43 | 155 |
| Msa0452940 | MtrunA17_Chr5g0439071 | 40.476 | 210 | 114 | 3 | 46 | 247 | 25 | 231 | 1.07e-41 | 149 |
| Msa0452940 | MtrunA17_Chr5g0439021 | 41.615 | 161 | 84 | 3 | 46 | 199 | 25 | 182 | 3.06e-32 | 116 |
| Msa0452940 | MtrunA17_Chr2g0286601 | 35.294 | 204 | 126 | 3 | 49 | 249 | 14 | 214 | 5.54e-28 | 112 |
| Msa0452940 | MtrunA17_Chr2g0286571 | 36.098 | 205 | 123 | 4 | 49 | 249 | 14 | 214 | 5.77e-28 | 108 |
| Msa0452940 | MtrunA17_Chr2g0286551 | 34.804 | 204 | 127 | 3 | 49 | 249 | 14 | 214 | 1.89e-25 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 39 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGAGAAACACCACTCTTT+TGG | 0.238209 | 3_3:-42841881 | Msa0452940:CDS |
| TGAGACTGAATCATAGAATT+AGG | 0.239693 | 3_3:+42842503 | None:intergenic |
| TGAGGCTGAATCATAGAATT+AGG | 0.314261 | 3_3:+42842545 | None:intergenic |
| TTAGAATGAAAATAAGAAAA+AGG | 0.336267 | 3_3:+42842590 | None:intergenic |
| TCATTGGAGAAGATGGTAAA+AGG | 0.344288 | 3_3:-42841932 | Msa0452940:CDS |
| TTCATCTTCATCTTCATCTT+CGG | 0.366491 | 3_3:+42842472 | None:intergenic |
| ATTTGTCTTCCATTACTAAC+TGG | 0.368328 | 3_3:+42842192 | None:intergenic |
| GCCATTCATAGAGAAATATT+CGG | 0.388945 | 3_3:-42841753 | Msa0452940:intron |
| TAAGTGTCAAACTTCTGAAA+TGG | 0.396422 | 3_3:-42842570 | Msa0452940:exon |
| ATAGCAAGATTGATATCATA+TGG | 0.409074 | 3_3:+42841807 | None:intergenic |
| CTCTTGAACTTCTTGCTACT+AGG | 0.427415 | 3_3:-42839772 | Msa0452940:CDS |
| GTTAGTAATGGAAGACAAAT+GGG | 0.435267 | 3_3:-42842189 | Msa0452940:CDS |
| AGTTAGTAATGGAAGACAAA+TGG | 0.436776 | 3_3:-42842190 | Msa0452940:CDS |
| AGTATATGTGAATGTATCAT+TGG | 0.446416 | 3_3:-42841948 | Msa0452940:CDS |
| ACCGAATATTTCTCTATGAA+TGG | 0.459441 | 3_3:+42841752 | None:intergenic |
| TTCATTTCATCTTCATCTTG+AGG | 0.482522 | 3_3:+42842527 | None:intergenic |
| CTTCATAGTGCAGCATATAG+AGG | 0.496464 | 3_3:-42841978 | Msa0452940:CDS |
| AGAGTGGAAATAAGCTATCA+TGG | 0.522573 | 3_3:-42839736 | Msa0452940:CDS |
| CGCTCTATGGAGGACAAACA+TGG | 0.524121 | 3_3:-42839803 | Msa0452940:CDS |
| ATGAATGGCAACGTGAAGAA+TGG | 0.528135 | 3_3:+42841767 | None:intergenic |
| CTAGTAGCAAGAAGTTCAAG+AGG | 0.536869 | 3_3:+42839773 | None:intergenic |
| AAACTGATGTAGGTAAAGAA+AGG | 0.539480 | 3_3:+42841833 | None:intergenic |
| CGTGTTCCGCCAGTTAGTAA+TGG | 0.552591 | 3_3:-42842201 | Msa0452940:CDS |
| GTAAGCAATGCCTACAAAGA+TGG | 0.555466 | 3_3:-42842083 | Msa0452940:CDS |
| AGGAAATCAGCTTTCAAGAG+TGG | 0.555521 | 3_3:-42839752 | Msa0452940:CDS |
| GATCAATGAGAGATGGGTAG+TGG | 0.563626 | 3_3:+42842612 | None:intergenic |
| TAGCAAGATTGATATCATAT+GGG | 0.563968 | 3_3:+42841808 | None:intergenic |
| CTATATGCTGCACTATGAAG+AGG | 0.567355 | 3_3:+42841981 | None:intergenic |
| CATTACTAACTGGCGGAACA+CGG | 0.570660 | 3_3:+42842202 | None:intergenic |
| GAAGATTATGACTCTCAAGA+TGG | 0.573204 | 3_3:-42842452 | Msa0452940:intron |
| GACTTGTAGATGCAATAGAA+AGG | 0.582410 | 3_3:-42842052 | Msa0452940:CDS |
| GAATGTATCATTGGAGAAGA+TGG | 0.599648 | 3_3:-42841939 | Msa0452940:CDS |
| GAAAGGCATGGTGATCTAAG+TGG | 0.601066 | 3_3:-42842035 | Msa0452940:CDS |
| GCAAGCACAGCCCAAAAGAG+TGG | 0.605571 | 3_3:+42841870 | None:intergenic |
| AATCTTGCTATCAATAACAA+TGG | 0.617874 | 3_3:-42841795 | Msa0452940:CDS |
| TGTCTTCCATTACTAACTGG+CGG | 0.631097 | 3_3:+42842195 | None:intergenic |
| GTAGATGCAATAGAAAGGCA+TGG | 0.659549 | 3_3:-42842047 | Msa0452940:CDS |
| AAGAGGAACAGCATTACATG+TGG | 0.700334 | 3_3:-42842108 | Msa0452940:CDS |
| GTGGAAATAAGCTATCATGG+TGG | 0.721299 | 3_3:-42839733 | Msa0452940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAGTTAAAATATAATAA+TGG | - | chr3_3:42840706-42840725 | Msa0452940:intron | 10.0% |
| !!! | TTTTTTTTTTTTTTAGGTTT+AGG | + | chr3_3:42840783-42840802 | None:intergenic | 10.0% |
| !! | TTAATTATTTAAAGAAAAGT+GGG | - | chr3_3:42841051-42841070 | Msa0452940:intron | 10.0% |
| !! | ATTATAAAATTTCATTCTAT+TGG | + | chr3_3:42841387-42841406 | None:intergenic | 10.0% |
| !!! | ATAATCGTAAATTAAATTTT+TGG | + | chr3_3:42841582-42841601 | None:intergenic | 10.0% |
| !! | TTAGAATGAAAATAAGAAAA+AGG | + | chr3_3:42839731-42839750 | None:intergenic | 15.0% |
| !! | TTAATTAATCACAAAAATGT+TGG | + | chr3_3:42839947-42839966 | None:intergenic | 15.0% |
| !! | TTAATGTCACATTAAAAAAT+TGG | + | chr3_3:42840048-42840067 | None:intergenic | 15.0% |
| !!! | TTTTCACAAGATAAAAATAA+AGG | - | chr3_3:42840186-42840205 | Msa0452940:intron | 15.0% |
| !! | TTTCACAAGATAAAAATAAA+GGG | - | chr3_3:42840187-42840206 | Msa0452940:intron | 15.0% |
| !!! | AATTTTAAGTAAAAAACACA+AGG | - | chr3_3:42840729-42840748 | Msa0452940:intron | 15.0% |
| !!! | GTAGGTTTTTTTTTTTTTTT+AGG | + | chr3_3:42840789-42840808 | None:intergenic | 15.0% |
| !!! | ACTTAATCCATAATAATTTT+AGG | + | chr3_3:42840817-42840836 | None:intergenic | 15.0% |
| !! | AATAAAAAAATTAGTAAGGA+AGG | + | chr3_3:42840903-42840922 | None:intergenic | 15.0% |
| !! | CTTAATTATTTAAAGAAAAG+TGG | - | chr3_3:42841050-42841069 | Msa0452940:intron | 15.0% |
| !! | AAAAATAAGAAAGGTTAAAA+TGG | - | chr3_3:42841915-42841934 | Msa0452940:CDS | 15.0% |
| !!! | TATATTAATTGATAATGAGT+TGG | + | chr3_3:42842174-42842193 | None:intergenic | 15.0% |
| !!! | AATTAATCAGCTTTTATTTA+TGG | + | chr3_3:42842215-42842234 | None:intergenic | 15.0% |
| !!! | ACTTTGAAATTTTATTCTTA+AGG | + | chr3_3:42842309-42842328 | None:intergenic | 15.0% |
| !! | AAACTCTCCTTATATTTATT+AGG | - | chr3_3:42839896-42839915 | Msa0452940:intron | 20.0% |
| !! | ATTAGAGTAAAAAATGCAAA+GGG | - | chr3_3:42840418-42840437 | Msa0452940:intron | 20.0% |
| !!! | CTTACTTTCTTTTTATTTGT+CGG | - | chr3_3:42840637-42840656 | Msa0452940:intron | 20.0% |
| !!! | TTTTTTTTTAGGTTTAGGAA+AGG | + | chr3_3:42840778-42840797 | None:intergenic | 20.0% |
| !!! | AATCCATAATAATTTTAGGT+AGG | + | chr3_3:42840813-42840832 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAAAACTTGTGT+GGG | + | chr3_3:42840987-42841006 | None:intergenic | 20.0% |
| !! | TCAAAAAAAAAAAACTTGTG+TGG | + | chr3_3:42840988-42841007 | None:intergenic | 20.0% |
| !!! | TTATTTAAAACTTGTAGTTG+GGG | + | chr3_3:42841129-42841148 | None:intergenic | 20.0% |
| !!! | GTTATTTAAAACTTGTAGTT+GGG | + | chr3_3:42841130-42841149 | None:intergenic | 20.0% |
| !!! | TGTTATTTAAAACTTGTAGT+TGG | + | chr3_3:42841131-42841150 | None:intergenic | 20.0% |
| !!! | CTACAAGTTTTAAATAACAA+AGG | - | chr3_3:42841132-42841151 | Msa0452940:intron | 20.0% |
| !! | TGATAAATAATTATGTTCCA+TGG | - | chr3_3:42841255-42841274 | Msa0452940:intron | 20.0% |
| !!! | AAAAGTAGAAGTTTTTCTAT+GGG | + | chr3_3:42841517-42841536 | None:intergenic | 20.0% |
| !! | TTAAATCTAGATTGTTAGTT+TGG | + | chr3_3:42841540-42841559 | None:intergenic | 20.0% |
| !!! | ACCTTTCTTATTTTTAATAG+CGG | + | chr3_3:42841910-42841929 | None:intergenic | 20.0% |
| !! | AAATGTATTTACCAACATTA+TGG | + | chr3_3:42842046-42842065 | None:intergenic | 20.0% |
| !! | TTAATAAAGAAATTCTCCTA+TGG | - | chr3_3:42842365-42842384 | Msa0452940:intron | 20.0% |
| !! | TTTAGATTAAACTTTACCAT+AGG | + | chr3_3:42842384-42842403 | None:intergenic | 20.0% |
| !!! | GATATATACAGTAAGAATTT+TGG | + | chr3_3:42842426-42842445 | None:intergenic | 20.0% |
| ! | TAAGGAGCCTAATAAATATA+AGG | + | chr3_3:42839906-42839925 | None:intergenic | 25.0% |
| ! | ATGTCACATTAAAAAATTGG+AGG | + | chr3_3:42840045-42840064 | None:intergenic | 25.0% |
| ! | AAGATAAAAATAAAGGGAAG+AGG | - | chr3_3:42840193-42840212 | Msa0452940:intron | 25.0% |
| ! | AGTATATGTGAATGTATCAT+TGG | - | chr3_3:42840370-42840389 | Msa0452940:intron | 25.0% |
| ! | GATTAGAGTAAAAAATGCAA+AGG | - | chr3_3:42840417-42840436 | Msa0452940:intron | 25.0% |
| ! | TAGCAAGATTGATATCATAT+GGG | + | chr3_3:42840513-42840532 | None:intergenic | 25.0% |
| ! | ATAGCAAGATTGATATCATA+TGG | + | chr3_3:42840514-42840533 | None:intergenic | 25.0% |
| !! | AATCTTGCTATCAATAACAA+TGG | - | chr3_3:42840523-42840542 | Msa0452940:intron | 25.0% |
| !!! | TAATAATTTTAGGTAGGTGT+AGG | + | chr3_3:42840807-42840826 | None:intergenic | 25.0% |
| ! | ACACCTACCTAAAATTATTA+TGG | - | chr3_3:42840807-42840826 | Msa0452940:intron | 25.0% |
| ! | GTGAATGTAAATAATCAAGT+GGG | + | chr3_3:42840852-42840871 | None:intergenic | 25.0% |
| ! | AGTGAATGTAAATAATCAAG+TGG | + | chr3_3:42840853-42840872 | None:intergenic | 25.0% |
| !! | TATTTAAAACTTGTAGTTGG+GGG | + | chr3_3:42841128-42841147 | None:intergenic | 25.0% |
| ! | AATAATTATGTTCCATGGTT+TGG | - | chr3_3:42841260-42841279 | Msa0452940:intron | 25.0% |
| ! | TTGGATTTGCAAAAACTAAA+TGG | - | chr3_3:42841279-42841298 | Msa0452940:intron | 25.0% |
| ! | TTTGCAAAAACTAAATGGAA+TGG | - | chr3_3:42841284-42841303 | Msa0452940:intron | 25.0% |
| ! | AAAAACTAAATGGAATGGAA+TGG | - | chr3_3:42841289-42841308 | Msa0452940:intron | 25.0% |
| ! | AATAGAAGAAATGATACATG+CGG | - | chr3_3:42841421-42841440 | Msa0452940:intron | 25.0% |
| !! | AAAGTAGAAGTTTTTCTATG+GGG | + | chr3_3:42841516-42841535 | None:intergenic | 25.0% |
| !! | GAAAAGTAGAAGTTTTTCTA+TGG | + | chr3_3:42841518-42841537 | None:intergenic | 25.0% |
| !! | TAATTTTCACAATAGTCAGT+TGG | + | chr3_3:42841685-42841704 | None:intergenic | 25.0% |
| !!! | AATTCTCTTTAAGGTGATTT+CGG | + | chr3_3:42841718-42841737 | None:intergenic | 25.0% |
| ! | AGCAGATTTAATTCTCTTTA+AGG | + | chr3_3:42841727-42841746 | None:intergenic | 25.0% |
| !! | ACTTTTATTACCAATCAACA+AGG | - | chr3_3:42841770-42841789 | Msa0452940:CDS | 25.0% |
| ! | ATAGTATAAGATATCTTCTC+TGG | + | chr3_3:42841855-42841874 | None:intergenic | 25.0% |
| ! | GAAGATATCTTATACTATAG+TGG | - | chr3_3:42841857-42841876 | Msa0452940:CDS | 25.0% |
| ! | ACAACTTATGTTCTTGTTAA+CGG | + | chr3_3:42841990-42842009 | None:intergenic | 25.0% |
| AAAAAGGATCAATGAGAGAT+GGG | + | chr3_3:42839715-42839734 | None:intergenic | 30.0% | |
| ! | TAAGTGTCAAACTTCTGAAA+TGG | - | chr3_3:42839748-42839767 | Msa0452940:CDS | 30.0% |
| TTCATTTCATCTTCATCTTG+AGG | + | chr3_3:42839794-42839813 | None:intergenic | 30.0% | |
| TGAGACTGAATCATAGAATT+AGG | + | chr3_3:42839818-42839837 | None:intergenic | 30.0% | |
| TTCATCTTCATCTTCATCTT+CGG | + | chr3_3:42839849-42839868 | None:intergenic | 30.0% | |
| AAAGATTGAACGTCAACTTA+AGG | + | chr3_3:42839924-42839943 | None:intergenic | 30.0% | |
| !! | TTAGTCTTACTTCAATGATG+AGG | - | chr3_3:42839990-42840009 | Msa0452940:intron | 30.0% |
| ATTTGTCTTCCATTACTAAC+TGG | + | chr3_3:42840129-42840148 | None:intergenic | 30.0% | |
| ! | AGTTAGTAATGGAAGACAAA+TGG | - | chr3_3:42840128-42840147 | Msa0452940:intron | 30.0% |
| ! | GTTAGTAATGGAAGACAAAT+GGG | - | chr3_3:42840129-42840148 | Msa0452940:intron | 30.0% |
| ! | GGTAAAGAAAGGTCTTTTTA+TGG | + | chr3_3:42840477-42840496 | None:intergenic | 30.0% |
| AAACTGATGTAGGTAAAGAA+AGG | + | chr3_3:42840488-42840507 | None:intergenic | 30.0% | |
| GCCATTCATAGAGAAATATT+CGG | - | chr3_3:42840565-42840584 | Msa0452940:intron | 30.0% | |
| ACCGAATATTTCTCTATGAA+TGG | + | chr3_3:42840569-42840588 | None:intergenic | 30.0% | |
| GTGTAAATAACTAGTAAGGT+AGG | + | chr3_3:42840941-42840960 | None:intergenic | 30.0% | |
| GTGAGTGTAAATAACTAGTA+AGG | + | chr3_3:42840945-42840964 | None:intergenic | 30.0% | |
| TGGGTGTAAATTAACAAAGT+GGG | - | chr3_3:42841070-42841089 | Msa0452940:intron | 30.0% | |
| AAGTTGCTAATTTACTCCTT+AGG | - | chr3_3:42841188-42841207 | Msa0452940:intron | 30.0% | |
| TGGAATGGAATGGTATATAA+TGG | - | chr3_3:42841299-42841318 | Msa0452940:intron | 30.0% | |
| TTTGATGGAATAAGATGGAA+TGG | + | chr3_3:42841328-42841347 | None:intergenic | 30.0% | |
| ATAGAAGAAATGATACATGC+GGG | - | chr3_3:42841422-42841441 | Msa0452940:intron | 30.0% | |
| ! | AAGTAGAAGTTTTTCTATGG+GGG | + | chr3_3:42841515-42841534 | None:intergenic | 30.0% |
| GATTTAATATGATCAACCAG+AGG | - | chr3_3:42841553-42841572 | Msa0452940:intron | 30.0% | |
| !! | ATTAAATTTTTGGACACCTC+TGG | + | chr3_3:42841572-42841591 | None:intergenic | 30.0% |
| AGATATCTTCTCTGGTTATA+AGG | + | chr3_3:42841847-42841866 | None:intergenic | 30.0% | |
| !!! | TTCTTATTTTTAATAGCGGC+CGG | + | chr3_3:42841906-42841925 | None:intergenic | 30.0% |
| GCCGCTATTAAAAATAAGAA+AGG | - | chr3_3:42841906-42841925 | Msa0452940:CDS | 30.0% | |
| GTTAAAATGGATCACCTTAA+CGG | - | chr3_3:42841928-42841947 | Msa0452940:CDS | 30.0% | |
| TTAAAATGGATCACCTTAAC+GGG | - | chr3_3:42841929-42841948 | Msa0452940:CDS | 30.0% | |
| ATCTATTTCCTCCATAATGT+TGG | - | chr3_3:42842032-42842051 | Msa0452940:CDS | 30.0% | |
| TGTATTTACCAACATTATGG+AGG | + | chr3_3:42842043-42842062 | None:intergenic | 30.0% | |
| ! | TATGGTCGTCAAATTTTTGA+CGG | + | chr3_3:42842197-42842216 | None:intergenic | 30.0% |
| GAAAAAGGATCAATGAGAGA+TGG | + | chr3_3:42839716-42839735 | None:intergenic | 35.0% | |
| TGAGGCTGAATCATAGAATT+AGG | + | chr3_3:42839776-42839795 | None:intergenic | 35.0% | |
| GAAGATTATGACTCTCAAGA+TGG | - | chr3_3:42839866-42839885 | Msa0452940:intron | 35.0% | |
| ACTTCAATGATGAGGCAATT+AGG | - | chr3_3:42839998-42840017 | Msa0452940:intron | 35.0% | |
| TGGAGGAAAAATTATGCACA+TGG | + | chr3_3:42840028-42840047 | None:intergenic | 35.0% | |
| ! | TCGTTTTACACCATCTTTGT+AGG | + | chr3_3:42840248-42840267 | None:intergenic | 35.0% |
| GACTTGTAGATGCAATAGAA+AGG | - | chr3_3:42840266-42840285 | Msa0452940:intron | 35.0% | |
| GAATGTATCATTGGAGAAGA+TGG | - | chr3_3:42840379-42840398 | Msa0452940:intron | 35.0% | |
| TCATTGGAGAAGATGGTAAA+AGG | - | chr3_3:42840386-42840405 | Msa0452940:intron | 35.0% | |
| CATATGGGAAAAACTGATGT+AGG | + | chr3_3:42840498-42840517 | None:intergenic | 35.0% | |
| GTAAATAATCAAGTGGGTGT+AGG | + | chr3_3:42840846-42840865 | None:intergenic | 35.0% | |
| GTGGGTGTAAATTAACAAAG+TGG | - | chr3_3:42841069-42841088 | Msa0452940:intron | 35.0% | |
| ! | GTTTTTGCAAATCCAAACCA+TGG | + | chr3_3:42841275-42841294 | None:intergenic | 35.0% |
| GAGGATTTGATGGAATAAGA+TGG | + | chr3_3:42841333-42841352 | None:intergenic | 35.0% | |
| ATGAAAAGTGGAGGATTTGA+TGG | + | chr3_3:42841343-42841362 | None:intergenic | 35.0% | |
| TATTGGATACACCCCAAATT+GGG | + | chr3_3:42841370-42841389 | None:intergenic | 35.0% | |
| ! | TATTTGGGTTTACCTATAGG+TGG | + | chr3_3:42841607-42841626 | None:intergenic | 35.0% |
| ! | TCGTATTTGGGTTTACCTAT+AGG | + | chr3_3:42841610-42841629 | None:intergenic | 35.0% |
| ACGGTGCTTAGTTGTAAAAT+TGG | + | chr3_3:42841646-42841665 | None:intergenic | 35.0% | |
| TTCACAATAGTCAGTTGGTT+TGG | + | chr3_3:42841680-42841699 | None:intergenic | 35.0% | |
| TGCTTTCGAAGATCTAATGT+TGG | - | chr3_3:42841743-42841762 | Msa0452940:intron | 35.0% | |
| TCATCCACAAATTGAAGATG+CGG | - | chr3_3:42841795-42841814 | Msa0452940:CDS | 35.0% | |
| ! | TTTTCCGCATCTTCAATTTG+TGG | + | chr3_3:42841802-42841821 | None:intergenic | 35.0% |
| !!! | TATAAGGTTGGTGATGGTTT+TGG | + | chr3_3:42841831-42841850 | None:intergenic | 35.0% |
| ATCTTCTCTGGTTATAAGGT+TGG | + | chr3_3:42841843-42841862 | None:intergenic | 35.0% | |
| !!! | TCTTATTTTTAATAGCGGCC+GGG | + | chr3_3:42841905-42841924 | None:intergenic | 35.0% |
| TAAAATGGATCACCTTAACG+GGG | - | chr3_3:42841930-42841949 | Msa0452940:CDS | 35.0% | |
| CTCAGAGGATTGAAATTACT+TGG | + | chr3_3:42842084-42842103 | None:intergenic | 35.0% | |
| AGTAGCTAGCCAATTAGATA+AGG | + | chr3_3:42842257-42842276 | None:intergenic | 35.0% | |
| AGGTGTAGTTGTGATCTAAA+TGG | + | chr3_3:42842289-42842308 | None:intergenic | 35.0% | |
| AGAGTGGAAATAAGCTATCA+TGG | - | chr3_3:42842582-42842601 | Msa0452940:five_prime_UTR | 35.0% | |
| TGTCTTCCATTACTAACTGG+CGG | + | chr3_3:42840126-42840145 | None:intergenic | 40.0% | |
| AAGAGGAACAGCATTACATG+TGG | - | chr3_3:42840210-42840229 | Msa0452940:intron | 40.0% | |
| GTAAGCAATGCCTACAAAGA+TGG | - | chr3_3:42840235-42840254 | Msa0452940:intron | 40.0% | |
| GTAGATGCAATAGAAAGGCA+TGG | - | chr3_3:42840271-42840290 | Msa0452940:intron | 40.0% | |
| CTATATGCTGCACTATGAAG+AGG | + | chr3_3:42840340-42840359 | None:intergenic | 40.0% | |
| CTTCATAGTGCAGCATATAG+AGG | - | chr3_3:42840340-42840359 | Msa0452940:intron | 40.0% | |
| ATGAATGGCAACGTGAAGAA+TGG | + | chr3_3:42840554-42840573 | None:intergenic | 40.0% | |
| ATTAGCAACTTGCACTCACT+TGG | + | chr3_3:42841179-42841198 | None:intergenic | 40.0% | |
| CATCAATCGAACACAACCTA+AGG | + | chr3_3:42841207-42841226 | None:intergenic | 40.0% | |
| ! | CTTAGGTTGTGTTCGATTGA+TGG | - | chr3_3:42841205-42841224 | Msa0452940:intron | 40.0% |
| GTTCGATTGATGGAATGTGA+TGG | - | chr3_3:42841215-42841234 | Msa0452940:intron | 40.0% | |
| ! | ATTGATGGAATGTGATGGAG+TGG | - | chr3_3:42841220-42841239 | Msa0452940:intron | 40.0% |
| ! | TTGATGGAATGTGATGGAGT+GGG | - | chr3_3:42841221-42841240 | Msa0452940:intron | 40.0% |
| AAATTGGGGGGAATGAAAAG+TGG | + | chr3_3:42841355-42841374 | None:intergenic | 40.0% | |
| ! | ACTTTTCATTCCCCCCAATT+TGG | - | chr3_3:42841354-42841373 | Msa0452940:intron | 40.0% |
| ! | CTTTTCATTCCCCCCAATTT+GGG | - | chr3_3:42841355-42841374 | Msa0452940:intron | 40.0% |
| ! | TTTTCATTCCCCCCAATTTG+GGG | - | chr3_3:42841356-42841375 | Msa0452940:intron | 40.0% |
| ATTGGATACACCCCAAATTG+GGG | + | chr3_3:42841369-42841388 | None:intergenic | 40.0% | |
| CTATTGGATACACCCCAAAT+TGG | + | chr3_3:42841371-42841390 | None:intergenic | 40.0% | |
| CTACTACCTTTCCTTCTTCA+AGG | + | chr3_3:42841450-42841469 | None:intergenic | 40.0% | |
| AAGGTAGTAGACCAGAAGAA+AGG | - | chr3_3:42841460-42841479 | Msa0452940:intron | 40.0% | |
| GTCTGTCATATCCTTTCTTC+TGG | + | chr3_3:42841474-42841493 | None:intergenic | 40.0% | |
| GAAAGGATATGACAGACTTC+AGG | - | chr3_3:42841477-42841496 | Msa0452940:intron | 40.0% | |
| TTACGATTATCGCCACCTAT+AGG | - | chr3_3:42841592-42841611 | Msa0452940:intron | 40.0% | |
| AGGTAAACCCAAATACGAGA+AGG | - | chr3_3:42841612-42841631 | Msa0452940:intron | 40.0% | |
| GGTAAACCCAAATACGAGAA+GGG | - | chr3_3:42841613-42841632 | Msa0452940:intron | 40.0% | |
| TCTCTACCCTTCTCGTATTT+GGG | + | chr3_3:42841622-42841641 | None:intergenic | 40.0% | |
| ATCTCTACCCTTCTCGTATT+TGG | + | chr3_3:42841623-42841642 | None:intergenic | 40.0% | |
| !! | TCTGGTTATAAGGTTGGTGA+TGG | + | chr3_3:42841837-42841856 | None:intergenic | 40.0% |
| CATCATAACATTAAGACCCC+CGG | - | chr3_3:42841884-42841903 | Msa0452940:CDS | 40.0% | |
| !!! | TTATTTTTAATAGCGGCCGG+GGG | + | chr3_3:42841903-42841922 | None:intergenic | 40.0% |
| !!! | CTTATTTTTAATAGCGGCCG+GGG | + | chr3_3:42841904-42841923 | None:intergenic | 40.0% |
| !! | CGAGAAAGTTTTTGACTCAG+AGG | + | chr3_3:42842099-42842118 | None:intergenic | 40.0% |
| ATTAGATAAGGACAGAGGAG+AGG | + | chr3_3:42842245-42842264 | None:intergenic | 40.0% | |
| CTCCTCTGTCCTTATCTAAT+TGG | - | chr3_3:42842245-42842264 | Msa0452940:intron | 40.0% | |
| AGCCAATTAGATAAGGACAG+AGG | + | chr3_3:42842250-42842269 | None:intergenic | 40.0% | |
| ! | GTATCCGATTTTTCGCTCTA+TGG | - | chr3_3:42842502-42842521 | Msa0452940:CDS | 40.0% |
| TCCTCCATAGAGCGAAAAAT+CGG | + | chr3_3:42842509-42842528 | None:intergenic | 40.0% | |
| CTAGTAGCAAGAAGTTCAAG+AGG | + | chr3_3:42842548-42842567 | None:intergenic | 40.0% | |
| CTCTTGAACTTCTTGCTACT+AGG | - | chr3_3:42842546-42842565 | Msa0452940:CDS | 40.0% | |
| AGGAAATCAGCTTTCAAGAG+TGG | - | chr3_3:42842566-42842585 | Msa0452940:exon | 40.0% | |
| GTGGAAATAAGCTATCATGG+TGG | - | chr3_3:42842585-42842604 | Msa0452940:five_prime_UTR | 40.0% | |
| GATCAATGAGAGATGGGTAG+TGG | + | chr3_3:42839709-42839728 | None:intergenic | 45.0% | |
| CATTACTAACTGGCGGAACA+CGG | + | chr3_3:42840119-42840138 | None:intergenic | 45.0% | |
| ! | GAAAGGCATGGTGATCTAAG+TGG | - | chr3_3:42840283-42840302 | Msa0452940:intron | 45.0% |
| ! | AGGGAGAAACACCACTCTTT+TGG | - | chr3_3:42840437-42840456 | Msa0452940:intron | 45.0% |
| ! | GGGAGAAACACCACTCTTTT+GGG | - | chr3_3:42840438-42840457 | Msa0452940:intron | 45.0% |
| TTGGATACACCCCAAATTGG+GGG | + | chr3_3:42841368-42841387 | None:intergenic | 45.0% | |
| ! | TGGTTTGGCAGAAGCTTCAA+CGG | + | chr3_3:42841665-42841684 | None:intergenic | 45.0% |
| GTGGATGACACCTTGTTGAT+TGG | + | chr3_3:42841783-42841802 | None:intergenic | 45.0% | |
| CAGAATTCTCCTTCCAACGA+GGG | + | chr3_3:42841956-42841975 | None:intergenic | 45.0% | |
| TGGAAGGAGAATTCTGCTGT+TGG | - | chr3_3:42841960-42841979 | Msa0452940:CDS | 45.0% | |
| GGAAGGAGAATTCTGCTGTT+GGG | - | chr3_3:42841961-42841980 | Msa0452940:CDS | 45.0% | |
| TTTGCCATACCTGTTGCACA+TGG | + | chr3_3:42842467-42842486 | None:intergenic | 45.0% | |
| ! | TCCGATTTTTCGCTCTATGG+AGG | - | chr3_3:42842505-42842524 | Msa0452940:CDS | 45.0% |
| !! | TAAAAATAAAAAAATTAGTA+AGG | + | chr3_3:42840907-42840926 | None:intergenic | 5.0% |
| CGTGTTCCGCCAGTTAGTAA+TGG | - | chr3_3:42840117-42840136 | Msa0452940:intron | 50.0% | |
| ! | TGGAATGTGATGGAGTGGGA+TGG | - | chr3_3:42841225-42841244 | Msa0452940:intron | 50.0% |
| ! | TGTGATGGAGTGGGATGGAA+TGG | - | chr3_3:42841230-42841249 | Msa0452940:intron | 50.0% |
| TTGGGGGGAATGAAAAGTGG+AGG | + | chr3_3:42841352-42841371 | None:intergenic | 50.0% | |
| TGGATACACCCCAAATTGGG+GGG | + | chr3_3:42841367-42841386 | None:intergenic | 50.0% | |
| ACATGCGGGAACCTTGAAGA+AGG | - | chr3_3:42841436-42841455 | Msa0452940:intron | 50.0% | |
| CGGGAACCTTGAAGAAGGAA+AGG | - | chr3_3:42841441-42841460 | Msa0452940:intron | 50.0% | |
| ! | GTTTTTCTATGGGGGTCGCT+TGG | + | chr3_3:42841507-42841526 | None:intergenic | 50.0% |
| GCAGAATTCTCCTTCCAACG+AGG | + | chr3_3:42841957-42841976 | None:intergenic | 50.0% | |
| ATCTACGTGCCATGTGCAAC+AGG | - | chr3_3:42842455-42842474 | Msa0452940:CDS | 50.0% | |
| CGCTCTATGGAGGACAAACA+TGG | - | chr3_3:42842515-42842534 | Msa0452940:CDS | 50.0% | |
| GCAAGCACAGCCCAAAAGAG+TGG | + | chr3_3:42840451-42840470 | None:intergenic | 55.0% | |
| CGTGCCATGTGCAACAGGTA+TGG | - | chr3_3:42842460-42842479 | Msa0452940:CDS | 55.0% | |
| TTCCAACGAGGGCCCCGTTA+AGG | + | chr3_3:42841945-42841964 | None:intergenic | 60.0% | |
| TTAACGGGGCCCTCGTTGGA+AGG | - | chr3_3:42841944-42841963 | Msa0452940:CDS | 60.0% | |
| CACCTTAACGGGGCCCTCGT+TGG | - | chr3_3:42841940-42841959 | Msa0452940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 42839706 | 42842634 | 42839706 | ID=Msa0452940;Name=Msa0452940 |
| chr3_3 | mRNA | 42839706 | 42842634 | 42839706 | ID=Msa0452940-mRNA-1;Parent=Msa0452940;Name=Msa0452940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=61|1|0.66|1|1|1|3|0|250 |
| chr3_3 | exon | 42839706 | 42839863 | 42839706 | ID=Msa0452940-mRNA-1:exon:7734;Parent=Msa0452940-mRNA-1 |
| chr3_3 | exon | 42841754 | 42842227 | 42841754 | ID=Msa0452940-mRNA-1:exon:7733;Parent=Msa0452940-mRNA-1 |
| chr3_3 | exon | 42842453 | 42842634 | 42842453 | ID=Msa0452940-mRNA-1:exon:7732;Parent=Msa0452940-mRNA-1 |
| chr3_3 | five_prime_UTR | 42842574 | 42842634 | 42842574 | ID=Msa0452940-mRNA-1:five_prime_utr;Parent=Msa0452940-mRNA-1 |
| chr3_3 | CDS | 42842453 | 42842573 | 42842453 | ID=Msa0452940-mRNA-1:cds;Parent=Msa0452940-mRNA-1 |
| chr3_3 | CDS | 42841754 | 42842227 | 42841754 | ID=Msa0452940-mRNA-1:cds;Parent=Msa0452940-mRNA-1 |
| chr3_3 | CDS | 42839706 | 42839863 | 42839706 | ID=Msa0452940-mRNA-1:cds;Parent=Msa0452940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
