AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1216340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216340 MtrunA17_Chr4g0065621 92.174 345 8 6 1 342 1 329 0.0 585
Msa1216340 MtrunA17_Chr4g0065651 77.536 552 73 9 1 541 1 512 2.18e-135 402
Msa1216340 MtrunA17_Chr0c22g0493881 79.653 403 41 6 1 399 1 366 9.23e-91 283
Msa1216340 MtrunA17_Chr2g0287751 66.795 259 58 10 1 253 1 237 1.33e-58 202
Msa1216340 MtrunA17_Chr2g0287741 46.536 563 176 24 10 541 15 483 5.47e-44 164
Msa1216340 MtrunA17_Chr4g0065611 91.603 131 10 1 412 541 12 142 1.16e-40 144
Msa1216340 MtrunA17_Chr0c22g0493871 91.538 130 10 1 413 541 1 130 3.75e-40 142
Msa1216340 MtrunA17_Chr1g0191671 59.559 136 50 3 1 131 1 136 5.52e-33 132
Msa1216340 MtrunA17_Chr1g0208301 70.513 78 20 1 1 75 1 78 9.10e-30 120
Msa1216340 MtrunA17_Chr7g0269081 67.143 70 23 0 5 74 17 86 2.85e-24 103
Msa1216340 MtrunA17_Chr4g0067291 42.568 148 59 3 7 128 71 218 6.60e-24 103
Msa1216340 MtrunA17_Chr3g0111541 53.521 71 33 0 3 73 5 75 4.97e-19 85.9
Msa1216340 MtrunA17_Chr1g0192131 57.333 75 31 1 4 77 9 83 6.84e-19 89.0
Msa1216340 MtrunA17_Chr7g0272571 53.521 71 33 0 9 79 32 102 1.34e-18 87.8
Msa1216340 MtrunA17_Chr2g0296001 60.294 68 27 0 7 74 70 137 4.59e-17 82.8
Msa1216340 MtrunA17_Chr1g0198341 39.189 74 45 0 10 83 4 77 1.78e-13 65.9
Msa1216340 MtrunA17_Chr8g0382721 52.459 61 29 0 14 74 33 93 7.80e-13 66.2
Msa1216340 MtrunA17_Chr1g0160201 45.902 61 33 0 14 74 29 89 1.72e-12 65.1
Msa1216340 MtrunA17_Chr2g0285561 46.575 73 38 1 8 79 6 78 2.10e-12 68.2
Msa1216340 MtrunA17_Chr3g0124411 47.761 67 35 0 8 74 28 94 2.54e-12 64.7
Msa1216340 MtrunA17_Chr2g0325601 42.254 71 41 0 14 84 6 76 3.54e-12 64.3
Msa1216340 MtrunA17_Chr1g0189221 37.975 79 49 0 1 79 44 122 3.92e-12 65.1
Msa1216340 MtrunA17_Chr7g0251491 33.654 104 62 3 2 98 40 143 7.61e-12 63.9
Msa1216340 MtrunA17_Chr4g0028461 48.276 87 43 2 12 96 68 154 1.02e-11 66.2
Msa1216340 MtrunA17_Chr7g0218981 37.037 81 51 0 13 93 7 87 1.35e-11 62.0
Msa1216340 MtrunA17_Chr5g0407821 37.179 78 49 0 3 80 16 93 1.76e-11 62.4
Msa1216340 MtrunA17_Chr5g0404641 41.176 68 40 0 9 76 2 69 5.81e-11 61.2
Msa1216340 MtrunA17_Chr4g0050571 45.455 66 35 1 10 75 101 165 9.81e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216340 AT3G06130.2 55.109 274 104 5 1 274 1 255 4.13e-47 168
Msa1216340 AT5G19090.2 77.228 101 23 0 1 101 1 101 1.77e-43 161
Msa1216340 AT5G19090.3 77.228 101 23 0 1 101 1 101 1.77e-43 161
Msa1216340 AT5G19090.5 70.000 120 27 1 1 111 1 120 1.22e-42 161
Msa1216340 AT5G19090.4 70.000 120 27 1 1 111 1 120 1.22e-42 161
Msa1216340 AT5G19090.1 70.000 120 27 1 1 111 1 120 1.22e-42 161
Msa1216340 AT3G05220.1 63.514 74 27 0 1 74 1 74 2.97e-26 113
Msa1216340 AT5G27690.1 52.475 101 43 1 5 105 25 120 3.25e-26 110
Msa1216340 AT1G23000.1 61.628 86 29 2 1 83 1 85 1.17e-25 108
Msa1216340 AT1G23000.2 61.628 86 29 2 1 83 61 145 3.33e-25 108
Msa1216340 AT5G37860.1 54.412 68 31 0 9 76 9 76 2.78e-19 88.2
Msa1216340 AT1G56210.1 54.667 75 33 1 10 83 40 114 1.49e-18 87.8
Msa1216340 AT3G06130.1 50.382 131 22 6 436 541 361 473 2.25e-14 75.9
Msa1216340 AT1G06330.1 46.875 64 34 0 14 77 6 69 2.68e-13 68.2
Msa1216340 AT4G10465.1 36.957 92 58 0 1 92 42 133 4.49e-12 65.5
Msa1216340 AT1G66240.1 40.000 65 39 0 10 74 33 97 5.19e-12 63.2
Msa1216340 AT3G56891.1 43.750 64 36 0 14 77 20 83 1.58e-11 63.5
Msa1216340 AT3G02960.1 41.892 74 42 1 3 75 119 192 2.79e-11 64.3
Msa1216340 AT4G23882.1 43.678 87 38 3 9 84 77 163 3.92e-11 64.3
Msa1216340 AT3G56240.3 41.791 67 39 0 10 76 3 69 5.02e-11 60.8
Msa1216340 AT3G56240.1 41.791 67 39 0 10 76 3 69 5.02e-11 60.8
Msa1216340 AT1G71050.1 39.394 66 40 0 9 74 27 92 7.87e-11 60.8

Find 195 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAAAGGTCACGGTTTC+AGG 0.104424 8_1:-78027967 Msa1216340:CDS
CAAGATCTAGCTCAATTTAA+AGG 0.182916 8_1:-78027622 Msa1216340:CDS
TAGGATTCTGATTCGGGTTC+TGG 0.245506 8_1:+78027569 None:intergenic
ACTTGTGATAAATAAAGATT+TGG 0.258061 8_1:+78028425 None:intergenic
GGATTACCCGACATCATTTC+CGG 0.260282 8_1:+78026740 None:intergenic
AAGAAGCAAGTTTGAGAGTT+AGG 0.269593 8_1:+78028590 None:intergenic
ACAACAACAGCAACAGTTAA+TGG 0.289999 8_1:-78026687 Msa1216340:CDS
TATTGTTTCCACCACCCTTC+TGG 0.290425 8_1:+78027761 None:intergenic
CATCTTTAGGATTCTGATTC+GGG 0.295568 8_1:+78027563 None:intergenic
ATCAAGAAGCTTGCAAAATC+AGG 0.297726 8_1:-78027922 Msa1216340:CDS
TTAACACCTTTAGCATCTTT+AGG 0.299936 8_1:+78027550 None:intergenic
CCCGACATCATTTCCGGGCT+TGG 0.308159 8_1:+78026746 None:intergenic
AGCTTCTTGATGAGAACATT+TGG 0.309355 8_1:+78027934 None:intergenic
GGAGAGAGAATGAGAAATAA+AGG 0.309923 8_1:+78028820 None:intergenic
TTGTATTTGTTGACCACCTT+TGG 0.313268 8_1:+78027732 None:intergenic
GTTACAAACTTTATTCCTAT+TGG 0.314373 8_1:-78028404 Msa1216340:five_prime_UTR
CCATTCCCCATAGGCATAGA+AGG 0.318053 8_1:+78027388 None:intergenic
CTTCTTTACTCATGACCAAT+AGG 0.330043 8_1:+78028389 None:intergenic
TAGTAGTCATTGAGAGAGAA+TGG 0.336882 8_1:+78028634 None:intergenic
GCATCTTTAGGATTCTGATT+CGG 0.340947 8_1:+78027562 None:intergenic
TTCTGGCCCGGGTGCTGATT+CGG 0.342924 8_1:+78027586 None:intergenic
TCTGATTCGGGTTCTGGCCC+GGG 0.343572 8_1:+78027575 None:intergenic
ACTGATTAACAACGTTGTTC+TGG 0.344905 8_1:+78027845 None:intergenic
GGTGATTATAGATCTGAAAA+TGG 0.348415 8_1:+78028463 None:intergenic
TTCTGATTCGGGTTCTGGCC+CGG 0.355308 8_1:+78027574 None:intergenic
ATGATGGGCGGCGGCGGAGG+TGG 0.357592 8_1:-78026905 Msa1216340:CDS
AATGGCGGTGGTGGCGGAAA+CGG 0.358961 8_1:-78027301 Msa1216340:CDS
GTGGCCACCGGCGTCATTCT+CGG 0.359701 8_1:-78028723 Msa1216340:five_prime_UTR
AAGAAAGGTGGCGGCGGTGG+TGG 0.361940 8_1:-78027133 Msa1216340:CDS
TTCTATAAACTACTCCTCTA+TGG 0.368659 8_1:+78026310 None:intergenic
TAGAATGAAATGAGAATAGA+AGG 0.368945 8_1:+78028526 None:intergenic
CTAAAATCATCCTCATCTTC+AGG 0.371343 8_1:+78027517 None:intergenic
TTCAAATTCATGGCATGAAT+GGG 0.375304 8_1:-78027174 Msa1216340:CDS
ATGGCGGTGGTGGCGGAAAC+GGG 0.382069 8_1:-78027300 Msa1216340:CDS
AAGGAAAAGAGAGAAATAAA+TGG 0.382972 8_1:+78028545 None:intergenic
TAAGGATCTGGAGGAGGATA+AGG 0.389057 8_1:+78026548 None:intergenic
AGAGTTAGGAAGAGAGAGAA+TGG 0.398540 8_1:+78028604 None:intergenic
TGATGTTGCTGTTGTTGATA+AGG 0.399168 8_1:+78026719 None:intergenic
CTACCATTGCAGCACGTTGT+TGG 0.399981 8_1:+78026648 None:intergenic
CATCAAACAAACAATGTTCA+TGG 0.400654 8_1:-78026474 Msa1216340:three_prime_UTR
AAAATGATGGGCGGCGGCGG+AGG 0.402766 8_1:-78026908 Msa1216340:CDS
GGTAACATTTCTGCTGTTCA+AGG 0.405632 8_1:-78026809 Msa1216340:CDS
CAGAAATGTTACCACCCATT+TGG 0.407941 8_1:+78026819 None:intergenic
AATATATTGCATAAAATTAG+AGG 0.409097 8_1:+78026421 None:intergenic
GATTACCCGACATCATTTCC+GGG 0.409185 8_1:+78026741 None:intergenic
TTCTCTCTCACTAACACACT+TGG 0.409730 8_1:-78028684 Msa1216340:five_prime_UTR
GCAATAATCAAAATAACAAT+GGG 0.412169 8_1:-78027003 Msa1216340:CDS
GGAAAGAAAGGTGGCGGCGG+TGG 0.412415 8_1:-78027136 Msa1216340:CDS
CAGGGAAACATGCTGAGTTA+TGG 0.418710 8_1:-78027903 Msa1216340:CDS
AAAGGTGGCGGCGGTGGTGG+AGG 0.419490 8_1:-78027130 Msa1216340:CDS
GCTTCTTGATGAGAACATTT+GGG 0.423822 8_1:+78027935 None:intergenic
CCTGTGCCAGTTCAAATTCA+TGG 0.427491 8_1:-78027184 Msa1216340:CDS
TGTATTTGTTGACCACCTTT+GGG 0.427960 8_1:+78027733 None:intergenic
AAAATCTTACAGAAAATTGA+TGG 0.430085 8_1:-78028159 Msa1216340:intron
CCTGTGCCGGTTCAAATTCA+TGG 0.435135 8_1:-78027256 Msa1216340:CDS
AGTAGTCATTGAGAGAGAAT+GGG 0.436778 8_1:+78028635 None:intergenic
GGAAAGAAAGGTGGTGGTGG+TGG 0.438004 8_1:-78027208 Msa1216340:CDS
TTCATGCCATGAATTTGAAC+CGG 0.443413 8_1:+78027250 None:intergenic
ACGCCGGTGGCCACCGTCGC+CGG 0.451894 8_1:+78028732 None:intergenic
CTTGTGATAAATAAAGATTT+GGG 0.452079 8_1:+78028426 None:intergenic
GTTCAAATTCATGGCATGAA+TGG 0.453332 8_1:-78027175 Msa1216340:CDS
TAATACCACTGAGATCTTAC+CGG 0.456960 8_1:-78028751 Msa1216340:five_prime_UTR
AAAGCATGGCTGTAAGGATC+TGG 0.457940 8_1:+78026536 None:intergenic
CCTTCTATGCCTATGGGGAA+TGG 0.458052 8_1:-78027388 Msa1216340:CDS
TGATGAGTTTGATGATGAAA+TGG 0.461887 8_1:-78027440 Msa1216340:CDS
AACAACTTCAACAGATGAAA+GGG 0.462139 8_1:-78027648 Msa1216340:CDS
ACAGCTTATGAGTGCTATGA+AGG 0.465021 8_1:-78027335 Msa1216340:CDS
CATGGCATGAATGGTGGAAA+TGG 0.469268 8_1:-78027238 Msa1216340:CDS
TTCATGCCATGAATTTGAAC+TGG 0.469656 8_1:+78027178 None:intergenic
GCTGTTCAAGGCCTACCGGC+TGG 0.474751 8_1:-78026797 Msa1216340:CDS
TTCTGCTGTTCAAGGCCTAC+CGG 0.475565 8_1:-78026801 Msa1216340:CDS
ATTGACAATGGCAAAGGTGG+TGG 0.482824 8_1:-78027808 Msa1216340:CDS
AGAATGAGAAATAAAGGAAA+GGG 0.483580 8_1:+78028826 None:intergenic
GGCGGAAACGGGCAGAAACC+TGG 0.484298 8_1:-78027289 Msa1216340:CDS
TGGTTCATTCGCATACTCAT+TGG 0.484892 8_1:+78026839 None:intergenic
CACCCTGCTATGAGTGGTGC+AGG 0.485466 8_1:-78026875 Msa1216340:CDS
TCACTGAAAGCATGGCTGTA+AGG 0.487097 8_1:+78026530 None:intergenic
AGAGAGAGAGTGAGTTGCAG+AGG 0.488566 8_1:+78028799 None:intergenic
AAGGATCTGGAGGAGGATAA+GGG 0.490431 8_1:+78026549 None:intergenic
TTACCACCACTACCAGCAAT+TGG 0.502799 8_1:+78026959 None:intergenic
GGTGGCCTTGCATACATCAT+TGG 0.504586 8_1:+78026602 None:intergenic
TCTGGAGGAGGATAAGGGTA+AGG 0.506412 8_1:+78026554 None:intergenic
GGTATGTCGATACCAATTGC+TGG 0.507057 8_1:-78026971 Msa1216340:CDS
AGCAATAATCAAAATAACAA+TGG 0.513280 8_1:-78027004 Msa1216340:CDS
AAGGAAAGGTCACGGTTTCA+GGG 0.515226 8_1:-78027966 Msa1216340:CDS
TTACCTGCACCACTCATAGC+AGG 0.515328 8_1:+78026872 None:intergenic
CCATGAATTTGAACCGGCAC+AGG 0.516132 8_1:+78027256 None:intergenic
AATGGTAATGGAGGAAAGAA+AGG 0.520568 8_1:-78027148 Msa1216340:CDS
CAGAATCCTAAAGATGCTAA+AGG 0.521196 8_1:-78027556 Msa1216340:CDS
GATGCCGCCGAATCAGCACC+CGG 0.521854 8_1:-78027593 Msa1216340:CDS
AATCAAAACCAGAAGGGTGG+TGG 0.522342 8_1:-78027769 Msa1216340:CDS
GGAGGAAAGAAAGGTGGTGG+TGG 0.522847 8_1:-78027211 Msa1216340:CDS
GGTGCTCACATGATGTTGAA+TGG 0.526053 8_1:-78027367 Msa1216340:CDS
GTTCAAATTCATGGCATGAA+TGG 0.526661 8_1:-78027247 Msa1216340:CDS
CAACAACTTCAACAGATGAA+AGG 0.526664 8_1:-78027649 Msa1216340:CDS
GCTGGCGGAGGATACTTTCA+AGG 0.526671 8_1:-78026779 Msa1216340:CDS
CAAGGCCTACCGGCTGGCGG+AGG 0.527853 8_1:-78026791 Msa1216340:CDS
AACGGGCAGAAACCTGGTGG+TGG 0.531908 8_1:-78027283 Msa1216340:CDS
AATGGCAATGGAGGAAAGAA+AGG 0.535264 8_1:-78027220 Msa1216340:CDS
AGGTGGTGGTGGTCCAAGCC+CGG 0.536761 8_1:-78026759 Msa1216340:CDS
GAGAATGAGAAATAAAGGAA+AGG 0.536809 8_1:+78028825 None:intergenic
GAGTATGCGAATGAACCAAA+TGG 0.538895 8_1:-78026834 Msa1216340:CDS
CCATGAATTTGAACTGGCAC+AGG 0.538960 8_1:+78027184 None:intergenic
TTACCGGCGACGGTGGCCAC+CGG 0.539537 8_1:-78028735 Msa1216340:five_prime_UTR
GGTGGTGGAGGAAACAAGAA+TGG 0.539555 8_1:-78027040 Msa1216340:CDS
GTGCTCACATGATGTTGAAT+GGG 0.541270 8_1:-78027366 Msa1216340:CDS
GGATACTTTCAAGGTGGTGG+TGG 0.542661 8_1:-78026770 Msa1216340:CDS
CCAAGCCCGGAAATGATGTC+GGG 0.544393 8_1:-78026746 Msa1216340:CDS
TGAAAGTATCCTCCGCCAGC+CGG 0.545772 8_1:+78026782 None:intergenic
GAATCACATGACATTGCAGC+TGG 0.546046 8_1:+78026496 None:intergenic
GGAGGAGGATAAGGGTAAGG+AGG 0.549476 8_1:+78026557 None:intergenic
GGGCAGAAACCTGGTGGTGG+AGG 0.550293 8_1:-78027280 Msa1216340:CDS
TCAAGAAGCTTGCAAAATCA+GGG 0.551852 8_1:-78027921 Msa1216340:CDS
GGAGGATACTTTCAAGGTGG+TGG 0.554853 8_1:-78026773 Msa1216340:CDS
TGGTGGTGGAGGACCTGTGC+CGG 0.556236 8_1:-78027269 Msa1216340:CDS
GTAGTCATTGAGAGAGAATG+GGG 0.559844 8_1:+78028636 None:intergenic
ATGTAATTCACAGCAGGAGG+TGG 0.568435 8_1:+78026584 None:intergenic
CAAATTCATGGCATGAATGG+TGG 0.570734 8_1:-78027244 Msa1216340:CDS
CATTCCCCATAGGCATAGAA+GGG 0.572536 8_1:+78027389 None:intergenic
AATAATCAGAATCACGGTGG+AGG 0.574664 8_1:-78027106 Msa1216340:CDS
TTTGTTGACCACCTTTGGGT+TGG 0.576873 8_1:+78027737 None:intergenic
GGGTACATGTAATTCACAGC+AGG 0.576931 8_1:+78026578 None:intergenic
GGCACAGGTCCTCCACCACC+AGG 0.577295 8_1:+78027271 None:intergenic
AATGTTCAAGCTATGAACAA+TGG 0.581859 8_1:-78026938 Msa1216340:CDS
GAGTTTGATGATGAAATGGT+TGG 0.582338 8_1:-78027436 Msa1216340:CDS
TCTCTCTCACTAACACACTT+GGG 0.583240 8_1:-78028683 Msa1216340:five_prime_UTR
TCCAAGCCCGGAAATGATGT+CGG 0.584579 8_1:-78026747 Msa1216340:CDS
GGAGGAAAGAAAGGTGGCGG+CGG 0.585808 8_1:-78027139 Msa1216340:CDS
AGCAGCCAATGATGTATGCA+AGG 0.586173 8_1:-78026607 Msa1216340:CDS
TCGATACCAATTGCTGGTAG+TGG 0.586867 8_1:-78026965 Msa1216340:CDS
ACAAACAATGTTCATGGTGA+TGG 0.588045 8_1:-78026468 Msa1216340:three_prime_UTR
ATGAATGGTGGAAATGGCAA+TGG 0.589322 8_1:-78027232 Msa1216340:CDS
GTTCAAGGCCTACCGGCTGG+CGG 0.593786 8_1:-78026794 Msa1216340:CDS
AGTATCCTCCGCCAGCCGGT+AGG 0.594256 8_1:+78026786 None:intergenic
ATATATTGCATAAAATTAGA+GGG 0.595405 8_1:+78026422 None:intergenic
CATCCTCACCCTGCTATGAG+TGG 0.595605 8_1:-78026881 Msa1216340:CDS
TGGCTGTAAGGATCTGGAGG+AGG 0.596052 8_1:+78026542 None:intergenic
CAACAAATACAACAACTACA+AGG 0.597690 8_1:-78027721 Msa1216340:CDS
AGGTCAGAATCAAAACCAGA+AGG 0.597938 8_1:-78027776 Msa1216340:CDS
ATTTGATGTGCCTGAAGATG+AGG 0.599659 8_1:-78027527 Msa1216340:CDS
TCAAATTCATGGCATGAATG+GGG 0.600577 8_1:-78027173 Msa1216340:CDS
ATTGCATAAAATTAGAGGGT+GGG 0.603462 8_1:+78026426 None:intergenic
GGCAATGGAGGAAAGAAAGG+TGG 0.603629 8_1:-78027217 Msa1216340:CDS
AACAATAACCAACCCAAAGG+TGG 0.605261 8_1:-78027745 Msa1216340:CDS
AATGGAGGAAAGAAAGGTGG+TGG 0.606743 8_1:-78027214 Msa1216340:CDS
GATAGATGCAGAACAAGGAA+AGG 0.608149 8_1:-78027980 Msa1216340:CDS
ATACCAATTGCTGGTAGTGG+TGG 0.608621 8_1:-78026962 Msa1216340:CDS
TATTGCATAAAATTAGAGGG+TGG 0.609150 8_1:+78026425 None:intergenic
CAAATTGACAATGGCAAAGG+TGG 0.610618 8_1:-78027811 Msa1216340:CDS
AGTATGCGAATGAACCAAAT+GGG 0.610690 8_1:-78026833 Msa1216340:CDS
TTCATAGCACTCATAAGCTG+TGG 0.610940 8_1:+78027337 None:intergenic
ATGCAAATTGACAATGGCAA+AGG 0.611165 8_1:-78027814 Msa1216340:CDS
CAAATTCATGGCATGAATGG+GGG 0.612639 8_1:-78027172 Msa1216340:CDS
GGTGGAGGAAACAAGAATGG+AGG 0.612726 8_1:-78027037 Msa1216340:CDS
CACTGAGATCTTACCGGCGA+CGG 0.616024 8_1:-78028745 Msa1216340:five_prime_UTR
AAAGTGAACATACACTGTGA+TGG 0.617847 8_1:-78028201 Msa1216340:CDS
ATGTGAGCACCATTCCCCAT+AGG 0.619841 8_1:+78027379 None:intergenic
GGGGTTTCTAATTACCATAG+AGG 0.620908 8_1:-78026324 Msa1216340:three_prime_UTR
GGTCAGAATCAAAACCAGAA+GGG 0.626233 8_1:-78027775 Msa1216340:CDS
GGTCACGGTTTCAGGGAATG+TGG 0.626243 8_1:-78027959 Msa1216340:CDS
TGGCCCGGGTGCTGATTCGG+CGG 0.627521 8_1:+78027589 None:intergenic
AAGAACATGCAAATTGACAA+TGG 0.628311 8_1:-78027820 Msa1216340:CDS
GAGGAGGATAAGGGTAAGGA+GGG 0.628873 8_1:+78026558 None:intergenic
GCACCACTCATAGCAGGGTG+AGG 0.629783 8_1:+78026878 None:intergenic
GAACCAACAACGTGCTGCAA+TGG 0.631234 8_1:-78026651 Msa1216340:CDS
AATGGAGGAAAGAAAGGTGG+CGG 0.631313 8_1:-78027142 Msa1216340:CDS
GCATGGCTGTAAGGATCTGG+AGG 0.631436 8_1:+78026539 None:intergenic
TGAGATCTTACCGGCGACGG+TGG 0.634936 8_1:-78028742 Msa1216340:five_prime_UTR
CTTATGAGTGCTATGAAGGG+TGG 0.638762 8_1:-78027331 Msa1216340:CDS
GGAGGAAATAATCAGAATCA+CGG 0.638839 8_1:-78027112 Msa1216340:CDS
TGCAGAACAAGGAAAGGTCA+CGG 0.641237 8_1:-78027974 Msa1216340:CDS
AATAATCAAAATAACAATGG+GGG 0.641757 8_1:-78027001 Msa1216340:CDS
CAGCTTATGAGTGCTATGAA+GGG 0.642847 8_1:-78027334 Msa1216340:CDS
ATGCCGCCGAATCAGCACCC+GGG 0.644621 8_1:-78027592 Msa1216340:CDS
ACTGAGATAGATGCAGAACA+AGG 0.647644 8_1:-78027985 Msa1216340:CDS
TACATGTAATTCACAGCAGG+AGG 0.650237 8_1:+78026581 None:intergenic
GGTAATGGAGGAAAGAAAGG+TGG 0.651222 8_1:-78027145 Msa1216340:CDS
AGAGAGACCGAGAATGACGC+CGG 0.658961 8_1:+78028716 None:intergenic
TACCTGCACCACTCATAGCA+GGG 0.659944 8_1:+78026873 None:intergenic
GAGTGGTGCAGGTAATAATG+TGG 0.661904 8_1:-78026864 Msa1216340:CDS
AATGGTGGAAATGGCAATGG+AGG 0.665518 8_1:-78027229 Msa1216340:CDS
CAATAATCAAAATAACAATG+GGG 0.668955 8_1:-78027002 Msa1216340:CDS
ATTCCCCATAGGCATAGAAG+GGG 0.672578 8_1:+78027390 None:intergenic
GAGACCGAGAATGACGCCGG+TGG 0.677480 8_1:+78028719 None:intergenic
AAAGGTGGTGGAAACAACAA+AGG 0.677851 8_1:-78027796 Msa1216340:CDS
CAGAATCAAAACCAGAAGGG+TGG 0.682186 8_1:-78027772 Msa1216340:CDS
GGAAACAATAACCAACCCAA+AGG 0.682874 8_1:-78027748 Msa1216340:CDS
ATGCGAATGAACCAAATGGG+TGG 0.690349 8_1:-78026830 Msa1216340:CDS
GGAAACGGGCAGAAACCTGG+TGG 0.691525 8_1:-78027286 Msa1216340:CDS
TTCCCCATAGGCATAGAAGG+GGG 0.698362 8_1:+78027391 None:intergenic
AGTGGTGCAGGTAATAATGT+GGG 0.701968 8_1:-78026863 Msa1216340:CDS
AAATAGCGGTGGTTTACCGG+AGG 0.703021 8_1:-78027077 Msa1216340:CDS
GGCGGAGGATACTTTCAAGG+TGG 0.717626 8_1:-78026776 Msa1216340:CDS
GGAAATAATCAGAATCACGG+TGG 0.727521 8_1:-78027109 Msa1216340:CDS
CGTCGCCGGTAAGATCTCAG+TGG 0.738206 8_1:+78028746 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTTTGATTATTGTT+TGG + chr8_1:78027215-78027234 None:intergenic 10.0%
!! ATAATTGAAAGCTATAATTA+AGG + chr8_1:78026984-78027003 None:intergenic 15.0%
!! ATATATTGCATAAAATTAGA+GGG + chr8_1:78028661-78028680 None:intergenic 15.0%
!! AATATATTGCATAAAATTAG+AGG + chr8_1:78028662-78028681 None:intergenic 15.0%
!! CTTGTGATAAATAAAGATTT+GGG + chr8_1:78026657-78026676 None:intergenic 20.0%
!! ACTTGTGATAAATAAAGATT+TGG + chr8_1:78026658-78026677 None:intergenic 20.0%
!! CAAAAAAAGATAAAGAAACA+TGG + chr8_1:78026752-78026771 None:intergenic 20.0%
!! TCTGCATACAAAAAAAAATA+AGG + chr8_1:78026848-78026867 None:intergenic 20.0%
!! AAAATCTTACAGAAAATTGA+TGG - chr8_1:78026921-78026940 Msa1216340:CDS 20.0%
!! AACATTTACTCTCAAAATTA+AGG + chr8_1:78027030-78027049 None:intergenic 20.0%
!!! TTTTGATTATTGTTTGGTTT+GGG + chr8_1:78027209-78027228 None:intergenic 20.0%
!!! ATTTTGATTATTGTTTGGTT+TGG + chr8_1:78027210-78027229 None:intergenic 20.0%
!! AGCAATAATCAAAATAACAA+TGG - chr8_1:78028076-78028095 Msa1216340:intron 20.0%
!! GCAATAATCAAAATAACAAT+GGG - chr8_1:78028077-78028096 Msa1216340:intron 20.0%
!! CAATAATCAAAATAACAATG+GGG - chr8_1:78028078-78028097 Msa1216340:intron 20.0%
!! AATAATCAAAATAACAATGG+GGG - chr8_1:78028079-78028098 Msa1216340:intron 20.0%
!!! AATGGATTTCAAAAAATGAT+GGG - chr8_1:78028160-78028179 Msa1216340:CDS 20.0%
!! TAAAAAACTCATGTTTCATT+GGG + chr8_1:78028688-78028707 None:intergenic 20.0%
!!! ACTATGTTTATTTTGTTCTT+TGG - chr8_1:78028810-78028829 Msa1216340:five_prime_UTR 20.0%
! AGAATGAGAAATAAAGGAAA+GGG + chr8_1:78026257-78026276 None:intergenic 25.0%
! AAGGAAAAGAGAGAAATAAA+TGG + chr8_1:78026538-78026557 None:intergenic 25.0%
! TAGAATGAAATGAGAATAGA+AGG + chr8_1:78026557-78026576 None:intergenic 25.0%
!!! TATTTTATGTTCTTGTTTGG+TGG + chr8_1:78026595-78026614 None:intergenic 25.0%
!! GAGTATTTTATGTTCTTGTT+TGG + chr8_1:78026598-78026617 None:intergenic 25.0%
! GTTACAAACTTTATTCCTAT+TGG - chr8_1:78026676-78026695 Msa1216340:CDS 25.0%
!!! AGAAGAATTTTTGAAGATAC+AGG - chr8_1:78026709-78026728 Msa1216340:CDS 25.0%
!! TCAAAATTAAGGTTCTGTTT+TGG + chr8_1:78027019-78027038 None:intergenic 25.0%
!!! TGATTTTAGTGATGATGAAA+TGG - chr8_1:78027577-78027596 Msa1216340:CDS 25.0%
!! CAATGGATTTCAAAAAATGA+TGG - chr8_1:78028159-78028178 Msa1216340:intron 25.0%
! CTAAAAAACTCATGTTTCAT+TGG + chr8_1:78028689-78028708 None:intergenic 25.0%
GAGAATGAGAAATAAAGGAA+AGG + chr8_1:78026258-78026277 None:intergenic 30.0%
!!! TTGTTTGGTGGAGTTTTATT+TGG + chr8_1:78026583-78026602 None:intergenic 30.0%
GGTGATTATAGATCTGAAAA+TGG + chr8_1:78026620-78026639 None:intergenic 30.0%
ATTTGGGCTATAGAGAAAAA+TGG + chr8_1:78026641-78026660 None:intergenic 30.0%
!! TGTGTTGATTAATGAATGAC+AGG - chr8_1:78027062-78027081 Msa1216340:CDS 30.0%
AAGAACATGCAAATTGACAA+TGG - chr8_1:78027260-78027279 Msa1216340:CDS 30.0%
CAACAAATACAACAACTACA+AGG - chr8_1:78027359-78027378 Msa1216340:CDS 30.0%
AACAACTTCAACAGATGAAA+GGG - chr8_1:78027432-78027451 Msa1216340:CDS 30.0%
! CAAGATCTAGCTCAATTTAA+AGG - chr8_1:78027458-78027477 Msa1216340:CDS 30.0%
TTAACACCTTTAGCATCTTT+AGG + chr8_1:78027533-78027552 None:intergenic 30.0%
!! TGATGAGTTTGATGATGAAA+TGG - chr8_1:78027640-78027659 Msa1216340:CDS 30.0%
TTCAAATTCATGGCATGAAT+GGG - chr8_1:78027834-78027853 Msa1216340:CDS 30.0%
AAATAACAATGGGGGTAAAA+AGG - chr8_1:78028087-78028106 Msa1216340:intron 30.0%
AATAACAATGGGGGTAAAAA+GGG - chr8_1:78028088-78028107 Msa1216340:intron 30.0%
AATGTTCAAGCTATGAACAA+TGG - chr8_1:78028142-78028161 Msa1216340:intron 30.0%
CATCAAACAAACAATGTTCA+TGG - chr8_1:78028606-78028625 Msa1216340:five_prime_UTR 30.0%
ATTGCATAAAATTAGAGGGT+GGG + chr8_1:78028657-78028676 None:intergenic 30.0%
TATTGCATAAAATTAGAGGG+TGG + chr8_1:78028658-78028677 None:intergenic 30.0%
TTCTATAAACTACTCCTCTA+TGG + chr8_1:78028773-78028792 None:intergenic 30.0%
GGAGAGAGAATGAGAAATAA+AGG + chr8_1:78026263-78026282 None:intergenic 35.0%
TAATACCACTGAGATCTTAC+CGG - chr8_1:78026329-78026348 Msa1216340:three_prime_UTR 35.0%
AGTAGTCATTGAGAGAGAAT+GGG + chr8_1:78026448-78026467 None:intergenic 35.0%
TAGTAGTCATTGAGAGAGAA+TGG + chr8_1:78026449-78026468 None:intergenic 35.0%
AAGAAGCAAGTTTGAGAGTT+AGG + chr8_1:78026493-78026512 None:intergenic 35.0%
CTTCTTTACTCATGACCAAT+AGG + chr8_1:78026694-78026713 None:intergenic 35.0%
AAAGTGAACATACACTGTGA+TGG - chr8_1:78026879-78026898 Msa1216340:CDS 35.0%
GCTTCTTGATGAGAACATTT+GGG + chr8_1:78027148-78027167 None:intergenic 35.0%
AGCTTCTTGATGAGAACATT+TGG + chr8_1:78027149-78027168 None:intergenic 35.0%
ATCAAGAAGCTTGCAAAATC+AGG - chr8_1:78027158-78027177 Msa1216340:CDS 35.0%
TCAAGAAGCTTGCAAAATCA+GGG - chr8_1:78027159-78027178 Msa1216340:CDS 35.0%
ACTGATTAACAACGTTGTTC+TGG + chr8_1:78027238-78027257 None:intergenic 35.0%
ATGCAAATTGACAATGGCAA+AGG - chr8_1:78027266-78027285 Msa1216340:CDS 35.0%
! TGTATTTGTTGACCACCTTT+GGG + chr8_1:78027350-78027369 None:intergenic 35.0%
! TTGTATTTGTTGACCACCTT+TGG + chr8_1:78027351-78027370 None:intergenic 35.0%
CAACAACTTCAACAGATGAA+AGG - chr8_1:78027431-78027450 Msa1216340:CDS 35.0%
!! CATCTTTAGGATTCTGATTC+GGG + chr8_1:78027520-78027539 None:intergenic 35.0%
!! GCATCTTTAGGATTCTGATT+CGG + chr8_1:78027521-78027540 None:intergenic 35.0%
CAGAATCCTAAAGATGCTAA+AGG - chr8_1:78027524-78027543 Msa1216340:CDS 35.0%
CTAAAATCATCCTCATCTTC+AGG + chr8_1:78027566-78027585 None:intergenic 35.0%
!! GAGTTTGATGATGAAATGGT+TGG - chr8_1:78027644-78027663 Msa1216340:CDS 35.0%
! ATGAAGGGTGGCAATTTTAA+TGG - chr8_1:78027761-78027780 Msa1216340:CDS 35.0%
TTCATGCCATGAATTTGAAC+CGG + chr8_1:78027833-78027852 None:intergenic 35.0%
GTTCAAATTCATGGCATGAA+TGG - chr8_1:78027833-78027852 Msa1216340:CDS 35.0%
TTCATGCCATGAATTTGAAC+TGG + chr8_1:78027833-78027852 None:intergenic 35.0%
GTTCAAATTCATGGCATGAA+TGG - chr8_1:78027833-78027852 Msa1216340:CDS 35.0%
TCAAATTCATGGCATGAATG+GGG - chr8_1:78027835-78027854 Msa1216340:CDS 35.0%
!! AATGGTAATGGAGGAAAGAA+AGG - chr8_1:78027932-78027951 Msa1216340:CDS 35.0%
GGAGGAAATAATCAGAATCA+CGG - chr8_1:78027968-78027987 Msa1216340:CDS 35.0%
! GGATTTCAAAAAATGATGGG+CGG - chr8_1:78028163-78028182 Msa1216340:CDS 35.0%
AGTATGCGAATGAACCAAAT+GGG - chr8_1:78028247-78028266 Msa1216340:intron 35.0%
! TGATGTTGCTGTTGTTGATA+AGG + chr8_1:78028364-78028383 None:intergenic 35.0%
ACAACAACAGCAACAGTTAA+TGG - chr8_1:78028393-78028412 Msa1216340:exon 35.0%
! TGTTTTCATCACTGAAAGCA+TGG + chr8_1:78028561-78028580 None:intergenic 35.0%
ACAAACAATGTTCATGGTGA+TGG - chr8_1:78028612-78028631 Msa1216340:five_prime_UTR 35.0%
! TTGATCCCCTTTTCATCTAT+AGG - chr8_1:78028734-78028753 Msa1216340:five_prime_UTR 35.0%
! TGATCCCCTTTTCATCTATA+GGG - chr8_1:78028735-78028754 Msa1216340:five_prime_UTR 35.0%
AAACCCCCTATAGATGAAAA+GGG + chr8_1:78028743-78028762 None:intergenic 35.0%
TTCTCTCTCACTAACACACT+TGG - chr8_1:78026396-78026415 Msa1216340:three_prime_UTR 40.0%
TCTCTCTCACTAACACACTT+GGG - chr8_1:78026397-78026416 Msa1216340:three_prime_UTR 40.0%
GTAGTCATTGAGAGAGAATG+GGG + chr8_1:78026447-78026466 None:intergenic 40.0%
AGAGTTAGGAAGAGAGAGAA+TGG + chr8_1:78026479-78026498 None:intergenic 40.0%
! AAGAAACATGGAGAGTGTGA+TGG + chr8_1:78026740-78026759 None:intergenic 40.0%
ACTGAGATAGATGCAGAACA+AGG - chr8_1:78027095-78027114 Msa1216340:CDS 40.0%
GATAGATGCAGAACAAGGAA+AGG - chr8_1:78027100-78027119 Msa1216340:CDS 40.0%
CAAATTGACAATGGCAAAGG+TGG - chr8_1:78027269-78027288 Msa1216340:CDS 40.0%
!! AAAGGTGGTGGAAACAACAA+AGG - chr8_1:78027284-78027303 Msa1216340:CDS 40.0%
AGGTCAGAATCAAAACCAGA+AGG - chr8_1:78027304-78027323 Msa1216340:CDS 40.0%
GGTCAGAATCAAAACCAGAA+GGG - chr8_1:78027305-78027324 Msa1216340:CDS 40.0%
GGAAACAATAACCAACCCAA+AGG - chr8_1:78027332-78027351 Msa1216340:CDS 40.0%
AACAATAACCAACCCAAAGG+TGG - chr8_1:78027335-78027354 Msa1216340:CDS 40.0%
ATTTGATGTGCCTGAAGATG+AGG - chr8_1:78027553-78027572 Msa1216340:CDS 40.0%
GAAGGGGGTTTCATCTTATT+AGG + chr8_1:78027677-78027696 None:intergenic 40.0%
GTGCTCACATGATGTTGAAT+GGG - chr8_1:78027714-78027733 Msa1216340:CDS 40.0%
TTCATAGCACTCATAAGCTG+TGG + chr8_1:78027746-78027765 None:intergenic 40.0%
ACAGCTTATGAGTGCTATGA+AGG - chr8_1:78027745-78027764 Msa1216340:CDS 40.0%
CAGCTTATGAGTGCTATGAA+GGG - chr8_1:78027746-78027765 Msa1216340:CDS 40.0%
!! AAGGGTGGCAATTTTAATGG+CGG - chr8_1:78027764-78027783 Msa1216340:CDS 40.0%
CAAATTCATGGCATGAATGG+TGG - chr8_1:78027836-78027855 Msa1216340:CDS 40.0%
! ATGAATGGTGGAAATGGCAA+TGG - chr8_1:78027848-78027867 Msa1216340:CDS 40.0%
AATGGCAATGGAGGAAAGAA+AGG - chr8_1:78027860-78027879 Msa1216340:CDS 40.0%
CAAATTCATGGCATGAATGG+GGG - chr8_1:78027836-78027855 Msa1216340:CDS 40.0%
ATGAATGGGGGAAATGGTAA+TGG - chr8_1:78027920-78027939 Msa1216340:CDS 40.0%
GGAAATAATCAGAATCACGG+TGG - chr8_1:78027971-78027990 Msa1216340:CDS 40.0%
AATAATCAGAATCACGGTGG+AGG - chr8_1:78027974-78027993 Msa1216340:CDS 40.0%
CAAAAATAGCGGTGGTTTAC+CGG - chr8_1:78028000-78028019 Msa1216340:intron 40.0%
!! TTTCAAAAAATGATGGGCGG+CGG - chr8_1:78028166-78028185 Msa1216340:CDS 40.0%
AGTGGTGCAGGTAATAATGT+GGG - chr8_1:78028217-78028236 Msa1216340:intron 40.0%
TGGTTCATTCGCATACTCAT+TGG + chr8_1:78028244-78028263 None:intergenic 40.0%
GAGTATGCGAATGAACCAAA+TGG - chr8_1:78028246-78028265 Msa1216340:intron 40.0%
CAGAAATGTTACCACCCATT+TGG + chr8_1:78028264-78028283 None:intergenic 40.0%
GGTAACATTTCTGCTGTTCA+AGG - chr8_1:78028271-78028290 Msa1216340:intron 40.0%
TACATGTAATTCACAGCAGG+AGG + chr8_1:78028502-78028521 None:intergenic 40.0%
! GATCCCCTTTTCATCTATAG+GGG - chr8_1:78028736-78028755 Msa1216340:five_prime_UTR 40.0%
! ATCCCCTTTTCATCTATAGG+GGG - chr8_1:78028737-78028756 Msa1216340:five_prime_UTR 40.0%
AACCCCCTATAGATGAAAAG+GGG + chr8_1:78028742-78028761 None:intergenic 40.0%
GAAACCCCCTATAGATGAAA+AGG + chr8_1:78028744-78028763 None:intergenic 40.0%
GGGGTTTCTAATTACCATAG+AGG - chr8_1:78028756-78028775 Msa1216340:five_prime_UTR 40.0%
TGCAGAACAAGGAAAGGTCA+CGG - chr8_1:78027106-78027125 Msa1216340:CDS 45.0%
AAGGAAAGGTCACGGTTTCA+GGG - chr8_1:78027114-78027133 Msa1216340:CDS 45.0%
CAGGGAAACATGCTGAGTTA+TGG - chr8_1:78027177-78027196 Msa1216340:CDS 45.0%
ATTGACAATGGCAAAGGTGG+TGG - chr8_1:78027272-78027291 Msa1216340:CDS 45.0%
CAGAATCAAAACCAGAAGGG+TGG - chr8_1:78027308-78027327 Msa1216340:CDS 45.0%
AATCAAAACCAGAAGGGTGG+TGG - chr8_1:78027311-78027330 Msa1216340:CDS 45.0%
TATTGTTTCCACCACCCTTC+TGG + chr8_1:78027322-78027341 None:intergenic 45.0%
TTTGTTGACCACCTTTGGGT+TGG + chr8_1:78027346-78027365 None:intergenic 45.0%
!! TAGGATTCTGATTCGGGTTC+TGG + chr8_1:78027514-78027533 None:intergenic 45.0%
GGGGGTTTCATCTTATTAGG+TGG + chr8_1:78027674-78027693 None:intergenic 45.0%
AAACCCCCTTCTATGCCTAT+GGG - chr8_1:78027686-78027705 Msa1216340:CDS 45.0%
ATTCCCCATAGGCATAGAAG+GGG + chr8_1:78027693-78027712 None:intergenic 45.0%
CATTCCCCATAGGCATAGAA+GGG + chr8_1:78027694-78027713 None:intergenic 45.0%
GGTGCTCACATGATGTTGAA+TGG - chr8_1:78027713-78027732 Msa1216340:CDS 45.0%
CTTATGAGTGCTATGAAGGG+TGG - chr8_1:78027749-78027768 Msa1216340:CDS 45.0%
!! AATTTTAATGGCGGTGGTGG+CGG - chr8_1:78027773-78027792 Msa1216340:CDS 45.0%
! CATGGCATGAATGGTGGAAA+TGG - chr8_1:78027842-78027861 Msa1216340:CDS 45.0%
! AATGGTGGAAATGGCAATGG+AGG - chr8_1:78027851-78027870 Msa1216340:CDS 45.0%
AATGGAGGAAAGAAAGGTGG+TGG - chr8_1:78027866-78027885 Msa1216340:CDS 45.0%
CCATGAATTTGAACTGGCAC+AGG + chr8_1:78027899-78027918 None:intergenic 45.0%
CCTGTGCCAGTTCAAATTCA+TGG - chr8_1:78027896-78027915 Msa1216340:CDS 45.0%
!! AATGGGGGAAATGGTAATGG+AGG - chr8_1:78027923-78027942 Msa1216340:CDS 45.0%
!! GGTAATGGAGGAAAGAAAGG+TGG - chr8_1:78027935-78027954 Msa1216340:CDS 45.0%
AATGGAGGAAAGAAAGGTGG+CGG - chr8_1:78027866-78027885 Msa1216340:CDS 45.0%
GGTGGAGGCAACAAAAATAG+CGG - chr8_1:78027989-78028008 Msa1216340:CDS 45.0%
GGTTTACCGGAGGCTAAAAA+TGG - chr8_1:78028013-78028032 Msa1216340:intron 45.0%
TTACCGGAGGCTAAAAATGG+TGG - chr8_1:78028016-78028035 Msa1216340:intron 45.0%
GGTATGTCGATACCAATTGC+TGG - chr8_1:78028109-78028128 Msa1216340:intron 45.0%
TCGATACCAATTGCTGGTAG+TGG - chr8_1:78028115-78028134 Msa1216340:intron 45.0%
!! ATACCAATTGCTGGTAGTGG+TGG - chr8_1:78028118-78028137 Msa1216340:intron 45.0%
TTACCACCACTACCAGCAAT+TGG + chr8_1:78028124-78028143 None:intergenic 45.0%
GAGTGGTGCAGGTAATAATG+TGG - chr8_1:78028216-78028235 Msa1216340:CDS 45.0%
ATGCGAATGAACCAAATGGG+TGG - chr8_1:78028250-78028269 Msa1216340:intron 45.0%
GATTACCCGACATCATTTCC+GGG + chr8_1:78028342-78028361 None:intergenic 45.0%
GGATTACCCGACATCATTTC+CGG + chr8_1:78028343-78028362 None:intergenic 45.0%
AGCAGCCAATGATGTATGCA+AGG - chr8_1:78028473-78028492 Msa1216340:five_prime_UTR 45.0%
ATGTAATTCACAGCAGGAGG+TGG + chr8_1:78028499-78028518 None:intergenic 45.0%
GGGTACATGTAATTCACAGC+AGG + chr8_1:78028505-78028524 None:intergenic 45.0%
AAGGATCTGGAGGAGGATAA+GGG + chr8_1:78028534-78028553 None:intergenic 45.0%
TAAGGATCTGGAGGAGGATA+AGG + chr8_1:78028535-78028554 None:intergenic 45.0%
AAAGCATGGCTGTAAGGATC+TGG + chr8_1:78028547-78028566 None:intergenic 45.0%
! TCACTGAAAGCATGGCTGTA+AGG + chr8_1:78028553-78028572 None:intergenic 45.0%
GAATCACATGACATTGCAGC+TGG + chr8_1:78028587-78028606 None:intergenic 45.0%
AGAGAGAGAGTGAGTTGCAG+AGG + chr8_1:78026284-78026303 None:intergenic 50.0%
CAAGGAAAGGTCACGGTTTC+AGG - chr8_1:78027113-78027132 Msa1216340:CDS 50.0%
GAAACCCCCTTCTATGCCTA+TGG - chr8_1:78027685-78027704 Msa1216340:CDS 50.0%
AACCCCCTTCTATGCCTATG+GGG - chr8_1:78027687-78027706 Msa1216340:CDS 50.0%
TTCCCCATAGGCATAGAAGG+GGG + chr8_1:78027692-78027711 None:intergenic 50.0%
CCATTCCCCATAGGCATAGA+AGG + chr8_1:78027695-78027714 None:intergenic 50.0%
CCTTCTATGCCTATGGGGAA+TGG - chr8_1:78027692-78027711 Msa1216340:CDS 50.0%
ATGTGAGCACCATTCCCCAT+AGG + chr8_1:78027704-78027723 None:intergenic 50.0%
!! GGTGGCAATTTTAATGGCGG+TGG - chr8_1:78027767-78027786 Msa1216340:CDS 50.0%
!! GGCAATTTTAATGGCGGTGG+TGG - chr8_1:78027770-78027789 Msa1216340:CDS 50.0%
CCATGAATTTGAACCGGCAC+AGG + chr8_1:78027827-78027846 None:intergenic 50.0%
!! CCTGTGCCGGTTCAAATTCA+TGG - chr8_1:78027824-78027843 Msa1216340:CDS 50.0%
GGCAATGGAGGAAAGAAAGG+TGG - chr8_1:78027863-78027882 Msa1216340:CDS 50.0%
CATGGCATGAATGGGGGAAA+TGG - chr8_1:78027914-78027933 Msa1216340:CDS 50.0%
GGAGGCAACAAAAATAGCGG+TGG - chr8_1:78027992-78028011 Msa1216340:CDS 50.0%
AAATAGCGGTGGTTTACCGG+AGG - chr8_1:78028003-78028022 Msa1216340:intron 50.0%
!!! CCACCACCATTTTTAGCCTC+CGG + chr8_1:78028022-78028041 None:intergenic 50.0%
!! GAGGCTAAAAATGGTGGTGG+TGG - chr8_1:78028022-78028041 Msa1216340:intron 50.0%
!! GCTAAAAATGGTGGTGGTGG+TGG - chr8_1:78028025-78028044 Msa1216340:intron 50.0%
!! AAAAATGGTGGTGGTGGTGG+AGG - chr8_1:78028028-78028047 Msa1216340:intron 50.0%
!! GGTGGTGGAGGAAACAAGAA+TGG - chr8_1:78028040-78028059 Msa1216340:intron 50.0%
GGTGGAGGAAACAAGAATGG+AGG - chr8_1:78028043-78028062 Msa1216340:intron 50.0%
TACCTGCACCACTCATAGCA+GGG + chr8_1:78028210-78028229 None:intergenic 50.0%
TTACCTGCACCACTCATAGC+AGG + chr8_1:78028211-78028230 None:intergenic 50.0%
TTCTGCTGTTCAAGGCCTAC+CGG - chr8_1:78028279-78028298 Msa1216340:intron 50.0%
GGAGGATACTTTCAAGGTGG+TGG - chr8_1:78028307-78028326 Msa1216340:intron 50.0%
! GGATACTTTCAAGGTGGTGG+TGG - chr8_1:78028310-78028329 Msa1216340:intron 50.0%
TCCAAGCCCGGAAATGATGT+CGG - chr8_1:78028333-78028352 Msa1216340:intron 50.0%
GAACCAACAACGTGCTGCAA+TGG - chr8_1:78028429-78028448 Msa1216340:five_prime_UTR 50.0%
CTACCATTGCAGCACGTTGT+TGG + chr8_1:78028435-78028454 None:intergenic 50.0%
! GGTGGCCTTGCATACATCAT+TGG + chr8_1:78028481-78028500 None:intergenic 50.0%
GAGGAGGATAAGGGTAAGGA+GGG + chr8_1:78028525-78028544 None:intergenic 50.0%
TCTGGAGGAGGATAAGGGTA+AGG + chr8_1:78028529-78028548 None:intergenic 50.0%
CACTGAGATCTTACCGGCGA+CGG - chr8_1:78026335-78026354 Msa1216340:three_prime_UTR 55.0%
AGAGAGACCGAGAATGACGC+CGG + chr8_1:78026367-78026386 None:intergenic 55.0%
GGTCACGGTTTCAGGGAATG+TGG - chr8_1:78027121-78027140 Msa1216340:CDS 55.0%
!! TTCTGATTCGGGTTCTGGCC+CGG + chr8_1:78027509-78027528 None:intergenic 55.0%
! GGAGGAAAGAAAGGTGGTGG+TGG - chr8_1:78027869-78027888 Msa1216340:CDS 55.0%
!! GGAAAGAAAGGTGGTGGTGG+TGG - chr8_1:78027872-78027891 Msa1216340:CDS 55.0%
CCGGAGGCTAAAAATGGTGG+TGG - chr8_1:78028019-78028038 Msa1216340:intron 55.0%
!! CAAAAAATGATGGGCGGCGG+CGG - chr8_1:78028169-78028188 Msa1216340:CDS 55.0%
CATCCTCACCCTGCTATGAG+TGG - chr8_1:78028199-78028218 Msa1216340:CDS 55.0%
!! TGAAAGTATCCTCCGCCAGC+CGG + chr8_1:78028301-78028320 None:intergenic 55.0%
GCTGGCGGAGGATACTTTCA+AGG - chr8_1:78028301-78028320 Msa1216340:intron 55.0%
GGCGGAGGATACTTTCAAGG+TGG - chr8_1:78028304-78028323 Msa1216340:intron 55.0%
CCAAGCCCGGAAATGATGTC+GGG - chr8_1:78028334-78028353 Msa1216340:intron 55.0%
GGAGGAGGATAAGGGTAAGG+AGG + chr8_1:78028526-78028545 None:intergenic 55.0%
TGGCTGTAAGGATCTGGAGG+AGG + chr8_1:78028541-78028560 None:intergenic 55.0%
GCATGGCTGTAAGGATCTGG+AGG + chr8_1:78028544-78028563 None:intergenic 55.0%
CGTCGCCGGTAAGATCTCAG+TGG + chr8_1:78026337-78026356 None:intergenic 60.0%
TGAGATCTTACCGGCGACGG+TGG - chr8_1:78026338-78026357 Msa1216340:three_prime_UTR 60.0%
AGTTGCTGCTGCTGCTGCTG+AGG + chr8_1:78027392-78027411 None:intergenic 60.0%
!! TTCTGGCCCGGGTGCTGATT+CGG + chr8_1:78027497-78027516 None:intergenic 60.0%
!! TCTGATTCGGGTTCTGGCCC+GGG + chr8_1:78027508-78027527 None:intergenic 60.0%
!! AATGGCGGTGGTGGCGGAAA+CGG - chr8_1:78027779-78027798 Msa1216340:CDS 60.0%
GGAAACGGGCAGAAACCTGG+TGG - chr8_1:78027794-78027813 Msa1216340:CDS 60.0%
AACGGGCAGAAACCTGGTGG+TGG - chr8_1:78027797-78027816 Msa1216340:CDS 60.0%
! GGAGGAAAGAAAGGTGGCGG+CGG - chr8_1:78027941-78027960 Msa1216340:CDS 60.0%
GCACCACTCATAGCAGGGTG+AGG + chr8_1:78028205-78028224 None:intergenic 60.0%
CACCCTGCTATGAGTGGTGC+AGG - chr8_1:78028205-78028224 Msa1216340:CDS 60.0%
CCCGACATCATTTCCGGGCT+TGG + chr8_1:78028337-78028356 None:intergenic 60.0%
GTGGCCACCGGCGTCATTCT+CGG - chr8_1:78026357-78026376 Msa1216340:three_prime_UTR 65.0%
GAGACCGAGAATGACGCCGG+TGG + chr8_1:78026364-78026383 None:intergenic 65.0%
GATGCCGCCGAATCAGCACC+CGG - chr8_1:78027487-78027506 Msa1216340:CDS 65.0%
ATGCCGCCGAATCAGCACCC+GGG - chr8_1:78027488-78027507 Msa1216340:CDS 65.0%
!! ATGGCGGTGGTGGCGGAAAC+GGG - chr8_1:78027780-78027799 Msa1216340:CDS 65.0%
GGCGGAAACGGGCAGAAACC+TGG - chr8_1:78027791-78027810 Msa1216340:CDS 65.0%
!! GGGCAGAAACCTGGTGGTGG+AGG - chr8_1:78027800-78027819 Msa1216340:CDS 65.0%
!! TGGTGGTGGAGGACCTGTGC+CGG - chr8_1:78027811-78027830 Msa1216340:CDS 65.0%
! GGAAAGAAAGGTGGCGGCGG+TGG - chr8_1:78027944-78027963 Msa1216340:CDS 65.0%
! AAGAAAGGTGGCGGCGGTGG+TGG - chr8_1:78027947-78027966 Msa1216340:CDS 65.0%
!! AAAATGATGGGCGGCGGCGG+AGG - chr8_1:78028172-78028191 Msa1216340:CDS 65.0%
GCTGTTCAAGGCCTACCGGC+TGG - chr8_1:78028283-78028302 Msa1216340:intron 65.0%
! GTTCAAGGCCTACCGGCTGG+CGG - chr8_1:78028286-78028305 Msa1216340:intron 65.0%
AGTATCCTCCGCCAGCCGGT+AGG + chr8_1:78028297-78028316 None:intergenic 65.0%
!! AGGTGGTGGTGGTCCAAGCC+CGG - chr8_1:78028321-78028340 Msa1216340:intron 65.0%
TTACCGGCGACGGTGGCCAC+CGG - chr8_1:78026345-78026364 Msa1216340:three_prime_UTR 70.0%
!! TGGCCCGGGTGCTGATTCGG+CGG + chr8_1:78027494-78027513 None:intergenic 70.0%
GGCACAGGTCCTCCACCACC+AGG + chr8_1:78027812-78027831 None:intergenic 70.0%
! AAAGGTGGCGGCGGTGGTGG+AGG - chr8_1:78027950-78027969 Msa1216340:CDS 70.0%
!! ATGATGGGCGGCGGCGGAGG+TGG - chr8_1:78028175-78028194 Msa1216340:CDS 75.0%
! CAAGGCCTACCGGCTGGCGG+AGG - chr8_1:78028289-78028308 Msa1216340:intron 75.0%
! ACGCCGGTGGCCACCGTCGC+CGG + chr8_1:78026351-78026370 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 78026250 78028852 78026250 ID=Msa1216340;Name=Msa1216340
chr8_1 mRNA 78026250 78028852 78026250 ID=Msa1216340-mRNA-1;Parent=Msa1216340;Name=Msa1216340-mRNA-1;_AED=0.06;_eAED=0.06;_QI=451|1|1|1|1|1|3|249|541
chr8_1 exon 78026250 78028018 78026250 ID=Msa1216340-mRNA-1:exon:26998;Parent=Msa1216340-mRNA-1
chr8_1 exon 78028160 78028235 78028160 ID=Msa1216340-mRNA-1:exon:26997;Parent=Msa1216340-mRNA-1
chr8_1 exon 78028372 78028852 78028372 ID=Msa1216340-mRNA-1:exon:26996;Parent=Msa1216340-mRNA-1
chr8_1 five_prime_UTR 78028402 78028852 78028402 ID=Msa1216340-mRNA-1:five_prime_utr;Parent=Msa1216340-mRNA-1
chr8_1 CDS 78028372 78028401 78028372 ID=Msa1216340-mRNA-1:cds;Parent=Msa1216340-mRNA-1
chr8_1 CDS 78028160 78028235 78028160 ID=Msa1216340-mRNA-1:cds;Parent=Msa1216340-mRNA-1
chr8_1 CDS 78026499 78028018 78026499 ID=Msa1216340-mRNA-1:cds;Parent=Msa1216340-mRNA-1
chr8_1 three_prime_UTR 78026250 78026498 78026250 ID=Msa1216340-mRNA-1:three_prime_utr;Parent=Msa1216340-mRNA-1
Gene Sequence

>Msa1216340

ATGAGTAAAGAAGAATTTTTGAAGATACAGAAATCTGTTCTAAAAGTGAACATACACTGTGATGGATGTAAACATAAAGTAAAGAAAATCTTACAGAAAATTGATGGAGTATTTACAACTGAGATAGATGCAGAACAAGGAAAGGTCACGGTTTCAGGGAATGTGGACCCAAATGTTCTCATCAAGAAGCTTGCAAAATCAGGGAAACATGCTGAGTTATGGAGTGTTCCCAAACCAAACAATAATCAAAATAATAACCAGAACAACGTTGTTAATCAGTTAAAGAACATGCAAATTGACAATGGCAAAGGTGGTGGAAACAACAAAGGTCAGAATCAAAACCAGAAGGGTGGTGGAAACAATAACCAACCCAAAGGTGGTCAACAAATACAACAACTACAAGGACTAAATCCTCAGCAGCAGCAGCAGCAACTTCAGCTTCAACAACAGTTGCAACAACTTCAACAGATGAAAGGGTTTCAAGATCTAGCTCAATTTAAAGGCATGAAGATGCCGCCGAATCAGCACCCGGGCCAGAACCCGAATCAGAATCCTAAAGATGCTAAAGGTGTTAAATTTGATGTGCCTGAAGATGAGGATGATTTTAGTGATGATGAAATGGATGATTTTGATGACGACGAAGATGATGATGAAGATTTTGATGATGAGTTTGATGATGAAATGGTTGGTTTGCCACCTAATAAGATGAAACCCCCTTCTATGCCTATGGGGAATGGTGCTCACATGATGTTGAATGGGAATCATCCACAGCTTATGAGTGCTATGAAGGGTGGCAATTTTAATGGCGGTGGTGGCGGAAACGGGCAGAAACCTGGTGGTGGAGGACCTGTGCCGGTTCAAATTCATGGCATGAATGGTGGAAATGGCAATGGAGGAAAGAAAGGTGGTGGTGGTGGACCTGTGCCAGTTCAAATTCATGGCATGAATGGGGGAAATGGTAATGGAGGAAAGAAAGGTGGCGGCGGTGGTGGAGGAAATAATCAGAATCACGGTGGAGGCAACAAAAATAGCGGTGGTTTACCGGAGGCTAAAAATGGTGGTGGTGGTGGAGGAAACAAGAATGGAGGAAATCATAATAGCAATAATCAAAATAACAATGGGGGTAAAAAGGGTATGTCGATACCAATTGCTGGTAGTGGTGGTAATGTTCAAGCTATGAACAATGGATTTCAAAAAATGATGGGCGGCGGCGGAGGTGGTCATCCTCACCCTGCTATGAGTGGTGCAGGTAATAATGTGGGACCAATGAGTATGCGAATGAACCAAATGGGTGGTAACATTTCTGCTGTTCAAGGCCTACCGGCTGGCGGAGGATACTTTCAAGGTGGTGGTGGTCCAAGCCCGGAAATGATGTCGGGTAATCCTTATCAACAACAGCAACATCAGCAGCAACAACAACAACAGCAACAGTTAATGGCTGCTGCAATGATGAACCAACAACGTGCTGCAATGGTAGAAAATGATCAAAGATTTCAGCAGCCAATGATGTATGCAAGGCCACCTCCTGCTGTGAATTACATGTACCCTCCTTACCCTTATCCTCCTCCAGATCCTTACAGCCATGCTTTCAGTGATGAAAACACTTCCAGCTGCAATGTCATGTGA
Protein sequence

>Msa1216340

MSKEEFLKIQKSVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVLIKKLAKSGKHAELWSVPKPNNNQNNNQNNVVNQLKNMQIDNGKGGGNNKGQNQNQKGGGNNNQPKGGQQIQQLQGLNPQQQQQQLQLQQQLQQLQQMKGFQDLAQFKGMKMPPNQHPGQNPNQNPKDAKGVKFDVPEDEDDFSDDEMDDFDDDEDDDEDFDDEFDDEMVGLPPNKMKPPSMPMGNGAHMMLNGNHPQLMSAMKGGNFNGGGGGNGQKPGGGGPVPVQIHGMNGGNGNGGKKGGGGGPVPVQIHGMNGGNGNGGKKGGGGGGGNNQNHGGGNKNSGGLPEAKNGGGGGGNKNGGNHNSNNQNNNGGKKGMSIPIAGSGGNVQAMNNGFQKMMGGGGGGHPHPAMSGAGNNVGPMSMRMNQMGGNISAVQGLPAGGGYFQGGGGPSPEMMSGNPYQQQQHQQQQQQQQQLMAAAMMNQQRAAMVENDQRFQQPMMYARPPPAVNYMYPPYPYPPPDPYSHAFSDENTSSCNVM*