Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429900 | XP_003603014.1 | 97.333 | 225 | 6 | 0 | 1 | 225 | 1 | 225 | 1.34e-159 | 457 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429900 | sp|O48723|PLP2_ARATH | 71.628 | 215 | 61 | 0 | 11 | 225 | 10 | 224 | 3.25e-109 | 322 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429900 | G7J6A8 | 97.333 | 225 | 6 | 0 | 1 | 225 | 1 | 225 | 6.41e-160 | 457 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026420 | Msa0429900 | 0.818065 | 2.380390e-52 | -8.615850e-47 |
| Msa0429900 | Msa0429910 | 0.832149 | 1.114665e-55 | -8.615850e-47 |
| Msa0429900 | Msa0500770 | 0.914518 | 1.744733e-84 | -8.615850e-47 |
| Msa0429900 | Msa0740630 | 0.807132 | 5.869966e-50 | -8.615850e-47 |
| Msa0429900 | Msa0820880 | 0.810895 | 9.181152e-51 | -8.615850e-47 |
| Msa0429900 | Msa1027910 | 0.803968 | 2.705621e-49 | -8.615850e-47 |
| Msa0429900 | Msa1084890 | 0.806561 | 7.748091e-50 | -8.615850e-47 |
| Msa0429900 | Msa1399930 | 0.924093 | 1.116256e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429900 | MtrunA17_Chr3g0133681 | 97.333 | 225 | 6 | 0 | 1 | 225 | 1 | 225 | 1.23e-163 | 457 |
| Msa0429900 | MtrunA17_Chr3g0133691 | 93.333 | 225 | 15 | 0 | 1 | 225 | 1 | 225 | 4.74e-146 | 413 |
| Msa0429900 | MtrunA17_Chr1g0153781 | 78.125 | 224 | 47 | 2 | 4 | 225 | 5 | 228 | 2.18e-127 | 366 |
| Msa0429900 | MtrunA17_Chr5g0402441 | 60.455 | 220 | 82 | 3 | 7 | 224 | 6 | 222 | 1.34e-92 | 277 |
| Msa0429900 | MtrunA17_Chr5g0402451 | 61.429 | 210 | 78 | 2 | 18 | 224 | 8 | 217 | 7.78e-92 | 275 |
| Msa0429900 | MtrunA17_Chr8g0335581 | 54.299 | 221 | 87 | 5 | 10 | 226 | 11 | 221 | 4.03e-74 | 230 |
| Msa0429900 | MtrunA17_Chr8g0335611 | 53.211 | 218 | 89 | 4 | 10 | 224 | 22 | 229 | 9.47e-72 | 224 |
| Msa0429900 | MtrunA17_Chr8g0335621 | 52.752 | 218 | 90 | 4 | 10 | 224 | 53 | 260 | 4.95e-71 | 223 |
| Msa0429900 | MtrunA17_Chr8g0335651 | 57.339 | 218 | 78 | 5 | 10 | 225 | 23 | 227 | 1.94e-64 | 205 |
| Msa0429900 | MtrunA17_Chr8g0335591 | 49.315 | 219 | 97 | 5 | 10 | 225 | 22 | 229 | 2.80e-61 | 197 |
| Msa0429900 | MtrunA17_Chr8g0335631 | 53.211 | 218 | 89 | 4 | 10 | 224 | 22 | 229 | 7.55e-61 | 196 |
| Msa0429900 | MtrunA17_Chr1g0199801 | 32.093 | 215 | 133 | 3 | 20 | 224 | 75 | 286 | 1.68e-30 | 117 |
| Msa0429900 | MtrunA17_Chr7g0259871 | 27.982 | 218 | 126 | 5 | 22 | 225 | 32 | 232 | 1.04e-23 | 97.4 |
| Msa0429900 | MtrunA17_Chr1g0185551 | 27.317 | 205 | 142 | 4 | 22 | 224 | 32 | 231 | 3.13e-23 | 96.3 |
| Msa0429900 | MtrunA17_Chr2g0292051 | 30.233 | 215 | 132 | 6 | 12 | 224 | 61 | 259 | 4.36e-17 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0429900 | AT2G26560.1 | 71.628 | 215 | 61 | 0 | 11 | 225 | 10 | 224 | 3.30e-110 | 322 |
| Msa0429900 | AT4G37070.2 | 66.667 | 213 | 71 | 0 | 12 | 224 | 11 | 223 | 3.87e-97 | 289 |
| Msa0429900 | AT4G37070.3 | 66.667 | 213 | 71 | 0 | 12 | 224 | 11 | 223 | 4.13e-97 | 288 |
| Msa0429900 | AT4G37070.1 | 66.667 | 213 | 71 | 0 | 12 | 224 | 11 | 223 | 4.13e-97 | 288 |
| Msa0429900 | AT4G37060.1 | 64.789 | 213 | 75 | 0 | 13 | 225 | 12 | 224 | 9.05e-95 | 283 |
| Msa0429900 | AT4G37070.4 | 62.911 | 213 | 68 | 1 | 12 | 224 | 11 | 212 | 4.46e-88 | 265 |
| Msa0429900 | AT4G37060.2 | 56.790 | 243 | 74 | 1 | 13 | 224 | 12 | 254 | 5.27e-88 | 267 |
| Msa0429900 | AT4G37050.1 | 61.818 | 220 | 76 | 2 | 13 | 224 | 28 | 247 | 3.64e-81 | 249 |
| Msa0429900 | AT5G43590.1 | 62.037 | 216 | 73 | 4 | 12 | 225 | 6 | 214 | 2.95e-76 | 236 |
| Msa0429900 | AT5G43590.2 | 62.037 | 216 | 73 | 4 | 12 | 225 | 73 | 281 | 1.37e-75 | 236 |
| Msa0429900 | AT3G54950.1 | 33.333 | 207 | 130 | 3 | 20 | 225 | 98 | 297 | 1.00e-31 | 121 |
| Msa0429900 | AT2G39220.1 | 33.816 | 207 | 130 | 5 | 20 | 224 | 108 | 309 | 1.73e-28 | 112 |
| Msa0429900 | AT3G63200.1 | 31.100 | 209 | 127 | 5 | 22 | 224 | 32 | 229 | 6.89e-28 | 109 |
| Msa0429900 | AT4G29800.2 | 29.864 | 221 | 133 | 6 | 20 | 225 | 121 | 334 | 1.25e-23 | 99.0 |
| Msa0429900 | AT4G29800.1 | 29.864 | 221 | 133 | 6 | 20 | 225 | 121 | 334 | 1.34e-23 | 98.6 |
Find 59 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGACAATGTTCCAAGTAAA+AGG | 0.173001 | 3_2:-81484492 | None:intergenic |
| GCATCGACGGTGGTGGTATT+AGG | 0.208767 | 3_2:+81484282 | Msa0429900:CDS |
| GCTGCTCCTACTTATCTTCC+TGG | 0.297373 | 3_2:+81484899 | Msa0429900:CDS |
| GTACGTTCCCTTCTGTATCT+TGG | 0.303550 | 3_2:-81484937 | None:intergenic |
| CATCGACGGTGGTGGTATTA+GGG | 0.320659 | 3_2:+81484283 | Msa0429900:CDS |
| AGGTATTTCCCATCGTATTT+TGG | 0.327115 | 3_2:-81484701 | None:intergenic |
| GAACTTATGCAGGCACTTGC+TGG | 0.336587 | 3_2:+81484643 | Msa0429900:intron |
| AGTGGACGTTGTTTATCATT+TGG | 0.339325 | 3_2:-81484446 | None:intergenic |
| GATTACTTTGATGTGATTAC+AGG | 0.344649 | 3_2:+81484383 | Msa0429900:CDS |
| ATTCTTGAAGTTGCGATTCA+AGG | 0.379087 | 3_2:-81484334 | None:intergenic |
| GTGTGGTTAGGGAGAAGCTT+GGG | 0.398981 | 3_2:+81484729 | Msa0429900:CDS |
| AAACGTGGGGATCACAATAT+TGG | 0.404692 | 3_2:-81484777 | None:intergenic |
| AATACCTACACAGTGTGGTT+AGG | 0.406721 | 3_2:+81484717 | Msa0429900:CDS |
| GAAATTGTTCAAATCATTAA+CGG | 0.431351 | 3_2:+81484676 | Msa0429900:CDS |
| TTATAAGATGAGAAAATGAT+TGG | 0.436649 | 3_2:-81484818 | None:intergenic |
| AACTTATGCAGGCACTTGCT+GGG | 0.440494 | 3_2:+81484644 | Msa0429900:intron |
| CAAATTCAGCCTCCCACCTA+TGG | 0.443188 | 3_2:+81484239 | Msa0429900:CDS |
| AAATTGTTCAAATCATTAAC+GGG | 0.445917 | 3_2:+81484677 | Msa0429900:CDS |
| CGTGAGTTCAACCTCATTGA+TGG | 0.454017 | 3_2:+81484959 | Msa0429900:CDS |
| CAGGCACTTGCTGGGACCGA+TGG | 0.460784 | 3_2:+81484652 | Msa0429900:intron |
| GGACAATGTTCCAAGTAAAA+GGG | 0.464623 | 3_2:-81484491 | None:intergenic |
| ATACCTACACAGTGTGGTTA+GGG | 0.485763 | 3_2:+81484718 | Msa0429900:CDS |
| AGGAACTCGAGAATAGTTGC+GGG | 0.498265 | 3_2:-81484314 | None:intergenic |
| AGGCACTTGCTGGGACCGAT+GGG | 0.500205 | 3_2:+81484653 | Msa0429900:intron |
| TTGTAACCAGGAAGATAAGT+AGG | 0.501497 | 3_2:-81484905 | None:intergenic |
| GTAAAAGGGCTTGATATCCT+TGG | 0.530283 | 3_2:-81484477 | None:intergenic |
| GATCAAGAATGCCCCTTGCA+TGG | 0.530743 | 3_2:+81484841 | Msa0429900:CDS |
| GTCACTAAGTTTCCATAGGT+GGG | 0.548697 | 3_2:-81484251 | None:intergenic |
| AGTCACTAAGTTTCCATAGG+TGG | 0.549310 | 3_2:-81484252 | None:intergenic |
| GATTTGAACAATTTCCCCAT+CGG | 0.558519 | 3_2:-81484668 | None:intergenic |
| AATAGTCACTAAGTTTCCAT+AGG | 0.559064 | 3_2:-81484255 | None:intergenic |
| GTGATTACAGGAACAAGTAC+AGG | 0.563901 | 3_2:+81484395 | Msa0429900:CDS |
| ATCGACGGTGGTGGTATTAG+GGG | 0.564683 | 3_2:+81484284 | Msa0429900:CDS |
| AAGATAAGTAGGAGCAGCAG+AGG | 0.572780 | 3_2:-81484894 | None:intergenic |
| GAGAGTCGAGCATCCATGCA+AGG | 0.575822 | 3_2:-81484854 | None:intergenic |
| TGGTGTTTGTGCAAATAATC+CGG | 0.582343 | 3_2:+81484982 | Msa0429900:CDS |
| AGAGTCGAGCATCCATGCAA+GGG | 0.586931 | 3_2:-81484853 | None:intergenic |
| AATTAGACGGTGAATCTGCT+AGG | 0.587927 | 3_2:+81484354 | Msa0429900:CDS |
| ATTCTAAGCATCGACGGTGG+TGG | 0.589977 | 3_2:+81484275 | Msa0429900:CDS |
| CACAAACACCACCATCAATG+AGG | 0.592240 | 3_2:-81484970 | None:intergenic |
| TTCAAGAACCAAGATACAGA+AGG | 0.598347 | 3_2:+81484929 | Msa0429900:CDS |
| ATCATTTGGAGCACTTAACA+TGG | 0.599256 | 3_2:-81484432 | None:intergenic |
| TAACGGGACCAAAATACGAT+GGG | 0.602205 | 3_2:+81484693 | Msa0429900:CDS |
| AAGGAACTCGAGAATAGTTG+CGG | 0.605964 | 3_2:-81484315 | None:intergenic |
| AGTGTGGTTAGGGAGAAGCT+TGG | 0.607976 | 3_2:+81484728 | Msa0429900:CDS |
| TGGTTCTTGAAGTTGTAACC+AGG | 0.626960 | 3_2:-81484917 | None:intergenic |
| TGTGGTTAGGGAGAAGCTTG+GGG | 0.637104 | 3_2:+81484730 | Msa0429900:CDS |
| TCAAGAACCAAGATACAGAA+GGG | 0.637936 | 3_2:+81484930 | Msa0429900:CDS |
| TTAACGGGACCAAAATACGA+TGG | 0.640656 | 3_2:+81484692 | Msa0429900:CDS |
| TCTCCCTAACCACACTGTGT+AGG | 0.645782 | 3_2:-81484721 | None:intergenic |
| GGCACTTGCTGGGACCGATG+GGG | 0.646532 | 3_2:+81484654 | Msa0429900:intron |
| TCGCAACTTCAAGAATTAGA+CGG | 0.655679 | 3_2:+81484341 | Msa0429900:CDS |
| GAGTCGAGCATCCATGCAAG+GGG | 0.668293 | 3_2:-81484852 | None:intergenic |
| GTGACTATTCTAAGCATCGA+CGG | 0.670875 | 3_2:+81484269 | Msa0429900:CDS |
| ACTAAGTTTCCATAGGTGGG+AGG | 0.690895 | 3_2:-81484248 | None:intergenic |
| ATTACAGGAACAAGTACAGG+TGG | 0.697018 | 3_2:+81484398 | Msa0429900:CDS |
| GAGTTCAACCTCATTGATGG+TGG | 0.718974 | 3_2:+81484962 | Msa0429900:CDS |
| TGGGAAATACCTACACAGTG+TGG | 0.740267 | 3_2:+81484712 | Msa0429900:CDS |
| ACTATTCTAAGCATCGACGG+TGG | 0.761071 | 3_2:+81484272 | Msa0429900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTGTTCAAATCATTAA+CGG | + | chr3_2:81484676-81484695 | Msa0429900:CDS | 20.0% |
| !! | AAATTGTTCAAATCATTAAC+GGG | + | chr3_2:81484677-81484696 | Msa0429900:CDS | 20.0% |
| !! | TTATAAGATGAGAAAATGAT+TGG | - | chr3_2:81484821-81484840 | None:intergenic | 20.0% |
| !! | GAAATTGTTCAAATCATTAA+CGG | + | chr3_2:81484676-81484695 | Msa0429900:CDS | 20.0% |
| !! | AAATTGTTCAAATCATTAAC+GGG | + | chr3_2:81484677-81484696 | Msa0429900:CDS | 20.0% |
| !! | TTATAAGATGAGAAAATGAT+TGG | - | chr3_2:81484821-81484840 | None:intergenic | 20.0% |
| ! | GTTATTCAATGAACTTAATG+TGG | - | chr3_2:81484587-81484606 | None:intergenic | 25.0% |
| ! | GTTATTCAATGAACTTAATG+TGG | - | chr3_2:81484587-81484606 | None:intergenic | 25.0% |
| AATAGTCACTAAGTTTCCAT+AGG | - | chr3_2:81484258-81484277 | None:intergenic | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | + | chr3_2:81484383-81484402 | Msa0429900:CDS | 30.0% | |
| !! | TTTTGTTGTGGGAAAATCTT+TGG | - | chr3_2:81484515-81484534 | None:intergenic | 30.0% |
| !! | TGTATACGTACTTTTGTTGT+GGG | - | chr3_2:81484526-81484545 | None:intergenic | 30.0% |
| ! | ATGTATACGTACTTTTGTTG+TGG | - | chr3_2:81484527-81484546 | None:intergenic | 30.0% |
| !! | ATGTTTTTATGTCAAACGTG+GGG | - | chr3_2:81484793-81484812 | None:intergenic | 30.0% |
| !! | GATGTTTTTATGTCAAACGT+GGG | - | chr3_2:81484794-81484813 | None:intergenic | 30.0% |
| AATAGTCACTAAGTTTCCAT+AGG | - | chr3_2:81484258-81484277 | None:intergenic | 30.0% | |
| GATTACTTTGATGTGATTAC+AGG | + | chr3_2:81484383-81484402 | Msa0429900:CDS | 30.0% | |
| !! | TTTTGTTGTGGGAAAATCTT+TGG | - | chr3_2:81484515-81484534 | None:intergenic | 30.0% |
| !! | TGTATACGTACTTTTGTTGT+GGG | - | chr3_2:81484526-81484545 | None:intergenic | 30.0% |
| ! | ATGTATACGTACTTTTGTTG+TGG | - | chr3_2:81484527-81484546 | None:intergenic | 30.0% |
| !! | ATGTTTTTATGTCAAACGTG+GGG | - | chr3_2:81484793-81484812 | None:intergenic | 30.0% |
| !! | GATGTTTTTATGTCAAACGT+GGG | - | chr3_2:81484794-81484813 | None:intergenic | 30.0% |
| ATTCTTGAAGTTGCGATTCA+AGG | - | chr3_2:81484337-81484356 | None:intergenic | 35.0% | |
| TCGCAACTTCAAGAATTAGA+CGG | + | chr3_2:81484341-81484360 | Msa0429900:CDS | 35.0% | |
| ! | ATCATTTGGAGCACTTAACA+TGG | - | chr3_2:81484435-81484454 | None:intergenic | 35.0% |
| AGTGGACGTTGTTTATCATT+TGG | - | chr3_2:81484449-81484468 | None:intergenic | 35.0% | |
| GGACAATGTTCCAAGTAAAA+GGG | - | chr3_2:81484494-81484513 | None:intergenic | 35.0% | |
| TGGACAATGTTCCAAGTAAA+AGG | - | chr3_2:81484495-81484514 | None:intergenic | 35.0% | |
| ATTAACGGTTGAACTTATGC+AGG | + | chr3_2:81484633-81484652 | Msa0429900:intron | 35.0% | |
| GATTTGAACAATTTCCCCAT+CGG | - | chr3_2:81484671-81484690 | None:intergenic | 35.0% | |
| ! | AGGTATTTCCCATCGTATTT+TGG | - | chr3_2:81484704-81484723 | None:intergenic | 35.0% |
| !! | CGATGTTTTTATGTCAAACG+TGG | - | chr3_2:81484795-81484814 | None:intergenic | 35.0% |
| TTGTAACCAGGAAGATAAGT+AGG | - | chr3_2:81484908-81484927 | None:intergenic | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | + | chr3_2:81484929-81484948 | Msa0429900:CDS | 35.0% | |
| TCAAGAACCAAGATACAGAA+GGG | + | chr3_2:81484930-81484949 | Msa0429900:CDS | 35.0% | |
| TGGTGTTTGTGCAAATAATC+CGG | + | chr3_2:81484982-81485001 | Msa0429900:CDS | 35.0% | |
| ATTCTTGAAGTTGCGATTCA+AGG | - | chr3_2:81484337-81484356 | None:intergenic | 35.0% | |
| TCGCAACTTCAAGAATTAGA+CGG | + | chr3_2:81484341-81484360 | Msa0429900:CDS | 35.0% | |
| ! | ATCATTTGGAGCACTTAACA+TGG | - | chr3_2:81484435-81484454 | None:intergenic | 35.0% |
| AGTGGACGTTGTTTATCATT+TGG | - | chr3_2:81484449-81484468 | None:intergenic | 35.0% | |
| GGACAATGTTCCAAGTAAAA+GGG | - | chr3_2:81484494-81484513 | None:intergenic | 35.0% | |
| TGGACAATGTTCCAAGTAAA+AGG | - | chr3_2:81484495-81484514 | None:intergenic | 35.0% | |
| ATTAACGGTTGAACTTATGC+AGG | + | chr3_2:81484633-81484652 | Msa0429900:intron | 35.0% | |
| GATTTGAACAATTTCCCCAT+CGG | - | chr3_2:81484671-81484690 | None:intergenic | 35.0% | |
| ! | AGGTATTTCCCATCGTATTT+TGG | - | chr3_2:81484704-81484723 | None:intergenic | 35.0% |
| !! | CGATGTTTTTATGTCAAACG+TGG | - | chr3_2:81484795-81484814 | None:intergenic | 35.0% |
| TTGTAACCAGGAAGATAAGT+AGG | - | chr3_2:81484908-81484927 | None:intergenic | 35.0% | |
| TTCAAGAACCAAGATACAGA+AGG | + | chr3_2:81484929-81484948 | Msa0429900:CDS | 35.0% | |
| TCAAGAACCAAGATACAGAA+GGG | + | chr3_2:81484930-81484949 | Msa0429900:CDS | 35.0% | |
| TGGTGTTTGTGCAAATAATC+CGG | + | chr3_2:81484982-81485001 | Msa0429900:CDS | 35.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | - | chr3_2:81484254-81484273 | None:intergenic | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | - | chr3_2:81484255-81484274 | None:intergenic | 40.0% | |
| !! | GTGACTATTCTAAGCATCGA+CGG | + | chr3_2:81484269-81484288 | Msa0429900:CDS | 40.0% |
| AAGGAACTCGAGAATAGTTG+CGG | - | chr3_2:81484318-81484337 | None:intergenic | 40.0% | |
| AATTAGACGGTGAATCTGCT+AGG | + | chr3_2:81484354-81484373 | Msa0429900:CDS | 40.0% | |
| GTGATTACAGGAACAAGTAC+AGG | + | chr3_2:81484395-81484414 | Msa0429900:CDS | 40.0% | |
| ATTACAGGAACAAGTACAGG+TGG | + | chr3_2:81484398-81484417 | Msa0429900:CDS | 40.0% | |
| ATATCCTTGGCAGCAAAAAG+TGG | - | chr3_2:81484467-81484486 | None:intergenic | 40.0% | |
| GTAAAAGGGCTTGATATCCT+TGG | - | chr3_2:81484480-81484499 | None:intergenic | 40.0% | |
| ! | GGATATCAAGCCCTTTTACT+TGG | + | chr3_2:81484481-81484500 | Msa0429900:CDS | 40.0% |
| TGTGGCTACATAAGTGCAAT+TGG | - | chr3_2:81484569-81484588 | None:intergenic | 40.0% | |
| TTAACGGGACCAAAATACGA+TGG | + | chr3_2:81484692-81484711 | Msa0429900:CDS | 40.0% | |
| TAACGGGACCAAAATACGAT+GGG | + | chr3_2:81484693-81484712 | Msa0429900:CDS | 40.0% | |
| AATACCTACACAGTGTGGTT+AGG | + | chr3_2:81484717-81484736 | Msa0429900:CDS | 40.0% | |
| ATACCTACACAGTGTGGTTA+GGG | + | chr3_2:81484718-81484737 | Msa0429900:CDS | 40.0% | |
| AAACGTGGGGATCACAATAT+TGG | - | chr3_2:81484780-81484799 | None:intergenic | 40.0% | |
| TGGTTCTTGAAGTTGTAACC+AGG | - | chr3_2:81484920-81484939 | None:intergenic | 40.0% | |
| GTCACTAAGTTTCCATAGGT+GGG | - | chr3_2:81484254-81484273 | None:intergenic | 40.0% | |
| AGTCACTAAGTTTCCATAGG+TGG | - | chr3_2:81484255-81484274 | None:intergenic | 40.0% | |
| !! | GTGACTATTCTAAGCATCGA+CGG | + | chr3_2:81484269-81484288 | Msa0429900:CDS | 40.0% |
| AAGGAACTCGAGAATAGTTG+CGG | - | chr3_2:81484318-81484337 | None:intergenic | 40.0% | |
| AATTAGACGGTGAATCTGCT+AGG | + | chr3_2:81484354-81484373 | Msa0429900:CDS | 40.0% | |
| GTGATTACAGGAACAAGTAC+AGG | + | chr3_2:81484395-81484414 | Msa0429900:CDS | 40.0% | |
| ATTACAGGAACAAGTACAGG+TGG | + | chr3_2:81484398-81484417 | Msa0429900:CDS | 40.0% | |
| ATATCCTTGGCAGCAAAAAG+TGG | - | chr3_2:81484467-81484486 | None:intergenic | 40.0% | |
| GTAAAAGGGCTTGATATCCT+TGG | - | chr3_2:81484480-81484499 | None:intergenic | 40.0% | |
| ! | GGATATCAAGCCCTTTTACT+TGG | + | chr3_2:81484481-81484500 | Msa0429900:CDS | 40.0% |
| TGTGGCTACATAAGTGCAAT+TGG | - | chr3_2:81484569-81484588 | None:intergenic | 40.0% | |
| TTAACGGGACCAAAATACGA+TGG | + | chr3_2:81484692-81484711 | Msa0429900:CDS | 40.0% | |
| TAACGGGACCAAAATACGAT+GGG | + | chr3_2:81484693-81484712 | Msa0429900:CDS | 40.0% | |
| AATACCTACACAGTGTGGTT+AGG | + | chr3_2:81484717-81484736 | Msa0429900:CDS | 40.0% | |
| ATACCTACACAGTGTGGTTA+GGG | + | chr3_2:81484718-81484737 | Msa0429900:CDS | 40.0% | |
| AAACGTGGGGATCACAATAT+TGG | - | chr3_2:81484780-81484799 | None:intergenic | 40.0% | |
| TGGTTCTTGAAGTTGTAACC+AGG | - | chr3_2:81484920-81484939 | None:intergenic | 40.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | - | chr3_2:81484251-81484270 | None:intergenic | 45.0% | |
| !! | ACTATTCTAAGCATCGACGG+TGG | + | chr3_2:81484272-81484291 | Msa0429900:CDS | 45.0% |
| AGGAACTCGAGAATAGTTGC+GGG | - | chr3_2:81484317-81484336 | None:intergenic | 45.0% | |
| AACTTATGCAGGCACTTGCT+GGG | + | chr3_2:81484644-81484663 | Msa0429900:intron | 45.0% | |
| TGGGAAATACCTACACAGTG+TGG | + | chr3_2:81484712-81484731 | Msa0429900:CDS | 45.0% | |
| AAGATAAGTAGGAGCAGCAG+AGG | - | chr3_2:81484897-81484916 | None:intergenic | 45.0% | |
| GTACGTTCCCTTCTGTATCT+TGG | - | chr3_2:81484940-81484959 | None:intergenic | 45.0% | |
| CGTGAGTTCAACCTCATTGA+TGG | + | chr3_2:81484959-81484978 | Msa0429900:CDS | 45.0% | |
| GAGTTCAACCTCATTGATGG+TGG | + | chr3_2:81484962-81484981 | Msa0429900:CDS | 45.0% | |
| CACAAACACCACCATCAATG+AGG | - | chr3_2:81484973-81484992 | None:intergenic | 45.0% | |
| ACTAAGTTTCCATAGGTGGG+AGG | - | chr3_2:81484251-81484270 | None:intergenic | 45.0% | |
| !! | ACTATTCTAAGCATCGACGG+TGG | + | chr3_2:81484272-81484291 | Msa0429900:CDS | 45.0% |
| AGGAACTCGAGAATAGTTGC+GGG | - | chr3_2:81484317-81484336 | None:intergenic | 45.0% | |
| AACTTATGCAGGCACTTGCT+GGG | + | chr3_2:81484644-81484663 | Msa0429900:intron | 45.0% | |
| TGGGAAATACCTACACAGTG+TGG | + | chr3_2:81484712-81484731 | Msa0429900:CDS | 45.0% | |
| AAGATAAGTAGGAGCAGCAG+AGG | - | chr3_2:81484897-81484916 | None:intergenic | 45.0% | |
| GTACGTTCCCTTCTGTATCT+TGG | - | chr3_2:81484940-81484959 | None:intergenic | 45.0% | |
| CGTGAGTTCAACCTCATTGA+TGG | + | chr3_2:81484959-81484978 | Msa0429900:CDS | 45.0% | |
| GAGTTCAACCTCATTGATGG+TGG | + | chr3_2:81484962-81484981 | Msa0429900:CDS | 45.0% | |
| CACAAACACCACCATCAATG+AGG | - | chr3_2:81484973-81484992 | None:intergenic | 45.0% | |
| !!! | ATAAATATAATTTGTATTAA+CGG | + | chr3_2:81484618-81484637 | Msa0429900:intron | 5.0% |
| !!! | ATAAATATAATTTGTATTAA+CGG | + | chr3_2:81484618-81484637 | Msa0429900:intron | 5.0% |
| CAAATTCAGCCTCCCACCTA+TGG | + | chr3_2:81484239-81484258 | Msa0429900:CDS | 50.0% | |
| !! | ATTCTAAGCATCGACGGTGG+TGG | + | chr3_2:81484275-81484294 | Msa0429900:CDS | 50.0% |
| ! | CATCGACGGTGGTGGTATTA+GGG | + | chr3_2:81484283-81484302 | Msa0429900:CDS | 50.0% |
| ! | ATCGACGGTGGTGGTATTAG+GGG | + | chr3_2:81484284-81484303 | Msa0429900:CDS | 50.0% |
| !!! | ACGTCCACTTTTTGCTGCCA+AGG | + | chr3_2:81484460-81484479 | Msa0429900:CDS | 50.0% |
| GAACTTATGCAGGCACTTGC+TGG | + | chr3_2:81484643-81484662 | Msa0429900:intron | 50.0% | |
| TCTCCCTAACCACACTGTGT+AGG | - | chr3_2:81484724-81484743 | None:intergenic | 50.0% | |
| AGTGTGGTTAGGGAGAAGCT+TGG | + | chr3_2:81484728-81484747 | Msa0429900:CDS | 50.0% | |
| GTGTGGTTAGGGAGAAGCTT+GGG | + | chr3_2:81484729-81484748 | Msa0429900:CDS | 50.0% | |
| TGTGGTTAGGGAGAAGCTTG+GGG | + | chr3_2:81484730-81484749 | Msa0429900:CDS | 50.0% | |
| GATCAAGAATGCCCCTTGCA+TGG | + | chr3_2:81484841-81484860 | Msa0429900:CDS | 50.0% | |
| AGAGTCGAGCATCCATGCAA+GGG | - | chr3_2:81484856-81484875 | None:intergenic | 50.0% | |
| GCTGCTCCTACTTATCTTCC+TGG | + | chr3_2:81484899-81484918 | Msa0429900:CDS | 50.0% | |
| CAAATTCAGCCTCCCACCTA+TGG | + | chr3_2:81484239-81484258 | Msa0429900:CDS | 50.0% | |
| !! | ATTCTAAGCATCGACGGTGG+TGG | + | chr3_2:81484275-81484294 | Msa0429900:CDS | 50.0% |
| ! | CATCGACGGTGGTGGTATTA+GGG | + | chr3_2:81484283-81484302 | Msa0429900:CDS | 50.0% |
| ! | ATCGACGGTGGTGGTATTAG+GGG | + | chr3_2:81484284-81484303 | Msa0429900:CDS | 50.0% |
| !!! | ACGTCCACTTTTTGCTGCCA+AGG | + | chr3_2:81484460-81484479 | Msa0429900:CDS | 50.0% |
| GAACTTATGCAGGCACTTGC+TGG | + | chr3_2:81484643-81484662 | Msa0429900:intron | 50.0% | |
| TCTCCCTAACCACACTGTGT+AGG | - | chr3_2:81484724-81484743 | None:intergenic | 50.0% | |
| AGTGTGGTTAGGGAGAAGCT+TGG | + | chr3_2:81484728-81484747 | Msa0429900:CDS | 50.0% | |
| GTGTGGTTAGGGAGAAGCTT+GGG | + | chr3_2:81484729-81484748 | Msa0429900:CDS | 50.0% | |
| TGTGGTTAGGGAGAAGCTTG+GGG | + | chr3_2:81484730-81484749 | Msa0429900:CDS | 50.0% | |
| GATCAAGAATGCCCCTTGCA+TGG | + | chr3_2:81484841-81484860 | Msa0429900:CDS | 50.0% | |
| AGAGTCGAGCATCCATGCAA+GGG | - | chr3_2:81484856-81484875 | None:intergenic | 50.0% | |
| GCTGCTCCTACTTATCTTCC+TGG | + | chr3_2:81484899-81484918 | Msa0429900:CDS | 50.0% | |
| ! | GCATCGACGGTGGTGGTATT+AGG | + | chr3_2:81484282-81484301 | Msa0429900:CDS | 55.0% |
| GAGTCGAGCATCCATGCAAG+GGG | - | chr3_2:81484855-81484874 | None:intergenic | 55.0% | |
| GAGAGTCGAGCATCCATGCA+AGG | - | chr3_2:81484857-81484876 | None:intergenic | 55.0% | |
| ! | GCATCGACGGTGGTGGTATT+AGG | + | chr3_2:81484282-81484301 | Msa0429900:CDS | 55.0% |
| GAGTCGAGCATCCATGCAAG+GGG | - | chr3_2:81484855-81484874 | None:intergenic | 55.0% | |
| GAGAGTCGAGCATCCATGCA+AGG | - | chr3_2:81484857-81484876 | None:intergenic | 55.0% | |
| ! | AGGCACTTGCTGGGACCGAT+GGG | + | chr3_2:81484653-81484672 | Msa0429900:intron | 60.0% |
| ! | AGGCACTTGCTGGGACCGAT+GGG | + | chr3_2:81484653-81484672 | Msa0429900:intron | 60.0% |
| ! | CAGGCACTTGCTGGGACCGA+TGG | + | chr3_2:81484652-81484671 | Msa0429900:intron | 65.0% |
| ! | GGCACTTGCTGGGACCGATG+GGG | + | chr3_2:81484654-81484673 | Msa0429900:intron | 65.0% |
| ! | CAGGCACTTGCTGGGACCGA+TGG | + | chr3_2:81484652-81484671 | Msa0429900:intron | 65.0% |
| ! | GGCACTTGCTGGGACCGATG+GGG | + | chr3_2:81484654-81484673 | Msa0429900:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 81484212 | 81485012 | 81484212 | ID=Msa0429900;Name=Msa0429900 |
| chr3_2 | mRNA | 81484212 | 81485012 | 81484212 | ID=Msa0429900-mRNA-1;Parent=Msa0429900;Name=Msa0429900-mRNA-1;_AED=0.39;_eAED=0.39;_QI=0|1|0|1|1|1|2|0|226 |
| chr3_2 | exon | 81484212 | 81484534 | 81484212 | ID=Msa0429900-mRNA-1:exon:22542;Parent=Msa0429900-mRNA-1 |
| chr3_2 | exon | 81484655 | 81485012 | 81484655 | ID=Msa0429900-mRNA-1:exon:22543;Parent=Msa0429900-mRNA-1 |
| chr3_2 | CDS | 81484212 | 81484534 | 81484212 | ID=Msa0429900-mRNA-1:cds;Parent=Msa0429900-mRNA-1 |
| chr3_2 | CDS | 81484655 | 81485012 | 81484655 | ID=Msa0429900-mRNA-1:cds;Parent=Msa0429900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
