AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0428110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428110 MtrunA17_Chr3g0131071 91.186 590 31 7 1 586 1 573 0.0 1003
Msa0428110 MtrunA17_Chr8g0385291 70.876 491 119 10 112 586 21 503 0.0 668
Msa0428110 MtrunA17_Chr4g0014901 68.475 387 117 4 199 582 208 592 0.0 546
Msa0428110 MtrunA17_Chr4g0014911 63.081 344 120 2 244 582 121 462 1.94e-158 461
Msa0428110 MtrunA17_Chr2g0293201 54.913 346 146 6 245 583 124 466 6.99e-134 399
Msa0428110 MtrunA17_Chr4g0004981 51.045 335 155 6 245 574 107 437 7.14e-114 347
Msa0428110 MtrunA17_Chr1g0183881 41.379 348 191 7 240 581 124 464 4.85e-91 288
Msa0428110 MtrunA17_Chr7g0243541 41.618 346 148 9 247 586 100 397 8.15e-83 265
Msa0428110 MtrunA17_Chr3g0131581 30.476 210 132 4 260 469 67 262 1.10e-22 98.2
Msa0428110 MtrunA17_Chr8g0385681 30.476 210 132 5 260 469 50 245 1.91e-18 85.5
Msa0428110 MtrunA17_Chr8g0385691 30.000 210 133 5 260 469 47 242 2.57e-18 85.1
Msa0428110 MtrunA17_Chr7g0254621 28.112 249 150 9 235 474 16 244 4.05e-13 70.9
Msa0428110 MtrunA17_Chr3g0144911 28.378 222 134 8 262 469 110 320 1.44e-11 66.6
Msa0428110 MtrunA17_Chr5g0399151 27.948 229 140 8 263 477 116 333 1.88e-11 66.6
Msa0428110 MtrunA17_Chr4g0035391 27.477 222 136 8 262 469 107 317 2.00e-11 67.0
Msa0428110 MtrunA17_Chr1g0155521 27.727 220 138 8 262 469 112 322 4.56e-11 65.9
Msa0428110 MtrunA17_Chr8g0372651 27.149 221 138 8 262 469 79 289 8.60e-11 64.7
Msa0428110 MtrunA17_Chr3g0144891 27.027 222 137 8 262 469 97 307 9.74e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0428110 AT4G09160.1 64.571 350 117 3 238 582 317 664 1.46e-169 497
Msa0428110 AT4G09160.2 64.571 350 117 3 238 582 292 639 1.48e-169 496
Msa0428110 AT4G09160.3 64.571 350 117 3 238 582 292 639 1.81e-169 496
Msa0428110 AT1G72160.1 54.244 483 193 10 116 582 19 489 5.59e-168 487
Msa0428110 AT1G22530.2 43.570 661 256 14 14 581 12 648 1.32e-150 448
Msa0428110 AT1G72150.1 51.606 498 220 10 90 581 91 573 2.79e-149 442
Msa0428110 AT1G22530.1 54.780 387 157 5 196 581 313 682 4.19e-144 432
Msa0428110 AT1G30690.1 41.455 550 267 16 51 585 30 539 3.40e-123 374
Msa0428110 AT1G30690.2 41.455 550 267 16 51 585 30 539 3.40e-123 374
Msa0428110 AT3G51670.1 46.174 379 193 8 213 585 34 407 6.64e-113 343
Msa0428110 AT1G01630.1 30.000 210 133 5 260 469 50 245 2.19e-19 88.6
Msa0428110 AT4G08690.2 26.721 247 159 7 237 478 17 246 1.77e-14 75.1
Msa0428110 AT4G08690.1 26.721 247 159 7 237 478 17 246 1.77e-14 75.1
Msa0428110 AT4G08690.3 26.721 247 159 7 237 478 17 246 1.77e-14 75.1
Msa0428110 AT3G24840.1 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0428110 AT3G24840.6 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0428110 AT3G24840.4 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0428110 AT3G24840.2 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0428110 AT3G24840.7 25.574 305 199 10 191 477 27 321 1.32e-12 70.9
Msa0428110 AT3G24840.3 25.574 305 199 10 191 477 27 321 1.32e-12 70.9
Msa0428110 AT3G24840.5 25.574 305 199 10 191 477 27 321 1.32e-12 70.9
Msa0428110 AT4G34580.2 26.606 218 143 6 262 469 88 298 6.92e-12 68.6
Msa0428110 AT4G34580.1 26.606 218 143 6 262 469 88 298 6.92e-12 68.6
Msa0428110 AT1G19650.1 28.829 222 133 7 262 469 104 314 7.37e-12 68.6
Msa0428110 AT2G21540.6 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0428110 AT2G21540.2 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0428110 AT2G21540.1 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0428110 AT2G21540.4 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0428110 AT2G21540.3 28.571 224 131 10 262 469 95 305 1.32e-11 67.8
Msa0428110 AT2G21540.5 28.571 224 131 10 262 469 95 305 1.32e-11 67.8
Msa0428110 AT4G39170.2 29.148 223 131 9 262 469 108 318 1.88e-11 67.4
Msa0428110 AT2G18180.2 26.957 230 146 9 253 469 71 291 1.94e-11 67.4
Msa0428110 AT4G39170.1 29.148 223 131 9 262 469 108 318 1.98e-11 67.4
Msa0428110 AT4G39180.3 27.273 231 145 8 251 469 87 306 3.02e-11 66.6
Msa0428110 AT4G39180.2 27.273 231 145 8 251 469 87 306 3.02e-11 66.6
Msa0428110 AT2G18180.1 26.957 230 146 9 253 469 71 291 3.04e-11 66.6
Msa0428110 AT4G39180.1 26.866 268 168 10 215 469 54 306 3.10e-11 66.6
Msa0428110 AT1G22180.2 25.896 251 161 6 235 478 18 250 3.27e-11 65.1
Msa0428110 AT1G22180.4 25.896 251 161 6 235 478 18 250 3.27e-11 65.1
Msa0428110 AT1G75170.2 24.889 225 128 6 259 469 43 240 5.19e-11 64.3
Msa0428110 AT1G75170.1 24.889 225 128 6 259 469 43 240 5.19e-11 64.3
Msa0428110 AT1G19650.3 28.829 222 133 7 262 469 104 314 7.06e-11 65.1

Find 173 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAATTTCTTTGTAAATTT+TGG 0.098338 3_2:-78891134 Msa0428110:three_prime_UTR
TCTCCTTCATTTAACAATTT+TGG 0.098979 3_2:-78894089 Msa0428110:five_prime_UTR
CTCGGGCTCTGGGTTGGGCT+TGG 0.133515 3_2:+78893885 None:intergenic
TCATGGGAGCTAAGAGTAAT+TGG 0.180786 3_2:-78891535 Msa0428110:CDS
CCTGTTTGTTATAACATTTA+TGG 0.191442 3_2:-78893046 Msa0428110:CDS
ACCTGTTTGGCTACAAATTC+AGG 0.192401 3_2:+78892788 None:intergenic
TCAAATAACACCGTTATTTC+CGG 0.205164 3_2:-78894258 Msa0428110:five_prime_UTR
TGTGATTCTGCTTCTGCTTC+TGG 0.205662 3_2:+78893616 None:intergenic
CAAAATTGAAGAGTTATTAT+TGG 0.213965 3_2:-78893137 Msa0428110:CDS
AATAACGATGAAAAGTATTT+TGG 0.229828 3_2:+78894061 None:intergenic
CTAAGCAAAGATGGTGAATT+TGG 0.229951 3_2:-78892262 Msa0428110:CDS
TCTTGAGTTGTGGCTATCTT+TGG 0.230004 3_2:+78893994 None:intergenic
GATATATGCAGATGACTTAT+TGG 0.235397 3_2:-78891170 Msa0428110:three_prime_UTR
CTTTGCAACAACTACAAAAT+TGG 0.236225 3_2:-78891409 Msa0428110:CDS
TCGGGCTCTGGGTTGGGCTT+GGG 0.258053 3_2:+78893886 None:intergenic
AAAAGCAAGTTTGTATTTGC+TGG 0.284258 3_2:-78892456 Msa0428110:CDS
ACCAAATTCACCTCAGTAAC+TGG 0.284996 3_2:+78892178 None:intergenic
TTCTGCTTCTGGTGTGGGCT+CGG 0.286758 3_2:+78893627 None:intergenic
GTTCTTGAAATGGAGAATTC+TGG 0.287184 3_2:-78892963 Msa0428110:CDS
GTTCTGTTCATCTTTCTTGT+TGG 0.294746 3_2:+78893576 None:intergenic
AGTGCTTTCTTCTCAGCTTC+AGG 0.302927 3_2:+78893745 None:intergenic
CGGGCCATGGACCCACTTAA+TGG 0.315039 3_2:-78894238 Msa0428110:five_prime_UTR
CCCCATATTGAAACCTCTTC+TGG 0.316394 3_2:+78893283 None:intergenic
TGGTCTTGGAGAAGAGTATT+AGG 0.324429 3_2:-78892943 Msa0428110:CDS
AGAGAGAAAAGTTCTTGAAA+TGG 0.327651 3_2:-78892973 Msa0428110:CDS
ACAAGCATATAGATCAAATT+AGG 0.328233 3_2:+78891106 None:intergenic
TCCACCACCTTTGGTTCCTC+TGG 0.337500 3_2:+78893337 None:intergenic
CCATAAATGTTATAACAAAC+AGG 0.338368 3_2:+78893046 None:intergenic
TAGAAGAGTCTCAGCTGATT+TGG 0.338628 3_2:+78892428 None:intergenic
CGTTGGCTTCAAATTCTAAC+AGG 0.344786 3_2:-78894327 Msa0428110:five_prime_UTR
GTCTGTGCCAGATTGGAATC+TGG 0.348569 3_2:+78894205 None:intergenic
TTCTTTCACTTTGAAGTCTC+TGG 0.352608 3_2:+78893204 None:intergenic
TTCTTGTTGGTCTCTTCAGC+AGG 0.368545 3_2:+78893589 None:intergenic
AACAGGCTGGGCTATGTAAC+TGG 0.372569 3_2:-78894310 Msa0428110:five_prime_UTR
GAGCAACTTTCAGTCAAATA+TGG 0.373495 3_2:-78892289 Msa0428110:CDS
GGAGAAGAGTATTAGGAAGT+TGG 0.378620 3_2:-78892936 Msa0428110:CDS
GTCTTAATCAAAATCAACTA+TGG 0.378649 3_2:-78894028 Msa0428110:exon
GAAGAAGCTTCCACCACCTT+TGG 0.382704 3_2:+78893328 None:intergenic
AACCAGAAGAGGTTTCAATA+TGG 0.384526 3_2:-78893285 Msa0428110:CDS
AAGCAATTGAAGGGCTTGTT+TGG 0.391690 3_2:+78892823 None:intergenic
TCAGCTTCAGTTGTTGTTGT+TGG 0.393012 3_2:+78893484 None:intergenic
AATCAGCTGAGACTCTTCTA+AGG 0.396379 3_2:-78892425 Msa0428110:intron
CTTTCTTAATCAGAAGTTGA+AGG 0.397210 3_2:+78891307 None:intergenic
TCCTGAATTTGTAGCCAAAC+AGG 0.397889 3_2:-78892789 Msa0428110:intron
TCTGCTTCTGCTTCTGGTGT+GGG 0.403305 3_2:+78893622 None:intergenic
TCTGCTTCTGGTGTGGGCTC+GGG 0.406078 3_2:+78893628 None:intergenic
CAAATAACACCGTTATTTCC+GGG 0.410392 3_2:-78894257 Msa0428110:five_prime_UTR
AACTACAAAATTGGTGAACC+TGG 0.412559 3_2:-78891400 Msa0428110:CDS
GCTAGTAGGCCCGCCGTGTT+TGG 0.413300 3_2:-78894288 Msa0428110:five_prime_UTR
GGCTTCAAATTCTAACAGGC+TGG 0.417907 3_2:-78894323 Msa0428110:five_prime_UTR
CTTAGAGCTTGAATTGTCAA+TGG 0.418583 3_2:+78891363 None:intergenic
GTAAAGTATTAGTACCTGTT+TGG 0.422219 3_2:+78892775 None:intergenic
TGTTAAATGAAGGAGATTGA+TGG 0.423877 3_2:+78894096 None:intergenic
TTTGTTCTTTGTGTAAGAAA+AGG 0.424626 3_2:+78892477 None:intergenic
ACTTGCTCCTCCTCAGCAAC+AGG 0.426842 3_2:+78893964 None:intergenic
TTAATCAGAAGTTGAAGGCT+TGG 0.430333 3_2:+78891312 None:intergenic
TCTGTGTCCCAATAGTAAAA+AGG 0.437051 3_2:-78891037 Msa0428110:three_prime_UTR
GAGAAAACTGTTTACATGCA+TGG 0.439519 3_2:-78893088 Msa0428110:CDS
TCTGTGCCAGATTGGAATCT+GGG 0.439720 3_2:+78894206 None:intergenic
GGATAGAGGGGTTGTTTCGT+GGG 0.440935 3_2:+78894144 None:intergenic
GATTGGAATCTGGGCTCAAC+AGG 0.442208 3_2:+78894215 None:intergenic
TCAGTTGTTGTTGTTGGTAG+TGG 0.442852 3_2:+78893490 None:intergenic
TTCTGCTTCTGCTTCTGGTG+TGG 0.443749 3_2:+78893621 None:intergenic
ACTGGGCTTGGAGTAGTTGA+AGG 0.447024 3_2:+78893664 None:intergenic
TTCTTTGTCAGCTGGAACAG+TGG 0.452483 3_2:+78893918 None:intergenic
TCCAGAGTCTGGTTCGTTCA+AGG 0.461611 3_2:-78893794 Msa0428110:CDS
AGCTTGTCTAAGCTCCCATT+TGG 0.463609 3_2:+78892847 None:intergenic
GTGTGATGGGGATAGGATAG+AGG 0.466128 3_2:+78894130 None:intergenic
ACCAGAAGAGGTTTCAATAT+GGG 0.467828 3_2:-78893284 Msa0428110:CDS
CATGGGAGCTAAGAGTAATT+GGG 0.468056 3_2:-78891534 Msa0428110:CDS
AATTATCTTGAAGCAATTGA+AGG 0.470059 3_2:+78892813 None:intergenic
GAAATGGAGAATTCTGGTCT+TGG 0.470951 3_2:-78892957 Msa0428110:CDS
ATTCTCCTGGACCTACCAAA+TGG 0.471318 3_2:-78892862 Msa0428110:CDS
AGGATAGAGGGGTTGTTTCG+TGG 0.476967 3_2:+78894143 None:intergenic
AATGATCTTAAGAATTCTCC+TGG 0.479288 3_2:-78892875 Msa0428110:CDS
AGGACCAGTCTGTGCCAGAT+TGG 0.480098 3_2:+78894198 None:intergenic
GTGTAGCTTCCTTCTGAACT+TGG 0.481631 3_2:+78891481 None:intergenic
AGCTCCCATTTGGTAGGTCC+AGG 0.482236 3_2:+78892857 None:intergenic
TTGTAGTTGTTGCAAAGCAC+TGG 0.484047 3_2:+78891415 None:intergenic
TGTTAATCATTATCTTGTGT+TGG 0.484728 3_2:-78891278 Msa0428110:three_prime_UTR
GGCAGTGCCTGTTGCTGAGG+AGG 0.486650 3_2:-78893971 Msa0428110:CDS
TCATCAGATTCTTTGTCAGC+TGG 0.490379 3_2:+78893910 None:intergenic
TTATTATTGGATGAAAACTT+AGG 0.493600 3_2:-78893124 Msa0428110:CDS
AAGGAAGAGAGCACTATTGT+TGG 0.493837 3_2:-78893775 Msa0428110:CDS
TCACCAAAATTGTTAAATGA+AGG 0.494140 3_2:+78894086 None:intergenic
TGCAGAACTGTCTACTCTCA+TGG 0.494143 3_2:-78891552 Msa0428110:intron
GGGCTATGTAACTGGCTAGT+AGG 0.494657 3_2:-78894302 Msa0428110:five_prime_UTR
ACACCGTTATTTCCGGGCCA+TGG 0.497800 3_2:-78894251 Msa0428110:five_prime_UTR
AGATGAACAGAACAATGAAC+AGG 0.499148 3_2:-78893566 Msa0428110:CDS
TGTCTAAGCTCCCATTTGGT+AGG 0.502674 3_2:+78892851 None:intergenic
GGAGAGTGGTGTAGTGTGAT+GGG 0.505695 3_2:+78894117 None:intergenic
TTCTCCTGGACCTACCAAAT+GGG 0.508042 3_2:-78892861 Msa0428110:CDS
CATTAAGTGGGTCCATGGCC+CGG 0.511063 3_2:+78894239 None:intergenic
TATTTGACTGAAAGTTGCTC+AGG 0.515624 3_2:+78892292 None:intergenic
GGTCCATGGCCCGGAAATAA+CGG 0.519376 3_2:+78894248 None:intergenic
ATCAAAATCAACTATGGCTG+AGG 0.520145 3_2:-78894022 Msa0428110:exon
TATGGTGGACTAAGCAAAGA+TGG 0.520271 3_2:-78892271 Msa0428110:CDS
GCTTCTTCTGTAGATGAAGA+TGG 0.521848 3_2:-78893415 Msa0428110:CDS
GTTGTTGTTGTTGGTAGTGG+TGG 0.522925 3_2:+78893493 None:intergenic
AAAGAGTGGGGCGGATGAGA+AGG 0.524597 3_2:+78894178 None:intergenic
CTGTTAGAATTTGAAGCCAA+CGG 0.527127 3_2:+78894328 None:intergenic
TCCTTGAACGAACCAGACTC+TGG 0.528848 3_2:+78893793 None:intergenic
ATGGTGAGAACCACTTTCCC+AGG 0.529543 3_2:+78891382 None:intergenic
GTTGAGCCCAGATTCCAATC+TGG 0.532116 3_2:-78894212 Msa0428110:five_prime_UTR
TTGTTGGTCTCTTCAGCAGG+TGG 0.536894 3_2:+78893592 None:intergenic
GGGAAGCAGTTATAAAGAGT+GGG 0.537800 3_2:+78894165 None:intergenic
AATTGGTGAACCTGGGAAAG+TGG 0.538369 3_2:-78891392 Msa0428110:CDS
TCCAGAGGAACCAAAGGTGG+TGG 0.538723 3_2:-78893338 Msa0428110:CDS
CCAGAAGAGGTTTCAATATG+GGG 0.547282 3_2:-78893283 Msa0428110:CDS
GATTCCAATCTGGCACAGAC+TGG 0.548284 3_2:-78894202 Msa0428110:five_prime_UTR
CAGGCCATTAAGTGGGTCCA+TGG 0.548475 3_2:+78894234 None:intergenic
TGGAGAGTGGTGTAGTGTGA+TGG 0.549657 3_2:+78894116 None:intergenic
TGGTGTAGTGTGATGGGGAT+AGG 0.550513 3_2:+78894123 None:intergenic
GAGTTTGTACCAAGTTCAGA+AGG 0.553555 3_2:-78891490 Msa0428110:CDS
GCTTCAAATTCTAACAGGCT+GGG 0.554058 3_2:-78894322 Msa0428110:five_prime_UTR
ATTATCTTGAAGCAATTGAA+GGG 0.556517 3_2:+78892814 None:intergenic
GGGTTGGAAAGAAATGTGAA+TGG 0.560559 3_2:-78894353 None:intergenic
AGAAATGTGAATGGAACCGT+TGG 0.566113 3_2:-78894344 Msa0428110:five_prime_UTR
ACAACAACAACAACCAGAAG+AGG 0.568417 3_2:-78893296 Msa0428110:CDS
GACTCTCTACCAAACACGGC+GGG 0.569158 3_2:+78894279 None:intergenic
GGCTCAACAGGCCATTAAGT+GGG 0.569499 3_2:+78894227 None:intergenic
GGGCTCAACAGGCCATTAAG+TGG 0.571417 3_2:+78894226 None:intergenic
TGAAGGAGATTGATGGAGAG+TGG 0.575247 3_2:+78894103 None:intergenic
TTATGGAGAGTTTGATAACA+AGG 0.578141 3_2:-78893029 Msa0428110:CDS
ATGCATGGATATGACAAAGA+AGG 0.578689 3_2:-78893073 Msa0428110:CDS
AGAGGCAGTGCCTGTTGCTG+AGG 0.578794 3_2:-78893974 Msa0428110:CDS
CTCAGTAACTGGAAATTCCA+CGG 0.580825 3_2:+78892189 None:intergenic
GGGGAAGCAGTTATAAAGAG+TGG 0.582308 3_2:+78894164 None:intergenic
GATAGAGGGGTTGTTTCGTG+GGG 0.588228 3_2:+78894145 None:intergenic
GTTCTATCGTCTGCAAGAAG+TGG 0.593136 3_2:+78893256 None:intergenic
AAAGATAGCCACAACTCAAG+AGG 0.593760 3_2:-78893992 Msa0428110:CDS
GGTGGTGGAAGCTTCTTCAC+CGG 0.595988 3_2:-78893323 Msa0428110:CDS
ACTGGGCTTTGATACCTCCT+CGG 0.596592 3_2:+78893831 None:intergenic
TGTGATGGGGATAGGATAGA+GGG 0.596822 3_2:+78894131 None:intergenic
AGGCACTGCCTCTTGAGTTG+TGG 0.597680 3_2:+78893984 None:intergenic
ACTACAAAATTGGTGAACCT+GGG 0.600044 3_2:-78891399 Msa0428110:CDS
TGATCAAGAACACTATCCGT+TGG 0.601471 3_2:-78893171 Msa0428110:CDS
GCAGAACTGTCTACTCTCAT+GGG 0.603658 3_2:-78891551 Msa0428110:intron
TGTTGCTGAGGAGGAGCAAG+TGG 0.604048 3_2:-78893962 Msa0428110:CDS
ATTGGGTGGGACATAAGCTA+TGG 0.608625 3_2:-78891517 Msa0428110:CDS
AGCAGAAAAGAAAGAAACAG+AGG 0.609236 3_2:-78893443 Msa0428110:CDS
CAACTTTCAGTCAAATATGG+TGG 0.612687 3_2:-78892286 Msa0428110:CDS
ATCAGTTCCAGAGGAACCAA+AGG 0.614270 3_2:-78893344 Msa0428110:CDS
ACAATAGTGCAAATACCACC+AGG 0.619339 3_2:+78892905 None:intergenic
AAACAACACTGCTGAGACCG+AGG 0.619853 3_2:-78893848 Msa0428110:CDS
GGGAGCTAAGAGTAATTGGG+TGG 0.623613 3_2:-78891531 Msa0428110:CDS
ATTTGACTCTCTACCAAACA+CGG 0.624946 3_2:+78894275 None:intergenic
AGTTCCAGAGGAACCAAAGG+TGG 0.628144 3_2:-78893341 Msa0428110:CDS
CATAAATGTTATAACAAACA+GGG 0.628980 3_2:+78893047 None:intergenic
AGAGTCTCAGCTGATTTGGA+AGG 0.633487 3_2:+78892432 None:intergenic
TTGAAGGCTTGGTCTTCAAG+CGG 0.637531 3_2:+78891323 None:intergenic
AGGTGTTTATCAATGTGCCA+TGG 0.641137 3_2:-78892530 Msa0428110:CDS
TGGAGAGTTTGATAACAAGG+AGG 0.651054 3_2:-78893026 Msa0428110:CDS
TGTAGCTTCATCAGTTCCAG+AGG 0.651074 3_2:-78893353 Msa0428110:CDS
CAGAAGAGGTTTCAATATGG+GGG 0.653215 3_2:-78893282 Msa0428110:CDS
GAGAGTGGTGTAGTGTGATG+GGG 0.658399 3_2:+78894118 None:intergenic
CGTGGAATTTCCAGTTACTG+AGG 0.660408 3_2:-78892188 Msa0428110:intron
AGAAATTACAGTGAGGCCTG+CGG 0.663813 3_2:-78892221 Msa0428110:CDS
GGAGCTAAGAGTAATTGGGT+GGG 0.668364 3_2:-78891530 Msa0428110:CDS
TGCTGAGGAGGAGCAAGTGG+TGG 0.671033 3_2:-78893959 Msa0428110:CDS
AGCAGTTATAAAGAGTGGGG+CGG 0.687982 3_2:+78894169 None:intergenic
GTGATGGGGATAGGATAGAG+GGG 0.699837 3_2:+78894132 None:intergenic
AATAGTGCAAATACCACCAG+GGG 0.702016 3_2:+78892907 None:intergenic
CAATAGTGCAAATACCACCA+GGG 0.705753 3_2:+78892906 None:intergenic
TGTTTATCAATGTGCCATGG+TGG 0.706720 3_2:-78892527 Msa0428110:CDS
GGAAGCAGTTATAAAGAGTG+GGG 0.706820 3_2:+78894166 None:intergenic
GGGCTTGGAGTAGTTGAAGG+TGG 0.709064 3_2:+78893667 None:intergenic
TTCACAGCTAAGTACCACCA+TGG 0.716803 3_2:+78892513 None:intergenic
GCCTGCGGCAAAACACACCG+TGG 0.718457 3_2:-78892206 Msa0428110:CDS
TGACTCTCTACCAAACACGG+CGG 0.728466 3_2:+78894278 None:intergenic
CAACACTGCTGAGACCGAGG+AGG 0.737926 3_2:-78893845 Msa0428110:CDS
CTGTTACAGAAATTACAGTG+AGG 0.780489 3_2:-78892228 Msa0428110:CDS
GAGGAGGTATCAAAGCCCAG+TGG 0.800821 3_2:-78893829 Msa0428110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAGTATTATCTATTT+CGG + chr3_2:78893733-78893752 None:intergenic 10.0%
!!! ATAAATTTCTTTGTAAATTT+TGG - chr3_2:78894221-78894240 Msa0428110:five_prime_UTR 10.0%
!!! TTTATTTGATTTTGTTTTGT+AGG - chr3_2:78892805-78892824 Msa0428110:CDS 15.0%
!!! ATGACACATTAATTTTTTTA+GGG - chr3_2:78893549-78893568 Msa0428110:CDS 15.0%
!!! ATGTTTCTTTGATATTTTAA+AGG - chr3_2:78893697-78893716 Msa0428110:CDS 15.0%
!!! TGTTTCTTTGATATTTTAAA+GGG - chr3_2:78893698-78893717 Msa0428110:CDS 15.0%
!!! AATAACGATGAAAAGTATTT+TGG + chr3_2:78891297-78891316 None:intergenic 20.0%
!! CAAAATTGAAGAGTTATTAT+TGG - chr3_2:78892218-78892237 Msa0428110:CDS 20.0%
!! TTATTATTGGATGAAAACTT+AGG - chr3_2:78892231-78892250 Msa0428110:CDS 20.0%
!! CATAAATGTTATAACAAACA+GGG + chr3_2:78892311-78892330 None:intergenic 20.0%
!! AAATTTAAGAACAACAATTG+TGG + chr3_2:78892715-78892734 None:intergenic 20.0%
!!! TAGTGTCTTAATTTGTTTTA+TGG - chr3_2:78893021-78893040 Msa0428110:CDS 20.0%
!! ACAAATTGTTGCATAAAATA+AGG + chr3_2:78893355-78893374 None:intergenic 20.0%
!! AAGGAATCATAAAATAAACA+TGG - chr3_2:78893418-78893437 Msa0428110:CDS 20.0%
!! CTAAAAAAATTAATGTGTCA+TGG + chr3_2:78893550-78893569 None:intergenic 20.0%
!!! CATGACACATTAATTTTTTT+AGG - chr3_2:78893548-78893567 Msa0428110:CDS 20.0%
!!! TTAATTTTTTTAGGGTTCAA+AGG - chr3_2:78893557-78893576 Msa0428110:CDS 20.0%
!!! TTCTTTTTGCTGTATTATTT+TGG - chr3_2:78894118-78894137 Msa0428110:five_prime_UTR 20.0%
!!! TATTTTGGTTATTACTATTG+AGG - chr3_2:78894133-78894152 Msa0428110:five_prime_UTR 20.0%
!!! ATTTTGGTTATTACTATTGA+GGG - chr3_2:78894134-78894153 Msa0428110:five_prime_UTR 20.0%
!!! AATTTCTTTGTAAATTTTGG+TGG - chr3_2:78894224-78894243 Msa0428110:five_prime_UTR 20.0%
!!! ATTTCTTTGTAAATTTTGGT+GGG - chr3_2:78894225-78894244 Msa0428110:five_prime_UTR 20.0%
!! TCTCCTTCATTTAACAATTT+TGG - chr3_2:78891266-78891285 Msa0428110:three_prime_UTR 25.0%
! TCACCAAAATTGTTAAATGA+AGG + chr3_2:78891272-78891291 None:intergenic 25.0%
! GTCTTAATCAAAATCAACTA+TGG - chr3_2:78891327-78891346 Msa0428110:CDS 25.0%
! CCATAAATGTTATAACAAAC+AGG + chr3_2:78892312-78892331 None:intergenic 25.0%
!!! CCTGTTTGTTATAACATTTA+TGG - chr3_2:78892309-78892328 Msa0428110:intron 25.0%
! ATTATCTTGAAGCAATTGAA+GGG + chr3_2:78892544-78892563 None:intergenic 25.0%
! AATTATCTTGAAGCAATTGA+AGG + chr3_2:78892545-78892564 None:intergenic 25.0%
! GCAATTAATATAACTGAAAC+TGG + chr3_2:78892623-78892642 None:intergenic 25.0%
! TTTGTTCTTTGTGTAAGAAA+AGG + chr3_2:78892881-78892900 None:intergenic 25.0%
! AATTAAGACACTAACAAACT+AGG + chr3_2:78893014-78893033 None:intergenic 25.0%
!!! TTTTTTAGATTGAGTATCCA+AGG - chr3_2:78893243-78893262 Msa0428110:CDS 25.0%
!! TTTTTAGATTGAGTATCCAA+GGG - chr3_2:78893244-78893263 Msa0428110:CDS 25.0%
! AATATAAATATGAAGACCAG+AGG + chr3_2:78893306-78893325 None:intergenic 25.0%
! TAAACAAACAAAAGAGGAAA+AGG + chr3_2:78893332-78893351 None:intergenic 25.0%
! ATAAGGTAAACAAACAAAAG+AGG + chr3_2:78893338-78893357 None:intergenic 25.0%
!!! ATGCATTGAAATTTTGTTGT+TGG - chr3_2:78893772-78893791 Msa0428110:CDS 25.0%
!!! TGCATTGAAATTTTGTTGTT+GGG - chr3_2:78893773-78893792 Msa0428110:CDS 25.0%
! TGTTAATCATTATCTTGTGT+TGG - chr3_2:78894077-78894096 Msa0428110:five_prime_UTR 25.0%
!!! TTTTGGTTATTACTATTGAG+GGG - chr3_2:78894135-78894154 Msa0428110:five_prime_UTR 25.0%
!!! TTTCTTTGTAAATTTTGGTG+GGG - chr3_2:78894226-78894245 Msa0428110:five_prime_UTR 25.0%
! ACAAGCATATAGATCAAATT+AGG + chr3_2:78894252-78894271 None:intergenic 25.0%
!! CGTTTTTCCTTTTTACTATT+GGG + chr3_2:78894328-78894347 None:intergenic 25.0%
!!! TCGTTTTTCCTTTTTACTAT+TGG + chr3_2:78894329-78894348 None:intergenic 25.0%
! TCAAATAACACCGTTATTTC+CGG - chr3_2:78891097-78891116 Msa0428110:three_prime_UTR 30.0%
TGTTAAATGAAGGAGATTGA+TGG + chr3_2:78891262-78891281 None:intergenic 30.0%
! TTCTTTTCTGCTTCTTCTTT+TGG + chr3_2:78891904-78891923 None:intergenic 30.0%
! TTTTGAACTCTTTTCTCCAA+CGG + chr3_2:78892203-78892222 None:intergenic 30.0%
! TTATGGAGAGTTTGATAACA+AGG - chr3_2:78892326-78892345 Msa0428110:intron 30.0%
AGAGAGAAAAGTTCTTGAAA+TGG - chr3_2:78892382-78892401 Msa0428110:intron 30.0%
AATGATCTTAAGAATTCTCC+TGG - chr3_2:78892480-78892499 Msa0428110:CDS 30.0%
! GTAAAGTATTAGTACCTGTT+TGG + chr3_2:78892583-78892602 None:intergenic 30.0%
AAAAGCAAGTTTGTATTTGC+TGG - chr3_2:78892899-78892918 Msa0428110:CDS 30.0%
AGATACTAGATGCTTTATCA+AGG - chr3_2:78893399-78893418 Msa0428110:CDS 30.0%
!! ATGGTCATTTTGTTAAGTCA+TGG + chr3_2:78893531-78893550 None:intergenic 30.0%
! GTCTATGATTTTGCTAAACT+TGG + chr3_2:78893626-78893645 None:intergenic 30.0%
!! AAGCAATTTTTCTAGTCTTC+TGG + chr3_2:78893909-78893928 None:intergenic 30.0%
CTTTGCAACAACTACAAAAT+TGG - chr3_2:78893946-78893965 Msa0428110:CDS 30.0%
CTTTCTTAATCAGAAGTTGA+AGG + chr3_2:78894051-78894070 None:intergenic 30.0%
GATATATGCAGATGACTTAT+TGG - chr3_2:78894185-78894204 Msa0428110:five_prime_UTR 30.0%
!! GACTTATTGGTCTGTTTTAT+TGG - chr3_2:78894198-78894217 Msa0428110:five_prime_UTR 30.0%
! CTGTTAGAATTTGAAGCCAA+CGG + chr3_2:78891030-78891049 None:intergenic 35.0%
ATTTGACTCTCTACCAAACA+CGG + chr3_2:78891083-78891102 None:intergenic 35.0%
! CAAATAACACCGTTATTTCC+GGG - chr3_2:78891098-78891117 Msa0428110:three_prime_UTR 35.0%
ATCAAAATCAACTATGGCTG+AGG - chr3_2:78891333-78891352 Msa0428110:CDS 35.0%
!!! GGAATTTTTTCATCACCACT+GGG + chr3_2:78891544-78891563 None:intergenic 35.0%
!!! TGGAATTTTTTCATCACCAC+TGG + chr3_2:78891545-78891564 None:intergenic 35.0%
GATGAAAAAATTCCAGAGTC+TGG - chr3_2:78891550-78891569 Msa0428110:CDS 35.0%
! TTTTGTTCTTTAACTGGGCT+TGG + chr3_2:78891706-78891725 None:intergenic 35.0%
GTTCTGTTCATCTTTCTTGT+TGG + chr3_2:78891782-78891801 None:intergenic 35.0%
AGATGAACAGAACAATGAAC+AGG - chr3_2:78891789-78891808 Msa0428110:intron 35.0%
AGCAGAAAAGAAAGAAACAG+AGG - chr3_2:78891912-78891931 Msa0428110:intron 35.0%
AACCAGAAGAGGTTTCAATA+TGG - chr3_2:78892070-78892089 Msa0428110:intron 35.0%
ACCAGAAGAGGTTTCAATAT+GGG - chr3_2:78892071-78892090 Msa0428110:intron 35.0%
!! TTCTTTCACTTTGAAGTCTC+TGG + chr3_2:78892154-78892173 None:intergenic 35.0%
GAGAAAACTGTTTACATGCA+TGG - chr3_2:78892267-78892286 Msa0428110:CDS 35.0%
ATGCATGGATATGACAAAGA+AGG - chr3_2:78892282-78892301 Msa0428110:CDS 35.0%
GTTCTTGAAATGGAGAATTC+TGG - chr3_2:78892392-78892411 Msa0428110:intron 35.0%
CTGATACCACTAAATAGATG+CGG - chr3_2:78892689-78892708 Msa0428110:intron 35.0%
TATTTGACTGAAAGTTGCTC+AGG + chr3_2:78893066-78893085 None:intergenic 35.0%
GAGCAACTTTCAGTCAAATA+TGG - chr3_2:78893066-78893085 Msa0428110:CDS 35.0%
CAACTTTCAGTCAAATATGG+TGG - chr3_2:78893069-78893088 Msa0428110:CDS 35.0%
CTAAGCAAAGATGGTGAATT+TGG - chr3_2:78893093-78893112 Msa0428110:CDS 35.0%
CTGTTACAGAAATTACAGTG+AGG - chr3_2:78893127-78893146 Msa0428110:CDS 35.0%
! TTACCTTTCTGTGTTTTGTC+AGG - chr3_2:78893211-78893230 Msa0428110:CDS 35.0%
AATCCTGACAAAACACAGAA+AGG + chr3_2:78893217-78893236 None:intergenic 35.0%
! TGTGTTTTGTCAGGATTGAT+TGG - chr3_2:78893220-78893239 Msa0428110:CDS 35.0%
TGGATTGTGTAATCTTTCCT+AGG - chr3_2:78893277-78893296 Msa0428110:CDS 35.0%
ATCTAGTATCTCTCAAGTCA+GGG + chr3_2:78893390-78893409 None:intergenic 35.0%
GGAAACAGACATACTTCAAT+TGG - chr3_2:78893439-78893458 Msa0428110:CDS 35.0%
! TGGCATTGTCATTGTGATTT+TGG + chr3_2:78893593-78893612 None:intergenic 35.0%
AACTACAAAATTGGTGAACC+TGG - chr3_2:78893955-78893974 Msa0428110:CDS 35.0%
ACTACAAAATTGGTGAACCT+GGG - chr3_2:78893956-78893975 Msa0428110:CDS 35.0%
CTTAGAGCTTGAATTGTCAA+TGG + chr3_2:78893995-78894014 None:intergenic 35.0%
TTAATCAGAAGTTGAAGGCT+TGG + chr3_2:78894046-78894065 None:intergenic 35.0%
TCTGTGTCCCAATAGTAAAA+AGG - chr3_2:78894318-78894337 Msa0428110:five_prime_UTR 35.0%
AGAAATGTGAATGGAACCGT+TGG - chr3_2:78891011-78891030 Msa0428110:three_prime_UTR 40.0%
!! CGTTGGCTTCAAATTCTAAC+AGG - chr3_2:78891028-78891047 Msa0428110:three_prime_UTR 40.0%
GCTTCAAATTCTAACAGGCT+GGG - chr3_2:78891033-78891052 Msa0428110:three_prime_UTR 40.0%
GGAAGCAGTTATAAAGAGTG+GGG + chr3_2:78891192-78891211 None:intergenic 40.0%
GGGAAGCAGTTATAAAGAGT+GGG + chr3_2:78891193-78891212 None:intergenic 40.0%
! TCTTGAGTTGTGGCTATCTT+TGG + chr3_2:78891364-78891383 None:intergenic 40.0%
AAAGATAGCCACAACTCAAG+AGG - chr3_2:78891363-78891382 Msa0428110:CDS 40.0%
TCATCAGATTCTTTGTCAGC+TGG + chr3_2:78891448-78891467 None:intergenic 40.0%
!! TTTTCAACGGGCTTTTTCTC+GGG + chr3_2:78891490-78891509 None:intergenic 40.0%
!! GTTTTCAACGGGCTTTTTCT+CGG + chr3_2:78891491-78891510 None:intergenic 40.0%
!!! TCAGCAGTGTTGTTTTCAAC+GGG + chr3_2:78891502-78891521 None:intergenic 40.0%
!!! CTCAGCAGTGTTGTTTTCAA+CGG + chr3_2:78891503-78891522 None:intergenic 40.0%
!! AAGGAAGAGAGCACTATTGT+TGG - chr3_2:78891580-78891599 Msa0428110:intron 40.0%
! CGGGCTTTTGTTCTTTAACT+GGG + chr3_2:78891711-78891730 None:intergenic 40.0%
! TCGGGCTTTTGTTCTTTAAC+TGG + chr3_2:78891712-78891731 None:intergenic 40.0%
! TCAGTTGTTGTTGTTGGTAG+TGG + chr3_2:78891868-78891887 None:intergenic 40.0%
! TCAGCTTCAGTTGTTGTTGT+TGG + chr3_2:78891874-78891893 None:intergenic 40.0%
GCTTCTTCTGTAGATGAAGA+TGG - chr3_2:78891940-78891959 Msa0428110:intron 40.0%
! GGTTGTTGTTGTTGTTGTTC+CGG + chr3_2:78892054-78892073 None:intergenic 40.0%
ACAACAACAACAACCAGAAG+AGG - chr3_2:78892059-78892078 Msa0428110:intron 40.0%
CCAGAAGAGGTTTCAATATG+GGG - chr3_2:78892072-78892091 Msa0428110:intron 40.0%
CAGAAGAGGTTTCAATATGG+GGG - chr3_2:78892073-78892092 Msa0428110:intron 40.0%
TGATCAAGAACACTATCCGT+TGG - chr3_2:78892184-78892203 Msa0428110:intron 40.0%
! TGGAGAGTTTGATAACAAGG+AGG - chr3_2:78892329-78892348 Msa0428110:intron 40.0%
GAAATGGAGAATTCTGGTCT+TGG - chr3_2:78892398-78892417 Msa0428110:intron 40.0%
!! TGGTCTTGGAGAAGAGTATT+AGG - chr3_2:78892412-78892431 Msa0428110:intron 40.0%
!! GGAGAAGAGTATTAGGAAGT+TGG - chr3_2:78892419-78892438 Msa0428110:intron 40.0%
AATAGTGCAAATACCACCAG+GGG + chr3_2:78892451-78892470 None:intergenic 40.0%
CAATAGTGCAAATACCACCA+GGG + chr3_2:78892452-78892471 None:intergenic 40.0%
ACAATAGTGCAAATACCACC+AGG + chr3_2:78892453-78892472 None:intergenic 40.0%
! AAGCAATTGAAGGGCTTGTT+TGG + chr3_2:78892535-78892554 None:intergenic 40.0%
TCCTGAATTTGTAGCCAAAC+AGG - chr3_2:78892566-78892585 Msa0428110:intron 40.0%
ACCTGTTTGGCTACAAATTC+AGG + chr3_2:78892570-78892589 None:intergenic 40.0%
CGCATCTATTTAGTGGTATC+AGG + chr3_2:78892691-78892710 None:intergenic 40.0%
AGGTGTTTATCAATGTGCCA+TGG - chr3_2:78892825-78892844 Msa0428110:CDS 40.0%
TGTTTATCAATGTGCCATGG+TGG - chr3_2:78892828-78892847 Msa0428110:CDS 40.0%
TAGAAGAGTCTCAGCTGATT+TGG + chr3_2:78892930-78892949 None:intergenic 40.0%
AATCAGCTGAGACTCTTCTA+AGG - chr3_2:78892930-78892949 Msa0428110:CDS 40.0%
!! CTGAGACTCTTCTAAGGTAA+AGG - chr3_2:78892936-78892955 Msa0428110:CDS 40.0%
!! TATGGTGGACTAAGCAAAGA+TGG - chr3_2:78893084-78893103 Msa0428110:CDS 40.0%
CTCAGTAACTGGAAATTCCA+CGG + chr3_2:78893169-78893188 None:intergenic 40.0%
TCCAGTTACTGAGGTGAATT+TGG - chr3_2:78893176-78893195 Msa0428110:CDS 40.0%
ACCAAATTCACCTCAGTAAC+TGG + chr3_2:78893180-78893199 None:intergenic 40.0%
AATCTTTCCTAGGATTCCTC+TGG - chr3_2:78893287-78893306 Msa0428110:CDS 40.0%
CATCTAGTATCTCTCAAGTC+AGG + chr3_2:78893391-78893410 None:intergenic 40.0%
AATGACAATGCCACGTGATT+TGG - chr3_2:78893600-78893619 Msa0428110:CDS 40.0%
TCATGGGAGCTAAGAGTAAT+TGG - chr3_2:78893820-78893839 Msa0428110:CDS 40.0%
CATGGGAGCTAAGAGTAATT+GGG - chr3_2:78893821-78893840 Msa0428110:CDS 40.0%
GAGTTTGTACCAAGTTCAGA+AGG - chr3_2:78893865-78893884 Msa0428110:CDS 40.0%
TTGTAGTTGTTGCAAAGCAC+TGG + chr3_2:78893943-78893962 None:intergenic 40.0%
GGCTTCAAATTCTAACAGGC+TGG - chr3_2:78891032-78891051 Msa0428110:three_prime_UTR 45.0%
TCTGTGCCAGATTGGAATCT+GGG + chr3_2:78891152-78891171 None:intergenic 45.0%
AGCAGTTATAAAGAGTGGGG+CGG + chr3_2:78891189-78891208 None:intergenic 45.0%
GGGGAAGCAGTTATAAAGAG+TGG + chr3_2:78891194-78891213 None:intergenic 45.0%
! TGTGATGGGGATAGGATAGA+GGG + chr3_2:78891227-78891246 None:intergenic 45.0%
TGAAGGAGATTGATGGAGAG+TGG + chr3_2:78891255-78891274 None:intergenic 45.0%
TTCTTTGTCAGCTGGAACAG+TGG + chr3_2:78891440-78891459 None:intergenic 45.0%
AGTGCTTTCTTCTCAGCTTC+AGG + chr3_2:78891613-78891632 None:intergenic 45.0%
TGTGATTCTGCTTCTGCTTC+TGG + chr3_2:78891742-78891761 None:intergenic 45.0%
! TTCTTGTTGGTCTCTTCAGC+AGG + chr3_2:78891769-78891788 None:intergenic 45.0%
!! GTTGTTGTTGTTGGTAGTGG+TGG + chr3_2:78891865-78891884 None:intergenic 45.0%
TGTAGCTTCATCAGTTCCAG+AGG - chr3_2:78892002-78892021 Msa0428110:intron 45.0%
ATCAGTTCCAGAGGAACCAA+AGG - chr3_2:78892011-78892030 Msa0428110:intron 45.0%
CCCCATATTGAAACCTCTTC+TGG + chr3_2:78892075-78892094 None:intergenic 45.0%
GTTCTATCGTCTGCAAGAAG+TGG + chr3_2:78892102-78892121 None:intergenic 45.0%
! AGGAAGTTGGATTTTACCCC+TGG - chr3_2:78892432-78892451 Msa0428110:CDS 45.0%
! AAGTTGGATTTTACCCCTGG+TGG - chr3_2:78892435-78892454 Msa0428110:CDS 45.0%
ATTCTCCTGGACCTACCAAA+TGG - chr3_2:78892493-78892512 Msa0428110:CDS 45.0%
TTCTCCTGGACCTACCAAAT+GGG - chr3_2:78892494-78892513 Msa0428110:CDS 45.0%
TGTCTAAGCTCCCATTTGGT+AGG + chr3_2:78892507-78892526 None:intergenic 45.0%
AGCTTGTCTAAGCTCCCATT+TGG + chr3_2:78892511-78892530 None:intergenic 45.0%
TTGTGGCCGCATCTATTTAG+TGG + chr3_2:78892698-78892717 None:intergenic 45.0%
TTCACAGCTAAGTACCACCA+TGG + chr3_2:78892845-78892864 None:intergenic 45.0%
!! AGAGTCTCAGCTGATTTGGA+AGG + chr3_2:78892926-78892945 None:intergenic 45.0%
AGAAATTACAGTGAGGCCTG+CGG - chr3_2:78893134-78893153 Msa0428110:CDS 45.0%
CGTGGAATTTCCAGTTACTG+AGG - chr3_2:78893167-78893186 Msa0428110:CDS 45.0%
TATCCAAGGGAACGTTGCAT+TGG - chr3_2:78893257-78893276 Msa0428110:CDS 45.0%
AATCCAATGCAACGTTCCCT+TGG + chr3_2:78893263-78893282 None:intergenic 45.0%
ATGAAGACCAGAGGAATCCT+AGG + chr3_2:78893297-78893316 None:intergenic 45.0%
TATCTCTCAAGTCAGGGCAT+AGG + chr3_2:78893384-78893403 None:intergenic 45.0%
CTAAACTTGGCCAAATCACG+TGG + chr3_2:78893613-78893632 None:intergenic 45.0%
TGCAGAACTGTCTACTCTCA+TGG - chr3_2:78893803-78893822 Msa0428110:CDS 45.0%
GCAGAACTGTCTACTCTCAT+GGG - chr3_2:78893804-78893823 Msa0428110:CDS 45.0%
GGAGCTAAGAGTAATTGGGT+GGG - chr3_2:78893825-78893844 Msa0428110:CDS 45.0%
ATTGGGTGGGACATAAGCTA+TGG - chr3_2:78893838-78893857 Msa0428110:CDS 45.0%
GTGTAGCTTCCTTCTGAACT+TGG + chr3_2:78893877-78893896 None:intergenic 45.0%
AATTGGTGAACCTGGGAAAG+TGG - chr3_2:78893963-78893982 Msa0428110:CDS 45.0%
! TTGAAGGCTTGGTCTTCAAG+CGG + chr3_2:78894035-78894054 None:intergenic 45.0%
AACAGGCTGGGCTATGTAAC+TGG - chr3_2:78891045-78891064 Msa0428110:three_prime_UTR 50.0%
GGGCTATGTAACTGGCTAGT+AGG - chr3_2:78891053-78891072 Msa0428110:three_prime_UTR 50.0%
TGACTCTCTACCAAACACGG+CGG + chr3_2:78891080-78891099 None:intergenic 50.0%
GGCTCAACAGGCCATTAAGT+GGG + chr3_2:78891131-78891150 None:intergenic 50.0%
GATTGGAATCTGGGCTCAAC+AGG + chr3_2:78891143-78891162 None:intergenic 50.0%
GTTGAGCCCAGATTCCAATC+TGG - chr3_2:78891143-78891162 Msa0428110:three_prime_UTR 50.0%
GTCTGTGCCAGATTGGAATC+TGG + chr3_2:78891153-78891172 None:intergenic 50.0%
GATTCCAATCTGGCACAGAC+TGG - chr3_2:78891153-78891172 Msa0428110:three_prime_UTR 50.0%
! GATAGAGGGGTTGTTTCGTG+GGG + chr3_2:78891213-78891232 None:intergenic 50.0%
! GGATAGAGGGGTTGTTTCGT+GGG + chr3_2:78891214-78891233 None:intergenic 50.0%
! AGGATAGAGGGGTTGTTTCG+TGG + chr3_2:78891215-78891234 None:intergenic 50.0%
! GTGATGGGGATAGGATAGAG+GGG + chr3_2:78891226-78891245 None:intergenic 50.0%
! GTGTGATGGGGATAGGATAG+AGG + chr3_2:78891228-78891247 None:intergenic 50.0%
! TGGTGTAGTGTGATGGGGAT+AGG + chr3_2:78891235-78891254 None:intergenic 50.0%
GAGAGTGGTGTAGTGTGATG+GGG + chr3_2:78891240-78891259 None:intergenic 50.0%
GGAGAGTGGTGTAGTGTGAT+GGG + chr3_2:78891241-78891260 None:intergenic 50.0%
TGGAGAGTGGTGTAGTGTGA+TGG + chr3_2:78891242-78891261 None:intergenic 50.0%
!!! TTTTTCTCGGGCTCTGGGTT+GGG + chr3_2:78891478-78891497 None:intergenic 50.0%
AAACAACACTGCTGAGACCG+AGG - chr3_2:78891507-78891526 Msa0428110:CDS 50.0%
! ACTGGGCTTTGATACCTCCT+CGG + chr3_2:78891527-78891546 None:intergenic 50.0%
! TCCAGAGTCTGGTTCGTTCA+AGG - chr3_2:78891561-78891580 Msa0428110:intron 50.0%
TCCTTGAACGAACCAGACTC+TGG + chr3_2:78891565-78891584 None:intergenic 50.0%
ACTGGGCTTGGAGTAGTTGA+AGG + chr3_2:78891694-78891713 None:intergenic 50.0%
TCTGCTTCTGCTTCTGGTGT+GGG + chr3_2:78891736-78891755 None:intergenic 50.0%
TTCTGCTTCTGCTTCTGGTG+TGG + chr3_2:78891737-78891756 None:intergenic 50.0%
! TTGTTGGTCTCTTCAGCAGG+TGG + chr3_2:78891766-78891785 None:intergenic 50.0%
AGTTCCAGAGGAACCAAAGG+TGG - chr3_2:78892014-78892033 Msa0428110:intron 50.0%
GAAGAAGCTTCCACCACCTT+TGG + chr3_2:78892030-78892049 None:intergenic 50.0%
GGGAGCTAAGAGTAATTGGG+TGG - chr3_2:78893824-78893843 Msa0428110:CDS 50.0%
ATGGTGAGAACCACTTTCCC+AGG + chr3_2:78893976-78893995 None:intergenic 50.0%
GACTCTCTACCAAACACGGC+GGG + chr3_2:78891079-78891098 None:intergenic 55.0%
! ACACCGTTATTTCCGGGCCA+TGG - chr3_2:78891104-78891123 Msa0428110:three_prime_UTR 55.0%
GGTCCATGGCCCGGAAATAA+CGG + chr3_2:78891110-78891129 None:intergenic 55.0%
CATTAAGTGGGTCCATGGCC+CGG + chr3_2:78891119-78891138 None:intergenic 55.0%
CAGGCCATTAAGTGGGTCCA+TGG + chr3_2:78891124-78891143 None:intergenic 55.0%
GGGCTCAACAGGCCATTAAG+TGG + chr3_2:78891132-78891151 None:intergenic 55.0%
AGGACCAGTCTGTGCCAGAT+TGG + chr3_2:78891160-78891179 None:intergenic 55.0%
AAAGAGTGGGGCGGATGAGA+AGG + chr3_2:78891180-78891199 None:intergenic 55.0%
! AGGCACTGCCTCTTGAGTTG+TGG + chr3_2:78891374-78891393 None:intergenic 55.0%
ACTTGCTCCTCCTCAGCAAC+AGG + chr3_2:78891394-78891413 None:intergenic 55.0%
TGTTGCTGAGGAGGAGCAAG+TGG - chr3_2:78891393-78891412 Msa0428110:CDS 55.0%
!!! CTTTTTCTCGGGCTCTGGGT+TGG + chr3_2:78891479-78891498 None:intergenic 55.0%
!! GAGGAGGTATCAAAGCCCAG+TGG - chr3_2:78891526-78891545 Msa0428110:CDS 55.0%
GGGCTTGGAGTAGTTGAAGG+TGG + chr3_2:78891691-78891710 None:intergenic 55.0%
TTCTGCTTCTGGTGTGGGCT+CGG + chr3_2:78891731-78891750 None:intergenic 55.0%
TCCAGAGGAACCAAAGGTGG+TGG - chr3_2:78892017-78892036 Msa0428110:intron 55.0%
! TCCACCACCTTTGGTTCCTC+TGG + chr3_2:78892021-78892040 None:intergenic 55.0%
!! GGTGGTGGAAGCTTCTTCAC+CGG - chr3_2:78892032-78892051 Msa0428110:intron 55.0%
AGCTCCCATTTGGTAGGTCC+AGG + chr3_2:78892501-78892520 None:intergenic 55.0%
CGGGCCATGGACCCACTTAA+TGG - chr3_2:78891117-78891136 Msa0428110:three_prime_UTR 60.0%
AGAGGCAGTGCCTGTTGCTG+AGG - chr3_2:78891381-78891400 Msa0428110:CDS 60.0%
TGCTGAGGAGGAGCAAGTGG+TGG - chr3_2:78891396-78891415 Msa0428110:CDS 60.0%
!! CGGGCTTTTTCTCGGGCTCT+GGG + chr3_2:78891483-78891502 None:intergenic 60.0%
!! ACGGGCTTTTTCTCGGGCTC+TGG + chr3_2:78891484-78891503 None:intergenic 60.0%
CAACACTGCTGAGACCGAGG+AGG - chr3_2:78891510-78891529 Msa0428110:CDS 60.0%
TCTGCTTCTGGTGTGGGCTC+GGG + chr3_2:78891730-78891749 None:intergenic 60.0%
! TCCACGGTGTGTTTTGCCGC+AGG + chr3_2:78893153-78893172 None:intergenic 60.0%
GCTAGTAGGCCCGCCGTGTT+TGG - chr3_2:78891067-78891086 Msa0428110:three_prime_UTR 65.0%
GGCAGTGCCTGTTGCTGAGG+AGG - chr3_2:78891384-78891403 Msa0428110:CDS 65.0%
!! TCGGGCTCTGGGTTGGGCTT+GGG + chr3_2:78891472-78891491 None:intergenic 65.0%
GCCTGCGGCAAAACACACCG+TGG - chr3_2:78893149-78893168 Msa0428110:CDS 65.0%
!! CTCGGGCTCTGGGTTGGGCT+TGG + chr3_2:78891473-78891492 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78891010 78894367 78891010 ID=Msa0428110;Name=Msa0428110
chr3_2 mRNA 78891010 78894367 78891010 ID=Msa0428110-mRNA-1;Parent=Msa0428110;Name=Msa0428110-mRNA-1;_AED=0.02;_eAED=0.02;_QI=336|1|1|1|1|1|4|302|586
chr3_2 exon 78891010 78891569 78891010 ID=Msa0428110-mRNA-1:exon:21103;Parent=Msa0428110-mRNA-1
chr3_2 exon 78892189 78892324 78892189 ID=Msa0428110-mRNA-1:exon:21102;Parent=Msa0428110-mRNA-1
chr3_2 exon 78892426 78892550 78892426 ID=Msa0428110-mRNA-1:exon:21101;Parent=Msa0428110-mRNA-1
chr3_2 exon 78892790 78894367 78892790 ID=Msa0428110-mRNA-1:exon:21100;Parent=Msa0428110-mRNA-1
chr3_2 five_prime_UTR 78894032 78894367 78894032 ID=Msa0428110-mRNA-1:five_prime_utr;Parent=Msa0428110-mRNA-1
chr3_2 CDS 78892790 78894031 78892790 ID=Msa0428110-mRNA-1:cds;Parent=Msa0428110-mRNA-1
chr3_2 CDS 78892426 78892550 78892426 ID=Msa0428110-mRNA-1:cds;Parent=Msa0428110-mRNA-1
chr3_2 CDS 78892189 78892324 78892189 ID=Msa0428110-mRNA-1:cds;Parent=Msa0428110-mRNA-1
chr3_2 CDS 78891312 78891569 78891312 ID=Msa0428110-mRNA-1:cds;Parent=Msa0428110-mRNA-1
chr3_2 three_prime_UTR 78891010 78891311 78891010 ID=Msa0428110-mRNA-1:three_prime_utr;Parent=Msa0428110-mRNA-1
Gene Sequence

>Msa0428110

ATGGCTGAGGAATCTCCAAAGATAGCCACAACTCAAGAGGCAGTGCCTGTTGCTGAGGAGGAGCAAGTGGTGGTCACTCAAAAAACAGAATCCACTGTTCCAGCTGACAAAGAATCTGATGAGCCCAAGCCCAACCCAGAGCCCGAGAAAAAGCCCGTTGAAAACAACACTGCTGAGACCGAGGAGGTATCAAAGCCCAGTGGTGATGAAAAAATTCCAGAGTCTGGTTCGTTCAAGGAAGAGAGCACTATTGTTGGTGAGCTACCTGAAGCTGAGAAGAAAGCACTTACAGAGCTGAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTGCACCACCTTCAACTACTCCAAGCCCAGTTAAAGAACAAAAGCCCGAGCCCACACCAGAAGCAGAAGCAGAATCACAACCACCTGCTGAAGAGACCAACAAGAAAGATGAACAGAACAATGAACAGGTTTCTGAAACAGAATCTGTTGTTGCTGTTACTACTGATGAAGTATCAACACCACCACTACCAACAACAACAACTGAAGCTGAACAACAACCAAAAGAAGAAGCAGAAAAGAAAGAAACAGAGGTTGCTGCTTCTTCTGTAGATGAAGATGGAGCAAAAACAGTTGAAGCAATTGAAGAATCTGTTGTAGCTGTAGCTTCATCAGTTCCAGAGGAACCAAAGGTGGTGGAAGCTTCTTCACCGGAACAACAACAACAACAACCAGAAGAGGTTTCAATATGGGGGATACCACTTCTTGCAGACGATAGAACTGACGTGATTCTGTTAAAGTTTCTACGTGCCAGAGACTTCAAAGTGAAAGAAGCATTCACAATGATCAAGAACACTATCCGTTGGAGAAAAGAGTTCAAAATTGAAGAGTTATTATTGGATGAAAACTTAGGTGATGAATATTTAGAGAAAACTGTTTACATGCATGGATATGACAAAGAAGGACACCCTGTTTGTTATAACATTTATGGAGAGTTTGATAACAAGGAGGTTTATAAGAAAACATTTTCTGATGAAGAGAAGAGAGAAAAGTTCTTGAAATGGAGAATTCTGGTCTTGGAGAAGAGTATTAGGAAGTTGGATTTTACCCCTGGTGGTATTTGCACTATTGTTCAAGTTAATGATCTTAAGAATTCTCCTGGACCTACCAAATGGGAGCTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAAGATAATTATCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCTGTGAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTTGTATTTGCTGGACCTTCCAAATCAGCTGAGACTCTTCTAAGTTACATAGCTCCTGAGCAACTTTCAGTCAAATATGGTGGACTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACACACCGTGGAATTTCCAGTTACTGAGAACTGTCTACTCTCATGGGAGCTAAGAGTAATTGGGTGGGACATAAGCTATGGTGCAGAGTTTGTACCAAGTTCAGAAGGAAGCTACACTGTGATAATCCAGAAGACTAGAAAAATTGCTTCATCAGAAGAACCAGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATTCAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCAACTTCTGATTAA
Protein sequence

>Msa0428110

MAEESPKIATTQEAVPVAEEEQVVVTQKTESTVPADKESDEPKPNPEPEKKPVENNTAETEEVSKPSGDEKIPESGSFKEESTIVGELPEAEKKALTELKQLIQEALNKHEFSAPPSTTPSPVKEQKPEPTPEAEAESQPPAEETNKKDEQNNEQVSETESVVAVTTDEVSTPPLPTTTTEAEQQPKEEAEKKETEVAASSVDEDGAKTVEAIEESVVAVASSVPEEPKVVEASSPEQQQQQPEEVSIWGIPLLADDRTDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFKIEELLLDENLGDEYLEKTVYMHGYDKEGHPVCYNIYGEFDNKEVYKKTFSDEEKREKFLKWRILVLEKSIRKLDFTPGGICTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLSYIAPEQLSVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWDISYGAEFVPSSEGSYTVIIQKTRKIASSEEPVLCNNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPSTSD*