Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414450 | XP_013460446.1 | 90.351 | 114 | 3 | 1 | 1 | 106 | 1 | 114 | 2.94e-68 | 210 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414450 | sp|Q03461|NLTP2_TOBAC | 38.938 | 113 | 60 | 4 | 1 | 106 | 4 | 114 | 8.76e-19 | 77.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414450 | B7FGR3 | 90.351 | 114 | 3 | 1 | 1 | 106 | 1 | 114 | 1.40e-68 | 210 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0366470 | Msa0414450 | 0.902102 | 1.366062e-78 | -8.615850e-47 |
| Msa0414450 | Msa0459270 | 0.855058 | 8.139732e-62 | -8.615850e-47 |
| Msa0414450 | Msa0506230 | 0.923205 | 3.608099e-89 | -8.615850e-47 |
| Msa0414450 | Msa0544930 | 0.806086 | 9.755618e-50 | -8.615850e-47 |
| Msa0414450 | Msa0589610 | 0.807354 | 5.266588e-50 | -8.615850e-47 |
| Msa0414450 | Msa0839480 | 0.804514 | 2.082715e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0414450 | MtrunA17_Chr3g0107481 | 90.351 | 114 | 3 | 1 | 1 | 106 | 1 | 114 | 2.70e-72 | 210 |
| Msa0414450 | MtrunA17_Chr4g0013261 | 30.357 | 112 | 70 | 1 | 3 | 106 | 5 | 116 | 1.56e-15 | 66.6 |
| Msa0414450 | MtrunA17_Chr4g0013251 | 31.250 | 112 | 69 | 1 | 3 | 106 | 5 | 116 | 5.59e-15 | 65.5 |
| Msa0414450 | MtrunA17_Chr4g0013001 | 32.143 | 112 | 67 | 2 | 3 | 106 | 5 | 115 | 2.63e-13 | 60.8 |
| Msa0414450 | MtrunA17_Chr4g0012961 | 31.250 | 112 | 68 | 2 | 3 | 106 | 5 | 115 | 5.78e-13 | 60.1 |
| Msa0414450 | MtrunA17_Chr7g0244831 | 30.275 | 109 | 67 | 1 | 7 | 106 | 11 | 119 | 7.67e-13 | 60.1 |
| Msa0414450 | MtrunA17_Chr4g0012951 | 32.743 | 113 | 65 | 3 | 3 | 106 | 5 | 115 | 1.62e-12 | 58.9 |
| Msa0414450 | MtrunA17_Chr4g0012991 | 32.143 | 112 | 67 | 2 | 3 | 106 | 60 | 170 | 3.97e-12 | 59.3 |
| Msa0414450 | MtrunA17_Chr4g0012901 | 28.319 | 113 | 72 | 1 | 3 | 106 | 9 | 121 | 6.31e-11 | 55.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 32 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAACGATCTGGTGAATTTC+TGG | 0.174462 | 3_2:+59983130 | Msa0414450:three_prime_UTR |
| TAGTTGTTTGCTCACATGTT+AGG | 0.273137 | 3_2:-59982196 | None:intergenic |
| CTGGAAGATTATTCATTCTA+TGG | 0.285035 | 3_2:+59983039 | Msa0414450:three_prime_UTR |
| AGTTGCATGCCATTGCATTC+AGG | 0.362920 | 3_2:+59982331 | Msa0414450:CDS |
| TGCATACCCTATGGAATGTT+GGG | 0.441117 | 3_2:+59982233 | Msa0414450:CDS |
| AGTTGTTTGCTCACATGTTA+GGG | 0.442335 | 3_2:-59982195 | None:intergenic |
| TTCGAGTATAATCAATCAAA+GGG | 0.448333 | 3_2:-59982370 | None:intergenic |
| ATGCCATTGCATTCAGGATA+CGG | 0.461881 | 3_2:+59982337 | Msa0414450:CDS |
| ATCAATTATCAAATAGTGAA+AGG | 0.476965 | 3_2:-59983188 | None:intergenic |
| TGATCGTATATGTAACGATC+TGG | 0.493714 | 3_2:+59983119 | Msa0414450:three_prime_UTR |
| ATGCATACCCTATGGAATGT+TGG | 0.496045 | 3_2:+59982232 | Msa0414450:CDS |
| TTGTTACTAGTAGCTAGTGC+TGG | 0.502388 | 3_2:+59983020 | Msa0414450:three_prime_UTR |
| ATAAATGCTGCATACAAGAA+TGG | 0.504762 | 3_2:+59982296 | Msa0414450:CDS |
| CTAACTCCATGCATACCCTA+TGG | 0.507572 | 3_2:+59982224 | Msa0414450:CDS |
| TACTTATTGCAATCAGTGGA+GGG | 0.513169 | 3_2:-59982443 | None:intergenic |
| AGTGGAGGGGTAAACTTTGA+AGG | 0.513675 | 3_2:-59982429 | None:intergenic |
| ATTCGAGTATAATCAATCAA+AGG | 0.524459 | 3_2:-59982371 | None:intergenic |
| TCAATTATCAAATAGTGAAA+GGG | 0.528436 | 3_2:-59983187 | None:intergenic |
| AACAAATAGTCTTGCTCTCG+AGG | 0.528711 | 3_2:-59983002 | None:intergenic |
| AACATTCCATAGGGTATGCA+TGG | 0.530105 | 3_2:-59982230 | None:intergenic |
| GGCTTACTTATTGCAATCAG+TGG | 0.540723 | 3_2:-59982447 | None:intergenic |
| ACTTCCTCCCAACATTCCAT+AGG | 0.556549 | 3_2:-59982240 | None:intergenic |
| TATACTCGAATTAATCAACT+TGG | 0.560190 | 3_2:+59982383 | Msa0414450:CDS |
| TTACTTATTGCAATCAGTGG+AGG | 0.569382 | 3_2:-59982444 | None:intergenic |
| CAGGGTGAAGTAAGCAGCAA+AGG | 0.583626 | 3_2:+59982967 | Msa0414450:intron |
| AATCAACTTGGTGACCTATG+TGG | 0.587360 | 3_2:+59982395 | Msa0414450:CDS |
| CTTCCTCCCAACATTCCATA+GGG | 0.593020 | 3_2:-59982239 | None:intergenic |
| AGGGACATTTAGATCCACAT+AGG | 0.605617 | 3_2:-59982409 | None:intergenic |
| CAGCCGTATCCTGAATGCAA+TGG | 0.607586 | 3_2:-59982340 | None:intergenic |
| ACTTATTGCAATCAGTGGAG+GGG | 0.616402 | 3_2:-59982442 | None:intergenic |
| GTGGAGGGGTAAACTTTGAA+GGG | 0.636043 | 3_2:-59982428 | None:intergenic |
| ATACCCTATGGAATGTTGGG+AGG | 0.689160 | 3_2:+59982236 | Msa0414450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTACTTGGTTTGTTTTT+AGG | + | chr3_2:59982511-59982530 | Msa0414450:intron | 20.0% |
| !!! | AATTTTAACTTCTTAACTTG+TGG | + | chr3_2:59982633-59982652 | Msa0414450:intron | 20.0% |
| !! | ATGATTTATTTGATTCATCT+TGG | + | chr3_2:59982781-59982800 | Msa0414450:intron | 20.0% |
| !! | TTACATCAAAATCCATAATT+AGG | - | chr3_2:59982942-59982961 | None:intergenic | 20.0% |
| !!! | TATTTACTTGGTTTGTTTTT+AGG | + | chr3_2:59982511-59982530 | Msa0414450:intron | 20.0% |
| !!! | AATTTTAACTTCTTAACTTG+TGG | + | chr3_2:59982633-59982652 | Msa0414450:intron | 20.0% |
| !! | ATGATTTATTTGATTCATCT+TGG | + | chr3_2:59982781-59982800 | Msa0414450:intron | 20.0% |
| !! | TTACATCAAAATCCATAATT+AGG | - | chr3_2:59982942-59982961 | None:intergenic | 20.0% |
| !!! | GGTTGCATTATTTATTTTGA+TGG | + | chr3_2:59982136-59982155 | Msa0414450:CDS | 25.0% |
| ! | TTCGAGTATAATCAATCAAA+GGG | - | chr3_2:59982373-59982392 | None:intergenic | 25.0% |
| ! | ATTCGAGTATAATCAATCAA+AGG | - | chr3_2:59982374-59982393 | None:intergenic | 25.0% |
| ! | TATACTCGAATTAATCAACT+TGG | + | chr3_2:59982383-59982402 | Msa0414450:CDS | 25.0% |
| ! | AACCAAGTAAATAGAAAAGT+TGG | - | chr3_2:59982504-59982523 | None:intergenic | 25.0% |
| !! | TTTTGTGCTAATTAACCTAA+AGG | - | chr3_2:59982682-59982701 | None:intergenic | 25.0% |
| ! | TACAAATCGAAGAGAAAATA+TGG | - | chr3_2:59982855-59982874 | None:intergenic | 25.0% |
| ! | TAGCAAACATATCCTAATTA+TGG | + | chr3_2:59982927-59982946 | Msa0414450:intron | 25.0% |
| !!! | GGTTGCATTATTTATTTTGA+TGG | + | chr3_2:59982136-59982155 | Msa0414450:CDS | 25.0% |
| ! | TTCGAGTATAATCAATCAAA+GGG | - | chr3_2:59982373-59982392 | None:intergenic | 25.0% |
| ! | ATTCGAGTATAATCAATCAA+AGG | - | chr3_2:59982374-59982393 | None:intergenic | 25.0% |
| ! | TATACTCGAATTAATCAACT+TGG | + | chr3_2:59982383-59982402 | Msa0414450:CDS | 25.0% |
| ! | AACCAAGTAAATAGAAAAGT+TGG | - | chr3_2:59982504-59982523 | None:intergenic | 25.0% |
| !! | TTTTGTGCTAATTAACCTAA+AGG | - | chr3_2:59982682-59982701 | None:intergenic | 25.0% |
| ! | TACAAATCGAAGAGAAAATA+TGG | - | chr3_2:59982855-59982874 | None:intergenic | 25.0% |
| ! | TAGCAAACATATCCTAATTA+TGG | + | chr3_2:59982927-59982946 | Msa0414450:intron | 25.0% |
| CATTTATAGAGTGAATACCT+TGG | - | chr3_2:59982283-59982302 | None:intergenic | 30.0% | |
| ATAAATGCTGCATACAAGAA+TGG | + | chr3_2:59982296-59982315 | Msa0414450:CDS | 30.0% | |
| ! | GTCCAACTTTTCTATTTACT+TGG | + | chr3_2:59982499-59982518 | Msa0414450:intron | 30.0% |
| !!! | TTGGTTTGTTTTTAGGTCAA+GGG | + | chr3_2:59982518-59982537 | Msa0414450:intron | 30.0% |
| ! | TCATGCTAACTTTTGTCTTT+GGG | - | chr3_2:59982659-59982678 | None:intergenic | 30.0% |
| ! | TCGATTTGTAAAGCTTATAG+AGG | + | chr3_2:59982865-59982884 | Msa0414450:intron | 30.0% |
| CTGGAAGATTATTCATTCTA+TGG | + | chr3_2:59983039-59983058 | Msa0414450:three_prime_UTR | 30.0% | |
| CATTTATAGAGTGAATACCT+TGG | - | chr3_2:59982283-59982302 | None:intergenic | 30.0% | |
| ATAAATGCTGCATACAAGAA+TGG | + | chr3_2:59982296-59982315 | Msa0414450:CDS | 30.0% | |
| ! | GTCCAACTTTTCTATTTACT+TGG | + | chr3_2:59982499-59982518 | Msa0414450:intron | 30.0% |
| !!! | TTGGTTTGTTTTTAGGTCAA+GGG | + | chr3_2:59982518-59982537 | Msa0414450:intron | 30.0% |
| ! | TCATGCTAACTTTTGTCTTT+GGG | - | chr3_2:59982659-59982678 | None:intergenic | 30.0% |
| ! | TCGATTTGTAAAGCTTATAG+AGG | + | chr3_2:59982865-59982884 | Msa0414450:intron | 30.0% |
| CTGGAAGATTATTCATTCTA+TGG | + | chr3_2:59983039-59983058 | Msa0414450:three_prime_UTR | 30.0% | |
| AGTTGTTTGCTCACATGTTA+GGG | - | chr3_2:59982198-59982217 | None:intergenic | 35.0% | |
| TAGTTGTTTGCTCACATGTT+AGG | - | chr3_2:59982199-59982218 | None:intergenic | 35.0% | |
| TACTTATTGCAATCAGTGGA+GGG | - | chr3_2:59982446-59982465 | None:intergenic | 35.0% | |
| TTACTTATTGCAATCAGTGG+AGG | - | chr3_2:59982447-59982466 | None:intergenic | 35.0% | |
| ACTAGTGTTACAAAGAGAGA+AGG | - | chr3_2:59982471-59982490 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTGTTTTTAGGTCA+AGG | + | chr3_2:59982517-59982536 | Msa0414450:intron | 35.0% |
| ATTTCTTATCTTGTGCCCTA+GGG | - | chr3_2:59982559-59982578 | None:intergenic | 35.0% | |
| TATTTCTTATCTTGTGCCCT+AGG | - | chr3_2:59982560-59982579 | None:intergenic | 35.0% | |
| ! | GTCATGCTAACTTTTGTCTT+TGG | - | chr3_2:59982660-59982679 | None:intergenic | 35.0% |
| CAAAAGTTAGCATGACCTTT+AGG | + | chr3_2:59982664-59982683 | Msa0414450:intron | 35.0% | |
| TGCAACTGTTTAGACCATAA+TGG | - | chr3_2:59982728-59982747 | None:intergenic | 35.0% | |
| !! | GATTTTGATGTAATTGCGCA+GGG | + | chr3_2:59982949-59982968 | Msa0414450:intron | 35.0% |
| TGATCGTATATGTAACGATC+TGG | + | chr3_2:59983119-59983138 | Msa0414450:three_prime_UTR | 35.0% | |
| AGTTGTTTGCTCACATGTTA+GGG | - | chr3_2:59982198-59982217 | None:intergenic | 35.0% | |
| TAGTTGTTTGCTCACATGTT+AGG | - | chr3_2:59982199-59982218 | None:intergenic | 35.0% | |
| TACTTATTGCAATCAGTGGA+GGG | - | chr3_2:59982446-59982465 | None:intergenic | 35.0% | |
| TTACTTATTGCAATCAGTGG+AGG | - | chr3_2:59982447-59982466 | None:intergenic | 35.0% | |
| ACTAGTGTTACAAAGAGAGA+AGG | - | chr3_2:59982471-59982490 | None:intergenic | 35.0% | |
| !!! | CTTGGTTTGTTTTTAGGTCA+AGG | + | chr3_2:59982517-59982536 | Msa0414450:intron | 35.0% |
| ATTTCTTATCTTGTGCCCTA+GGG | - | chr3_2:59982559-59982578 | None:intergenic | 35.0% | |
| TATTTCTTATCTTGTGCCCT+AGG | - | chr3_2:59982560-59982579 | None:intergenic | 35.0% | |
| ! | GTCATGCTAACTTTTGTCTT+TGG | - | chr3_2:59982660-59982679 | None:intergenic | 35.0% |
| CAAAAGTTAGCATGACCTTT+AGG | + | chr3_2:59982664-59982683 | Msa0414450:intron | 35.0% | |
| TGCAACTGTTTAGACCATAA+TGG | - | chr3_2:59982728-59982747 | None:intergenic | 35.0% | |
| !! | GATTTTGATGTAATTGCGCA+GGG | + | chr3_2:59982949-59982968 | Msa0414450:intron | 35.0% |
| TGATCGTATATGTAACGATC+TGG | + | chr3_2:59983119-59983138 | Msa0414450:three_prime_UTR | 35.0% | |
| AACATTCCATAGGGTATGCA+TGG | - | chr3_2:59982233-59982252 | None:intergenic | 40.0% | |
| ATGCATACCCTATGGAATGT+TGG | + | chr3_2:59982232-59982251 | Msa0414450:CDS | 40.0% | |
| TGCATACCCTATGGAATGTT+GGG | + | chr3_2:59982233-59982252 | Msa0414450:CDS | 40.0% | |
| TGAATACCTTGGCAACACAA+GGG | - | chr3_2:59982272-59982291 | None:intergenic | 40.0% | |
| ATGCCATTGCATTCAGGATA+CGG | + | chr3_2:59982337-59982356 | Msa0414450:CDS | 40.0% | |
| ! | AATCAACTTGGTGACCTATG+TGG | + | chr3_2:59982395-59982414 | Msa0414450:CDS | 40.0% |
| AGGGACATTTAGATCCACAT+AGG | - | chr3_2:59982412-59982431 | None:intergenic | 40.0% | |
| ACTTATTGCAATCAGTGGAG+GGG | - | chr3_2:59982445-59982464 | None:intergenic | 40.0% | |
| GGCTTACTTATTGCAATCAG+TGG | - | chr3_2:59982450-59982469 | None:intergenic | 40.0% | |
| AGATCTTTACCGCACCATTA+TGG | + | chr3_2:59982711-59982730 | Msa0414450:intron | 40.0% | |
| CTGTTTAGACCATAATGGTG+CGG | - | chr3_2:59982723-59982742 | None:intergenic | 40.0% | |
| ATGGTCTAAACAGTTGCATG+TGG | + | chr3_2:59982730-59982749 | Msa0414450:intron | 40.0% | |
| AACAGTTGCATGTGGATACT+CGG | + | chr3_2:59982738-59982757 | Msa0414450:intron | 40.0% | |
| !! | GGATTTTGATGTAATTGCGC+AGG | + | chr3_2:59982948-59982967 | Msa0414450:intron | 40.0% |
| ! | AACAAATAGTCTTGCTCTCG+AGG | - | chr3_2:59983005-59983024 | None:intergenic | 40.0% |
| TTGTTACTAGTAGCTAGTGC+TGG | + | chr3_2:59983020-59983039 | Msa0414450:three_prime_UTR | 40.0% | |
| GTAACGATCTGGTGAATTTC+TGG | + | chr3_2:59983130-59983149 | Msa0414450:three_prime_UTR | 40.0% | |
| AACATTCCATAGGGTATGCA+TGG | - | chr3_2:59982233-59982252 | None:intergenic | 40.0% | |
| ATGCATACCCTATGGAATGT+TGG | + | chr3_2:59982232-59982251 | Msa0414450:CDS | 40.0% | |
| TGCATACCCTATGGAATGTT+GGG | + | chr3_2:59982233-59982252 | Msa0414450:CDS | 40.0% | |
| TGAATACCTTGGCAACACAA+GGG | - | chr3_2:59982272-59982291 | None:intergenic | 40.0% | |
| ATGCCATTGCATTCAGGATA+CGG | + | chr3_2:59982337-59982356 | Msa0414450:CDS | 40.0% | |
| ! | AATCAACTTGGTGACCTATG+TGG | + | chr3_2:59982395-59982414 | Msa0414450:CDS | 40.0% |
| AGGGACATTTAGATCCACAT+AGG | - | chr3_2:59982412-59982431 | None:intergenic | 40.0% | |
| ACTTATTGCAATCAGTGGAG+GGG | - | chr3_2:59982445-59982464 | None:intergenic | 40.0% | |
| GGCTTACTTATTGCAATCAG+TGG | - | chr3_2:59982450-59982469 | None:intergenic | 40.0% | |
| AGATCTTTACCGCACCATTA+TGG | + | chr3_2:59982711-59982730 | Msa0414450:intron | 40.0% | |
| CTGTTTAGACCATAATGGTG+CGG | - | chr3_2:59982723-59982742 | None:intergenic | 40.0% | |
| ATGGTCTAAACAGTTGCATG+TGG | + | chr3_2:59982730-59982749 | Msa0414450:intron | 40.0% | |
| AACAGTTGCATGTGGATACT+CGG | + | chr3_2:59982738-59982757 | Msa0414450:intron | 40.0% | |
| !! | GGATTTTGATGTAATTGCGC+AGG | + | chr3_2:59982948-59982967 | Msa0414450:intron | 40.0% |
| ! | AACAAATAGTCTTGCTCTCG+AGG | - | chr3_2:59983005-59983024 | None:intergenic | 40.0% |
| TTGTTACTAGTAGCTAGTGC+TGG | + | chr3_2:59983020-59983039 | Msa0414450:three_prime_UTR | 40.0% | |
| GTAACGATCTGGTGAATTTC+TGG | + | chr3_2:59983130-59983149 | Msa0414450:three_prime_UTR | 40.0% | |
| CTAACTCCATGCATACCCTA+TGG | + | chr3_2:59982224-59982243 | Msa0414450:CDS | 45.0% | |
| ATACCCTATGGAATGTTGGG+AGG | + | chr3_2:59982236-59982255 | Msa0414450:CDS | 45.0% | |
| CTTCCTCCCAACATTCCATA+GGG | - | chr3_2:59982242-59982261 | None:intergenic | 45.0% | |
| ACTTCCTCCCAACATTCCAT+AGG | - | chr3_2:59982243-59982262 | None:intergenic | 45.0% | |
| GTGAATACCTTGGCAACACA+AGG | - | chr3_2:59982273-59982292 | None:intergenic | 45.0% | |
| AGTTGCATGCCATTGCATTC+AGG | + | chr3_2:59982331-59982350 | Msa0414450:CDS | 45.0% | |
| GTGGAGGGGTAAACTTTGAA+GGG | - | chr3_2:59982431-59982450 | None:intergenic | 45.0% | |
| AGTGGAGGGGTAAACTTTGA+AGG | - | chr3_2:59982432-59982451 | None:intergenic | 45.0% | |
| AAATGCTACCTTGTGCCCTA+GGG | + | chr3_2:59982541-59982560 | Msa0414450:intron | 45.0% | |
| CTAACTCCATGCATACCCTA+TGG | + | chr3_2:59982224-59982243 | Msa0414450:CDS | 45.0% | |
| ATACCCTATGGAATGTTGGG+AGG | + | chr3_2:59982236-59982255 | Msa0414450:CDS | 45.0% | |
| CTTCCTCCCAACATTCCATA+GGG | - | chr3_2:59982242-59982261 | None:intergenic | 45.0% | |
| ACTTCCTCCCAACATTCCAT+AGG | - | chr3_2:59982243-59982262 | None:intergenic | 45.0% | |
| GTGAATACCTTGGCAACACA+AGG | - | chr3_2:59982273-59982292 | None:intergenic | 45.0% | |
| AGTTGCATGCCATTGCATTC+AGG | + | chr3_2:59982331-59982350 | Msa0414450:CDS | 45.0% | |
| GTGGAGGGGTAAACTTTGAA+GGG | - | chr3_2:59982431-59982450 | None:intergenic | 45.0% | |
| AGTGGAGGGGTAAACTTTGA+AGG | - | chr3_2:59982432-59982451 | None:intergenic | 45.0% | |
| AAATGCTACCTTGTGCCCTA+GGG | + | chr3_2:59982541-59982560 | Msa0414450:intron | 45.0% | |
| !!! | TTTATTTTATTTTTTCTATT+TGG | - | chr3_2:59983093-59983112 | None:intergenic | 5.0% |
| !!! | TTTATTTTATTTTTTCTATT+TGG | - | chr3_2:59983093-59983112 | None:intergenic | 5.0% |
| GTATCACCCTTGTGTTGCCA+AGG | + | chr3_2:59982263-59982282 | Msa0414450:intron | 50.0% | |
| CAGCCGTATCCTGAATGCAA+TGG | - | chr3_2:59982343-59982362 | None:intergenic | 50.0% | |
| GAAATGCTACCTTGTGCCCT+AGG | + | chr3_2:59982540-59982559 | Msa0414450:intron | 50.0% | |
| CAGGGTGAAGTAAGCAGCAA+AGG | + | chr3_2:59982967-59982986 | Msa0414450:intron | 50.0% | |
| GTATCACCCTTGTGTTGCCA+AGG | + | chr3_2:59982263-59982282 | Msa0414450:intron | 50.0% | |
| CAGCCGTATCCTGAATGCAA+TGG | - | chr3_2:59982343-59982362 | None:intergenic | 50.0% | |
| GAAATGCTACCTTGTGCCCT+AGG | + | chr3_2:59982540-59982559 | Msa0414450:intron | 50.0% | |
| CAGGGTGAAGTAAGCAGCAA+AGG | + | chr3_2:59982967-59982986 | Msa0414450:intron | 50.0% | |
| ATCTTGTGCCCTAGGGCACA+AGG | - | chr3_2:59982552-59982571 | None:intergenic | 55.0% | |
| ATCTTGTGCCCTAGGGCACA+AGG | - | chr3_2:59982552-59982571 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 59982128 | 59983201 | 59982128 | ID=Msa0414450;Name=Msa0414450 |
| chr3_2 | mRNA | 59982128 | 59983201 | 59982128 | ID=Msa0414450-mRNA-1;Parent=Msa0414450;Name=Msa0414450-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|0.5|0.33|1|0|0|3|222|106 |
| chr3_2 | exon | 59982128 | 59982260 | 59982128 | ID=Msa0414450-mRNA-1:exon:12465;Parent=Msa0414450-mRNA-1 |
| chr3_2 | exon | 59982285 | 59982462 | 59982285 | ID=Msa0414450-mRNA-1:exon:12466;Parent=Msa0414450-mRNA-1 |
| chr3_2 | exon | 59982970 | 59983201 | 59982970 | ID=Msa0414450-mRNA-1:exon:12467;Parent=Msa0414450-mRNA-1 |
| chr3_2 | CDS | 59982128 | 59982260 | 59982128 | ID=Msa0414450-mRNA-1:cds;Parent=Msa0414450-mRNA-1 |
| chr3_2 | CDS | 59982285 | 59982462 | 59982285 | ID=Msa0414450-mRNA-1:cds;Parent=Msa0414450-mRNA-1 |
| chr3_2 | CDS | 59982970 | 59982979 | 59982970 | ID=Msa0414450-mRNA-1:cds;Parent=Msa0414450-mRNA-1 |
| chr3_2 | three_prime_UTR | 59982980 | 59983201 | 59982980 | ID=Msa0414450-mRNA-1:three_prime_utr;Parent=Msa0414450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
