AlfalfaGEDB | Msa0423700

M. sativa cultivar zhongmu-4 / Msa0423700

KEGG: K06627
GO: GO:0000003 GO:0000280 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006996 GO:0007049 GO:0007135 GO:0007140 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0032501 GO:0032502 GO:0032504 GO:0034293 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048236 GO:0048285 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051321 GO:0051445 GO:0051704 GO:0051726 GO:0061983 GO:0065007 GO:0071840 GO:0140013 GO:1903046 GO:2000241
PFAM: PF00134.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423700	XP_013461288.1	98.901	182	2	0	1	182	324	505	1.05e-128	381

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423700	sp\|Q9C6Y3\|CCA11_ARATH	73.626	182	48	0	1	182	278	459	4.12e-99	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423700	A0A072V1U7	98.901	182	2	0	1	182	324	505	5.01e-129	381

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0374990	Msa0423700	0.878431	2.824424e-69	-8.615850e-47
Msa0414250	Msa0423700	0.918891	8.896505e-87	-8.615850e-47
Msa0423700	Msa0470480	0.989924	2.925545e-180	-8.615850e-47
Msa0423700	Msa0525490	0.969271	7.042829e-130	-8.615850e-47
Msa0423700	Msa1169220	-0.811250	7.689795e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423700	MtrunA17_Chr3g0125051	98.901	182	2	0	1	182	324	505	9.65e-133	381
Msa0423700	MtrunA17_Chr3g0125041	64.674	184	63	1	1	182	327	510	1.78e-80	247
Msa0423700	MtrunA17_Chr1g0152871	49.727	183	89	2	1	181	177	358	1.14e-59	189
Msa0423700	MtrunA17_Chr1g0148681	53.293	167	78	0	1	167	240	406	2.78e-57	185
Msa0423700	MtrunA17_Chr3g0138431	50.829	181	87	1	1	181	297	475	4.98e-57	186
Msa0423700	MtrunA17_Chr2g0332181	50.000	180	89	1	1	180	251	429	7.64e-55	179
Msa0423700	MtrunA17_Chr2g0332171	51.429	175	81	2	1	172	305	478	9.46e-53	175
Msa0423700	MtrunA17_Chr3g0134401	44.199	181	101	0	1	181	158	338	5.06e-47	156
Msa0423700	MtrunA17_Chr3g0134441	46.667	180	96	0	1	180	150	329	1.79e-44	149
Msa0423700	MtrunA17_Chr3g0134411	42.541	181	104	0	1	181	177	357	5.14e-43	147

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0423700	AT1G44110.1	73.626	182	48	0	1	182	278	459	4.19e-100	296
Msa0423700	AT1G77390.1	64.444	180	64	0	1	180	262	441	1.17e-83	254
Msa0423700	AT5G25380.3	53.631	179	83	0	1	179	257	435	4.36e-61	196
Msa0423700	AT5G25380.1	53.631	179	83	0	1	179	257	435	4.36e-61	196
Msa0423700	AT5G25380.4	53.631	179	83	0	1	179	263	441	7.28e-61	195
Msa0423700	AT5G11300.1	52.514	179	85	0	1	179	256	434	2.66e-59	191
Msa0423700	AT5G25380.2	56.173	162	71	0	1	162	257	418	2.70e-58	188
Msa0423700	AT1G15570.1	52.326	172	82	0	1	172	272	443	3.45e-57	186
Msa0423700	AT1G47230.1	48.352	182	94	0	1	182	181	362	9.03e-57	182
Msa0423700	AT1G80370.1	51.111	180	87	1	1	180	281	459	3.35e-56	184

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Find 285 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACAAGACTCTTTCCAT+CGG	0.593429	3_2:+73633253	Msa0423700:three_prime_UTR
AAACCAAGTGTCACCAGCGA+CGG	0.647626	3_2:-73634568	None:intergenic
AAACTGATTCAAAGTGGTTC+AGG	0.400842	3_2:-73633305	None:intergenic
AAAGCGATCCATTCTCCATC+AGG	0.440483	3_2:+73633404	Msa0423700:three_prime_UTR
AAAGCGTTAGATCGACACAA+AGG	0.644624	3_2:+73632418	Msa0423700:three_prime_UTR
AAATAGTTGAGCACGGTGGC+TGG	0.481128	3_2:-73634282	None:intergenic
AACACAAGACTCTTTCCATC+GGG	0.458022	3_2:+73633254	Msa0423700:three_prime_UTR
AACAGAGTTAGAAGAATCAG+TGG	0.546517	3_2:+73634177	Msa0423700:three_prime_UTR
AACCGGAAGAGAGTCAGATT+AGG	0.568038	3_2:+73633857	Msa0423700:three_prime_UTR
AACGCTTTCCAACTGGGAAT+TGG	0.316927	3_2:-73632403	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTGATAACACATACTTCA+AGG	+	chr3_2:73631299-73631318	Msa0423700:CDS	30.0%
TTAGATTTGCAAGCTTCAAA+TGG	-	chr3_2:73631372-73631391	None:intergenic	30.0%
TAAAGCAAATCATTTCATGC+AGG	+	chr3_2:73631389-73631408	Msa0423700:intron	30.0%
GATGTAAGCTAAGAAGTAAT+TGG	+	chr3_2:73631636-73631655	Msa0423700:intron	30.0%
ATCTCATCAAATGTGAGAAA+TGG	-	chr3_2:73631729-73631748	None:intergenic	30.0%
GCAAATGAAACCAAGAAAAA+AGG	-	chr3_2:73631817-73631836	None:intergenic	30.0%
ATACTCCAACAGAGATAATT+CGG	-	chr3_2:73631889-73631908	None:intergenic	30.0%
ATTGCAGGCAAATTAGAATT+AGG	-	chr3_2:73632187-73632206	None:intergenic	30.0%
TTGTATTTCTCCTTAATTGC+AGG	-	chr3_2:73632202-73632221	None:intergenic	30.0%
GGGAAAAGATGTTTAGAAAT+TGG	-	chr3_2:73632570-73632589	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	73631110	73635063	73631110	ID=Msa0423700;Name=Msa0423700
chr3_2	mRNA	73631110	73635063	73631110	ID=Msa0423700-mRNA-1;Parent=Msa0423700;Name=Msa0423700-mRNA-1;_AED=0.00;_eAED=0.00;_QI=38\|1\|1\|1\|1\|1\|6\|2689\|182
chr3_2	exon	73631110	73631161	73631110	ID=Msa0423700-mRNA-1:exon:18388;Parent=Msa0423700-mRNA-1
chr3_2	exon	73631251	73631326	73631251	ID=Msa0423700-mRNA-1:exon:18389;Parent=Msa0423700-mRNA-1
chr3_2	exon	73631411	73631521	73631411	ID=Msa0423700-mRNA-1:exon:18390;Parent=Msa0423700-mRNA-1
chr3_2	exon	73631846	73631995	73631846	ID=Msa0423700-mRNA-1:exon:18391;Parent=Msa0423700-mRNA-1
chr3_2	exon	73632097	73632231	73632097	ID=Msa0423700-mRNA-1:exon:18392;Parent=Msa0423700-mRNA-1
chr3_2	exon	73632312	73635063	73632312	ID=Msa0423700-mRNA-1:exon:18393;Parent=Msa0423700-mRNA-1
chr3_2	five_prime_UTR	73631110	73631147	73631110	ID=Msa0423700-mRNA-1:five_prime_utr;Parent=Msa0423700-mRNA-1
chr3_2	CDS	73631148	73631161	73631148	ID=Msa0423700-mRNA-1:cds;Parent=Msa0423700-mRNA-1
chr3_2	CDS	73631251	73631326	73631251	ID=Msa0423700-mRNA-1:cds;Parent=Msa0423700-mRNA-1
chr3_2	CDS	73631411	73631521	73631411	ID=Msa0423700-mRNA-1:cds;Parent=Msa0423700-mRNA-1
chr3_2	CDS	73631846	73631995	73631846	ID=Msa0423700-mRNA-1:cds;Parent=Msa0423700-mRNA-1
chr3_2	CDS	73632097	73632231	73632097	ID=Msa0423700-mRNA-1:cds;Parent=Msa0423700-mRNA-1
chr3_2	CDS	73632312	73632374	73632312	ID=Msa0423700-mRNA-1:cds;Parent=Msa0423700-mRNA-1
chr3_2	three_prime_UTR	73632375	73635063	73632375	ID=Msa0423700-mRNA-1:three_prime_utr;Parent=Msa0423700-mRNA-1

Gene Sequence

>Msa0423700

ATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATAACTGATAACACATACTTCAAGGATGAGGTTTTGCAGATGGAATCTACTGTCTTGAATTTTCTGAAATTTGAAATGACTGCCCCAACAATTAAATGCTTCTTGAGAAGATTTGTACGTGCAGCTCAAGGAATTGATGAGGTCCCTTCACTACAACTAGAGTGCTTGACAAATTTTATCGCCGAATTATCTCTGTTGGAGTATAGTATGCTTTGTTATGCTCCATCACTTATAGCAGCTTCTTCAATTTTCCTGGCCAAATATATGCTTTTCCCTGCAATGAAACCATGGAATCCGACATTGCAGCATTACACTCAATACCAGCCTTCTGATTTGTATGCTTGTGTAAAGGATCTCCACCGTCTTTGTTGCAACAGTCCTAATTCTAATTTGCCTGCAATTAAGGAGAAATACAATCAGCACAAGTATAAATATGTTGCCAAGAAGTACTGCCCTCCTTCAATACCTCAAGAATTTTTCCAGAACTGA

Protein sequence

>Msa0423700

MMIASKYEEICAPQVEEFCYITDNTYFKDEVLQMESTVLNFLKFEMTAPTIKCFLRRFVRAAQGIDEVPSLQLECLTNFIAELSLLEYSMLCYAPSLIAASSIFLAKYMLFPAMKPWNPTLQHYTQYQPSDLYACVKDLHRLCCNSPNSNLPAIKEKYNQHKYKYVAKKYCPPSIPQEFFQN*