Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459270 | XP_013460446.1 | 90.179 | 112 | 3 | 1 | 1 | 104 | 1 | 112 | 3.87e-66 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459270 | sp|Q03461|NLTP2_TOBAC | 38.938 | 113 | 60 | 4 | 1 | 106 | 4 | 114 | 9.41e-18 | 76.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459270 | B7FGR3 | 90.179 | 112 | 3 | 1 | 1 | 104 | 1 | 112 | 1.85e-66 | 206 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101650 | Msa0459270 | 0.812001 | 5.279277e-51 | -8.615850e-47 |
| Msa0104360 | Msa0459270 | 0.805825 | 1.107373e-49 | -8.615850e-47 |
| Msa0104390 | Msa0459270 | 0.800449 | 1.434035e-48 | -8.615850e-47 |
| Msa0232860 | Msa0459270 | 0.822173 | 2.729542e-53 | -8.615850e-47 |
| Msa0366470 | Msa0459270 | 0.888249 | 6.982945e-73 | -8.615850e-47 |
| Msa0414450 | Msa0459270 | 0.855058 | 8.139732e-62 | -8.615850e-47 |
| Msa0459270 | Msa0506230 | 0.915250 | 7.359782e-85 | -8.615850e-47 |
| Msa0459270 | Msa0752580 | 0.804703 | 1.901742e-49 | -8.615850e-47 |
| Msa0459270 | Msa1200960 | 0.825274 | 5.126730e-54 | -8.615850e-47 |
| Msa0459270 | Msa1253970 | 0.830581 | 2.709275e-55 | -8.615850e-47 |
| Msa0459270 | Msa1272130 | 0.800222 | 1.594789e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459270 | MtrunA17_Chr3g0107481 | 90.179 | 112 | 3 | 1 | 1 | 104 | 1 | 112 | 3.56e-70 | 206 |
| Msa0459270 | MtrunA17_Chr4g0013261 | 30.909 | 110 | 68 | 1 | 3 | 104 | 5 | 114 | 1.33e-14 | 65.5 |
| Msa0459270 | MtrunA17_Chr4g0013251 | 32.727 | 110 | 66 | 1 | 3 | 104 | 5 | 114 | 3.77e-14 | 64.3 |
| Msa0459270 | MtrunA17_Chr4g0013001 | 34.259 | 108 | 62 | 2 | 3 | 102 | 5 | 111 | 1.01e-12 | 60.5 |
| Msa0459270 | MtrunA17_Chr4g0012961 | 33.333 | 108 | 63 | 2 | 3 | 102 | 5 | 111 | 1.94e-12 | 59.7 |
| Msa0459270 | MtrunA17_Chr4g0012991 | 34.259 | 108 | 62 | 2 | 3 | 102 | 60 | 166 | 4.38e-12 | 60.1 |
| Msa0459270 | MtrunA17_Chr4g0012951 | 33.945 | 109 | 61 | 3 | 3 | 102 | 5 | 111 | 1.20e-11 | 57.8 |
| Msa0459270 | MtrunA17_Chr7g0244831 | 29.907 | 107 | 66 | 1 | 7 | 104 | 11 | 117 | 2.40e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTGTTTGCTCACATGTT+AGG | 0.273137 | 3_3:-55761972 | None:intergenic |
| AGTGCTGGAAGATTATTCTA+TGG | 0.437007 | 3_3:+55762851 | Msa0459270:CDS |
| TGCATACCCTATGGAATGTT+GGG | 0.441117 | 3_3:+55762009 | Msa0459270:CDS |
| AGTTGTTTGCTCACATGTTA+GGG | 0.442335 | 3_3:-55761971 | None:intergenic |
| TTCGAGTATAATCAATCAAA+GGG | 0.448333 | 3_3:-55762146 | None:intergenic |
| TTGTTACCAGTAGCTAGTGC+TGG | 0.483688 | 3_3:+55762836 | Msa0459270:CDS |
| ATGCATACCCTATGGAATGT+TGG | 0.496045 | 3_3:+55762008 | Msa0459270:CDS |
| ATGCCATTGCATTCAAGATA+CGG | 0.502113 | 3_3:+55762113 | Msa0459270:CDS |
| ATAAATGCTGCATATAAGAA+TGG | 0.504762 | 3_3:+55762072 | Msa0459270:CDS |
| CTAACTCCATGCATACCCTA+TGG | 0.507572 | 3_3:+55762000 | Msa0459270:CDS |
| TACTTATTGCAATCAGTGGA+GGG | 0.513169 | 3_3:-55762219 | None:intergenic |
| AGTGGAGGGGTAAACTTTGA+AGG | 0.513675 | 3_3:-55762205 | None:intergenic |
| ATTCGAGTATAATCAATCAA+AGG | 0.524459 | 3_3:-55762147 | None:intergenic |
| AATCTTCCAGCACTAGCTAC+TGG | 0.526580 | 3_3:-55762842 | None:intergenic |
| AACAAATAGTCTTGCTCTCG+AGG | 0.528711 | 3_3:-55762818 | None:intergenic |
| AACATTCCATAGGGTATGCA+TGG | 0.530105 | 3_3:-55762006 | None:intergenic |
| GGCTTACTTATTGCAATCAG+TGG | 0.540723 | 3_3:-55762223 | None:intergenic |
| CAGCCGTATCTTGAATGCAA+TGG | 0.548360 | 3_3:-55762116 | None:intergenic |
| TATACTCGAATTAATCAACT+TGG | 0.560190 | 3_3:+55762159 | Msa0459270:CDS |
| TTACTTATTGCAATCAGTGG+AGG | 0.569382 | 3_3:-55762220 | None:intergenic |
| ACTCCCTCCCAACATTCCAT+AGG | 0.570029 | 3_3:-55762016 | None:intergenic |
| CTCCCTCCCAACATTCCATA+GGG | 0.578201 | 3_3:-55762015 | None:intergenic |
| CAGGGTGAAGTAAGCAGCAA+AGG | 0.583626 | 3_3:+55762783 | Msa0459270:intron |
| TACCCTATGGAATGTTGGGA+GGG | 0.587169 | 3_3:+55762013 | Msa0459270:CDS |
| AATCAACTTGGTGACCTATG+TGG | 0.587360 | 3_3:+55762171 | Msa0459270:CDS |
| AGGGACATTTAGATCCACAT+AGG | 0.605617 | 3_3:-55762185 | None:intergenic |
| ACTTATTGCAATCAGTGGAG+GGG | 0.616402 | 3_3:-55762218 | None:intergenic |
| GTGGAGGGGTAAACTTTGAA+GGG | 0.636043 | 3_3:-55762204 | None:intergenic |
| ATACCCTATGGAATGTTGGG+AGG | 0.662835 | 3_3:+55762012 | Msa0459270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTACTTGGTTTGTTTTT+AGG | + | chr3_3:55762285-55762304 | Msa0459270:intron | 20.0% |
| !! | ATGATTTATTTGATTCATGT+TGG | + | chr3_3:55762596-55762615 | Msa0459270:intron | 20.0% |
| !! | CTATAATTGAAGAGAAAATA+TGG | - | chr3_3:55762670-55762689 | None:intergenic | 20.0% |
| !! | TTACATCAAAATCCATAATT+AGG | - | chr3_3:55762758-55762777 | None:intergenic | 20.0% |
| !!! | TATTTACTTGGTTTGTTTTT+AGG | + | chr3_3:55762285-55762304 | Msa0459270:intron | 20.0% |
| !! | ATGATTTATTTGATTCATGT+TGG | + | chr3_3:55762596-55762615 | Msa0459270:intron | 20.0% |
| !! | CTATAATTGAAGAGAAAATA+TGG | - | chr3_3:55762670-55762689 | None:intergenic | 20.0% |
| !! | TTACATCAAAATCCATAATT+AGG | - | chr3_3:55762758-55762777 | None:intergenic | 20.0% |
| ! | ATAAATGCTGCATATAAGAA+TGG | + | chr3_3:55762072-55762091 | Msa0459270:CDS | 25.0% |
| ! | TTCGAGTATAATCAATCAAA+GGG | - | chr3_3:55762149-55762168 | None:intergenic | 25.0% |
| ! | ATTCGAGTATAATCAATCAA+AGG | - | chr3_3:55762150-55762169 | None:intergenic | 25.0% |
| ! | TATACTCGAATTAATCAACT+TGG | + | chr3_3:55762159-55762178 | Msa0459270:CDS | 25.0% |
| ! | ACATGAATATACTAGATACA+AGG | - | chr3_3:55762255-55762274 | None:intergenic | 25.0% |
| ! | AACCAAGTAAATAGAAAAGT+TGG | - | chr3_3:55762278-55762297 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTAGGTTAA+GGG | + | chr3_3:55762292-55762311 | Msa0459270:intron | 25.0% |
| !! | TTTAGACTAATCTTTGAGTT+AGG | - | chr3_3:55762535-55762554 | None:intergenic | 25.0% |
| ! | TACCAAACATATCCTAATTA+TGG | + | chr3_3:55762743-55762762 | Msa0459270:intron | 25.0% |
| ! | ATCCATAATTAGGATATGTT+TGG | - | chr3_3:55762748-55762767 | None:intergenic | 25.0% |
| ! | ATAAATGCTGCATATAAGAA+TGG | + | chr3_3:55762072-55762091 | Msa0459270:CDS | 25.0% |
| ! | TTCGAGTATAATCAATCAAA+GGG | - | chr3_3:55762149-55762168 | None:intergenic | 25.0% |
| ! | ATTCGAGTATAATCAATCAA+AGG | - | chr3_3:55762150-55762169 | None:intergenic | 25.0% |
| ! | TATACTCGAATTAATCAACT+TGG | + | chr3_3:55762159-55762178 | Msa0459270:CDS | 25.0% |
| ! | ACATGAATATACTAGATACA+AGG | - | chr3_3:55762255-55762274 | None:intergenic | 25.0% |
| ! | AACCAAGTAAATAGAAAAGT+TGG | - | chr3_3:55762278-55762297 | None:intergenic | 25.0% |
| !!! | TTGGTTTGTTTTTAGGTTAA+GGG | + | chr3_3:55762292-55762311 | Msa0459270:intron | 25.0% |
| !! | TTTAGACTAATCTTTGAGTT+AGG | - | chr3_3:55762535-55762554 | None:intergenic | 25.0% |
| ! | TACCAAACATATCCTAATTA+TGG | + | chr3_3:55762743-55762762 | Msa0459270:intron | 25.0% |
| ! | ATCCATAATTAGGATATGTT+TGG | - | chr3_3:55762748-55762767 | None:intergenic | 25.0% |
| !!! | GGTTGCATTATTTGTTTTGA+TGG | + | chr3_3:55761912-55761931 | Msa0459270:CDS | 30.0% |
| CATTTATAGAGTGAATACCT+TGG | - | chr3_3:55762059-55762078 | None:intergenic | 30.0% | |
| ! | GTCCAACTTTTCTATTTACT+TGG | + | chr3_3:55762273-55762292 | Msa0459270:intron | 30.0% |
| !!! | CTTGGTTTGTTTTTAGGTTA+AGG | + | chr3_3:55762291-55762310 | Msa0459270:intron | 30.0% |
| ! | TAATTGGCACAAAACTTTTG+AGG | + | chr3_3:55762480-55762499 | Msa0459270:intron | 30.0% |
| TACAAAACTCATTGAATGAG+TGG | - | chr3_3:55762710-55762729 | None:intergenic | 30.0% | |
| !!! | GGTTGCATTATTTGTTTTGA+TGG | + | chr3_3:55761912-55761931 | Msa0459270:CDS | 30.0% |
| CATTTATAGAGTGAATACCT+TGG | - | chr3_3:55762059-55762078 | None:intergenic | 30.0% | |
| ! | GTCCAACTTTTCTATTTACT+TGG | + | chr3_3:55762273-55762292 | Msa0459270:intron | 30.0% |
| !!! | CTTGGTTTGTTTTTAGGTTA+AGG | + | chr3_3:55762291-55762310 | Msa0459270:intron | 30.0% |
| ! | TAATTGGCACAAAACTTTTG+AGG | + | chr3_3:55762480-55762499 | Msa0459270:intron | 30.0% |
| TACAAAACTCATTGAATGAG+TGG | - | chr3_3:55762710-55762729 | None:intergenic | 30.0% | |
| AGTTGTTTGCTCACATGTTA+GGG | - | chr3_3:55761974-55761993 | None:intergenic | 35.0% | |
| TAGTTGTTTGCTCACATGTT+AGG | - | chr3_3:55761975-55761994 | None:intergenic | 35.0% | |
| ATGCCATTGCATTCAAGATA+CGG | + | chr3_3:55762113-55762132 | Msa0459270:CDS | 35.0% | |
| TACTTATTGCAATCAGTGGA+GGG | - | chr3_3:55762222-55762241 | None:intergenic | 35.0% | |
| TTACTTATTGCAATCAGTGG+AGG | - | chr3_3:55762223-55762242 | None:intergenic | 35.0% | |
| ATACTAGATACAAGGAGAGA+AGG | - | chr3_3:55762247-55762266 | None:intergenic | 35.0% | |
| TTTCTTATCTTGTGCCCTTA+GGG | - | chr3_3:55762333-55762352 | None:intergenic | 35.0% | |
| ATTTCTTATCTTGTGCCCTT+AGG | - | chr3_3:55762334-55762353 | None:intergenic | 35.0% | |
| TTAGTCTAAACAGTTGCATG+TGG | + | chr3_3:55762545-55762564 | Msa0459270:intron | 35.0% | |
| !! | GATTTTGATGTAATTGCGCA+GGG | + | chr3_3:55762765-55762784 | Msa0459270:intron | 35.0% |
| ! | AGTGCTGGAAGATTATTCTA+TGG | + | chr3_3:55762851-55762870 | Msa0459270:CDS | 35.0% |
| AGTTGTTTGCTCACATGTTA+GGG | - | chr3_3:55761974-55761993 | None:intergenic | 35.0% | |
| TAGTTGTTTGCTCACATGTT+AGG | - | chr3_3:55761975-55761994 | None:intergenic | 35.0% | |
| ATGCCATTGCATTCAAGATA+CGG | + | chr3_3:55762113-55762132 | Msa0459270:CDS | 35.0% | |
| TACTTATTGCAATCAGTGGA+GGG | - | chr3_3:55762222-55762241 | None:intergenic | 35.0% | |
| TTACTTATTGCAATCAGTGG+AGG | - | chr3_3:55762223-55762242 | None:intergenic | 35.0% | |
| ATACTAGATACAAGGAGAGA+AGG | - | chr3_3:55762247-55762266 | None:intergenic | 35.0% | |
| TTTCTTATCTTGTGCCCTTA+GGG | - | chr3_3:55762333-55762352 | None:intergenic | 35.0% | |
| ATTTCTTATCTTGTGCCCTT+AGG | - | chr3_3:55762334-55762353 | None:intergenic | 35.0% | |
| TTAGTCTAAACAGTTGCATG+TGG | + | chr3_3:55762545-55762564 | Msa0459270:intron | 35.0% | |
| !! | GATTTTGATGTAATTGCGCA+GGG | + | chr3_3:55762765-55762784 | Msa0459270:intron | 35.0% |
| ! | AGTGCTGGAAGATTATTCTA+TGG | + | chr3_3:55762851-55762870 | Msa0459270:CDS | 35.0% |
| AACATTCCATAGGGTATGCA+TGG | - | chr3_3:55762009-55762028 | None:intergenic | 40.0% | |
| ATGCATACCCTATGGAATGT+TGG | + | chr3_3:55762008-55762027 | Msa0459270:CDS | 40.0% | |
| TGCATACCCTATGGAATGTT+GGG | + | chr3_3:55762009-55762028 | Msa0459270:CDS | 40.0% | |
| TGAATACCTTGGCAACACAA+GGG | - | chr3_3:55762048-55762067 | None:intergenic | 40.0% | |
| ! | AATCAACTTGGTGACCTATG+TGG | + | chr3_3:55762171-55762190 | Msa0459270:CDS | 40.0% |
| AGGGACATTTAGATCCACAT+AGG | - | chr3_3:55762188-55762207 | None:intergenic | 40.0% | |
| ACTTATTGCAATCAGTGGAG+GGG | - | chr3_3:55762221-55762240 | None:intergenic | 40.0% | |
| GGCTTACTTATTGCAATCAG+TGG | - | chr3_3:55762226-55762245 | None:intergenic | 40.0% | |
| ACTTCTTAACTCGTGCCTTA+AGG | + | chr3_3:55762432-55762451 | Msa0459270:intron | 40.0% | |
| ! | CATGCTAACTTGTGTCCTTA+AGG | - | chr3_3:55762450-55762469 | None:intergenic | 40.0% |
| AGCATGACGCTTAGGTTAAT+TGG | + | chr3_3:55762464-55762483 | Msa0459270:intron | 40.0% | |
| AACAGTTGCATGTGGATACT+CGG | + | chr3_3:55762553-55762572 | Msa0459270:intron | 40.0% | |
| !! | GGATTTTGATGTAATTGCGC+AGG | + | chr3_3:55762764-55762783 | Msa0459270:intron | 40.0% |
| ! | AACAAATAGTCTTGCTCTCG+AGG | - | chr3_3:55762821-55762840 | None:intergenic | 40.0% |
| AACATTCCATAGGGTATGCA+TGG | - | chr3_3:55762009-55762028 | None:intergenic | 40.0% | |
| ATGCATACCCTATGGAATGT+TGG | + | chr3_3:55762008-55762027 | Msa0459270:CDS | 40.0% | |
| TGCATACCCTATGGAATGTT+GGG | + | chr3_3:55762009-55762028 | Msa0459270:CDS | 40.0% | |
| TGAATACCTTGGCAACACAA+GGG | - | chr3_3:55762048-55762067 | None:intergenic | 40.0% | |
| ! | AATCAACTTGGTGACCTATG+TGG | + | chr3_3:55762171-55762190 | Msa0459270:CDS | 40.0% |
| AGGGACATTTAGATCCACAT+AGG | - | chr3_3:55762188-55762207 | None:intergenic | 40.0% | |
| ACTTATTGCAATCAGTGGAG+GGG | - | chr3_3:55762221-55762240 | None:intergenic | 40.0% | |
| GGCTTACTTATTGCAATCAG+TGG | - | chr3_3:55762226-55762245 | None:intergenic | 40.0% | |
| ACTTCTTAACTCGTGCCTTA+AGG | + | chr3_3:55762432-55762451 | Msa0459270:intron | 40.0% | |
| ! | CATGCTAACTTGTGTCCTTA+AGG | - | chr3_3:55762450-55762469 | None:intergenic | 40.0% |
| AGCATGACGCTTAGGTTAAT+TGG | + | chr3_3:55762464-55762483 | Msa0459270:intron | 40.0% | |
| AACAGTTGCATGTGGATACT+CGG | + | chr3_3:55762553-55762572 | Msa0459270:intron | 40.0% | |
| !! | GGATTTTGATGTAATTGCGC+AGG | + | chr3_3:55762764-55762783 | Msa0459270:intron | 40.0% |
| ! | AACAAATAGTCTTGCTCTCG+AGG | - | chr3_3:55762821-55762840 | None:intergenic | 40.0% |
| CTAACTCCATGCATACCCTA+TGG | + | chr3_3:55762000-55762019 | Msa0459270:CDS | 45.0% | |
| ATACCCTATGGAATGTTGGG+AGG | + | chr3_3:55762012-55762031 | Msa0459270:CDS | 45.0% | |
| TACCCTATGGAATGTTGGGA+GGG | + | chr3_3:55762013-55762032 | Msa0459270:CDS | 45.0% | |
| GTGAATACCTTGGCAACACA+AGG | - | chr3_3:55762049-55762068 | None:intergenic | 45.0% | |
| CAGCCGTATCTTGAATGCAA+TGG | - | chr3_3:55762119-55762138 | None:intergenic | 45.0% | |
| GTGGAGGGGTAAACTTTGAA+GGG | - | chr3_3:55762207-55762226 | None:intergenic | 45.0% | |
| AGTGGAGGGGTAAACTTTGA+AGG | - | chr3_3:55762208-55762227 | None:intergenic | 45.0% | |
| AAATGCTACCTTGTGCCCTA+AGG | + | chr3_3:55762315-55762334 | Msa0459270:intron | 45.0% | |
| AATGCTACCTTGTGCCCTAA+GGG | + | chr3_3:55762316-55762335 | Msa0459270:intron | 45.0% | |
| CACAAGTTAGCATGACGCTT+AGG | + | chr3_3:55762456-55762475 | Msa0459270:intron | 45.0% | |
| GAGTTAGGATATGACCACGA+TGG | - | chr3_3:55762520-55762539 | None:intergenic | 45.0% | |
| TTGTTACCAGTAGCTAGTGC+TGG | + | chr3_3:55762836-55762855 | Msa0459270:CDS | 45.0% | |
| AATCTTCCAGCACTAGCTAC+TGG | - | chr3_3:55762845-55762864 | None:intergenic | 45.0% | |
| CTAACTCCATGCATACCCTA+TGG | + | chr3_3:55762000-55762019 | Msa0459270:CDS | 45.0% | |
| ATACCCTATGGAATGTTGGG+AGG | + | chr3_3:55762012-55762031 | Msa0459270:CDS | 45.0% | |
| TACCCTATGGAATGTTGGGA+GGG | + | chr3_3:55762013-55762032 | Msa0459270:CDS | 45.0% | |
| GTGAATACCTTGGCAACACA+AGG | - | chr3_3:55762049-55762068 | None:intergenic | 45.0% | |
| CAGCCGTATCTTGAATGCAA+TGG | - | chr3_3:55762119-55762138 | None:intergenic | 45.0% | |
| GTGGAGGGGTAAACTTTGAA+GGG | - | chr3_3:55762207-55762226 | None:intergenic | 45.0% | |
| AGTGGAGGGGTAAACTTTGA+AGG | - | chr3_3:55762208-55762227 | None:intergenic | 45.0% | |
| AAATGCTACCTTGTGCCCTA+AGG | + | chr3_3:55762315-55762334 | Msa0459270:intron | 45.0% | |
| AATGCTACCTTGTGCCCTAA+GGG | + | chr3_3:55762316-55762335 | Msa0459270:intron | 45.0% | |
| CACAAGTTAGCATGACGCTT+AGG | + | chr3_3:55762456-55762475 | Msa0459270:intron | 45.0% | |
| GAGTTAGGATATGACCACGA+TGG | - | chr3_3:55762520-55762539 | None:intergenic | 45.0% | |
| TTGTTACCAGTAGCTAGTGC+TGG | + | chr3_3:55762836-55762855 | Msa0459270:CDS | 45.0% | |
| AATCTTCCAGCACTAGCTAC+TGG | - | chr3_3:55762845-55762864 | None:intergenic | 45.0% | |
| CTCCCTCCCAACATTCCATA+GGG | - | chr3_3:55762018-55762037 | None:intergenic | 50.0% | |
| ACTCCCTCCCAACATTCCAT+AGG | - | chr3_3:55762019-55762038 | None:intergenic | 50.0% | |
| GTATCACCCTTGTGTTGCCA+AGG | + | chr3_3:55762039-55762058 | Msa0459270:intron | 50.0% | |
| AGATCTTTACCGCACCATCG+TGG | + | chr3_3:55762503-55762522 | Msa0459270:intron | 50.0% | |
| AGGATATGACCACGATGGTG+CGG | - | chr3_3:55762515-55762534 | None:intergenic | 50.0% | |
| CAGGGTGAAGTAAGCAGCAA+AGG | + | chr3_3:55762783-55762802 | Msa0459270:intron | 50.0% | |
| CTCCCTCCCAACATTCCATA+GGG | - | chr3_3:55762018-55762037 | None:intergenic | 50.0% | |
| ACTCCCTCCCAACATTCCAT+AGG | - | chr3_3:55762019-55762038 | None:intergenic | 50.0% | |
| GTATCACCCTTGTGTTGCCA+AGG | + | chr3_3:55762039-55762058 | Msa0459270:intron | 50.0% | |
| AGATCTTTACCGCACCATCG+TGG | + | chr3_3:55762503-55762522 | Msa0459270:intron | 50.0% | |
| AGGATATGACCACGATGGTG+CGG | - | chr3_3:55762515-55762534 | None:intergenic | 50.0% | |
| CAGGGTGAAGTAAGCAGCAA+AGG | + | chr3_3:55762783-55762802 | Msa0459270:intron | 50.0% | |
| TCTTGTGCCCTTAGGGCACA+AGG | - | chr3_3:55762326-55762345 | None:intergenic | 55.0% | |
| TCTTGTGCCCTTAGGGCACA+AGG | - | chr3_3:55762326-55762345 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55761904 | 55762880 | 55761904 | ID=Msa0459270;Name=Msa0459270 |
| chr3_3 | mRNA | 55761904 | 55762880 | 55761904 | ID=Msa0459270-mRNA-1;Parent=Msa0459270;Name=Msa0459270-mRNA-1;_AED=0.34;_eAED=0.49;_QI=0|0|0|1|0|0|3|0|132 |
| chr3_3 | exon | 55761904 | 55762036 | 55761904 | ID=Msa0459270-mRNA-1:exon:11072;Parent=Msa0459270-mRNA-1 |
| chr3_3 | exon | 55762061 | 55762238 | 55762061 | ID=Msa0459270-mRNA-1:exon:11073;Parent=Msa0459270-mRNA-1 |
| chr3_3 | exon | 55762793 | 55762880 | 55762793 | ID=Msa0459270-mRNA-1:exon:11074;Parent=Msa0459270-mRNA-1 |
| chr3_3 | CDS | 55761904 | 55762036 | 55761904 | ID=Msa0459270-mRNA-1:cds;Parent=Msa0459270-mRNA-1 |
| chr3_3 | CDS | 55762061 | 55762238 | 55762061 | ID=Msa0459270-mRNA-1:cds;Parent=Msa0459270-mRNA-1 |
| chr3_3 | CDS | 55762793 | 55762880 | 55762793 | ID=Msa0459270-mRNA-1:cds;Parent=Msa0459270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
