Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466140 | ABK95901.1 | 93.478 | 184 | 12 | 0 | 1 | 184 | 1 | 184 | 1.53e-121 | 351 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466140 | sp|Q9SJ22|CESA9_ARATH | 91.160 | 181 | 16 | 0 | 3 | 183 | 906 | 1086 | 1.66e-111 | 345 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466140 | A9PHP8 | 93.478 | 184 | 12 | 0 | 1 | 184 | 1 | 184 | 7.32e-122 | 351 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0071370 | Msa1466140 | 0.801400 | 9.166741e-49 | -8.615850e-47 |
| Msa0619010 | Msa1466140 | 0.881635 | 2.037558e-70 | -8.615850e-47 |
| Msa0659080 | Msa1466140 | 0.808783 | 2.613830e-50 | -8.615850e-47 |
| Msa0705570 | Msa1466140 | 0.885740 | 6.267580e-72 | -8.615850e-47 |
| Msa0146990 | Msa1466140 | 0.824296 | 8.718152e-54 | -8.615850e-47 |
| Msa1332540 | Msa1466140 | 0.801010 | 1.101790e-48 | -8.615850e-47 |
| Msa0374190 | Msa1466140 | 0.814841 | 1.254532e-51 | -8.615850e-47 |
| Msa0377320 | Msa1466140 | 0.804463 | 2.134384e-49 | -8.615850e-47 |
| Msa0382630 | Msa1466140 | 0.802400 | 5.712085e-49 | -8.615850e-47 |
| Msa0423460 | Msa1466140 | 0.825448 | 4.661784e-54 | -8.615850e-47 |
| Msa0428110 | Msa1466140 | 0.808347 | 3.238352e-50 | -8.615850e-47 |
| Msa0469610 | Msa1466140 | 0.848524 | 5.802745e-60 | -8.615850e-47 |
| Msa0480420 | Msa1466140 | 0.805013 | 1.638142e-49 | -8.615850e-47 |
| Msa0518750 | Msa1466140 | 0.802585 | 5.231596e-49 | -8.615850e-47 |
| Msa0524840 | Msa1466140 | 0.807709 | 4.428300e-50 | -8.615850e-47 |
| Msa0524950 | Msa1466140 | 0.816114 | 6.533141e-52 | -8.615850e-47 |
| Msa0568760 | Msa1466140 | 0.852651 | 4.013602e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466140 | MtrunA17_Chr8g0383701 | 99.462 | 186 | 1 | 0 | 1 | 186 | 913 | 1098 | 1.04e-124 | 377 |
| Msa1466140 | MtrunA17_Chr1g0201731 | 84.239 | 184 | 29 | 0 | 1 | 184 | 914 | 1097 | 5.20e-99 | 308 |
| Msa1466140 | MtrunA17_Chr2g0296991 | 73.913 | 184 | 47 | 1 | 1 | 183 | 861 | 1044 | 4.95e-94 | 294 |
| Msa1466140 | MtrunA17_Chr3g0088821 | 74.054 | 185 | 46 | 2 | 1 | 183 | 894 | 1078 | 1.20e-93 | 294 |
| Msa1466140 | MtrunA17_Chr8g0352231 | 74.054 | 185 | 46 | 2 | 1 | 183 | 894 | 1078 | 1.46e-92 | 291 |
| Msa1466140 | MtrunA17_Chr4g0073711 | 71.739 | 184 | 51 | 1 | 1 | 183 | 855 | 1038 | 1.56e-92 | 290 |
| Msa1466140 | MtrunA17_Chr3g0137951 | 71.196 | 184 | 50 | 2 | 3 | 183 | 904 | 1087 | 3.94e-87 | 276 |
| Msa1466140 | MtrunA17_Chr2g0284211 | 68.421 | 171 | 54 | 0 | 1 | 171 | 794 | 964 | 6.02e-83 | 264 |
| Msa1466140 | MtrunA17_Chr8g0379241 | 62.903 | 186 | 66 | 2 | 1 | 183 | 806 | 991 | 1.96e-82 | 262 |
| Msa1466140 | MtrunA17_Chr7g0267731 | 65.574 | 183 | 61 | 2 | 3 | 183 | 804 | 986 | 4.01e-80 | 256 |
| Msa1466140 | MtrunA17_Chr1g0183381 | 60.870 | 184 | 70 | 2 | 1 | 183 | 722 | 904 | 1.76e-76 | 245 |
| Msa1466140 | MtrunA17_Chr3g0078671 | 59.043 | 188 | 72 | 2 | 1 | 183 | 862 | 1049 | 8.17e-74 | 239 |
| Msa1466140 | MtrunA17_Chr8g0364641 | 55.914 | 186 | 79 | 3 | 1 | 183 | 796 | 981 | 1.16e-70 | 230 |
| Msa1466140 | MtrunA17_Chr4g0039801 | 48.000 | 175 | 88 | 1 | 1 | 172 | 959 | 1133 | 1.13e-55 | 189 |
| Msa1466140 | MtrunA17_Chr5g0410641 | 49.375 | 160 | 78 | 1 | 11 | 167 | 948 | 1107 | 4.85e-54 | 184 |
| Msa1466140 | MtrunA17_Chr7g0269741 | 48.538 | 171 | 84 | 2 | 1 | 167 | 986 | 1156 | 7.56e-54 | 184 |
| Msa1466140 | MtrunA17_Chr1g0165411 | 45.455 | 176 | 93 | 1 | 1 | 173 | 920 | 1095 | 6.63e-52 | 178 |
| Msa1466140 | MtrunA17_Chr0c03g0490021 | 66.393 | 122 | 40 | 1 | 15 | 135 | 1 | 122 | 8.50e-52 | 162 |
| Msa1466140 | MtrunA17_Chr2g0297351 | 47.590 | 166 | 84 | 1 | 5 | 167 | 845 | 1010 | 2.60e-50 | 173 |
| Msa1466140 | MtrunA17_Chr1g0165421 | 45.833 | 168 | 88 | 1 | 3 | 167 | 950 | 1117 | 1.40e-49 | 171 |
| Msa1466140 | MtrunA17_Chr7g0252781 | 61.176 | 85 | 31 | 1 | 101 | 183 | 5 | 89 | 7.25e-31 | 107 |
| Msa1466140 | MtrunA17_Chr8g0355061 | 77.778 | 54 | 12 | 0 | 15 | 68 | 1 | 54 | 1.21e-25 | 93.6 |
| Msa1466140 | MtrunA17_Chr7g0274751 | 35.443 | 158 | 45 | 3 | 19 | 173 | 701 | 804 | 4.94e-22 | 92.8 |
| Msa1466140 | MtrunA17_Chr2g0322331 | 27.607 | 163 | 107 | 4 | 2 | 155 | 208 | 368 | 1.24e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466140 | AT2G21770.1 | 91.160 | 181 | 16 | 0 | 3 | 183 | 906 | 1086 | 1.69e-112 | 345 |
| Msa1466140 | AT5G64740.1 | 89.617 | 183 | 19 | 0 | 1 | 183 | 901 | 1083 | 5.61e-112 | 343 |
| Msa1466140 | AT5G09870.1 | 87.978 | 183 | 22 | 0 | 1 | 183 | 886 | 1068 | 1.13e-110 | 339 |
| Msa1466140 | AT4G39350.1 | 89.071 | 183 | 20 | 0 | 1 | 183 | 900 | 1082 | 6.70e-104 | 322 |
| Msa1466140 | AT5G05170.1 | 74.054 | 185 | 46 | 2 | 1 | 183 | 881 | 1065 | 3.80e-93 | 293 |
| Msa1466140 | AT5G17420.1 | 70.109 | 184 | 54 | 1 | 1 | 183 | 843 | 1026 | 1.85e-90 | 285 |
| Msa1466140 | AT5G44030.3 | 70.430 | 186 | 52 | 2 | 1 | 183 | 585 | 770 | 1.50e-89 | 278 |
| Msa1466140 | AT5G44030.1 | 70.430 | 186 | 52 | 2 | 1 | 183 | 864 | 1049 | 8.93e-88 | 278 |
| Msa1466140 | AT5G44030.2 | 70.430 | 186 | 52 | 2 | 1 | 183 | 893 | 1078 | 9.30e-88 | 278 |
| Msa1466140 | AT4G32410.1 | 76.190 | 168 | 39 | 1 | 3 | 169 | 898 | 1065 | 1.19e-87 | 278 |
| Msa1466140 | AT2G25540.1 | 71.839 | 174 | 48 | 1 | 1 | 173 | 876 | 1049 | 5.04e-84 | 268 |
| Msa1466140 | AT4G18780.1 | 69.591 | 171 | 52 | 0 | 1 | 171 | 800 | 970 | 1.14e-83 | 266 |
| Msa1466140 | AT1G02730.1 | 49.123 | 171 | 83 | 2 | 1 | 167 | 998 | 1168 | 2.29e-54 | 186 |
| Msa1466140 | AT3G03050.1 | 50.000 | 166 | 80 | 1 | 5 | 167 | 966 | 1131 | 7.67e-54 | 184 |
| Msa1466140 | AT5G16910.1 | 50.602 | 166 | 79 | 1 | 5 | 167 | 966 | 1131 | 7.97e-54 | 184 |
| Msa1466140 | AT2G33100.2 | 46.471 | 170 | 88 | 1 | 1 | 167 | 855 | 1024 | 1.96e-52 | 180 |
| Msa1466140 | AT2G33100.1 | 46.471 | 170 | 88 | 1 | 1 | 167 | 855 | 1024 | 1.96e-52 | 180 |
| Msa1466140 | AT1G32180.1 | 46.707 | 167 | 84 | 1 | 5 | 166 | 801 | 967 | 1.36e-51 | 177 |
| Msa1466140 | AT1G32180.2 | 46.707 | 167 | 84 | 1 | 5 | 166 | 801 | 967 | 1.36e-51 | 177 |
| Msa1466140 | AT4G38190.1 | 45.882 | 170 | 87 | 3 | 3 | 167 | 923 | 1092 | 3.27e-49 | 171 |
Find 58 sgRNAs with CRISPR-Local
Find 66 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGTTTGCTTGGGAAAC+AGG | 0.292557 | tig0046052:-2208 | Msa1466140:CDS |
| TAGATTATTCTTTGCCCTTT+GGG | 0.328780 | tig0046052:-2256 | Msa1466140:CDS |
| GTAGATTATTCTTTGCCCTT+TGG | 0.329014 | tig0046052:-2257 | Msa1466140:CDS |
| TAGGATGCCAACCATTGTTT+TGG | 0.332128 | tig0046052:-2184 | Msa1466140:CDS |
| TTCATGATTAATAGCGTCAT+TGG | 0.364253 | tig0046052:+2351 | Msa1466140:intergenic |
| TTCCATCTTGACTCTCTTGT+GGG | 0.368361 | tig0046052:-2142 | Msa1466140:CDS |
| GTCTCCGATGCGATCAATAA+TGG | 0.388015 | tig0046052:-2306 | Msa1466140:CDS |
| GGTGGAGGAATGAACAGTTT+TGG | 0.392061 | tig0046052:-2533 | Msa1466140:CDS |
| CCATTCCTCAAGGGTTTGCT+TGG | 0.392737 | tig0046052:-2216 | Msa1466140:CDS |
| GGTCCTGTCTTAGAAATTTG+TGG | 0.442478 | tig0046052:-2090 | Msa1466140:CDS |
| TTCATATCCATCGCAGCAAC+CGG | 0.452409 | tig0046052:-2597 | Msa1466140:CDS |
| CTTCCATCTTGACTCTCTTG+TGG | 0.452869 | tig0046052:-2143 | Msa1466140:CDS |
| GGACCATCTCTTGATACAAA+AGG | 0.456931 | tig0046052:+2108 | Msa1466140:intergenic |
| GACTCATGGGGACCTCTGTT+CGG | 0.457318 | tig0046052:-2279 | Msa1466140:CDS |
| AGCCGACGATGGAGAATTCT+CGG | 0.462265 | tig0046052:-2412 | Msa1466140:CDS |
| CATTCCTCAAGGGTTTGCTT+GGG | 0.462332 | tig0046052:-2215 | Msa1466140:CDS |
| CCTTGAGCAAACCTTGGAAA+AGG | 0.462786 | tig0046052:+2478 | Msa1466140:intergenic |
| CGGTATCCTTGAGATGCAAT+GGG | 0.463735 | tig0046052:-2577 | Msa1466140:CDS |
| TCAATAATGGTTATGACTCA+TGG | 0.469642 | tig0046052:-2293 | Msa1466140:CDS |
| CTATTAATCATGAATATTGT+GGG | 0.471704 | tig0046052:-2342 | Msa1466140:CDS |
| AAGGATACCGGTTGCTGCGA+TGG | 0.480309 | tig0046052:+2590 | Msa1466140:intergenic |
| CGGAGCTCTACGTATTCAAA+TGG | 0.486111 | tig0046052:-2392 | Msa1466140:CDS |
| CCAAGCAAACCCTTGAGGAA+TGG | 0.489223 | tig0046052:+2216 | Msa1466140:intergenic |
| AATATTGTGGGCGTGATTGT+TGG | 0.489852 | tig0046052:-2330 | Msa1466140:CDS |
| AATCCACAAATTTCTAAGAC+AGG | 0.496939 | tig0046052:+2087 | Msa1466140:intergenic |
| CAATAATGGTTATGACTCAT+GGG | 0.497429 | tig0046052:-2292 | Msa1466140:CDS |
| CCGGTATCCTTGAGATGCAA+TGG | 0.505381 | tig0046052:-2578 | Msa1466140:CDS |
| GCTATTAATCATGAATATTG+TGG | 0.515248 | tig0046052:-2343 | Msa1466140:CDS |
| CTTGAGCAAACCTTGGAAAA+GGG | 0.523859 | tig0046052:+2479 | Msa1466140:intergenic |
| GACCATCTCTTGATACAAAA+GGG | 0.524535 | tig0046052:+2109 | Msa1466140:intergenic |
| GACCAAACCAAAACAATGGT+TGG | 0.534995 | tig0046052:+2177 | Msa1466140:intergenic |
| CTAAAACCTTGAGCAAACCT+TGG | 0.535272 | tig0046052:+2472 | Msa1466140:intergenic |
| GTTTGCTTGGGAAACAGGAT+AGG | 0.535771 | tig0046052:-2203 | Msa1466140:CDS |
| AACCCACAAGAGAGTCAAGA+TGG | 0.539781 | tig0046052:+2140 | Msa1466140:intergenic |
| ACATCTTTATCCATTCCTCA+AGG | 0.543282 | tig0046052:-2226 | Msa1466140:CDS |
| GTGGTGTTGGAATAGATGAT+TGG | 0.544543 | tig0046052:-2554 | Msa1466140:CDS |
| GTGTTGGAATAGATGATTGG+TGG | 0.553168 | tig0046052:-2551 | Msa1466140:CDS |
| ATGATTAATAGCGTCATTGG+AGG | 0.556639 | tig0046052:+2354 | Msa1466140:intergenic |
| CCATTGCATCTCAAGGATAC+CGG | 0.562719 | tig0046052:+2578 | Msa1466140:intergenic |
| CATCTTTATCCATTCCTCAA+GGG | 0.565197 | tig0046052:-2225 | Msa1466140:CDS |
| GAGATGCAATGGGGTGGTGT+TGG | 0.571822 | tig0046052:-2567 | Msa1466140:CDS |
| CACCACCCCATTGCATCTCA+AGG | 0.580716 | tig0046052:+2571 | Msa1466140:intergenic |
| AAGATGTATGATAACCCAAA+GGG | 0.587645 | tig0046052:+2242 | Msa1466140:intergenic |
| TGATTAATAGCGTCATTGGA+GGG | 0.597684 | tig0046052:+2355 | Msa1466140:intergenic |
| AAAGATGTATGATAACCCAA+AGG | 0.604227 | tig0046052:+2241 | Msa1466140:intergenic |
| TTGGAATAGATGATTGGTGG+AGG | 0.607703 | tig0046052:-2548 | Msa1466140:CDS |
| CTCCGAGAATTCTCCATCGT+CGG | 0.612639 | tig0046052:+2410 | Msa1466140:intergenic |
| TTGCTGCGATGGATATGAAG+AGG | 0.618185 | tig0046052:+2601 | Msa1466140:intergenic |
| ATAACCATTATTGATCGCAT+CGG | 0.620303 | tig0046052:+2302 | Msa1466140:intergenic |
| GTTTCCCAAGCAAACCCTTG+AGG | 0.630234 | tig0046052:+2211 | Msa1466140:intergenic |
| TGCTGCGATGGATATGAAGA+GGG | 0.635078 | tig0046052:+2602 | Msa1466140:intergenic |
| ACATCAAAAGCAGCCGACGA+TGG | 0.641221 | tig0046052:-2423 | Msa1466140:CDS |
| AAGAATAATCTACCGAACAG+AGG | 0.650500 | tig0046052:+2267 | Msa1466140:intergenic |
| GATTGACCAAACCAAAACAA+TGG | 0.654450 | tig0046052:+2173 | Msa1466140:intergenic |
| ATCCTTGAGATGCAATGGGG+TGG | 0.682503 | tig0046052:-2573 | Msa1466140:CDS |
| AATAATGGTTATGACTCATG+GGG | 0.693873 | tig0046052:-2291 | Msa1466140:CDS |
| AATTTGTGGATTGAATTGTG+AGG | 0.730949 | tig0046052:-2076 | Msa1466140:CDS |
| GGTATCCTTGAGATGCAATG+GGG | 0.741858 | tig0046052:-2576 | Msa1466140:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTAATCATGAATATTGT+GGG | - | tig0046052:2332-2351 | Msa1466140:CDS | 20.0% |
| ! | GCTATTAATCATGAATATTG+TGG | - | tig0046052:2331-2350 | Msa1466140:CDS | 25.0% |
| TTCATGATTAATAGCGTCAT+TGG | + | tig0046052:2326-2345 | Msa1466140:intergenic | 30.0% | |
| ATAACCATTATTGATCGCAT+CGG | + | tig0046052:2375-2394 | Msa1466140:intergenic | 30.0% | |
| TCAATAATGGTTATGACTCA+TGG | - | tig0046052:2381-2400 | Msa1466140:CDS | 30.0% | |
| CAATAATGGTTATGACTCAT+GGG | - | tig0046052:2382-2401 | Msa1466140:CDS | 30.0% | |
| AATAATGGTTATGACTCATG+GGG | - | tig0046052:2383-2402 | Msa1466140:CDS | 30.0% | |
| TAGATTATTCTTTGCCCTTT+GGG | - | tig0046052:2418-2437 | Msa1466140:CDS | 30.0% | |
| AAGATGTATGATAACCCAAA+GGG | + | tig0046052:2435-2454 | Msa1466140:intergenic | 30.0% | |
| AAAGATGTATGATAACCCAA+AGG | + | tig0046052:2436-2455 | Msa1466140:intergenic | 30.0% | |
| !! | AATCCACAAATTTCTAAGAC+AGG | + | tig0046052:2590-2609 | Msa1466140:intergenic | 30.0% |
| ! | AATTTGTGGATTGAATTGTG+AGG | - | tig0046052:2598-2617 | Msa1466140:CDS | 30.0% |
| !!! | AATGAACAGTTTTGGGTGAT+TGG | - | tig0046052:2149-2168 | Msa1466140:CDS | 35.0% |
| !!! | CATTTTTTTGCCCTTTTCCA+AGG | - | tig0046052:2185-2204 | Msa1466140:CDS | 35.0% |
| TGATTAATAGCGTCATTGGA+GGG | + | tig0046052:2322-2341 | Msa1466140:intergenic | 35.0% | |
| ATGATTAATAGCGTCATTGG+AGG | + | tig0046052:2323-2342 | Msa1466140:intergenic | 35.0% | |
| AAGAATAATCTACCGAACAG+AGG | + | tig0046052:2410-2429 | Msa1466140:intergenic | 35.0% | |
| GTAGATTATTCTTTGCCCTT+TGG | - | tig0046052:2417-2436 | Msa1466140:CDS | 35.0% | |
| ACATCTTTATCCATTCCTCA+AGG | - | tig0046052:2448-2467 | Msa1466140:CDS | 35.0% | |
| CATCTTTATCCATTCCTCAA+GGG | - | tig0046052:2449-2468 | Msa1466140:CDS | 35.0% | |
| GATTGACCAAACCAAAACAA+TGG | + | tig0046052:2504-2523 | Msa1466140:intergenic | 35.0% | |
| ! | AACCCTTTTGTATCAAGAGA+TGG | - | tig0046052:2563-2582 | Msa1466140:CDS | 35.0% |
| GACCATCTCTTGATACAAAA+GGG | + | tig0046052:2568-2587 | Msa1466140:intergenic | 35.0% | |
| ! | GTGGTGTTGGAATAGATGAT+TGG | - | tig0046052:2120-2139 | Msa1466140:CDS | 40.0% |
| GTGTTGGAATAGATGATTGG+TGG | - | tig0046052:2123-2142 | Msa1466140:CDS | 40.0% | |
| TTGGAATAGATGATTGGTGG+AGG | - | tig0046052:2126-2145 | Msa1466140:CDS | 40.0% | |
| ! | GTGGAGGAATGAACAGTTTT+GGG | - | tig0046052:2142-2161 | Msa1466140:CDS | 40.0% |
| CTTGAGCAAACCTTGGAAAA+GGG | + | tig0046052:2198-2217 | Msa1466140:intergenic | 40.0% | |
| CTAAAACCTTGAGCAAACCT+TGG | + | tig0046052:2205-2224 | Msa1466140:intergenic | 40.0% | |
| AATATTGTGGGCGTGATTGT+TGG | - | tig0046052:2344-2363 | Msa1466140:CDS | 40.0% | |
| ! | TAGGATGCCAACCATTGTTT+TGG | - | tig0046052:2490-2509 | Msa1466140:CDS | 40.0% |
| !!! | TGCCAACCATTGTTTTGGTT+TGG | - | tig0046052:2495-2514 | Msa1466140:CDS | 40.0% |
| GACCAAACCAAAACAATGGT+TGG | + | tig0046052:2500-2519 | Msa1466140:intergenic | 40.0% | |
| TTCCATCTTGACTCTCTTGT+GGG | - | tig0046052:2532-2551 | Msa1466140:CDS | 40.0% | |
| GGACCATCTCTTGATACAAA+AGG | + | tig0046052:2569-2588 | Msa1466140:intergenic | 40.0% | |
| GGTCCTGTCTTAGAAATTTG+TGG | - | tig0046052:2584-2603 | Msa1466140:CDS | 40.0% | |
| TGCTGCGATGGATATGAAGA+GGG | + | tig0046052:2075-2094 | None:intergenic | 45.0% | |
| TTGCTGCGATGGATATGAAG+AGG | + | tig0046052:2076-2095 | None:intergenic | 45.0% | |
| TTCATATCCATCGCAGCAAC+CGG | - | tig0046052:2077-2096 | Msa1466140:CDS | 45.0% | |
| CCATTGCATCTCAAGGATAC+CGG | + | tig0046052:2099-2118 | Msa1466140:intergenic | 45.0% | |
| CGGTATCCTTGAGATGCAAT+GGG | - | tig0046052:2097-2116 | Msa1466140:CDS | 45.0% | |
| GGTATCCTTGAGATGCAATG+GGG | - | tig0046052:2098-2117 | Msa1466140:CDS | 45.0% | |
| ! | GGTGGAGGAATGAACAGTTT+TGG | - | tig0046052:2141-2160 | Msa1466140:CDS | 45.0% |
| !!! | GAACAGTTTTGGGTGATTGG+AGG | - | tig0046052:2152-2171 | Msa1466140:CDS | 45.0% |
| CCTTGAGCAAACCTTGGAAA+AGG | + | tig0046052:2199-2218 | Msa1466140:intergenic | 45.0% | |
| !! | CCTTTTCCAAGGTTTGCTCA+AGG | - | tig0046052:2196-2215 | Msa1466140:CDS | 45.0% |
| !! | GGTTTGCTCAAGGTTTTAGC+TGG | - | tig0046052:2206-2225 | Msa1466140:CDS | 45.0% |
| CGGAGCTCTACGTATTCAAA+TGG | - | tig0046052:2282-2301 | Msa1466140:CDS | 45.0% | |
| GTCTCCGATGCGATCAATAA+TGG | - | tig0046052:2368-2387 | Msa1466140:CDS | 45.0% | |
| ! | CATTCCTCAAGGGTTTGCTT+GGG | - | tig0046052:2459-2478 | Msa1466140:CDS | 45.0% |
| GTTTGCTTGGGAAACAGGAT+AGG | - | tig0046052:2471-2490 | Msa1466140:CDS | 45.0% | |
| CTTCCATCTTGACTCTCTTG+TGG | - | tig0046052:2531-2550 | Msa1466140:CDS | 45.0% | |
| AACCCACAAGAGAGTCAAGA+TGG | + | tig0046052:2537-2556 | Msa1466140:intergenic | 45.0% | |
| CCGGTATCCTTGAGATGCAA+TGG | - | tig0046052:2096-2115 | Msa1466140:CDS | 50.0% | |
| ATCCTTGAGATGCAATGGGG+TGG | - | tig0046052:2101-2120 | Msa1466140:CDS | 50.0% | |
| ACATCAAAAGCAGCCGACGA+TGG | - | tig0046052:2251-2270 | Msa1466140:CDS | 50.0% | |
| AGCCGACGATGGAGAATTCT+CGG | - | tig0046052:2262-2281 | Msa1466140:CDS | 50.0% | |
| CTCCGAGAATTCTCCATCGT+CGG | + | tig0046052:2267-2286 | Msa1466140:intergenic | 50.0% | |
| CCAAGCAAACCCTTGAGGAA+TGG | + | tig0046052:2461-2480 | Msa1466140:intergenic | 50.0% | |
| ! | CCATTCCTCAAGGGTTTGCT+TGG | - | tig0046052:2458-2477 | Msa1466140:CDS | 50.0% |
| GTTTCCCAAGCAAACCCTTG+AGG | + | tig0046052:2466-2485 | Msa1466140:intergenic | 50.0% | |
| ! | CAAGGGTTTGCTTGGGAAAC+AGG | - | tig0046052:2466-2485 | Msa1466140:CDS | 50.0% |
| ! | AAGGATACCGGTTGCTGCGA+TGG | + | tig0046052:2087-2106 | Msa1466140:intergenic | 55.0% |
| CACCACCCCATTGCATCTCA+AGG | + | tig0046052:2106-2125 | Msa1466140:intergenic | 55.0% | |
| GAGATGCAATGGGGTGGTGT+TGG | - | tig0046052:2107-2126 | Msa1466140:CDS | 55.0% | |
| GACTCATGGGGACCTCTGTT+CGG | - | tig0046052:2395-2414 | Msa1466140:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0046052 | gene | 2068 | 2628 | 2068 | ID=Msa1466140;Name=Msa1466140 |
| tig0046052 | mRNA | 2068 | 2628 | 2068 | ID=Msa1466140-mRNA-1;Parent=Msa1466140;Name=Msa1466140-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|186 |
| tig0046052 | exon | 2068 | 2628 | 2068 | ID=Msa1466140-mRNA-1:exon:25000;Parent=Msa1466140-mRNA-1 |
| tig0046052 | CDS | 2068 | 2628 | 2068 | ID=Msa1466140-mRNA-1:cds;Parent=Msa1466140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
