AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0706150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706150 MtrunA17_Chr8g0385291 82.707 532 45 9 1 528 1 489 0.0 857
Msa0706150 MtrunA17_Chr3g0131071 64.505 555 148 13 9 525 13 556 0.0 656
Msa0706150 MtrunA17_Chr4g0014901 68.602 379 110 5 156 528 207 582 0.0 541
Msa0706150 MtrunA17_Chr4g0014911 65.361 332 110 1 202 528 121 452 2.41e-155 451
Msa0706150 MtrunA17_Chr2g0293201 53.153 333 148 4 203 528 124 455 6.76e-125 374
Msa0706150 MtrunA17_Chr4g0004981 52.381 336 149 7 200 528 104 435 5.82e-117 353
Msa0706150 MtrunA17_Chr1g0183881 44.282 341 176 6 197 528 120 455 1.09e-95 299
Msa0706150 MtrunA17_Chr7g0243541 44.545 330 130 8 205 528 100 382 1.06e-86 273
Msa0706150 MtrunA17_Chr3g0131581 30.516 213 132 6 215 425 64 262 5.53e-19 87.0
Msa0706150 MtrunA17_Chr8g0385681 29.954 217 128 7 215 425 47 245 3.04e-16 79.0
Msa0706150 MtrunA17_Chr3g0144911 30.317 221 129 7 220 425 110 320 5.96e-16 80.1
Msa0706150 MtrunA17_Chr4g0035391 27.982 218 138 6 220 425 107 317 1.19e-15 80.1
Msa0706150 MtrunA17_Chr8g0385691 29.493 217 129 7 215 425 44 242 1.94e-15 76.3
Msa0706150 MtrunA17_Chr1g0155521 28.899 218 136 7 220 425 112 322 2.84e-15 79.0
Msa0706150 MtrunA17_Chr4g0035381 27.064 218 140 6 220 425 84 294 1.18e-14 75.9
Msa0706150 MtrunA17_Chr5g0404711 26.087 230 145 7 220 434 76 295 1.27e-14 76.3
Msa0706150 MtrunA17_Chr4g0035361 26.754 228 148 6 220 435 1 221 1.25e-13 73.2
Msa0706150 MtrunA17_Chr3g0144891 27.064 218 140 6 220 425 97 307 3.57e-13 72.0
Msa0706150 MtrunA17_Chr7g0236461 27.189 217 139 6 221 425 101 310 5.78e-13 71.6
Msa0706150 MtrunA17_Chr8g0372651 28.959 221 132 7 220 425 79 289 1.12e-12 70.5
Msa0706150 MtrunA17_Chr3g0141821 28.507 221 133 8 220 425 93 303 5.90e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0706150 AT4G09160.1 66.869 329 104 1 205 528 326 654 5.66e-168 491
Msa0706150 AT4G09160.2 66.869 329 104 1 205 528 301 629 6.54e-168 490
Msa0706150 AT4G09160.3 66.869 329 104 1 205 528 301 629 7.21e-168 490
Msa0706150 AT1G72160.1 66.366 333 107 1 201 528 147 479 2.09e-164 476
Msa0706150 AT1G22530.2 55.172 377 151 5 154 528 279 639 8.11e-140 419
Msa0706150 AT1G22530.1 55.172 377 151 5 154 528 313 673 1.25e-139 419
Msa0706150 AT1G72150.1 47.917 480 206 9 85 528 93 564 2.24e-136 407
Msa0706150 AT3G51670.1 48.352 364 178 7 171 528 34 393 7.11e-113 341
Msa0706150 AT1G30690.1 48.795 332 157 7 203 528 202 526 6.06e-112 343
Msa0706150 AT1G30690.2 48.795 332 157 7 203 528 202 526 6.06e-112 343
Msa0706150 AT1G01630.1 30.435 253 150 9 185 425 7 245 2.01e-18 85.5
Msa0706150 AT4G39180.1 29.817 218 134 6 220 425 96 306 1.41e-17 86.3
Msa0706150 AT4G39180.3 29.817 218 134 6 220 425 96 306 1.47e-17 86.3
Msa0706150 AT4G39180.2 29.817 218 134 6 220 425 96 306 1.47e-17 86.3
Msa0706150 AT2G21540.6 28.440 218 137 6 220 425 95 305 2.34e-16 82.4
Msa0706150 AT2G21540.2 28.440 218 137 6 220 425 95 305 2.34e-16 82.4
Msa0706150 AT2G21540.1 28.440 218 137 6 220 425 95 305 2.34e-16 82.4
Msa0706150 AT2G21540.4 28.440 218 137 6 220 425 95 305 2.34e-16 82.4
Msa0706150 AT2G21540.3 28.440 218 137 6 220 425 95 305 2.56e-16 82.4
Msa0706150 AT2G21540.5 28.440 218 137 6 220 425 95 305 2.56e-16 82.4
Msa0706150 AT4G34580.2 28.054 221 134 7 220 425 88 298 1.74e-15 79.7
Msa0706150 AT4G34580.1 28.054 221 134 7 220 425 88 298 1.74e-15 79.7
Msa0706150 AT3G24840.7 28.634 227 143 7 221 435 104 323 5.06e-15 78.6
Msa0706150 AT3G24840.3 28.634 227 143 7 221 435 104 323 5.06e-15 78.6
Msa0706150 AT3G24840.5 28.634 227 143 7 221 435 104 323 5.06e-15 78.6
Msa0706150 AT3G24840.1 28.634 227 143 7 221 435 104 323 5.28e-15 78.2
Msa0706150 AT3G24840.6 28.634 227 143 7 221 435 104 323 5.28e-15 78.2
Msa0706150 AT3G24840.4 28.634 227 143 7 221 435 104 323 5.28e-15 78.2
Msa0706150 AT3G24840.2 28.634 227 143 7 221 435 104 323 5.28e-15 78.2
Msa0706150 AT1G19650.1 29.412 221 131 7 220 425 104 314 8.68e-15 77.8
Msa0706150 AT2G16380.2 26.872 227 147 6 220 434 88 307 1.74e-14 76.6
Msa0706150 AT2G16380.1 26.872 227 147 6 220 434 88 307 1.74e-14 76.6
Msa0706150 AT1G19650.3 29.412 221 131 7 220 425 104 314 4.82e-14 74.7
Msa0706150 AT1G19650.2 28.261 230 140 7 221 435 33 252 1.35e-13 73.9
Msa0706150 AT4G39170.2 29.464 224 127 9 220 425 108 318 1.57e-13 73.6
Msa0706150 AT4G39170.1 29.464 224 127 9 220 425 108 318 1.66e-13 73.6
Msa0706150 AT2G21520.1 26.754 228 147 7 211 425 100 320 3.98e-13 72.4
Msa0706150 AT2G21520.2 26.754 228 147 7 211 425 104 324 4.18e-13 72.4
Msa0706150 AT2G21520.3 26.754 228 147 7 211 425 104 324 4.18e-13 72.4
Msa0706150 AT1G22180.2 26.818 220 141 5 217 432 45 248 8.79e-13 69.7
Msa0706150 AT1G22180.4 26.818 220 141 5 217 432 45 248 8.79e-13 69.7
Msa0706150 AT4G08690.2 25.000 220 141 6 217 430 42 243 1.23e-11 66.2
Msa0706150 AT4G08690.1 25.000 220 141 6 217 430 42 243 1.23e-11 66.2
Msa0706150 AT4G08690.3 25.000 220 141 6 217 430 42 243 1.23e-11 66.2
Msa0706150 AT1G75370.1 26.754 228 148 7 220 435 113 333 1.23e-11 67.8
Msa0706150 AT1G75170.2 25.701 214 138 6 217 425 43 240 3.27e-11 64.7
Msa0706150 AT1G75170.1 25.701 214 138 6 217 425 43 240 3.27e-11 64.7
Msa0706150 AT1G75370.2 26.754 228 148 7 220 435 113 333 5.29e-11 65.9

Find 158 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAACTGAATTCTCCATTTA+AGG 0.132695 4_4:-79060532 None:intergenic
TAATAGAGGTGATGGGTTTA+AGG 0.153149 4_4:-79059556 None:intergenic
CCTGAGGAAGTATCCATTTA+TGG 0.183327 4_4:+79060215 Msa0706150:CDS
TCTTGGGAGGTGAGAGTAAT+AGG 0.186017 4_4:+79061993 Msa0706150:CDS
AGAGACAAAATTTCCTTAAA+TGG 0.187206 4_4:+79060519 Msa0706150:CDS
GCAACAGGTTCTTGCTTTGC+AGG 0.224764 4_4:-79060161 None:intergenic
ACCTGTTTGGCCACAAATTC+GGG 0.225030 4_4:-79060704 None:intergenic
ATTCTCTGGAGAAAAGAATT+TGG 0.227723 4_4:+79060341 Msa0706150:CDS
ATTCTCCTGGACCTGGTAAA+TGG 0.228568 4_4:+79060630 Msa0706150:CDS
TTGAGTAAAGATGGTGAATT+TGG 0.244972 4_4:+79061229 Msa0706150:CDS
ACAAGCCCTTCAATTGTTTC+AGG 0.268118 4_4:+79060673 Msa0706150:CDS
TTCTTCTTCGGTATTAGATT+TGG 0.269327 4_4:-79059796 None:intergenic
TACCTGTTTGGCCACAAATT+CGG 0.279110 4_4:-79060705 None:intergenic
AGTTCCTTGAGAAGAGTATT+AGG 0.285523 4_4:+79060549 Msa0706150:CDS
CCATTGACAACACAAGTTCT+AGG 0.290988 4_4:+79062165 Msa0706150:CDS
AAAAGCAAGTTTGTCTTTGC+TGG 0.291845 4_4:+79061045 Msa0706150:CDS
ATTTGGAATAGAGGAGTTAA+TGG 0.294500 4_4:+79060358 Msa0706150:CDS
AAGGAGTGGTATCCCATAAA+TGG 0.296881 4_4:-79060228 None:intergenic
TGTTCATGTCAATGATCTTA+AGG 0.301789 4_4:+79060607 Msa0706150:CDS
ATCTTGTTGCTCTGACTCTA+AGG 0.326417 4_4:-79059718 None:intergenic
AGCAAAGACAAACTTGCTTT+TGG 0.331662 4_4:-79061043 None:intergenic
TGATGATGAATGAATATAAC+TGG 0.337085 4_4:-79059374 None:intergenic
TGCAGAAATGTATACTATCT+TGG 0.342464 4_4:+79061976 Msa0706150:intron
TCAGTCAGAGAGTGAAGATT+TGG 0.342948 4_4:-79062215 None:intergenic
CAAATTATCGGCGGTATTGC+CGG 0.349805 4_4:-79059350 None:intergenic
CAACAACATGTGGTGTTGTT+TGG 0.359368 4_4:-79059638 None:intergenic
AATAGAGGTGATGGGTTTAA+GGG 0.362709 4_4:-79059555 None:intergenic
GTTTCAACTTTCTCTGCAAC+AGG 0.363178 4_4:-79060176 None:intergenic
AGTTCAATTTGAAGATCATT+TGG 0.363250 4_4:-79062329 None:intergenic
GAGTTAATGGATGAGAAATT+AGG 0.366666 4_4:+79060371 Msa0706150:CDS
AATATAACTGGGCAAATTAT+CGG 0.385445 4_4:-79059362 None:intergenic
GAGTAATAGGGTGGGAAGTA+AGG 0.385717 4_4:+79062006 Msa0706150:CDS
TGAGAAATTAGGTGATGAAT+TGG 0.386783 4_4:+79060382 Msa0706150:CDS
AGTTGAAAAGAGAGCTAAGT+TGG 0.387163 4_4:+79059259 None:intergenic
AGACAATCAAATTACCTGTT+TGG 0.387293 4_4:-79060717 None:intergenic
CCCCGAATTTGTGGCCAAAC+AGG 0.390025 4_4:+79060703 Msa0706150:CDS
AAACAATTGAAGGGCTTGTT+TGG 0.391690 4_4:-79060669 None:intergenic
ATAATCAAACAAAACAATTT+CGG 0.397732 4_4:-79062284 None:intergenic
AGGAATAATGTGAAGAGAAA+AGG 0.397998 4_4:-79059584 None:intergenic
ACATGTGGTGTTGTTTGGTT+TGG 0.400074 4_4:-79059633 None:intergenic
GTTTGGAATATCAGAAGGTT+TGG 0.400595 4_4:-79059841 None:intergenic
TTTGTTGAAAGTTTCTTCTT+CGG 0.404596 4_4:-79059808 None:intergenic
CTGAGGAAGTATCCATTTAT+GGG 0.406828 4_4:+79060216 Msa0706150:CDS
CTTGTGCAGGTTCTTCTGGT+GGG 0.413583 4_4:-79059974 None:intergenic
CCCATGAAAATAGAACCTTT+TGG 0.416110 4_4:+79059309 Msa0706150:five_prime_UTR
AAAGGAAGAAGGAGATAAGA+AGG 0.419922 4_4:+79060037 Msa0706150:CDS
TTGGTTCTCTGGGTAAGAAA+AGG 0.421719 4_4:-79061024 None:intergenic
CTCAATCCACCGTACTTCAC+AGG 0.426324 4_4:-79061211 None:intergenic
GCAGAAATGTATACTATCTT+GGG 0.426741 4_4:+79061977 Msa0706150:intron
TGAGAAGAGTATTAGGAACT+TGG 0.426783 4_4:+79060556 Msa0706150:CDS
CGTCACTTCTTTCGTCTACA+AGG 0.435281 4_4:-79060247 None:intergenic
AATCATCATGTTTGCACAAG+TGG 0.436481 4_4:+79062242 Msa0706150:three_prime_UTR
CTATACTGTGATTGTCCAAA+AGG 0.437811 4_4:+79062064 Msa0706150:CDS
TTCTCCTGGACCTGGTAAAT+GGG 0.441533 4_4:+79060631 Msa0706150:CDS
CCTAGAACTTGTGTTGTCAA+TGG 0.442818 4_4:-79062165 None:intergenic
AGTAGTAGGAAGGTGGAGCC+AGG 0.442834 4_4:-79059460 None:intergenic
CTGCTACTGAGATCACAATA+AGG 0.444194 4_4:+79061263 Msa0706150:CDS
GTATAGCTTCCTTCATTGCT+TGG 0.448666 4_4:-79062047 None:intergenic
GAGAAAAGAATTTGGAATAG+AGG 0.448687 4_4:+79060349 Msa0706150:CDS
TTACATGCATGGATTTGATA+AGG 0.449042 4_4:+79060415 Msa0706150:CDS
AGGTGATGAATTGGAGAAAG+TGG 0.450262 4_4:+79060391 Msa0706150:CDS
CAAAAGGGTCTCAGTTGACT+TGG 0.453511 4_4:-79061073 None:intergenic
TTCCTTTCAATCATTCCAAA+AGG 0.458743 4_4:-79059324 None:intergenic
GAGAAAAGGAATTGTAATAG+AGG 0.461429 4_4:-79059570 None:intergenic
TGGTTCTCTGGGTAAGAAAA+GGG 0.464110 4_4:-79061023 None:intergenic
TACTTCACAGGGAGTTGCTC+TGG 0.465408 4_4:-79061199 None:intergenic
TGATTAAGAACACGATTCTC+TGG 0.467531 4_4:+79060327 Msa0706150:CDS
GGACAATTACCCCGAATTTG+TGG 0.468856 4_4:+79060694 Msa0706150:CDS
CCTGTGTGTTATAACATATA+TGG 0.470073 4_4:+79060446 Msa0706150:CDS
TACGGTGGATTGAGTAAAGA+TGG 0.480608 4_4:+79061220 Msa0706150:CDS
GATACTTCCTCAGGTGGTAA+TGG 0.483512 4_4:-79060206 None:intergenic
TCTTGTGCAGGTTCTTCTGG+TGG 0.483607 4_4:-79059975 None:intergenic
AGGAATTGTAATAGAGGTGA+TGG 0.486222 4_4:-79059564 None:intergenic
AAAGACGAAGAAAAGGAAGA+AGG 0.486264 4_4:+79060026 Msa0706150:CDS
AAAGCAAGTTTGTCTTTGCT+GGG 0.493026 4_4:+79061046 Msa0706150:CDS
AGATCATTTGGTGGTAAAAG+TGG 0.493558 4_4:-79062317 None:intergenic
CAATGTGCCATGGTGGTACT+TGG 0.493581 4_4:+79060981 Msa0706150:CDS
TGGAATATCAGAAGGTTTGG+TGG 0.495296 4_4:-79059838 None:intergenic
AATTGTCCTGAAACAATTGA+AGG 0.495434 4_4:-79060679 None:intergenic
AACGAAGAAAGACGAAGAAA+AGG 0.495758 4_4:+79060019 Msa0706150:CDS
CCATAAATGGATACTTCCTC+AGG 0.496479 4_4:-79060215 None:intergenic
TAAGAAGGAAGAGGAAGTGA+AGG 0.497688 4_4:+79060052 Msa0706150:CDS
CCTTCCTACTACTTCCAACC+TGG 0.501872 4_4:+79059470 Msa0706150:five_prime_UTR
AGTTCCCATTTACCAGGTCC+AGG 0.502724 4_4:-79060635 None:intergenic
CTTGGGAGGTGAGAGTAATA+GGG 0.506539 4_4:+79061994 Msa0706150:CDS
TGCAGGTTCTTCTGGTGGGG+TGG 0.508197 4_4:-79059970 None:intergenic
ATGAGTCTCAAGAGTGATGT+TGG 0.508469 4_4:-79059769 None:intergenic
AGAAGGAGATAAGAAGGAAG+AGG 0.510068 4_4:+79060043 Msa0706150:CDS
GAGAAAGTGGTTTACATGCA+TGG 0.510618 4_4:+79060404 Msa0706150:CDS
GGTGGTACTTGGCAGTGAAT+AGG 0.518645 4_4:+79060992 Msa0706150:CDS
TCAATTTGAAGATCATTTGG+TGG 0.520392 4_4:-79062326 None:intergenic
AAATAGAAGTTAACTAAAGC+AGG 0.521019 4_4:+79059282 Msa0706150:five_prime_UTR
TTTGGAATGATTGAAAGGAA+TGG 0.530582 4_4:+79059327 Msa0706150:five_prime_UTR
TGTCTAAGTTCCCATTTACC+AGG 0.530869 4_4:-79060641 None:intergenic
GTATCTTCTGTGGAGGATGA+TGG 0.535272 4_4:+79060083 Msa0706150:CDS
GGTGATGGGTTTAAGGGGAA+AGG 0.537560 4_4:-79059549 None:intergenic
TTGTGCAGGTTCTTCTGGTG+GGG 0.538607 4_4:-79059973 None:intergenic
AATGATCTTAAGGATTCTCC+TGG 0.539991 4_4:+79060617 Msa0706150:CDS
GAATTTGTACCAAGCAATGA+AGG 0.540167 4_4:+79062038 Msa0706150:CDS
TGTAGAATTTCCTGTTACTG+AGG 0.540830 4_4:+79061303 Msa0706150:CDS
CTTAAGGATTCTCCTGGACC+TGG 0.542401 4_4:+79060623 Msa0706150:CDS
CCAACCAGGTTGGAAGTAGT+AGG 0.549032 4_4:-79059474 None:intergenic
ATGGTAAGAACAACTTTACC+AGG 0.550180 4_4:-79062146 None:intergenic
ACTCTATTGATATGAACAGC+AGG 0.550851 4_4:-79062354 None:intergenic
GAATGATTGAAAGGAATGGC+CGG 0.551815 4_4:+79059331 Msa0706150:five_prime_UTR
TTGGTAGAGCAGAGAAGGCA+TGG 0.554359 4_4:-79059920 None:intergenic
CCTACTACTTCCAACCTGGT+TGG 0.554708 4_4:+79059474 Msa0706150:five_prime_UTR
AGTTTCAAAATTAGTGAACC+TGG 0.558010 4_4:+79062128 Msa0706150:CDS
ATCGTGGGACATGTTGGAAG+AGG 0.563039 4_4:-79059604 None:intergenic
GTAGTAGGAAGGTGGAGCCA+GGG 0.564401 4_4:-79059459 None:intergenic
GGAATTGTAATAGAGGTGAT+GGG 0.567103 4_4:-79059563 None:intergenic
GAGCAACTCCCTGTGAAGTA+CGG 0.569298 4_4:+79061202 Msa0706150:CDS
AGAGTCATCGTGGGACATGT+TGG 0.571010 4_4:-79059610 None:intergenic
TCATTGTTTGGAATATCAGA+AGG 0.571936 4_4:-79059846 None:intergenic
AGGTGTTCATCAATGTGCCA+TGG 0.572219 4_4:+79060971 Msa0706150:intron
GGGAGGTGAGAGTAATAGGG+TGG 0.573952 4_4:+79061997 Msa0706150:CDS
GTGAGTATGTTGTGCCAACC+AGG 0.574096 4_4:-79059488 None:intergenic
TGTCCAAAAGGCAAGAAAAG+TGG 0.574530 4_4:+79062076 Msa0706150:CDS
ATGCATGGATTTGATAAGGA+AGG 0.579630 4_4:+79060419 Msa0706150:CDS
GGAAAATGTAGTATCTTCTG+TGG 0.580397 4_4:+79060073 Msa0706150:CDS
TCTTGTTGCTCTGACTCTAA+GGG 0.581269 4_4:-79059717 None:intergenic
AGTTCCTAATACTCTTCTCA+AGG 0.586771 4_4:-79060553 None:intergenic
AGAAGTTAACTAAAGCAGGC+AGG 0.594282 4_4:+79059286 Msa0706150:five_prime_UTR
TTCATTGCCATTACCACCTG+AGG 0.595484 4_4:+79060199 Msa0706150:CDS
CTTCTTTCGTCTACAAGGAG+TGG 0.596620 4_4:-79060242 None:intergenic
AACAACACCACATGTTGTTG+AGG 0.598014 4_4:+79059641 Msa0706150:CDS
ATAGGGTGGGAAGTAAGGTA+TGG 0.600440 4_4:+79062011 Msa0706150:CDS
ATTGTCCTGAAACAATTGAA+GGG 0.601114 4_4:-79060678 None:intergenic
TAACATTGCATTGCAGACCC+TGG 0.602554 4_4:+79059442 Msa0706150:five_prime_UTR
AGGGTCTCAGTTGACTTGGA+AGG 0.603122 4_4:-79061069 None:intergenic
CCATATATGTTATAACACAC+AGG 0.604070 4_4:-79060446 None:intergenic
TTGGTTTGGAGAGTCATCGT+GGG 0.606315 4_4:-79059619 None:intergenic
GGAGGTGAGAGTAATAGGGT+GGG 0.610127 4_4:+79061998 Msa0706150:CDS
ATAGAGGTGATGGGTTTAAG+GGG 0.610223 4_4:-79059554 None:intergenic
GGTTGGAAGTAGTAGGAAGG+TGG 0.614157 4_4:-79059467 None:intergenic
TAGTAGTTGCAAAACAAACG+TGG 0.615786 4_4:-79059421 None:intergenic
TATTGAAGAAAGCGTTGTTG+CGG 0.623757 4_4:+79060124 Msa0706150:CDS
TCAATCCACCGTACTTCACA+GGG 0.625536 4_4:-79061210 None:intergenic
TTTGGTTTGGAGAGTCATCG+TGG 0.627279 4_4:-79059620 None:intergenic
AAATGTAGTATCTTCTGTGG+AGG 0.629752 4_4:+79060076 Msa0706150:CDS
AGAACCTGCACAAGAAAACA+AGG 0.630005 4_4:+79059983 Msa0706150:CDS
TTCTTGCTTTGCAGGAACAG+AGG 0.630059 4_4:-79060153 None:intergenic
TAAATGGATACTTCCTCAGG+TGG 0.634257 4_4:-79060212 None:intergenic
GTGAAGATTTGGTCTTCAAG+CGG 0.637718 4_4:-79062204 None:intergenic
CCAGGTTGGAAGTAGTAGGA+AGG 0.642316 4_4:-79059470 None:intergenic
GAAATGTATACTATCTTGGG+AGG 0.647101 4_4:+79061980 Msa0706150:intron
ACAACTTCCTCAACAACATG+TGG 0.651182 4_4:-79059648 None:intergenic
CCTGTTTGGCCACAAATTCG+GGG 0.652164 4_4:-79060703 None:intergenic
CATATATGTTATAACACACA+GGG 0.656526 4_4:-79060445 None:intergenic
ATATGGTGAATTTCAGAACA+AGG 0.659457 4_4:+79060463 Msa0706150:CDS
CAACTCCCTGTGAAGTACGG+TGG 0.660112 4_4:+79061205 Msa0706150:CDS
AGTAGTTGCAAAACAAACGT+GGG 0.675046 4_4:-79059420 None:intergenic
TTCACTGCCAAGTACCACCA+TGG 0.690995 4_4:-79060988 None:intergenic
ATAACTGGGCAAATTATCGG+CGG 0.704638 4_4:-79059359 None:intergenic
TGTTCATCAATGTGCCATGG+TGG 0.709016 4_4:+79060974 Msa0706150:CDS
GTATGTTGTGCCAACCAGGT+TGG 0.709233 4_4:-79059484 None:intergenic
CAATAGTGCATACACCACCA+TGG 0.712017 4_4:-79060586 None:intergenic
GATGATGAATGAATATAACT+GGG 0.716682 4_4:-79059373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTACATACAATTTTTTTATA+TGG + chr4_4:79060887-79060906 Msa0706150:intron 10.0%
!!! TGCAATTTTTTGAAATATTA+AGG - chr4_4:79060842-79060861 None:intergenic 15.0%
!!! ATTGTGAATAATTTGATTTT+TGG + chr4_4:79061150-79061169 Msa0706150:intron 15.0%
!!! TAAGGTTTGATATTTTTTTA+TGG + chr4_4:79061947-79061966 Msa0706150:intron 15.0%
!! ATAATCAAACAAAACAATTT+CGG - chr4_4:79062287-79062306 None:intergenic 15.0%
!!! ACTTGTTTTTCTTGTTTTAT+TGG - chr4_4:79059942-79059961 None:intergenic 20.0%
!! TTGTCTTCTTATAACATTAT+TGG + chr4_4:79060734-79060753 Msa0706150:intron 20.0%
!!! TAACACTTTCTGTTTTTTTT+AGG + chr4_4:79060951-79060970 Msa0706150:intron 20.0%
!! GGAATAGAATATAAAATCAA+AGG - chr4_4:79061428-79061447 None:intergenic 20.0%
!!! TGATGTTTTGATTTCTTTAT+AGG + chr4_4:79061757-79061776 Msa0706150:intron 20.0%
!! AAATATCAAACCTTATATCA+AGG - chr4_4:79061942-79061961 None:intergenic 20.0%
! AAATAGAAGTTAACTAAAGC+AGG + chr4_4:79059282-79059301 Msa0706150:five_prime_UTR 25.0%
! AATATAACTGGGCAAATTAT+CGG - chr4_4:79059365-79059384 None:intergenic 25.0%
! GATGATGAATGAATATAACT+GGG - chr4_4:79059376-79059395 None:intergenic 25.0%
!! TGATGATGAATGAATATAAC+TGG - chr4_4:79059377-79059396 None:intergenic 25.0%
! TTTGTTGAAAGTTTCTTCTT+CGG - chr4_4:79059811-79059830 None:intergenic 25.0%
! CATATATGTTATAACACACA+GGG - chr4_4:79060448-79060467 None:intergenic 25.0%
! AGAGACAAAATTTCCTTAAA+TGG + chr4_4:79060519-79060538 Msa0706150:CDS 25.0%
! TTTGCTAAAAGAATATACGT+TGG - chr4_4:79060818-79060837 None:intergenic 25.0%
!! TATATGTTTTCACCTCAAAA+GGG - chr4_4:79061091-79061110 None:intergenic 25.0%
!! TTATATGTTTTCACCTCAAA+AGG - chr4_4:79061092-79061111 None:intergenic 25.0%
!!! TTTTGAGGTGAAAACATATA+AGG + chr4_4:79061091-79061110 Msa0706150:intron 25.0%
!! TTTGAGGTGAAAACATATAA+GGG + chr4_4:79061092-79061111 Msa0706150:intron 25.0%
!!! AGGGTTAAAAATTTGCTTTT+TGG + chr4_4:79061111-79061130 Msa0706150:intron 25.0%
! TAGGATTAAGAATCTTTCAT+AGG + chr4_4:79061366-79061385 Msa0706150:intron 25.0%
! TCAGATAATATTGACAAAAG+AGG - chr4_4:79061395-79061414 None:intergenic 25.0%
!! AATTTTTACGAGCATTAAAG+TGG - chr4_4:79061588-79061607 None:intergenic 25.0%
!! AGAGCATTCTACATATATAA+AGG + chr4_4:79061684-79061703 Msa0706150:intron 25.0%
! GAGCATTCTACATATATAAA+GGG + chr4_4:79061685-79061704 Msa0706150:intron 25.0%
! ATCAAAACATCAACATCATT+AGG - chr4_4:79061749-79061768 None:intergenic 25.0%
! ATGTTAGAATTAGTTAGTGA+TGG + chr4_4:79061877-79061896 Msa0706150:intron 25.0%
! AATTCATTTGCCTTGATATA+AGG + chr4_4:79061929-79061948 Msa0706150:intron 25.0%
! AGTTCAATTTGAAGATCATT+TGG - chr4_4:79062332-79062351 None:intergenic 25.0%
! CCAAAAGGTTCTATTTTCAT+GGG - chr4_4:79059312-79059331 None:intergenic 30.0%
! TCCAAAAGGTTCTATTTTCA+TGG - chr4_4:79059313-79059332 None:intergenic 30.0%
!!! AACCTTTTGGAATGATTGAA+AGG + chr4_4:79059322-79059341 Msa0706150:five_prime_UTR 30.0%
TTCCTTTCAATCATTCCAAA+AGG - chr4_4:79059327-79059346 None:intergenic 30.0%
! TTTGGAATGATTGAAAGGAA+TGG + chr4_4:79059327-79059346 Msa0706150:five_prime_UTR 30.0%
GAGAAAAGGAATTGTAATAG+AGG - chr4_4:79059573-79059592 None:intergenic 30.0%
AGGAATAATGTGAAGAGAAA+AGG - chr4_4:79059587-79059606 None:intergenic 30.0%
TTCTTCTTCGGTATTAGATT+TGG - chr4_4:79059799-79059818 None:intergenic 30.0%
! TCATTGTTTGGAATATCAGA+AGG - chr4_4:79059849-79059868 None:intergenic 30.0%
!!! AGTGACTTGTTTTCATTGTT+TGG - chr4_4:79059861-79059880 None:intergenic 30.0%
! GAATGAGAATTTTAAGCTCT+TGG - chr4_4:79059884-79059903 None:intergenic 30.0%
!!! AAGAGATTTTAAGGTGAAAG+AGG + chr4_4:79060295-79060314 Msa0706150:CDS 30.0%
! ATTCTCTGGAGAAAAGAATT+TGG + chr4_4:79060341-79060360 Msa0706150:CDS 30.0%
! GAGAAAAGAATTTGGAATAG+AGG + chr4_4:79060349-79060368 Msa0706150:CDS 30.0%
! ATTTGGAATAGAGGAGTTAA+TGG + chr4_4:79060358-79060377 Msa0706150:CDS 30.0%
! GAGTTAATGGATGAGAAATT+AGG + chr4_4:79060371-79060390 Msa0706150:CDS 30.0%
TGAGAAATTAGGTGATGAAT+TGG + chr4_4:79060382-79060401 Msa0706150:CDS 30.0%
TTACATGCATGGATTTGATA+AGG + chr4_4:79060415-79060434 Msa0706150:CDS 30.0%
CCATATATGTTATAACACAC+AGG - chr4_4:79060449-79060468 None:intergenic 30.0%
CCTGTGTGTTATAACATATA+TGG + chr4_4:79060446-79060465 Msa0706150:CDS 30.0%
ATATGGTGAATTTCAGAACA+AGG + chr4_4:79060463-79060482 Msa0706150:CDS 30.0%
!! CAAGAAAACTTTTTCTGATG+AGG + chr4_4:79060493-79060512 Msa0706150:CDS 30.0%
TGTTCATGTCAATGATCTTA+AGG + chr4_4:79060607-79060626 Msa0706150:CDS 30.0%
ATTGTCCTGAAACAATTGAA+GGG - chr4_4:79060681-79060700 None:intergenic 30.0%
AATTGTCCTGAAACAATTGA+AGG - chr4_4:79060682-79060701 None:intergenic 30.0%
AGACAATCAAATTACCTGTT+TGG - chr4_4:79060720-79060739 None:intergenic 30.0%
! TATACGTTGGTTATTCACAT+TGG - chr4_4:79060805-79060824 None:intergenic 30.0%
TTGAGTAAAGATGGTGAATT+TGG + chr4_4:79061229-79061248 Msa0706150:CDS 30.0%
TAATCCTATGTTGCATTCTT+TGG - chr4_4:79061354-79061373 None:intergenic 30.0%
AAAACATCAACATCATTAGG+TGG - chr4_4:79061746-79061765 None:intergenic 30.0%
!! CTAACATTTTACACTAGTCT+AGG - chr4_4:79061864-79061883 None:intergenic 30.0%
TGCAGAAATGTATACTATCT+TGG + chr4_4:79061976-79061995 Msa0706150:intron 30.0%
GCAGAAATGTATACTATCTT+GGG + chr4_4:79061977-79061996 Msa0706150:intron 30.0%
AGTTTCAAAATTAGTGAACC+TGG + chr4_4:79062128-79062147 Msa0706150:CDS 30.0%
TCAATTTGAAGATCATTTGG+TGG - chr4_4:79062329-79062348 None:intergenic 30.0%
! CCCATGAAAATAGAACCTTT+TGG + chr4_4:79059309-79059328 Msa0706150:five_prime_UTR 35.0%
AGTAGTTGCAAAACAAACGT+GGG - chr4_4:79059423-79059442 None:intergenic 35.0%
TAGTAGTTGCAAAACAAACG+TGG - chr4_4:79059424-79059443 None:intergenic 35.0%
!! AATAGAGGTGATGGGTTTAA+GGG - chr4_4:79059558-79059577 None:intergenic 35.0%
!! TAATAGAGGTGATGGGTTTA+AGG - chr4_4:79059559-79059578 None:intergenic 35.0%
GGAATTGTAATAGAGGTGAT+GGG - chr4_4:79059566-79059585 None:intergenic 35.0%
AGGAATTGTAATAGAGGTGA+TGG - chr4_4:79059567-79059586 None:intergenic 35.0%
! TTTTCTTCTCAGGTTCATCA+GGG - chr4_4:79059749-79059768 None:intergenic 35.0%
! GTTTGGAATATCAGAAGGTT+TGG - chr4_4:79059844-79059863 None:intergenic 35.0%
! TTTTATTGGTAGAGCAGAGA+AGG - chr4_4:79059928-79059947 None:intergenic 35.0%
AACGAAGAAAGACGAAGAAA+AGG + chr4_4:79060019-79060038 Msa0706150:CDS 35.0%
AAAGACGAAGAAAAGGAAGA+AGG + chr4_4:79060026-79060045 Msa0706150:CDS 35.0%
AAAGGAAGAAGGAGATAAGA+AGG + chr4_4:79060037-79060056 Msa0706150:CDS 35.0%
GGAAAATGTAGTATCTTCTG+TGG + chr4_4:79060073-79060092 Msa0706150:CDS 35.0%
AAATGTAGTATCTTCTGTGG+AGG + chr4_4:79060076-79060095 Msa0706150:CDS 35.0%
!! TATTGAAGAAAGCGTTGTTG+CGG + chr4_4:79060124-79060143 Msa0706150:CDS 35.0%
!! CTGAGGAAGTATCCATTTAT+GGG + chr4_4:79060216-79060235 Msa0706150:CDS 35.0%
! TCTACGTGCAAGAGATTTTA+AGG + chr4_4:79060286-79060305 Msa0706150:CDS 35.0%
TGATTAAGAACACGATTCTC+TGG + chr4_4:79060327-79060346 Msa0706150:CDS 35.0%
ATGCATGGATTTGATAAGGA+AGG + chr4_4:79060419-79060438 Msa0706150:CDS 35.0%
GGAACTGAATTCTCCATTTA+AGG - chr4_4:79060535-79060554 None:intergenic 35.0%
!! AGTTCCTTGAGAAGAGTATT+AGG + chr4_4:79060549-79060568 Msa0706150:CDS 35.0%
AGTTCCTAATACTCTTCTCA+AGG - chr4_4:79060556-79060575 None:intergenic 35.0%
!! TGAGAAGAGTATTAGGAACT+TGG + chr4_4:79060556-79060575 Msa0706150:CDS 35.0%
!! AGGAACTTGGATTTTAACCA+TGG + chr4_4:79060569-79060588 Msa0706150:CDS 35.0%
!! AACTTGGATTTTAACCATGG+TGG + chr4_4:79060572-79060591 Msa0706150:CDS 35.0%
AATGATCTTAAGGATTCTCC+TGG + chr4_4:79060617-79060636 Msa0706150:CDS 35.0%
! AAACAATTGAAGGGCTTGTT+TGG - chr4_4:79060672-79060691 None:intergenic 35.0%
!!! AAACTTGCTTTTGGTTCTCT+GGG - chr4_4:79061037-79061056 None:intergenic 35.0%
!! AGCAAAGACAAACTTGCTTT+TGG - chr4_4:79061046-79061065 None:intergenic 35.0%
AAAAGCAAGTTTGTCTTTGC+TGG + chr4_4:79061045-79061064 Msa0706150:CDS 35.0%
AAAGCAAGTTTGTCTTTGCT+GGG + chr4_4:79061046-79061065 Msa0706150:CDS 35.0%
!!! TCTACAGTATGTTTTGATGC+TGG - chr4_4:79061289-79061308 None:intergenic 35.0%
TGTAGAATTTCCTGTTACTG+AGG + chr4_4:79061303-79061322 Msa0706150:CDS 35.0%
TTCTATTCCACAAATTGTGC+AGG + chr4_4:79061439-79061458 Msa0706150:intron 35.0%
!!! TTTTGTTAGCTTTGCAGTGT+TGG + chr4_4:79061554-79061573 Msa0706150:intron 35.0%
GAAATGTATACTATCTTGGG+AGG + chr4_4:79061980-79061999 Msa0706150:intron 35.0%
GAATTTGTACCAAGCAATGA+AGG + chr4_4:79062038-79062057 Msa0706150:CDS 35.0%
CTATACTGTGATTGTCCAAA+AGG + chr4_4:79062064-79062083 Msa0706150:CDS 35.0%
ATGGTAAGAACAACTTTACC+AGG - chr4_4:79062149-79062168 None:intergenic 35.0%
AATCATCATGTTTGCACAAG+TGG + chr4_4:79062242-79062261 Msa0706150:three_prime_UTR 35.0%
! AGATCATTTGGTGGTAAAAG+TGG - chr4_4:79062320-79062339 None:intergenic 35.0%
ACTCTATTGATATGAACAGC+AGG - chr4_4:79062357-79062376 None:intergenic 35.0%
AGAAGTTAACTAAAGCAGGC+AGG + chr4_4:79059286-79059305 Msa0706150:five_prime_UTR 40.0%
GAATGATTGAAAGGAATGGC+CGG + chr4_4:79059331-79059350 Msa0706150:five_prime_UTR 40.0%
ATAACTGGGCAAATTATCGG+CGG - chr4_4:79059362-79059381 None:intergenic 40.0%
!! ATAGAGGTGATGGGTTTAAG+GGG - chr4_4:79059557-79059576 None:intergenic 40.0%
!! ACATGTGGTGTTGTTTGGTT+TGG - chr4_4:79059636-79059655 None:intergenic 40.0%
!! CAACAACATGTGGTGTTGTT+TGG - chr4_4:79059641-79059660 None:intergenic 40.0%
AACAACACCACATGTTGTTG+AGG + chr4_4:79059641-79059660 Msa0706150:CDS 40.0%
ACAACTTCCTCAACAACATG+TGG - chr4_4:79059651-79059670 None:intergenic 40.0%
!!! GTAGCTGTTTTTTCAGGTTG+GGG - chr4_4:79059693-79059712 None:intergenic 40.0%
!!! CGTAGCTGTTTTTTCAGGTT+GGG - chr4_4:79059694-79059713 None:intergenic 40.0%
!!! TCGTAGCTGTTTTTTCAGGT+TGG - chr4_4:79059695-79059714 None:intergenic 40.0%
!!! GGAATCGTAGCTGTTTTTTC+AGG - chr4_4:79059699-79059718 None:intergenic 40.0%
TCTTGTTGCTCTGACTCTAA+GGG - chr4_4:79059720-79059739 None:intergenic 40.0%
ATCTTGTTGCTCTGACTCTA+AGG - chr4_4:79059721-79059740 None:intergenic 40.0%
! GTTTTCTTCTCAGGTTCATC+AGG - chr4_4:79059750-79059769 None:intergenic 40.0%
!!! GTGATGTTGGTTTTCTTCTC+AGG - chr4_4:79059759-79059778 None:intergenic 40.0%
ATGAGTCTCAAGAGTGATGT+TGG - chr4_4:79059772-79059791 None:intergenic 40.0%
TGGAATATCAGAAGGTTTGG+TGG - chr4_4:79059841-79059860 None:intergenic 40.0%
! TTTTCTTGTGCAGGTTCTTC+TGG - chr4_4:79059981-79060000 None:intergenic 40.0%
AGAACCTGCACAAGAAAACA+AGG + chr4_4:79059983-79060002 Msa0706150:CDS 40.0%
AGAAGGAGATAAGAAGGAAG+AGG + chr4_4:79060043-79060062 Msa0706150:CDS 40.0%
TAAGAAGGAAGAGGAAGTGA+AGG + chr4_4:79060052-79060071 Msa0706150:CDS 40.0%
GTTTCAACTTTCTCTGCAAC+AGG - chr4_4:79060179-79060198 None:intergenic 40.0%
TAAATGGATACTTCCTCAGG+TGG - chr4_4:79060215-79060234 None:intergenic 40.0%
CCATAAATGGATACTTCCTC+AGG - chr4_4:79060218-79060237 None:intergenic 40.0%
!! CCTGAGGAAGTATCCATTTA+TGG + chr4_4:79060215-79060234 Msa0706150:CDS 40.0%
AAGGAGTGGTATCCCATAAA+TGG - chr4_4:79060231-79060250 None:intergenic 40.0%
AGGTGATGAATTGGAGAAAG+TGG + chr4_4:79060391-79060410 Msa0706150:CDS 40.0%
GAGAAAGTGGTTTACATGCA+TGG + chr4_4:79060404-79060423 Msa0706150:CDS 40.0%
TGTCTAAGTTCCCATTTACC+AGG - chr4_4:79060644-79060663 None:intergenic 40.0%
ACAAGCCCTTCAATTGTTTC+AGG + chr4_4:79060673-79060692 Msa0706150:CDS 40.0%
TACCTGTTTGGCCACAAATT+CGG - chr4_4:79060708-79060727 None:intergenic 40.0%
TGGTTCTCTGGGTAAGAAAA+GGG - chr4_4:79061026-79061045 None:intergenic 40.0%
! TTGGTTCTCTGGGTAAGAAA+AGG - chr4_4:79061027-79061046 None:intergenic 40.0%
!!! CAAACTTGCTTTTGGTTCTC+TGG - chr4_4:79061038-79061057 None:intergenic 40.0%
!! TACGGTGGATTGAGTAAAGA+TGG + chr4_4:79061220-79061239 Msa0706150:CDS 40.0%
CTGCTACTGAGATCACAATA+AGG + chr4_4:79061263-79061282 Msa0706150:CDS 40.0%
GAATTTCCTGTTACTGAGGT+TGG + chr4_4:79061307-79061326 Msa0706150:intron 40.0%
GAAAAACCAACCTCAGTAAC+AGG - chr4_4:79061316-79061335 None:intergenic 40.0%
GCATCCAAAGAATGCAACAT+AGG + chr4_4:79061347-79061366 Msa0706150:intron 40.0%
CATCAACATCATTAGGTGGT+TGG - chr4_4:79061742-79061761 None:intergenic 40.0%
GTATAGCTTCCTTCATTGCT+TGG - chr4_4:79062050-79062069 None:intergenic 40.0%
TGTCCAAAAGGCAAGAAAAG+TGG + chr4_4:79062076-79062095 Msa0706150:CDS 40.0%
!!! AAGCCACTTTTCTTGCCTTT+TGG - chr4_4:79062082-79062101 None:intergenic 40.0%
CCTAGAACTTGTGTTGTCAA+TGG - chr4_4:79062168-79062187 None:intergenic 40.0%
CCATTGACAACACAAGTTCT+AGG + chr4_4:79062165-79062184 Msa0706150:CDS 40.0%
! GTGAAGATTTGGTCTTCAAG+CGG - chr4_4:79062207-79062226 None:intergenic 40.0%
TCAGTCAGAGAGTGAAGATT+TGG - chr4_4:79062218-79062237 None:intergenic 40.0%
CAAATTATCGGCGGTATTGC+CGG - chr4_4:79059353-79059372 None:intergenic 45.0%
TAACATTGCATTGCAGACCC+TGG + chr4_4:79059442-79059461 Msa0706150:five_prime_UTR 45.0%
!! TTGGTTTGGAGAGTCATCGT+GGG - chr4_4:79059622-79059641 None:intergenic 45.0%
!! TTTGGTTTGGAGAGTCATCG+TGG - chr4_4:79059623-79059642 None:intergenic 45.0%
!!! TCGTCCTTGTTTTCTTGTGC+AGG - chr4_4:79059990-79060009 None:intergenic 45.0%
GTATCTTCTGTGGAGGATGA+TGG + chr4_4:79060083-79060102 Msa0706150:CDS 45.0%
!! GGATGATGGAGCAAAAACTG+TGG + chr4_4:79060097-79060116 Msa0706150:CDS 45.0%
TGATGGAGCAAAAACTGTGG+AGG + chr4_4:79060100-79060119 Msa0706150:CDS 45.0%
TTCTTGCTTTGCAGGAACAG+AGG - chr4_4:79060156-79060175 None:intergenic 45.0%
TTCATTGCCATTACCACCTG+AGG + chr4_4:79060199-79060218 Msa0706150:CDS 45.0%
GATACTTCCTCAGGTGGTAA+TGG - chr4_4:79060209-79060228 None:intergenic 45.0%
CTTCTTTCGTCTACAAGGAG+TGG - chr4_4:79060245-79060264 None:intergenic 45.0%
CGTCACTTCTTTCGTCTACA+AGG - chr4_4:79060250-79060269 None:intergenic 45.0%
CAATAGTGCATACACCACCA+TGG - chr4_4:79060589-79060608 None:intergenic 45.0%
ATTCTCCTGGACCTGGTAAA+TGG + chr4_4:79060630-79060649 Msa0706150:CDS 45.0%
TTCTCCTGGACCTGGTAAAT+GGG + chr4_4:79060631-79060650 Msa0706150:CDS 45.0%
GGACAATTACCCCGAATTTG+TGG + chr4_4:79060694-79060713 Msa0706150:CDS 45.0%
ACCTGTTTGGCCACAAATTC+GGG - chr4_4:79060707-79060726 None:intergenic 45.0%
AGGTGTTCATCAATGTGCCA+TGG + chr4_4:79060971-79060990 Msa0706150:intron 45.0%
TGTTCATCAATGTGCCATGG+TGG + chr4_4:79060974-79060993 Msa0706150:CDS 45.0%
CAAAAGGGTCTCAGTTGACT+TGG - chr4_4:79061076-79061095 None:intergenic 45.0%
! AGTCAACTGAGACCCTTTTG+AGG + chr4_4:79061076-79061095 Msa0706150:CDS 45.0%
TCAATCCACCGTACTTCACA+GGG - chr4_4:79061213-79061232 None:intergenic 45.0%
CTTCAAGCCTGCACAATTTG+TGG - chr4_4:79061449-79061468 None:intergenic 45.0%
TCTTGGGAGGTGAGAGTAAT+AGG + chr4_4:79061993-79062012 Msa0706150:CDS 45.0%
CTTGGGAGGTGAGAGTAATA+GGG + chr4_4:79061994-79062013 Msa0706150:CDS 45.0%
GAGTAATAGGGTGGGAAGTA+AGG + chr4_4:79062006-79062025 Msa0706150:CDS 45.0%
ATAGGGTGGGAAGTAAGGTA+TGG + chr4_4:79062011-79062030 Msa0706150:CDS 45.0%
GGTTGGAAGTAGTAGGAAGG+TGG - chr4_4:79059470-79059489 None:intergenic 50.0%
! CCAGGTTGGAAGTAGTAGGA+AGG - chr4_4:79059473-79059492 None:intergenic 50.0%
CCTTCCTACTACTTCCAACC+TGG + chr4_4:79059470-79059489 Msa0706150:five_prime_UTR 50.0%
! CCAACCAGGTTGGAAGTAGT+AGG - chr4_4:79059477-79059496 None:intergenic 50.0%
CCTACTACTTCCAACCTGGT+TGG + chr4_4:79059474-79059493 Msa0706150:five_prime_UTR 50.0%
GTATGTTGTGCCAACCAGGT+TGG - chr4_4:79059487-79059506 None:intergenic 50.0%
GTGAGTATGTTGTGCCAACC+AGG - chr4_4:79059491-79059510 None:intergenic 50.0%
!! GGTGATGGGTTTAAGGGGAA+AGG - chr4_4:79059552-79059571 None:intergenic 50.0%
ATCGTGGGACATGTTGGAAG+AGG - chr4_4:79059607-79059626 None:intergenic 50.0%
AGAGTCATCGTGGGACATGT+TGG - chr4_4:79059613-79059632 None:intergenic 50.0%
TTGGTAGAGCAGAGAAGGCA+TGG - chr4_4:79059923-79059942 None:intergenic 50.0%
TTGTGCAGGTTCTTCTGGTG+GGG - chr4_4:79059976-79059995 None:intergenic 50.0%
CTTGTGCAGGTTCTTCTGGT+GGG - chr4_4:79059977-79059996 None:intergenic 50.0%
TCTTGTGCAGGTTCTTCTGG+TGG - chr4_4:79059978-79059997 None:intergenic 50.0%
GCAACAGGTTCTTGCTTTGC+AGG - chr4_4:79060164-79060183 None:intergenic 50.0%
CTTAAGGATTCTCCTGGACC+TGG + chr4_4:79060623-79060642 Msa0706150:CDS 50.0%
AGTTCCCATTTACCAGGTCC+AGG - chr4_4:79060638-79060657 None:intergenic 50.0%
CCTGTTTGGCCACAAATTCG+GGG - chr4_4:79060706-79060725 None:intergenic 50.0%
CAATGTGCCATGGTGGTACT+TGG + chr4_4:79060981-79061000 Msa0706150:CDS 50.0%
TTCACTGCCAAGTACCACCA+TGG - chr4_4:79060991-79061010 None:intergenic 50.0%
GGTGGTACTTGGCAGTGAAT+AGG + chr4_4:79060992-79061011 Msa0706150:CDS 50.0%
!! AGGGTCTCAGTTGACTTGGA+AGG - chr4_4:79061072-79061091 None:intergenic 50.0%
TACTTCACAGGGAGTTGCTC+TGG - chr4_4:79061202-79061221 None:intergenic 50.0%
GAGCAACTCCCTGTGAAGTA+CGG + chr4_4:79061202-79061221 Msa0706150:CDS 50.0%
CTCAATCCACCGTACTTCAC+AGG - chr4_4:79061214-79061233 None:intergenic 50.0%
! AGCTTTGCAGTGTTGGACTG+TGG + chr4_4:79061561-79061580 Msa0706150:intron 50.0%
GGAGGTGAGAGTAATAGGGT+GGG + chr4_4:79061998-79062017 Msa0706150:CDS 50.0%
GTAGTAGGAAGGTGGAGCCA+GGG - chr4_4:79059462-79059481 None:intergenic 55.0%
AGTAGTAGGAAGGTGGAGCC+AGG - chr4_4:79059463-79059482 None:intergenic 55.0%
CCCCGAATTTGTGGCCAAAC+AGG + chr4_4:79060703-79060722 Msa0706150:CDS 55.0%
CAACTCCCTGTGAAGTACGG+TGG + chr4_4:79061205-79061224 Msa0706150:CDS 55.0%
GGGAGGTGAGAGTAATAGGG+TGG + chr4_4:79061997-79062016 Msa0706150:CDS 55.0%
TGCAGGTTCTTCTGGTGGGG+TGG - chr4_4:79059973-79059992 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 79059271 79062429 79059271 ID=Msa0706150;Name=Msa0706150
chr4_4 mRNA 79059271 79062429 79059271 ID=Msa0706150-mRNA-1;Parent=Msa0706150;Name=Msa0706150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=344|1|1|1|1|1|4|218|533
chr4_4 exon 79059271 79060724 79059271 ID=Msa0706150-mRNA-1:exon:25322;Parent=Msa0706150-mRNA-1
chr4_4 exon 79060973 79061097 79060973 ID=Msa0706150-mRNA-1:exon:25323;Parent=Msa0706150-mRNA-1
chr4_4 exon 79061189 79061324 79061189 ID=Msa0706150-mRNA-1:exon:25324;Parent=Msa0706150-mRNA-1
chr4_4 exon 79061981 79062429 79061981 ID=Msa0706150-mRNA-1:exon:25325;Parent=Msa0706150-mRNA-1
chr4_4 five_prime_UTR 79059271 79059614 79059271 ID=Msa0706150-mRNA-1:five_prime_utr;Parent=Msa0706150-mRNA-1
chr4_4 CDS 79059615 79060724 79059615 ID=Msa0706150-mRNA-1:cds;Parent=Msa0706150-mRNA-1
chr4_4 CDS 79060973 79061097 79060973 ID=Msa0706150-mRNA-1:cds;Parent=Msa0706150-mRNA-1
chr4_4 CDS 79061189 79061324 79061189 ID=Msa0706150-mRNA-1:cds;Parent=Msa0706150-mRNA-1
chr4_4 CDS 79061981 79062211 79061981 ID=Msa0706150-mRNA-1:cds;Parent=Msa0706150-mRNA-1
chr4_4 three_prime_UTR 79062212 79062429 79062212 ID=Msa0706150-mRNA-1:three_prime_utr;Parent=Msa0706150-mRNA-1
Gene Sequence

>Msa0706150

ATGTCCCACGATGACTCTCCAAACCAAACAACACCACATGTTGTTGAGGAAGTTGTTGTTACTCATGTAAATGTTCCCCAACCTGAAAAAACAGCTACGATTCCCTTAGAGTCAGAGCAACAAGATTCACACCCTGATGAACCTGAGAAGAAAACCAACATCACTCTTGAGACTCATCTCTCCAAATCTAATACCGAAGAAGAAACTTTCAACAAAGAACAAACCACCAAACCTTCTGATATTCCAAACAATGAAAACAAGTCACTCCAAGAGCTTAAAATTCTCATTCAACAAGCACTCAATAACCATGCCTTCTCTGCTCTACCAATAAAACAAGAAAAACAAGTTTCTGATGCCACCCCACCAGAAGAACCTGCACAAGAAAACAAGGACGATAAAGTTGCAACGAAGAAAGACGAAGAAAAGGAAGAAGGAGATAAGAAGGAAGAGGAAGTGAAGGAAAATGTAGTATCTTCTGTGGAGGATGATGGAGCAAAAACTGTGGAGGCTATTGAAGAAAGCGTTGTTGCGGTTTCTGCCTCTGTTCCTGCAAAGCAAGAACCTGTTGCAGAGAAAGTTGAAACTTCATTGCCATTACCACCTGAGGAAGTATCCATTTATGGGATACCACTCCTTGTAGACGAAAGAAGTGACGTAATTCTGTTGAAATTTCTACGTGCAAGAGATTTTAAGGTGAAAGAGGCTTTCACAATGATTAAGAACACGATTCTCTGGAGAAAAGAATTTGGAATAGAGGAGTTAATGGATGAGAAATTAGGTGATGAATTGGAGAAAGTGGTTTACATGCATGGATTTGATAAGGAAGGTCACCCTGTGTGTTATAACATATATGGTGAATTTCAGAACAAGGAATTGTACAAGAAAACTTTTTCTGATGAGGAGAAGAGACAAAATTTCCTTAAATGGAGAATTCAGTTCCTTGAGAAGAGTATTAGGAACTTGGATTTTAACCATGGTGGTGTATGCACTATTGTTCATGTCAATGATCTTAAGGATTCTCCTGGACCTGGTAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAATTGTTTCAGGACAATTACCCCGAATTTGTGGCCAAACAGGTGTTCATCAATGTGCCATGGTGGTACTTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACCCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAGTCAACTGAGACCCTTTTGAGCTACATAGCTCCAGAGCAACTCCCTGTGAAGTACGGTGGATTGAGTAAAGATGGTGAATTTGGAAATTCAGATTCTGCTACTGAGATCACAATAAGGCCAGCATCAAAACATACTGTAGAATTTCCTGTTACTGAGAAATGTATACTATCTTGGGAGGTGAGAGTAATAGGGTGGGAAGTAAGGTATGGTGCAGAATTTGTACCAAGCAATGAAGGAAGCTATACTGTGATTGTCCAAAAGGCAAGAAAAGTGGCTTCATCAGAAGAAGCAGTGCTTTGCAACAGTTTCAAAATTAGTGAACCTGGTAAAGTTGTTCTTACCATTGACAACACAAGTTCTAGGAAGAAAAGCTCTTGTACCGCTTGA

Protein sequence

>Msa0706150

MSHDDSPNQTTPHVVEEVVVTHVNVPQPEKTATIPLESEQQDSHPDEPEKKTNITLETHLSKSNTEEETFNKEQTTKPSDIPNNENKSLQELKILIQQALNNHAFSALPIKQEKQVSDATPPEEPAQENKDDKVATKKDEEKEEGDKKEEEVKENVVSSVEDDGAKTVEAIEESVVAVSASVPAKQEPVAEKVETSLPLPPEEVSIYGIPLLVDERSDVILLKFLRARDFKVKEAFTMIKNTILWRKEFGIEELMDEKLGDELEKVVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRQNFLKWRIQFLEKSIRNLDFNHGGVCTIVHVNDLKDSPGPGKWELRQATKQALQLFQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSTETLLSYIAPEQLPVKYGGLSKDGEFGNSDSATEITIRPASKHTVEFPVTEKCILSWEVRVIGWEVRYGAEFVPSNEGSYTVIVQKARKVASSEEAVLCNSFKISEPGKVVLTIDNTSSRKKSSCTA*