AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377320 MtrunA17_Chr3g0131071 91.186 590 31 7 1 586 1 573 0.0 1003
Msa0377320 MtrunA17_Chr8g0385291 70.876 491 119 10 112 586 21 503 0.0 668
Msa0377320 MtrunA17_Chr4g0014901 68.475 387 117 4 199 582 208 592 0.0 546
Msa0377320 MtrunA17_Chr4g0014911 63.081 344 120 2 244 582 121 462 1.94e-158 461
Msa0377320 MtrunA17_Chr2g0293201 54.913 346 146 6 245 583 124 466 6.99e-134 399
Msa0377320 MtrunA17_Chr4g0004981 51.045 335 155 6 245 574 107 437 7.14e-114 347
Msa0377320 MtrunA17_Chr1g0183881 41.379 348 191 7 240 581 124 464 4.85e-91 288
Msa0377320 MtrunA17_Chr7g0243541 41.618 346 148 9 247 586 100 397 8.15e-83 265
Msa0377320 MtrunA17_Chr3g0131581 30.476 210 132 4 260 469 67 262 1.10e-22 98.2
Msa0377320 MtrunA17_Chr8g0385681 30.476 210 132 5 260 469 50 245 1.91e-18 85.5
Msa0377320 MtrunA17_Chr8g0385691 30.000 210 133 5 260 469 47 242 2.57e-18 85.1
Msa0377320 MtrunA17_Chr7g0254621 28.112 249 150 9 235 474 16 244 4.05e-13 70.9
Msa0377320 MtrunA17_Chr3g0144911 28.378 222 134 8 262 469 110 320 1.44e-11 66.6
Msa0377320 MtrunA17_Chr5g0399151 27.948 229 140 8 263 477 116 333 1.88e-11 66.6
Msa0377320 MtrunA17_Chr4g0035391 27.477 222 136 8 262 469 107 317 2.00e-11 67.0
Msa0377320 MtrunA17_Chr1g0155521 27.727 220 138 8 262 469 112 322 4.56e-11 65.9
Msa0377320 MtrunA17_Chr8g0372651 27.149 221 138 8 262 469 79 289 8.60e-11 64.7
Msa0377320 MtrunA17_Chr3g0144891 27.027 222 137 8 262 469 97 307 9.74e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377320 AT4G09160.1 64.571 350 117 3 238 582 317 664 1.46e-169 497
Msa0377320 AT4G09160.2 64.571 350 117 3 238 582 292 639 1.48e-169 496
Msa0377320 AT4G09160.3 64.571 350 117 3 238 582 292 639 1.81e-169 496
Msa0377320 AT1G72160.1 54.244 483 193 10 116 582 19 489 5.59e-168 487
Msa0377320 AT1G22530.2 43.570 661 256 14 14 581 12 648 1.32e-150 448
Msa0377320 AT1G72150.1 51.606 498 220 10 90 581 91 573 2.79e-149 442
Msa0377320 AT1G22530.1 54.780 387 157 5 196 581 313 682 4.19e-144 432
Msa0377320 AT1G30690.1 41.455 550 267 16 51 585 30 539 3.40e-123 374
Msa0377320 AT1G30690.2 41.455 550 267 16 51 585 30 539 3.40e-123 374
Msa0377320 AT3G51670.1 46.174 379 193 8 213 585 34 407 6.64e-113 343
Msa0377320 AT1G01630.1 30.000 210 133 5 260 469 50 245 2.19e-19 88.6
Msa0377320 AT4G08690.2 26.721 247 159 7 237 478 17 246 1.77e-14 75.1
Msa0377320 AT4G08690.1 26.721 247 159 7 237 478 17 246 1.77e-14 75.1
Msa0377320 AT4G08690.3 26.721 247 159 7 237 478 17 246 1.77e-14 75.1
Msa0377320 AT3G24840.1 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0377320 AT3G24840.6 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0377320 AT3G24840.4 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0377320 AT3G24840.2 25.574 305 199 10 191 477 27 321 1.21e-12 71.2
Msa0377320 AT3G24840.7 25.574 305 199 10 191 477 27 321 1.32e-12 70.9
Msa0377320 AT3G24840.3 25.574 305 199 10 191 477 27 321 1.32e-12 70.9
Msa0377320 AT3G24840.5 25.574 305 199 10 191 477 27 321 1.32e-12 70.9
Msa0377320 AT4G34580.2 26.606 218 143 6 262 469 88 298 6.92e-12 68.6
Msa0377320 AT4G34580.1 26.606 218 143 6 262 469 88 298 6.92e-12 68.6
Msa0377320 AT1G19650.1 28.829 222 133 7 262 469 104 314 7.37e-12 68.6
Msa0377320 AT2G21540.6 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0377320 AT2G21540.2 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0377320 AT2G21540.1 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0377320 AT2G21540.4 28.511 235 137 11 251 469 86 305 1.17e-11 67.8
Msa0377320 AT2G21540.3 28.571 224 131 10 262 469 95 305 1.32e-11 67.8
Msa0377320 AT2G21540.5 28.571 224 131 10 262 469 95 305 1.32e-11 67.8
Msa0377320 AT4G39170.2 29.148 223 131 9 262 469 108 318 1.88e-11 67.4
Msa0377320 AT2G18180.2 26.957 230 146 9 253 469 71 291 1.94e-11 67.4
Msa0377320 AT4G39170.1 29.148 223 131 9 262 469 108 318 1.98e-11 67.4
Msa0377320 AT4G39180.3 27.273 231 145 8 251 469 87 306 3.02e-11 66.6
Msa0377320 AT4G39180.2 27.273 231 145 8 251 469 87 306 3.02e-11 66.6
Msa0377320 AT2G18180.1 26.957 230 146 9 253 469 71 291 3.04e-11 66.6
Msa0377320 AT4G39180.1 26.866 268 168 10 215 469 54 306 3.10e-11 66.6
Msa0377320 AT1G22180.2 25.896 251 161 6 235 478 18 250 3.27e-11 65.1
Msa0377320 AT1G22180.4 25.896 251 161 6 235 478 18 250 3.27e-11 65.1
Msa0377320 AT1G75170.2 24.889 225 128 6 259 469 43 240 5.19e-11 64.3
Msa0377320 AT1G75170.1 24.889 225 128 6 259 469 43 240 5.19e-11 64.3
Msa0377320 AT1G19650.3 28.829 222 133 7 262 469 104 314 7.06e-11 65.1

Find 168 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCGGGCTCTGGGTTGGGCT+TGG 0.133515 3_1:+77740667 None:intergenic
TCATGGGAGCTAAGAGTAAT+TGG 0.180786 3_1:-77738317 Msa0377320:CDS
CCTGTTTGTTATAACATTTA+TGG 0.191442 3_1:-77739828 Msa0377320:CDS
ACCTGTTTGGCTACAAATTC+AGG 0.192401 3_1:+77739570 None:intergenic
TCAAATAACACCGTTATTTC+CGG 0.205164 3_1:-77741040 Msa0377320:five_prime_UTR
TGTGATTCTGCTTCTGCTTC+TGG 0.205662 3_1:+77740398 None:intergenic
ATTATATGCAGATGACTTAT+TGG 0.206380 3_1:-77737948 Msa0377320:three_prime_UTR
CAAAATTGAAGAGTTATTAT+TGG 0.213965 3_1:-77739919 Msa0377320:CDS
AATAACGATGAAAAGTATTT+TGG 0.229828 3_1:+77740843 None:intergenic
CTAAGCAAAGATGGTGAATT+TGG 0.229951 3_1:-77739044 Msa0377320:CDS
TCTTGAGTTGTGGCTATCTT+TGG 0.230004 3_1:+77740776 None:intergenic
CTTTGCAACAACTACAAAAT+TGG 0.236225 3_1:-77738191 Msa0377320:CDS
TCGGGCTCTGGGTTGGGCTT+GGG 0.258053 3_1:+77740668 None:intergenic
AAAAGCAAGTTTGTATTTGC+TGG 0.284258 3_1:-77739238 Msa0377320:CDS
ACCAAATTCACCTCAGTAAC+TGG 0.284996 3_1:+77738960 None:intergenic
TTCTGCTTCTGGTGTGGGCT+CGG 0.286758 3_1:+77740409 None:intergenic
GTTCTTGAAATGGAGAATTC+TGG 0.287184 3_1:-77739745 Msa0377320:CDS
GTTCTGTTCATCTTTCTTGT+TGG 0.294746 3_1:+77740358 None:intergenic
AGTGCTTTCTTCTCAGCTTC+AGG 0.302927 3_1:+77740527 None:intergenic
CGGGCCATGGACCCACTTAA+TGG 0.315039 3_1:-77741020 Msa0377320:five_prime_UTR
CCCCATATTGAAACCTCTTC+TGG 0.316394 3_1:+77740065 None:intergenic
TGGTCTTGGAGAAGAGTATT+AGG 0.324429 3_1:-77739725 Msa0377320:CDS
AGAGAGAAAAGTTCTTGAAA+TGG 0.327651 3_1:-77739755 Msa0377320:CDS
ACAAGCATATAGATCAAATT+AGG 0.328233 3_1:+77737883 None:intergenic
TCCACCACCTTTGGTTCCTC+TGG 0.337500 3_1:+77740119 None:intergenic
CCATAAATGTTATAACAAAC+AGG 0.338368 3_1:+77739828 None:intergenic
TAGAAGAGTCTCAGCTGATT+TGG 0.338628 3_1:+77739210 None:intergenic
CGTTGGCTTCAAATTCTAAC+AGG 0.344786 3_1:-77741109 Msa0377320:five_prime_UTR
GTCTGTGCCAGATTGGAATC+TGG 0.348569 3_1:+77740987 None:intergenic
TTCTTTCACTTTGAAGTCTC+TGG 0.352608 3_1:+77739986 None:intergenic
TTCTTGTTGGTCTCTTCAGC+AGG 0.368545 3_1:+77740371 None:intergenic
AACAGGCTGGGCTATGTAAC+TGG 0.372569 3_1:-77741092 Msa0377320:five_prime_UTR
GAGCAACTTTCAGTCAAATA+TGG 0.373495 3_1:-77739071 Msa0377320:CDS
GGAGAAGAGTATTAGGAAGT+TGG 0.378620 3_1:-77739718 Msa0377320:CDS
GTCTTAATCAAAATCAACTA+TGG 0.378649 3_1:-77740810 Msa0377320:exon
GAAGAAGCTTCCACCACCTT+TGG 0.382704 3_1:+77740110 None:intergenic
AACCAGAAGAGGTTTCAATA+TGG 0.384526 3_1:-77740067 Msa0377320:CDS
CTTTCTTAATCTGAAGTTGA+AGG 0.385634 3_1:+77738089 None:intergenic
AAGCAATTGAAGGGCTTGTT+TGG 0.391690 3_1:+77739605 None:intergenic
TCAGCTTCAGTTGTTGTTGT+TGG 0.393012 3_1:+77740266 None:intergenic
AATCAGCTGAGACTCTTCTA+AGG 0.396379 3_1:-77739207 Msa0377320:intron
TCCTGAATTTGTAGCCAAAC+AGG 0.397889 3_1:-77739571 Msa0377320:intron
GCTAGTAGGCCCTCCGTGTT+TGG 0.400172 3_1:-77741070 Msa0377320:five_prime_UTR
TCTGCTTCTGCTTCTGGTGT+GGG 0.403305 3_1:+77740404 None:intergenic
TCTGCTTCTGGTGTGGGCTC+GGG 0.406078 3_1:+77740410 None:intergenic
CAAATAACACCGTTATTTCC+GGG 0.410392 3_1:-77741039 Msa0377320:five_prime_UTR
AACTACAAAATTGGTGAACC+TGG 0.412559 3_1:-77738182 Msa0377320:CDS
GGCTTCAAATTCTAACAGGC+TGG 0.417907 3_1:-77741105 Msa0377320:five_prime_UTR
CTTAGAGCTTGAATTGTCAA+TGG 0.418583 3_1:+77738145 None:intergenic
GTAAAGTATTAGTACCTGTT+TGG 0.422219 3_1:+77739557 None:intergenic
TTTGTTCTTTGTGTAAGAAA+AGG 0.424626 3_1:+77739259 None:intergenic
ACTTGCTCCTCCTCAGCAAC+AGG 0.426842 3_1:+77740746 None:intergenic
TTAATCTGAAGTTGAAGGCT+TGG 0.430689 3_1:+77738094 None:intergenic
TCTGTGTCCCAATAGTAAAA+AGG 0.437051 3_1:-77737811 Msa0377320:three_prime_UTR
GAGAAAACTGTTTACATGCA+TGG 0.439519 3_1:-77739870 Msa0377320:CDS
TCTGTGCCAGATTGGAATCT+GGG 0.439720 3_1:+77740988 None:intergenic
GGATAGAGGGGTTGTTTCGT+GGG 0.440935 3_1:+77740926 None:intergenic
GATTGGAATCTGGGCTCAAC+AGG 0.442208 3_1:+77740997 None:intergenic
TCAGTTGTTGTTGTTGGTAG+TGG 0.442852 3_1:+77740272 None:intergenic
TTCTGCTTCTGCTTCTGGTG+TGG 0.443749 3_1:+77740403 None:intergenic
ACTGGGCTTGGAGTAGTTGA+AGG 0.447024 3_1:+77740446 None:intergenic
TTCTTTGTCAGCTGGAACAG+TGG 0.452483 3_1:+77740700 None:intergenic
TCCAGAGTCTGGTTCGTTCA+AGG 0.461611 3_1:-77740576 Msa0377320:CDS
AGCTTGTCTAAGCTCCCATT+TGG 0.463609 3_1:+77739629 None:intergenic
GTGTGATGGGGATAGGATAG+AGG 0.466128 3_1:+77740912 None:intergenic
ACCAGAAGAGGTTTCAATAT+GGG 0.467828 3_1:-77740066 Msa0377320:CDS
CATGGGAGCTAAGAGTAATT+GGG 0.468056 3_1:-77738316 Msa0377320:CDS
AATTATCTTGAAGCAATTGA+AGG 0.470059 3_1:+77739595 None:intergenic
GAAATGGAGAATTCTGGTCT+TGG 0.470951 3_1:-77739739 Msa0377320:CDS
ATTCTCCTGGACCTACCAAA+TGG 0.471318 3_1:-77739644 Msa0377320:CDS
AGGATAGAGGGGTTGTTTCG+TGG 0.476967 3_1:+77740925 None:intergenic
GTGTAGCTTCCTTCTGAACT+TGG 0.478836 3_1:+77738263 None:intergenic
AATGATCTTAAGAATTCTCC+TGG 0.479288 3_1:-77739657 Msa0377320:CDS
AGGACCAGTCTGTGCCAGAT+TGG 0.480098 3_1:+77740980 None:intergenic
AGCTCCCATTTGGTAGGTCC+AGG 0.482236 3_1:+77739639 None:intergenic
TTGTAGTTGTTGCAAAGCAC+TGG 0.484047 3_1:+77738197 None:intergenic
GGCAGTGCCTGTTGCTGAGG+AGG 0.486650 3_1:-77740753 Msa0377320:CDS
TCATCAGATTCTTTGTCAGC+TGG 0.490379 3_1:+77740692 None:intergenic
TTATTATTGGATGAAAACTT+AGG 0.493600 3_1:-77739906 Msa0377320:CDS
AAGGAAGAGAGCACTATTGT+TGG 0.493837 3_1:-77740557 Msa0377320:CDS
TGCAGAACTGTCTACTCTCA+TGG 0.494143 3_1:-77738334 Msa0377320:intron
GGGCTATGTAACTGGCTAGT+AGG 0.494657 3_1:-77741084 Msa0377320:five_prime_UTR
ACACCGTTATTTCCGGGCCA+TGG 0.497800 3_1:-77741033 Msa0377320:five_prime_UTR
AGATGAACAGAACAATGAAC+AGG 0.499148 3_1:-77740348 Msa0377320:CDS
TGTCTAAGCTCCCATTTGGT+AGG 0.502674 3_1:+77739633 None:intergenic
GGAGAGTGGTGTAGTGTGAT+GGG 0.505695 3_1:+77740899 None:intergenic
TTCTCCTGGACCTACCAAAT+GGG 0.508042 3_1:-77739643 Msa0377320:CDS
CATTAAGTGGGTCCATGGCC+CGG 0.511063 3_1:+77741021 None:intergenic
TATTTGACTGAAAGTTGCTC+AGG 0.515624 3_1:+77739074 None:intergenic
GGTCCATGGCCCGGAAATAA+CGG 0.519376 3_1:+77741030 None:intergenic
ATCAAAATCAACTATGGCTG+AGG 0.520145 3_1:-77740804 Msa0377320:exon
TATGGTGGACTAAGCAAAGA+TGG 0.520271 3_1:-77739053 Msa0377320:CDS
GCTTCTTCTGTAGATGAAGA+TGG 0.521848 3_1:-77740197 Msa0377320:CDS
GTTGTTGTTGTTGGTAGTGG+TGG 0.522925 3_1:+77740275 None:intergenic
AAAGAGTGGGGCGGATGAGA+AGG 0.524597 3_1:+77740960 None:intergenic
CTGTTAGAATTTGAAGCCAA+CGG 0.527127 3_1:+77741110 None:intergenic
TCCTTGAACGAACCAGACTC+TGG 0.528848 3_1:+77740575 None:intergenic
GTTGAGCCCAGATTCCAATC+TGG 0.532116 3_1:-77740994 Msa0377320:five_prime_UTR
TTGTTGGTCTCTTCAGCAGG+TGG 0.536894 3_1:+77740374 None:intergenic
GGGAAGCAGTTATAAAGAGT+GGG 0.537800 3_1:+77740947 None:intergenic
TCCAGAGGAACCAAAGGTGG+TGG 0.538723 3_1:-77740120 Msa0377320:CDS
ATGGTGAGAACAACTTTCCC+AGG 0.541945 3_1:+77738164 None:intergenic
CCAGAAGAGGTTTCAATATG+GGG 0.547282 3_1:-77740065 Msa0377320:CDS
GATTCCAATCTGGCACAGAC+TGG 0.548284 3_1:-77740984 Msa0377320:five_prime_UTR
CAGGCCATTAAGTGGGTCCA+TGG 0.548475 3_1:+77741016 None:intergenic
TGGAGAGTGGTGTAGTGTGA+TGG 0.549657 3_1:+77740898 None:intergenic
TGGTGTAGTGTGATGGGGAT+AGG 0.550513 3_1:+77740905 None:intergenic
GAGTTTGTACCAAGTTCAGA+AGG 0.553555 3_1:-77738272 Msa0377320:CDS
GCTTCAAATTCTAACAGGCT+GGG 0.554058 3_1:-77741104 Msa0377320:five_prime_UTR
ATTATCTTGAAGCAATTGAA+GGG 0.556517 3_1:+77739596 None:intergenic
GGGTTGGAAAGAAATGTGAA+TGG 0.560559 3_1:-77741135 None:intergenic
AGAAATGTGAATGGAACCGT+TGG 0.566113 3_1:-77741126 Msa0377320:five_prime_UTR
ACAACAACAACAACCAGAAG+AGG 0.568417 3_1:-77740078 Msa0377320:CDS
GGCTCAACAGGCCATTAAGT+GGG 0.569499 3_1:+77741009 None:intergenic
GGGCTCAACAGGCCATTAAG+TGG 0.571417 3_1:+77741008 None:intergenic
TGAAGGAGATTGATGGAGAG+TGG 0.575247 3_1:+77740885 None:intergenic
TTATGGAGAGTTTGATAACA+AGG 0.578141 3_1:-77739811 Msa0377320:CDS
ATGCATGGATATGACAAAGA+AGG 0.578689 3_1:-77739855 Msa0377320:CDS
AGAGGCAGTGCCTGTTGCTG+AGG 0.578794 3_1:-77740756 Msa0377320:CDS
CTCAGTAACTGGAAATTCCA+CGG 0.580825 3_1:+77738971 None:intergenic
GGGGAAGCAGTTATAAAGAG+TGG 0.582308 3_1:+77740946 None:intergenic
GATAGAGGGGTTGTTTCGTG+GGG 0.588228 3_1:+77740927 None:intergenic
TAATCGTTATGATCTTGTGT+TGG 0.590693 3_1:-77738057 Msa0377320:three_prime_UTR
GTTCTATCGTCTGCAAGAAG+TGG 0.593136 3_1:+77740038 None:intergenic
AAAGATAGCCACAACTCAAG+AGG 0.593760 3_1:-77740774 Msa0377320:CDS
GGTGGTGGAAGCTTCTTCAC+CGG 0.595988 3_1:-77740105 Msa0377320:CDS
ACTGGGCTTTGATACCTCCT+CGG 0.596592 3_1:+77740613 None:intergenic
TGTGATGGGGATAGGATAGA+GGG 0.596822 3_1:+77740913 None:intergenic
AGGCACTGCCTCTTGAGTTG+TGG 0.597680 3_1:+77740766 None:intergenic
ACTACAAAATTGGTGAACCT+GGG 0.600044 3_1:-77738181 Msa0377320:CDS
TGATCAAGAACACTATCCGT+TGG 0.601471 3_1:-77739953 Msa0377320:CDS
GCAGAACTGTCTACTCTCAT+GGG 0.603658 3_1:-77738333 Msa0377320:intron
TGTTGCTGAGGAGGAGCAAG+TGG 0.604048 3_1:-77740744 Msa0377320:CDS
ATTGGGTGGGACATAAGCTA+TGG 0.608625 3_1:-77738299 Msa0377320:CDS
AGCAGAAAAGAAAGAAACAG+AGG 0.609236 3_1:-77740225 Msa0377320:CDS
CAACTTTCAGTCAAATATGG+TGG 0.612687 3_1:-77739068 Msa0377320:CDS
ATCAGTTCCAGAGGAACCAA+AGG 0.614270 3_1:-77740126 Msa0377320:CDS
ACAATAGTGCAAATACCACC+AGG 0.619339 3_1:+77739687 None:intergenic
AAACAACACTGCTGAGACCG+AGG 0.619853 3_1:-77740630 Msa0377320:CDS
GGGAGCTAAGAGTAATTGGG+TGG 0.623613 3_1:-77738313 Msa0377320:CDS
AGTTCCAGAGGAACCAAAGG+TGG 0.628144 3_1:-77740123 Msa0377320:CDS
CATAAATGTTATAACAAACA+GGG 0.628980 3_1:+77739829 None:intergenic
ATTTGACTCTCTACCAAACA+CGG 0.631193 3_1:+77741057 None:intergenic
AGAGTCTCAGCTGATTTGGA+AGG 0.633487 3_1:+77739214 None:intergenic
GACTCTCTACCAAACACGGA+GGG 0.636640 3_1:+77741061 None:intergenic
TTGAAGGCTTGGTCTTCAAG+CGG 0.637531 3_1:+77738105 None:intergenic
AGGTGTTTATCAATGTGCCA+TGG 0.641137 3_1:-77739312 Msa0377320:CDS
TGGAGAGTTTGATAACAAGG+AGG 0.651054 3_1:-77739808 Msa0377320:CDS
TGTAGCTTCATCAGTTCCAG+AGG 0.651074 3_1:-77740135 Msa0377320:CDS
CAGAAGAGGTTTCAATATGG+GGG 0.653215 3_1:-77740064 Msa0377320:CDS
GAGAGTGGTGTAGTGTGATG+GGG 0.658399 3_1:+77740900 None:intergenic
CGTGGAATTTCCAGTTACTG+AGG 0.660408 3_1:-77738970 Msa0377320:intron
AGAAATTACAGTGAGGCCTG+CGG 0.663813 3_1:-77739003 Msa0377320:CDS
GGAGCTAAGAGTAATTGGGT+GGG 0.668364 3_1:-77738312 Msa0377320:CDS
TGCTGAGGAGGAGCAAGTGG+TGG 0.671033 3_1:-77740741 Msa0377320:CDS
AGCAGTTATAAAGAGTGGGG+CGG 0.687982 3_1:+77740951 None:intergenic
GTGATGGGGATAGGATAGAG+GGG 0.699837 3_1:+77740914 None:intergenic
AATAGTGCAAATACCACCAG+GGG 0.702016 3_1:+77739689 None:intergenic
CAATAGTGCAAATACCACCA+GGG 0.705753 3_1:+77739688 None:intergenic
TGTTTATCAATGTGCCATGG+TGG 0.706720 3_1:-77739309 Msa0377320:CDS
GGAAGCAGTTATAAAGAGTG+GGG 0.706820 3_1:+77740948 None:intergenic
GGGCTTGGAGTAGTTGAAGG+TGG 0.709064 3_1:+77740449 None:intergenic
TTCACAGCTAAGTACCACCA+TGG 0.716803 3_1:+77739295 None:intergenic
GCCTGCGGCAAAACACACCG+TGG 0.718457 3_1:-77738988 Msa0377320:CDS
TGACTCTCTACCAAACACGG+AGG 0.735360 3_1:+77741060 None:intergenic
CAACACTGCTGAGACCGAGG+AGG 0.737926 3_1:-77740627 Msa0377320:CDS
CTGTTACAGAAATTACAGTG+AGG 0.780489 3_1:-77739010 Msa0377320:CDS
GAGGAGGTATCAAAGCCCAG+TGG 0.800821 3_1:-77740611 Msa0377320:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAGTATTATCTATTT+CGG + chr3_1:77740507-77740526 None:intergenic 10.0%
!!! TAAATTTCTTTTGTAAATTT+TGG - chr3_1:77741000-77741019 Msa0377320:five_prime_UTR 10.0%
!!! TCACAAAAATTTTTAAATGA+AGG + chr3_1:77738046-77738065 None:intergenic 15.0%
!!! TTTATTTGATTTTGTTTTGT+AGG - chr3_1:77739579-77739598 Msa0377320:CDS 15.0%
!!! ATGTTTCTTTGATATTTTAA+AGG - chr3_1:77740471-77740490 Msa0377320:CDS 15.0%
!!! TGTTTCTTTGATATTTTAAA+GGG - chr3_1:77740472-77740491 Msa0377320:CDS 15.0%
!!! AATAACGATGAAAAGTATTT+TGG + chr3_1:77738071-77738090 None:intergenic 20.0%
!! CAAAATTGAAGAGTTATTAT+TGG - chr3_1:77738992-77739011 Msa0377320:CDS 20.0%
!! TTATTATTGGATGAAAACTT+AGG - chr3_1:77739005-77739024 Msa0377320:CDS 20.0%
!! CATAAATGTTATAACAAACA+GGG + chr3_1:77739085-77739104 None:intergenic 20.0%
!! AAATTTAAGAACAACAATTG+TGG + chr3_1:77739489-77739508 None:intergenic 20.0%
!!! TAGTGTCTTAATTTGTTTTA+TGG - chr3_1:77739795-77739814 Msa0377320:CDS 20.0%
!! ACAAATTGTTGCATAAAATA+AGG + chr3_1:77740129-77740148 None:intergenic 20.0%
!! AAGGAATCATAAAATAAACA+TGG - chr3_1:77740192-77740211 Msa0377320:CDS 20.0%
!!! ATGACACATTAATTTTTTGA+GGG - chr3_1:77740323-77740342 Msa0377320:CDS 20.0%
!!! TTCTTTTTGCTGTATTATTT+TGG - chr3_1:77740895-77740914 Msa0377320:five_prime_UTR 20.0%
!!! TATTTTGGTTATTACTATTG+AGG - chr3_1:77740910-77740929 Msa0377320:five_prime_UTR 20.0%
!!! ATTTTGGTTATTACTATTGA+GGG - chr3_1:77740911-77740930 Msa0377320:five_prime_UTR 20.0%
!!! ATTTCTTTTGTAAATTTTGG+TGG - chr3_1:77741003-77741022 Msa0377320:five_prime_UTR 20.0%
!!! TTTCTTTTGTAAATTTTGGT+GGG - chr3_1:77741004-77741023 Msa0377320:five_prime_UTR 20.0%
!! TTTTAAATGAAGGAGATTGA+TGG + chr3_1:77738036-77738055 None:intergenic 25.0%
! GTCTTAATCAAAATCAACTA+TGG - chr3_1:77738101-77738120 Msa0377320:CDS 25.0%
! CCATAAATGTTATAACAAAC+AGG + chr3_1:77739086-77739105 None:intergenic 25.0%
!!! CCTGTTTGTTATAACATTTA+TGG - chr3_1:77739083-77739102 Msa0377320:CDS 25.0%
! ATTATCTTGAAGCAATTGAA+GGG + chr3_1:77739318-77739337 None:intergenic 25.0%
! AATTATCTTGAAGCAATTGA+AGG + chr3_1:77739319-77739338 None:intergenic 25.0%
! GCAATTAATATAACTGAAAC+TGG + chr3_1:77739397-77739416 None:intergenic 25.0%
! TTTGTTCTTTGTGTAAGAAA+AGG + chr3_1:77739655-77739674 None:intergenic 25.0%
! AATTAAGACACTAACAAACT+AGG + chr3_1:77739788-77739807 None:intergenic 25.0%
!!! TTTTTTAGATTGAGTATCCA+AGG - chr3_1:77740017-77740036 Msa0377320:CDS 25.0%
!! TTTTTAGATTGAGTATCCAA+GGG - chr3_1:77740018-77740037 Msa0377320:CDS 25.0%
! AATATAAATATGAAGACCAG+AGG + chr3_1:77740080-77740099 None:intergenic 25.0%
! TAAACAAACAAAAGAGGAAA+AGG + chr3_1:77740106-77740125 None:intergenic 25.0%
! ATAAGGTAAACAAACAAAAG+AGG + chr3_1:77740112-77740131 None:intergenic 25.0%
! CTCAAAAAATTAATGTGTCA+TGG + chr3_1:77740324-77740343 None:intergenic 25.0%
!!! CATGACACATTAATTTTTTG+AGG - chr3_1:77740322-77740341 Msa0377320:CDS 25.0%
!!! TTAATTTTTTGAGGGTTCAA+AGG - chr3_1:77740331-77740350 Msa0377320:CDS 25.0%
!!! ATGCATTGAAATTTTGTTGT+TGG - chr3_1:77740546-77740565 Msa0377320:CDS 25.0%
!!! TGCATTGAAATTTTGTTGTT+GGG - chr3_1:77740547-77740566 Msa0377320:CDS 25.0%
!!! TTTTGGTTATTACTATTGAG+GGG - chr3_1:77740912-77740931 Msa0377320:five_prime_UTR 25.0%
! ATTATATGCAGATGACTTAT+TGG - chr3_1:77740963-77740982 Msa0377320:five_prime_UTR 25.0%
!!! TTCTTTTGTAAATTTTGGTG+GGG - chr3_1:77741005-77741024 Msa0377320:five_prime_UTR 25.0%
! ACAAGCATATAGATCAAATT+AGG + chr3_1:77741031-77741050 None:intergenic 25.0%
!! CGTTTTTCCTTTTTACTATT+GGG + chr3_1:77741110-77741129 None:intergenic 25.0%
!!! TCGTTTTTCCTTTTTACTAT+TGG + chr3_1:77741111-77741130 None:intergenic 25.0%
! TCAAATAACACCGTTATTTC+CGG - chr3_1:77737871-77737890 Msa0377320:three_prime_UTR 30.0%
! TTCTTTTCTGCTTCTTCTTT+TGG + chr3_1:77738678-77738697 None:intergenic 30.0%
! TTTTGAACTCTTTTCTCCAA+CGG + chr3_1:77738977-77738996 None:intergenic 30.0%
! TTATGGAGAGTTTGATAACA+AGG - chr3_1:77739100-77739119 Msa0377320:intron 30.0%
AGAGAGAAAAGTTCTTGAAA+TGG - chr3_1:77739156-77739175 Msa0377320:intron 30.0%
AATGATCTTAAGAATTCTCC+TGG - chr3_1:77739254-77739273 Msa0377320:CDS 30.0%
! GTAAAGTATTAGTACCTGTT+TGG + chr3_1:77739357-77739376 None:intergenic 30.0%
AAAAGCAAGTTTGTATTTGC+TGG - chr3_1:77739673-77739692 Msa0377320:CDS 30.0%
AGATACTAGATGCTTTATCA+AGG - chr3_1:77740173-77740192 Msa0377320:CDS 30.0%
!! ATGGTCATTTTGTTAAGTCA+TGG + chr3_1:77740305-77740324 None:intergenic 30.0%
! GTCTATGATTTTGCTAAACT+TGG + chr3_1:77740400-77740419 None:intergenic 30.0%
!! AAGCAATTTTTCTAGTCTTC+TGG + chr3_1:77740683-77740702 None:intergenic 30.0%
CTTTGCAACAACTACAAAAT+TGG - chr3_1:77740720-77740739 Msa0377320:CDS 30.0%
! CTTTCTTAATCTGAAGTTGA+AGG + chr3_1:77740825-77740844 None:intergenic 30.0%
TAATCGTTATGATCTTGTGT+TGG - chr3_1:77740854-77740873 Msa0377320:five_prime_UTR 30.0%
! CTGTTAGAATTTGAAGCCAA+CGG + chr3_1:77737804-77737823 None:intergenic 35.0%
ATTTGACTCTCTACCAAACA+CGG + chr3_1:77737857-77737876 None:intergenic 35.0%
! CAAATAACACCGTTATTTCC+GGG - chr3_1:77737872-77737891 Msa0377320:three_prime_UTR 35.0%
ATCAAAATCAACTATGGCTG+AGG - chr3_1:77738107-77738126 Msa0377320:CDS 35.0%
!!! GGAATTTTTTCATCACCACT+GGG + chr3_1:77738318-77738337 None:intergenic 35.0%
!!! TGGAATTTTTTCATCACCAC+TGG + chr3_1:77738319-77738338 None:intergenic 35.0%
GATGAAAAAATTCCAGAGTC+TGG - chr3_1:77738324-77738343 Msa0377320:CDS 35.0%
! TTTTGTTCTTTAACTGGGCT+TGG + chr3_1:77738480-77738499 None:intergenic 35.0%
GTTCTGTTCATCTTTCTTGT+TGG + chr3_1:77738556-77738575 None:intergenic 35.0%
AGATGAACAGAACAATGAAC+AGG - chr3_1:77738563-77738582 Msa0377320:intron 35.0%
AGCAGAAAAGAAAGAAACAG+AGG - chr3_1:77738686-77738705 Msa0377320:intron 35.0%
AACCAGAAGAGGTTTCAATA+TGG - chr3_1:77738844-77738863 Msa0377320:intron 35.0%
ACCAGAAGAGGTTTCAATAT+GGG - chr3_1:77738845-77738864 Msa0377320:intron 35.0%
!! TTCTTTCACTTTGAAGTCTC+TGG + chr3_1:77738928-77738947 None:intergenic 35.0%
GAGAAAACTGTTTACATGCA+TGG - chr3_1:77739041-77739060 Msa0377320:CDS 35.0%
ATGCATGGATATGACAAAGA+AGG - chr3_1:77739056-77739075 Msa0377320:CDS 35.0%
GTTCTTGAAATGGAGAATTC+TGG - chr3_1:77739166-77739185 Msa0377320:intron 35.0%
CTGATACCACTAAATAGATG+CGG - chr3_1:77739463-77739482 Msa0377320:intron 35.0%
TATTTGACTGAAAGTTGCTC+AGG + chr3_1:77739840-77739859 None:intergenic 35.0%
GAGCAACTTTCAGTCAAATA+TGG - chr3_1:77739840-77739859 Msa0377320:CDS 35.0%
CAACTTTCAGTCAAATATGG+TGG - chr3_1:77739843-77739862 Msa0377320:CDS 35.0%
CTAAGCAAAGATGGTGAATT+TGG - chr3_1:77739867-77739886 Msa0377320:CDS 35.0%
CTGTTACAGAAATTACAGTG+AGG - chr3_1:77739901-77739920 Msa0377320:CDS 35.0%
! TTACCTTTCTGTGTTTTGTC+AGG - chr3_1:77739985-77740004 Msa0377320:CDS 35.0%
AATCCTGACAAAACACAGAA+AGG + chr3_1:77739991-77740010 None:intergenic 35.0%
! TGTGTTTTGTCAGGATTGAT+TGG - chr3_1:77739994-77740013 Msa0377320:CDS 35.0%
TGGATTGTGTAATCTTTCCT+AGG - chr3_1:77740051-77740070 Msa0377320:CDS 35.0%
ATCTAGTATCTCTCAAGTCA+GGG + chr3_1:77740164-77740183 None:intergenic 35.0%
GGAAACAGACATACTTCAAT+TGG - chr3_1:77740213-77740232 Msa0377320:CDS 35.0%
! TGGCATTGTCATTGTGATTT+TGG + chr3_1:77740367-77740386 None:intergenic 35.0%
AACTACAAAATTGGTGAACC+TGG - chr3_1:77740729-77740748 Msa0377320:CDS 35.0%
ACTACAAAATTGGTGAACCT+GGG - chr3_1:77740730-77740749 Msa0377320:CDS 35.0%
CTTAGAGCTTGAATTGTCAA+TGG + chr3_1:77740769-77740788 None:intergenic 35.0%
! TTAATCTGAAGTTGAAGGCT+TGG + chr3_1:77740820-77740839 None:intergenic 35.0%
TCTGTGTCCCAATAGTAAAA+AGG - chr3_1:77741100-77741119 Msa0377320:five_prime_UTR 35.0%
AGAAATGTGAATGGAACCGT+TGG - chr3_1:77737785-77737804 Msa0377320:three_prime_UTR 40.0%
!! CGTTGGCTTCAAATTCTAAC+AGG - chr3_1:77737802-77737821 Msa0377320:three_prime_UTR 40.0%
GCTTCAAATTCTAACAGGCT+GGG - chr3_1:77737807-77737826 Msa0377320:three_prime_UTR 40.0%
GGAAGCAGTTATAAAGAGTG+GGG + chr3_1:77737966-77737985 None:intergenic 40.0%
GGGAAGCAGTTATAAAGAGT+GGG + chr3_1:77737967-77737986 None:intergenic 40.0%
! TCTTGAGTTGTGGCTATCTT+TGG + chr3_1:77738138-77738157 None:intergenic 40.0%
AAAGATAGCCACAACTCAAG+AGG - chr3_1:77738137-77738156 Msa0377320:CDS 40.0%
TCATCAGATTCTTTGTCAGC+TGG + chr3_1:77738222-77738241 None:intergenic 40.0%
!! TTTTCAACGGGCTTTTTCTC+GGG + chr3_1:77738264-77738283 None:intergenic 40.0%
!! GTTTTCAACGGGCTTTTTCT+CGG + chr3_1:77738265-77738284 None:intergenic 40.0%
!!! TCAGCAGTGTTGTTTTCAAC+GGG + chr3_1:77738276-77738295 None:intergenic 40.0%
!!! CTCAGCAGTGTTGTTTTCAA+CGG + chr3_1:77738277-77738296 None:intergenic 40.0%
!! AAGGAAGAGAGCACTATTGT+TGG - chr3_1:77738354-77738373 Msa0377320:intron 40.0%
! CGGGCTTTTGTTCTTTAACT+GGG + chr3_1:77738485-77738504 None:intergenic 40.0%
! TCGGGCTTTTGTTCTTTAAC+TGG + chr3_1:77738486-77738505 None:intergenic 40.0%
! TCAGTTGTTGTTGTTGGTAG+TGG + chr3_1:77738642-77738661 None:intergenic 40.0%
! TCAGCTTCAGTTGTTGTTGT+TGG + chr3_1:77738648-77738667 None:intergenic 40.0%
GCTTCTTCTGTAGATGAAGA+TGG - chr3_1:77738714-77738733 Msa0377320:intron 40.0%
! GGTTGTTGTTGTTGTTGTTC+CGG + chr3_1:77738828-77738847 None:intergenic 40.0%
ACAACAACAACAACCAGAAG+AGG - chr3_1:77738833-77738852 Msa0377320:intron 40.0%
CCAGAAGAGGTTTCAATATG+GGG - chr3_1:77738846-77738865 Msa0377320:intron 40.0%
CAGAAGAGGTTTCAATATGG+GGG - chr3_1:77738847-77738866 Msa0377320:intron 40.0%
TGATCAAGAACACTATCCGT+TGG - chr3_1:77738958-77738977 Msa0377320:intron 40.0%
! TGGAGAGTTTGATAACAAGG+AGG - chr3_1:77739103-77739122 Msa0377320:intron 40.0%
GAAATGGAGAATTCTGGTCT+TGG - chr3_1:77739172-77739191 Msa0377320:intron 40.0%
!! TGGTCTTGGAGAAGAGTATT+AGG - chr3_1:77739186-77739205 Msa0377320:intron 40.0%
!! GGAGAAGAGTATTAGGAAGT+TGG - chr3_1:77739193-77739212 Msa0377320:intron 40.0%
AATAGTGCAAATACCACCAG+GGG + chr3_1:77739225-77739244 None:intergenic 40.0%
CAATAGTGCAAATACCACCA+GGG + chr3_1:77739226-77739245 None:intergenic 40.0%
ACAATAGTGCAAATACCACC+AGG + chr3_1:77739227-77739246 None:intergenic 40.0%
! AAGCAATTGAAGGGCTTGTT+TGG + chr3_1:77739309-77739328 None:intergenic 40.0%
TCCTGAATTTGTAGCCAAAC+AGG - chr3_1:77739340-77739359 Msa0377320:intron 40.0%
ACCTGTTTGGCTACAAATTC+AGG + chr3_1:77739344-77739363 None:intergenic 40.0%
CGCATCTATTTAGTGGTATC+AGG + chr3_1:77739465-77739484 None:intergenic 40.0%
AGGTGTTTATCAATGTGCCA+TGG - chr3_1:77739599-77739618 Msa0377320:CDS 40.0%
TGTTTATCAATGTGCCATGG+TGG - chr3_1:77739602-77739621 Msa0377320:CDS 40.0%
TAGAAGAGTCTCAGCTGATT+TGG + chr3_1:77739704-77739723 None:intergenic 40.0%
AATCAGCTGAGACTCTTCTA+AGG - chr3_1:77739704-77739723 Msa0377320:CDS 40.0%
!! CTGAGACTCTTCTAAGGTAA+AGG - chr3_1:77739710-77739729 Msa0377320:CDS 40.0%
!! TATGGTGGACTAAGCAAAGA+TGG - chr3_1:77739858-77739877 Msa0377320:CDS 40.0%
CTCAGTAACTGGAAATTCCA+CGG + chr3_1:77739943-77739962 None:intergenic 40.0%
TCCAGTTACTGAGGTGAATT+TGG - chr3_1:77739950-77739969 Msa0377320:CDS 40.0%
ACCAAATTCACCTCAGTAAC+TGG + chr3_1:77739954-77739973 None:intergenic 40.0%
AATCTTTCCTAGGATTCCTC+TGG - chr3_1:77740061-77740080 Msa0377320:CDS 40.0%
CATCTAGTATCTCTCAAGTC+AGG + chr3_1:77740165-77740184 None:intergenic 40.0%
AATGACAATGCCACGTGATT+TGG - chr3_1:77740374-77740393 Msa0377320:CDS 40.0%
TCATGGGAGCTAAGAGTAAT+TGG - chr3_1:77740594-77740613 Msa0377320:CDS 40.0%
CATGGGAGCTAAGAGTAATT+GGG - chr3_1:77740595-77740614 Msa0377320:CDS 40.0%
GAGTTTGTACCAAGTTCAGA+AGG - chr3_1:77740639-77740658 Msa0377320:CDS 40.0%
TTGTAGTTGTTGCAAAGCAC+TGG + chr3_1:77740717-77740736 None:intergenic 40.0%
GGCTTCAAATTCTAACAGGC+TGG - chr3_1:77737806-77737825 Msa0377320:three_prime_UTR 45.0%
TCTGTGCCAGATTGGAATCT+GGG + chr3_1:77737926-77737945 None:intergenic 45.0%
AGCAGTTATAAAGAGTGGGG+CGG + chr3_1:77737963-77737982 None:intergenic 45.0%
GGGGAAGCAGTTATAAAGAG+TGG + chr3_1:77737968-77737987 None:intergenic 45.0%
! TGTGATGGGGATAGGATAGA+GGG + chr3_1:77738001-77738020 None:intergenic 45.0%
TGAAGGAGATTGATGGAGAG+TGG + chr3_1:77738029-77738048 None:intergenic 45.0%
TTCTTTGTCAGCTGGAACAG+TGG + chr3_1:77738214-77738233 None:intergenic 45.0%
AGTGCTTTCTTCTCAGCTTC+AGG + chr3_1:77738387-77738406 None:intergenic 45.0%
TGTGATTCTGCTTCTGCTTC+TGG + chr3_1:77738516-77738535 None:intergenic 45.0%
! TTCTTGTTGGTCTCTTCAGC+AGG + chr3_1:77738543-77738562 None:intergenic 45.0%
!! GTTGTTGTTGTTGGTAGTGG+TGG + chr3_1:77738639-77738658 None:intergenic 45.0%
TGTAGCTTCATCAGTTCCAG+AGG - chr3_1:77738776-77738795 Msa0377320:intron 45.0%
ATCAGTTCCAGAGGAACCAA+AGG - chr3_1:77738785-77738804 Msa0377320:intron 45.0%
CCCCATATTGAAACCTCTTC+TGG + chr3_1:77738849-77738868 None:intergenic 45.0%
GTTCTATCGTCTGCAAGAAG+TGG + chr3_1:77738876-77738895 None:intergenic 45.0%
! AGGAAGTTGGATTTTACCCC+TGG - chr3_1:77739206-77739225 Msa0377320:intron 45.0%
! AAGTTGGATTTTACCCCTGG+TGG - chr3_1:77739209-77739228 Msa0377320:CDS 45.0%
ATTCTCCTGGACCTACCAAA+TGG - chr3_1:77739267-77739286 Msa0377320:CDS 45.0%
TTCTCCTGGACCTACCAAAT+GGG - chr3_1:77739268-77739287 Msa0377320:CDS 45.0%
TGTCTAAGCTCCCATTTGGT+AGG + chr3_1:77739281-77739300 None:intergenic 45.0%
AGCTTGTCTAAGCTCCCATT+TGG + chr3_1:77739285-77739304 None:intergenic 45.0%
TTGTGGCCGCATCTATTTAG+TGG + chr3_1:77739472-77739491 None:intergenic 45.0%
TTCACAGCTAAGTACCACCA+TGG + chr3_1:77739619-77739638 None:intergenic 45.0%
!! AGAGTCTCAGCTGATTTGGA+AGG + chr3_1:77739700-77739719 None:intergenic 45.0%
AGAAATTACAGTGAGGCCTG+CGG - chr3_1:77739908-77739927 Msa0377320:CDS 45.0%
CGTGGAATTTCCAGTTACTG+AGG - chr3_1:77739941-77739960 Msa0377320:CDS 45.0%
TATCCAAGGGAACGTTGCAT+TGG - chr3_1:77740031-77740050 Msa0377320:CDS 45.0%
AATCCAATGCAACGTTCCCT+TGG + chr3_1:77740037-77740056 None:intergenic 45.0%
ATGAAGACCAGAGGAATCCT+AGG + chr3_1:77740071-77740090 None:intergenic 45.0%
TATCTCTCAAGTCAGGGCAT+AGG + chr3_1:77740158-77740177 None:intergenic 45.0%
CTAAACTTGGCCAAATCACG+TGG + chr3_1:77740387-77740406 None:intergenic 45.0%
TGCAGAACTGTCTACTCTCA+TGG - chr3_1:77740577-77740596 Msa0377320:CDS 45.0%
GCAGAACTGTCTACTCTCAT+GGG - chr3_1:77740578-77740597 Msa0377320:CDS 45.0%
GGAGCTAAGAGTAATTGGGT+GGG - chr3_1:77740599-77740618 Msa0377320:CDS 45.0%
ATTGGGTGGGACATAAGCTA+TGG - chr3_1:77740612-77740631 Msa0377320:CDS 45.0%
GTGTAGCTTCCTTCTGAACT+TGG + chr3_1:77740651-77740670 None:intergenic 45.0%
ATGGTGAGAACAACTTTCCC+AGG + chr3_1:77740750-77740769 None:intergenic 45.0%
! TTGAAGGCTTGGTCTTCAAG+CGG + chr3_1:77740809-77740828 None:intergenic 45.0%
AACAGGCTGGGCTATGTAAC+TGG - chr3_1:77737819-77737838 Msa0377320:three_prime_UTR 50.0%
GGGCTATGTAACTGGCTAGT+AGG - chr3_1:77737827-77737846 Msa0377320:three_prime_UTR 50.0%
GACTCTCTACCAAACACGGA+GGG + chr3_1:77737853-77737872 None:intergenic 50.0%
TGACTCTCTACCAAACACGG+AGG + chr3_1:77737854-77737873 None:intergenic 50.0%
GGCTCAACAGGCCATTAAGT+GGG + chr3_1:77737905-77737924 None:intergenic 50.0%
GATTGGAATCTGGGCTCAAC+AGG + chr3_1:77737917-77737936 None:intergenic 50.0%
GTTGAGCCCAGATTCCAATC+TGG - chr3_1:77737917-77737936 Msa0377320:three_prime_UTR 50.0%
GTCTGTGCCAGATTGGAATC+TGG + chr3_1:77737927-77737946 None:intergenic 50.0%
GATTCCAATCTGGCACAGAC+TGG - chr3_1:77737927-77737946 Msa0377320:three_prime_UTR 50.0%
! GATAGAGGGGTTGTTTCGTG+GGG + chr3_1:77737987-77738006 None:intergenic 50.0%
! GGATAGAGGGGTTGTTTCGT+GGG + chr3_1:77737988-77738007 None:intergenic 50.0%
! AGGATAGAGGGGTTGTTTCG+TGG + chr3_1:77737989-77738008 None:intergenic 50.0%
! GTGATGGGGATAGGATAGAG+GGG + chr3_1:77738000-77738019 None:intergenic 50.0%
! GTGTGATGGGGATAGGATAG+AGG + chr3_1:77738002-77738021 None:intergenic 50.0%
! TGGTGTAGTGTGATGGGGAT+AGG + chr3_1:77738009-77738028 None:intergenic 50.0%
GAGAGTGGTGTAGTGTGATG+GGG + chr3_1:77738014-77738033 None:intergenic 50.0%
GGAGAGTGGTGTAGTGTGAT+GGG + chr3_1:77738015-77738034 None:intergenic 50.0%
TGGAGAGTGGTGTAGTGTGA+TGG + chr3_1:77738016-77738035 None:intergenic 50.0%
!!! TTTTTCTCGGGCTCTGGGTT+GGG + chr3_1:77738252-77738271 None:intergenic 50.0%
AAACAACACTGCTGAGACCG+AGG - chr3_1:77738281-77738300 Msa0377320:CDS 50.0%
! ACTGGGCTTTGATACCTCCT+CGG + chr3_1:77738301-77738320 None:intergenic 50.0%
! TCCAGAGTCTGGTTCGTTCA+AGG - chr3_1:77738335-77738354 Msa0377320:intron 50.0%
TCCTTGAACGAACCAGACTC+TGG + chr3_1:77738339-77738358 None:intergenic 50.0%
ACTGGGCTTGGAGTAGTTGA+AGG + chr3_1:77738468-77738487 None:intergenic 50.0%
TCTGCTTCTGCTTCTGGTGT+GGG + chr3_1:77738510-77738529 None:intergenic 50.0%
TTCTGCTTCTGCTTCTGGTG+TGG + chr3_1:77738511-77738530 None:intergenic 50.0%
! TTGTTGGTCTCTTCAGCAGG+TGG + chr3_1:77738540-77738559 None:intergenic 50.0%
AGTTCCAGAGGAACCAAAGG+TGG - chr3_1:77738788-77738807 Msa0377320:intron 50.0%
GAAGAAGCTTCCACCACCTT+TGG + chr3_1:77738804-77738823 None:intergenic 50.0%
GGGAGCTAAGAGTAATTGGG+TGG - chr3_1:77740598-77740617 Msa0377320:CDS 50.0%
! ACACCGTTATTTCCGGGCCA+TGG - chr3_1:77737878-77737897 Msa0377320:three_prime_UTR 55.0%
GGTCCATGGCCCGGAAATAA+CGG + chr3_1:77737884-77737903 None:intergenic 55.0%
CATTAAGTGGGTCCATGGCC+CGG + chr3_1:77737893-77737912 None:intergenic 55.0%
CAGGCCATTAAGTGGGTCCA+TGG + chr3_1:77737898-77737917 None:intergenic 55.0%
GGGCTCAACAGGCCATTAAG+TGG + chr3_1:77737906-77737925 None:intergenic 55.0%
AGGACCAGTCTGTGCCAGAT+TGG + chr3_1:77737934-77737953 None:intergenic 55.0%
AAAGAGTGGGGCGGATGAGA+AGG + chr3_1:77737954-77737973 None:intergenic 55.0%
! AGGCACTGCCTCTTGAGTTG+TGG + chr3_1:77738148-77738167 None:intergenic 55.0%
ACTTGCTCCTCCTCAGCAAC+AGG + chr3_1:77738168-77738187 None:intergenic 55.0%
TGTTGCTGAGGAGGAGCAAG+TGG - chr3_1:77738167-77738186 Msa0377320:CDS 55.0%
!!! CTTTTTCTCGGGCTCTGGGT+TGG + chr3_1:77738253-77738272 None:intergenic 55.0%
!! GAGGAGGTATCAAAGCCCAG+TGG - chr3_1:77738300-77738319 Msa0377320:CDS 55.0%
GGGCTTGGAGTAGTTGAAGG+TGG + chr3_1:77738465-77738484 None:intergenic 55.0%
TTCTGCTTCTGGTGTGGGCT+CGG + chr3_1:77738505-77738524 None:intergenic 55.0%
TCCAGAGGAACCAAAGGTGG+TGG - chr3_1:77738791-77738810 Msa0377320:intron 55.0%
! TCCACCACCTTTGGTTCCTC+TGG + chr3_1:77738795-77738814 None:intergenic 55.0%
!! GGTGGTGGAAGCTTCTTCAC+CGG - chr3_1:77738806-77738825 Msa0377320:intron 55.0%
AGCTCCCATTTGGTAGGTCC+AGG + chr3_1:77739275-77739294 None:intergenic 55.0%
GCTAGTAGGCCCTCCGTGTT+TGG - chr3_1:77737841-77737860 Msa0377320:three_prime_UTR 60.0%
CGGGCCATGGACCCACTTAA+TGG - chr3_1:77737891-77737910 Msa0377320:three_prime_UTR 60.0%
AGAGGCAGTGCCTGTTGCTG+AGG - chr3_1:77738155-77738174 Msa0377320:CDS 60.0%
TGCTGAGGAGGAGCAAGTGG+TGG - chr3_1:77738170-77738189 Msa0377320:CDS 60.0%
!! CGGGCTTTTTCTCGGGCTCT+GGG + chr3_1:77738257-77738276 None:intergenic 60.0%
!! ACGGGCTTTTTCTCGGGCTC+TGG + chr3_1:77738258-77738277 None:intergenic 60.0%
CAACACTGCTGAGACCGAGG+AGG - chr3_1:77738284-77738303 Msa0377320:CDS 60.0%
TCTGCTTCTGGTGTGGGCTC+GGG + chr3_1:77738504-77738523 None:intergenic 60.0%
! TCCACGGTGTGTTTTGCCGC+AGG + chr3_1:77739927-77739946 None:intergenic 60.0%
GGCAGTGCCTGTTGCTGAGG+AGG - chr3_1:77738158-77738177 Msa0377320:CDS 65.0%
!! TCGGGCTCTGGGTTGGGCTT+GGG + chr3_1:77738246-77738265 None:intergenic 65.0%
GCCTGCGGCAAAACACACCG+TGG - chr3_1:77739923-77739942 Msa0377320:CDS 65.0%
!! CTCGGGCTCTGGGTTGGGCT+TGG + chr3_1:77738247-77738266 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 77737784 77741149 77737784 ID=Msa0377320;Name=Msa0377320
chr3_1 mRNA 77737784 77741149 77737784 ID=Msa0377320-mRNA-1;Parent=Msa0377320;Name=Msa0377320-mRNA-1;_AED=0.02;_eAED=0.02;_QI=336|1|1|1|1|1|4|310|586
chr3_1 exon 77737784 77738351 77737784 ID=Msa0377320-mRNA-1:exon:18605;Parent=Msa0377320-mRNA-1
chr3_1 exon 77738971 77739106 77738971 ID=Msa0377320-mRNA-1:exon:18604;Parent=Msa0377320-mRNA-1
chr3_1 exon 77739208 77739332 77739208 ID=Msa0377320-mRNA-1:exon:18603;Parent=Msa0377320-mRNA-1
chr3_1 exon 77739572 77741149 77739572 ID=Msa0377320-mRNA-1:exon:18602;Parent=Msa0377320-mRNA-1
chr3_1 five_prime_UTR 77740814 77741149 77740814 ID=Msa0377320-mRNA-1:five_prime_utr;Parent=Msa0377320-mRNA-1
chr3_1 CDS 77739572 77740813 77739572 ID=Msa0377320-mRNA-1:cds;Parent=Msa0377320-mRNA-1
chr3_1 CDS 77739208 77739332 77739208 ID=Msa0377320-mRNA-1:cds;Parent=Msa0377320-mRNA-1
chr3_1 CDS 77738971 77739106 77738971 ID=Msa0377320-mRNA-1:cds;Parent=Msa0377320-mRNA-1
chr3_1 CDS 77738094 77738351 77738094 ID=Msa0377320-mRNA-1:cds;Parent=Msa0377320-mRNA-1
chr3_1 three_prime_UTR 77737784 77738093 77737784 ID=Msa0377320-mRNA-1:three_prime_utr;Parent=Msa0377320-mRNA-1
Gene Sequence

>Msa0377320

ATGGCTGAGGAATCTCCAAAGATAGCCACAACTCAAGAGGCAGTGCCTGTTGCTGAGGAGGAGCAAGTGGTGGTCACTCAAAAAACAGAATCCACTGTTCCAGCTGACAAAGAATCTGATGAGCCCAAGCCCAACCCAGAGCCCGAGAAAAAGCCCGTTGAAAACAACACTGCTGAGACCGAGGAGGTATCAAAGCCCAGTGGTGATGAAAAAATTCCAGAGTCTGGTTCGTTCAAGGAAGAGAGCACTATTGTTGGTGAGCTACCTGAAGCTGAGAAGAAAGCACTTACAGAGCTGAAACAGCTTATTCAAGAAGCACTTAACAAACATGAATTCTCTGCACCACCTTCAACTACTCCAAGCCCAGTTAAAGAACAAAAGCCCGAGCCCACACCAGAAGCAGAAGCAGAATCACAACCACCTGCTGAAGAGACCAACAAGAAAGATGAACAGAACAATGAACAGGTTTCTGAAACAGAATCTGTTGTTGCTGTTACTACTGATGAAGTATCAACACCACCACTACCAACAACAACAACTGAAGCTGAACAACAACCAAAAGAAGAAGCAGAAAAGAAAGAAACAGAGGTTGCTGCTTCTTCTGTAGATGAAGATGGAGCAAAAACAGTTGAAGCAATTGAAGAATCTGTTGTAGCTGTAGCTTCATCAGTTCCAGAGGAACCAAAGGTGGTGGAAGCTTCTTCACCGGAACAACAACAACAACAACCAGAAGAGGTTTCAATATGGGGGATACCACTTCTTGCAGACGATAGAACTGACGTGATTCTGTTAAAGTTTCTACGTGCCAGAGACTTCAAAGTGAAAGAAGCATTCACAATGATCAAGAACACTATCCGTTGGAGAAAAGAGTTCAAAATTGAAGAGTTATTATTGGATGAAAACTTAGGTGATGAATATTTAGAGAAAACTGTTTACATGCATGGATATGACAAAGAAGGACACCCTGTTTGTTATAACATTTATGGAGAGTTTGATAACAAGGAGGTTTATAAGAAAACATTTTCTGATGAAGAGAAGAGAGAAAAGTTCTTGAAATGGAGAATTCTGGTCTTGGAGAAGAGTATTAGGAAGTTGGATTTTACCCCTGGTGGTATTTGCACTATTGTTCAAGTTAATGATCTTAAGAATTCTCCTGGACCTACCAAATGGGAGCTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAAGATAATTATCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTAGCTGTGAACAGAATGATAAGTCCTTTTCTTACACAAAGAACAAAAAGCAAGTTTGTATTTGCTGGACCTTCCAAATCAGCTGAGACTCTTCTAAGTTACATAGCTCCTGAGCAACTTTCAGTCAAATATGGTGGACTAAGCAAAGATGGTGAATTTGGAATTACTGATGCTGTTACAGAAATTACAGTGAGGCCTGCGGCAAAACACACCGTGGAATTTCCAGTTACTGAGAACTGTCTACTCTCATGGGAGCTAAGAGTAATTGGGTGGGACATAAGCTATGGTGCAGAGTTTGTACCAAGTTCAGAAGGAAGCTACACTGTTATAATCCAGAAGACTAGAAAAATTGCTTCATCAGAAGAACCAGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAATTCAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCAACTTCAGATTAA
Protein sequence

>Msa0377320

MAEESPKIATTQEAVPVAEEEQVVVTQKTESTVPADKESDEPKPNPEPEKKPVENNTAETEEVSKPSGDEKIPESGSFKEESTIVGELPEAEKKALTELKQLIQEALNKHEFSAPPSTTPSPVKEQKPEPTPEAEAESQPPAEETNKKDEQNNEQVSETESVVAVTTDEVSTPPLPTTTTEAEQQPKEEAEKKETEVAASSVDEDGAKTVEAIEESVVAVASSVPEEPKVVEASSPEQQQQQPEEVSIWGIPLLADDRTDVILLKFLRARDFKVKEAFTMIKNTIRWRKEFKIEELLLDENLGDEYLEKTVYMHGYDKEGHPVCYNIYGEFDNKEVYKKTFSDEEKREKFLKWRILVLEKSIRKLDFTPGGICTIVQVNDLKNSPGPTKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLSYIAPEQLSVKYGGLSKDGEFGITDAVTEITVRPAAKHTVEFPVTENCLLSWELRVIGWDISYGAEFVPSSEGSYTVIIQKTRKIASSEEPVLCNNYKIGEPGKVVLTIDNSSSKKKKLLYRLKTKPSTSD*