AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0026420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026420 MtrunA17_Chr1g0153781 98.561 417 6 0 1 417 1 417 0.0 852
Msa0026420 MtrunA17_Chr3g0133691 78.164 403 86 2 5 407 4 404 0.0 643
Msa0026420 MtrunA17_Chr3g0133681 76.427 403 93 2 5 407 4 404 0.0 633
Msa0026420 MtrunA17_Chr5g0402441 57.560 377 155 3 19 394 14 386 1.04e-158 453
Msa0026420 MtrunA17_Chr5g0402451 55.076 394 170 4 9 400 1 389 1.57e-158 452
Msa0026420 MtrunA17_Chr8g0335581 43.237 414 195 13 11 410 11 398 3.01e-100 304
Msa0026420 MtrunA17_Chr8g0335651 46.329 395 174 8 10 399 22 383 1.20e-94 290
Msa0026420 MtrunA17_Chr8g0335611 42.569 397 199 11 11 399 22 397 9.45e-94 288
Msa0026420 MtrunA17_Chr8g0335621 42.065 397 201 11 11 399 53 428 3.15e-92 285
Msa0026420 MtrunA17_Chr8g0335631 42.998 407 201 11 11 410 22 404 2.94e-88 274
Msa0026420 MtrunA17_Chr8g0335591 40.441 408 212 11 10 409 21 405 4.69e-85 266
Msa0026420 MtrunA17_Chr1g0199801 28.501 407 253 14 21 412 75 458 2.70e-37 141
Msa0026420 MtrunA17_Chr7g0259871 28.736 261 147 9 23 269 32 267 3.70e-25 105
Msa0026420 MtrunA17_Chr1g0185551 25.513 341 217 12 23 358 32 340 4.81e-25 105
Msa0026420 MtrunA17_Chr2g0292051 27.190 331 189 12 6 330 54 338 1.46e-20 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0026420 AT2G26560.1 66.329 395 128 4 12 405 10 400 0.0 527
Msa0026420 AT4G37070.2 59.591 391 156 2 13 403 11 399 5.19e-169 480
Msa0026420 AT4G37050.1 60.804 398 148 2 14 404 28 424 3.20e-168 478
Msa0026420 AT4G37060.1 57.468 395 166 2 14 408 12 404 9.62e-165 469
Msa0026420 AT4G37070.3 59.200 375 151 2 13 387 11 383 1.58e-160 457
Msa0026420 AT4G37070.1 59.200 375 151 2 13 387 11 383 1.58e-160 457
Msa0026420 AT4G37060.2 53.286 426 166 3 14 408 12 435 3.72e-158 454
Msa0026420 AT4G37070.4 57.600 375 146 3 13 387 11 372 1.89e-152 436
Msa0026420 AT5G43590.1 53.077 390 172 4 13 399 6 387 7.94e-130 380
Msa0026420 AT5G43590.2 53.077 390 172 4 13 399 73 454 5.75e-129 380
Msa0026420 AT3G54950.1 27.569 399 258 11 21 414 98 470 1.42e-35 137
Msa0026420 AT4G29800.1 28.256 407 255 14 21 412 121 505 1.92e-35 137
Msa0026420 AT4G29800.2 28.186 408 255 14 21 412 121 506 2.80e-35 137
Msa0026420 AT2G39220.1 29.639 388 243 15 21 402 108 471 1.75e-34 134
Msa0026420 AT3G63200.1 28.707 317 192 10 23 333 32 320 1.12e-30 122

Find 90 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTATGGTTTATATATTTC+AGG 0.196146 1_1:-50282592 None:intergenic
AGGGCAATGTTCAAGGTAAA+AGG 0.209370 1_1:-50283771 None:intergenic
TTAATAAATTCTCACCAATT+TGG 0.220880 1_1:-50285873 None:intergenic
TGATAATTACCTTCGAATTC+AGG 0.242193 1_1:+50285633 Msa0026420:CDS
CTGCTTTGTTACTTCATTCA+TGG 0.276097 1_1:-50285362 None:intergenic
TCCAGAGTCAATTTAGAAAA+TGG 0.281008 1_1:+50285907 Msa0026420:CDS
TTGAAGAAACTATGCCAAAT+TGG 0.298509 1_1:+50285859 Msa0026420:CDS
GTAAAAGGGCTTGATATCTT+TGG 0.318803 1_1:-50283756 None:intergenic
GCTTCAGAGATCCCCTTGTT+TGG 0.326246 1_1:+50284523 Msa0026420:intron
TACTCAATCAAGTGGTGATA+TGG 0.328294 1_1:+50285567 Msa0026420:CDS
CCATATTCCAGAGGCTTGAT+TGG 0.331569 1_1:-50285412 None:intergenic
CCAATCAAGCCTCTGGAATA+TGG 0.340675 1_1:+50285412 Msa0026420:CDS
GTAACCATTCTTAGTATTGA+TGG 0.353477 1_1:+50282752 Msa0026420:CDS
ATTCCTTGAATCTCACCTTC+AGG 0.368436 1_1:+50282814 Msa0026420:CDS
CCAAATGGGGATTATTAGAT+TGG 0.382105 1_1:+50285506 Msa0026420:CDS
TGCACAAATGGCAGCCAAAT+GGG 0.384292 1_1:+50285492 Msa0026420:CDS
AACAAAGGCTGTATAGAGTA+TGG 0.387465 1_1:-50282607 None:intergenic
TTGGTTTCTCCGGTTGTTAG+TGG 0.394804 1_1:-50285940 None:intergenic
TTTCTTTCCAATCAAGCCTC+TGG 0.407655 1_1:+50285405 Msa0026420:CDS
CCAATCTAATAATCCCCATT+TGG 0.412692 1_1:-50285506 None:intergenic
TGAGAATTTATTAAAGAAAC+CGG 0.414005 1_1:+50285882 Msa0026420:CDS
AGCATCTTCATTGGTTTCTC+CGG 0.415887 1_1:-50285950 None:intergenic
GGCTTGATTGGAAAGAAATC+AGG 0.418966 1_1:-50285400 None:intergenic
CTGATCATTTCAATAGGCAC+TGG 0.431825 1_1:+50285442 Msa0026420:CDS
TCTTGCCTCTACTTGTGTGT+GGG 0.432968 1_1:-50286141 None:intergenic
CCTCTTGAGAGCATCTTCAT+TGG 0.439200 1_1:-50285959 None:intergenic
ATATTAATTACCTATGTTGT+GGG 0.443069 1_1:-50283802 None:intergenic
GCAAAGGTAATGAGATCTCT+TGG 0.450334 1_1:+50283981 Msa0026420:CDS
CTGCACAAATGGCAGCCAAA+TGG 0.451475 1_1:+50285491 Msa0026420:CDS
AGTATGGTTTATATATTTCA+GGG 0.460216 1_1:-50282591 None:intergenic
ACAAATAAAGATCAGGAAGC+TGG 0.460216 1_1:+50284614 Msa0026420:CDS
AGGAATTCAATAATTGCAGC+AGG 0.463149 1_1:-50282797 None:intergenic
GGGCAATGTTCAAGGTAAAA+GGG 0.470464 1_1:-50283770 None:intergenic
TAACCATTCTTAGTATTGAT+GGG 0.470961 1_1:+50282753 Msa0026420:CDS
GAGGAGTTCAATCTCATTGA+TGG 0.474688 1_1:+50284644 Msa0026420:CDS
GATTACTTTGATGTGATCTC+AGG 0.483035 1_1:+50283662 Msa0026420:CDS
CTTGGAGGACCCAAATATGA+TGG 0.485178 1_1:+50283999 Msa0026420:CDS
TATATTAATTACCTATGTTG+TGG 0.490009 1_1:-50283803 None:intergenic
CAAGTTGTTAGAGAGAAACT+TGG 0.490786 1_1:+50284035 Msa0026420:CDS
TTATTTGTGAAGTTGTGAGC+AGG 0.494731 1_1:-50284599 None:intergenic
TTGTGAGCAGGGAGATAAGT+AGG 0.496729 1_1:-50284587 None:intergenic
CAAGTAGAGGCAAGAAAGCC+CGG 0.498544 1_1:+50286149 Msa0026420:CDS
CAATAATTGCAGCAGGGATG+AGG 0.499347 1_1:-50282790 None:intergenic
GGAGAGGTTCACTGCACAAA+TGG 0.505314 1_1:+50285480 Msa0026420:CDS
CAACTTCACAAATAAAGATC+AGG 0.505940 1_1:+50284607 Msa0026420:CDS
TTCTTGCCTCTACTTGTGTG+TGG 0.506302 1_1:-50286142 None:intergenic
TCTCTCTAACAACTTGATGA+AGG 0.508522 1_1:-50284028 None:intergenic
TCTAAATTGACTCTGGAGAC+CGG 0.508962 1_1:-50285901 None:intergenic
TGATAAGATGAGAAAATGAT+TGG 0.523309 1_1:-50284125 None:intergenic
ATACCTGAAGGTGAGATTCA+AGG 0.523660 1_1:-50282817 None:intergenic
GAAATTACATAAAATTTCGA+TGG 0.526047 1_1:+50282673 Msa0026420:exon
TTACCAAGTTCCCATAAGTA+GGG 0.536098 1_1:-50282733 None:intergenic
GTTACCAAGTTCCCATAAGT+AGG 0.539081 1_1:-50282734 None:intergenic
GTGATCTCAGGAACAAGTAC+AGG 0.541512 1_1:+50283674 Msa0026420:CDS
ATGCAGGATGATACATTGAC+AGG 0.541552 1_1:+50285799 Msa0026420:intron
ATTACATAAAATTTCGATGG+AGG 0.541674 1_1:+50282676 Msa0026420:exon
TGAATCATGAAACTAGATGC+CGG 0.546406 1_1:-50286168 None:intergenic
TTACATAAAATTTCGATGGA+GGG 0.558119 1_1:+50282677 Msa0026420:exon
ATCTGTGTGTAGGAGTTGGA+TGG 0.559288 1_1:+50283620 Msa0026420:intron
GAATCATGAAACTAGATGCC+GGG 0.560416 1_1:-50286167 None:intergenic
TTAGATTGGCTAACACATAG+TGG 0.560851 1_1:+50285520 Msa0026420:CDS
TGATCATTTCAATAGGCACT+GGG 0.562419 1_1:+50285443 Msa0026420:CDS
TATTTGTGAAGTTGTGAGCA+GGG 0.563364 1_1:-50284598 None:intergenic
CTTGCCTCTACTTGTGTGTG+GGG 0.564230 1_1:-50286140 None:intergenic
AACCATTCTTAGTATTGATG+GGG 0.567798 1_1:+50282754 Msa0026420:CDS
CAAAGTCTTGATGTCAAATG+TGG 0.569923 1_1:-50284099 None:intergenic
TGGTGTTTGTGCAAATAATC+CGG 0.582343 1_1:+50284667 Msa0026420:CDS
TTTATCTGGAGCAGCTAACA+TGG 0.585474 1_1:-50283711 None:intergenic
TTCAGTAGACATTGCAACGG+AGG 0.586597 1_1:+50285831 Msa0026420:CDS
GAAAGTTTAGCATCCAAACA+AGG 0.590523 1_1:-50284536 None:intergenic
TCAGGAAGCTGGAAAAGAAG+AGG 0.603502 1_1:+50284625 Msa0026420:CDS
CCAATGAAGATGCTCTCAAG+AGG 0.607291 1_1:+50285959 Msa0026420:CDS
AAAGTTTAGCATCCAAACAA+GGG 0.615469 1_1:-50284535 None:intergenic
AGATCCCCACACACAAGTAG+AGG 0.617675 1_1:+50286136 Msa0026420:CDS
AGTTGGATGGTGAAGATGCA+AGG 0.618716 1_1:+50283633 Msa0026420:CDS
GCACAAATGGCAGCCAAATG+GGG 0.620024 1_1:+50285493 Msa0026420:CDS
TTCTTCAGTAGACATTGCAA+CGG 0.624403 1_1:+50285828 Msa0026420:CDS
AAGGTAATGAGATCTCTTGG+AGG 0.632690 1_1:+50283984 Msa0026420:CDS
TACCAAGTTCCCATAAGTAG+GGG 0.646419 1_1:-50282732 None:intergenic
ATCTCAGGAACAAGTACAGG+AGG 0.646501 1_1:+50283677 Msa0026420:CDS
ACCATTCTTAGTATTGATGG+GGG 0.646720 1_1:+50282755 Msa0026420:CDS
TGGTGCGACACTATTAGCAA+AGG 0.647189 1_1:+50283965 Msa0026420:CDS
GGAATTCAATAATTGCAGCA+GGG 0.658810 1_1:-50282796 None:intergenic
GAGTTCAATCTCATTGATGG+TGG 0.662016 1_1:+50284647 Msa0026420:CDS
AAATGTGGGAACAACAATGT+TGG 0.662239 1_1:-50284084 None:intergenic
AAGTTTAGCATCCAAACAAG+GGG 0.668793 1_1:-50284534 None:intergenic
ACCAAGTTCCCATAAGTAGG+GGG 0.679072 1_1:-50282731 None:intergenic
AAAGTCTTGATGTCAAATGT+GGG 0.692840 1_1:-50284098 None:intergenic
TAATGGTGTGATGAAAACAA+AGG 0.706401 1_1:-50282622 None:intergenic
AGAAAACGACCATATTCCAG+AGG 0.710413 1_1:-50285421 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTTTTTTTATATATAA+TGG + chr1_1:50284180-50284199 Msa0026420:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTTA+TGG + chr1_1:50285671-50285690 Msa0026420:intron 0.0%
!!! TTTTTTTGAGTAAATATTAA+TGG - chr1_1:50282642-50282661 None:intergenic 10.0%
!! TTCAAATAATAAAGTAATAT+TGG - chr1_1:50283579-50283598 None:intergenic 10.0%
!!! TCTAAAAAATAAGTTTTTAT+TGG + chr1_1:50283921-50283940 Msa0026420:intron 10.0%
!! GACAAAATATATAATTTATT+TGG - chr1_1:50284430-50284449 None:intergenic 10.0%
!!! ATAAAACATTTTATAATACA+TGG - chr1_1:50286353-50286372 None:intergenic 10.0%
!!! TCATTTTATCTATATGTTTT+AGG - chr1_1:50283298-50283317 None:intergenic 15.0%
!!! TAATTTATGTTTATTTTTCG+TGG - chr1_1:50283392-50283411 None:intergenic 15.0%
!! TAAATTAATTAGTTGTTGAT+TGG + chr1_1:50284711-50284730 Msa0026420:intron 15.0%
!! TTGTTTATTTATATATTCGT+TGG - chr1_1:50284793-50284812 None:intergenic 15.0%
!!! TTTTTTTTTTTTATGGTAGT+AGG + chr1_1:50285678-50285697 Msa0026420:intron 15.0%
!! TGATGTACAATATATATTAA+TGG - chr1_1:50285732-50285751 None:intergenic 15.0%
!! AGTATGGTTTATATATTTCA+GGG - chr1_1:50282594-50282613 None:intergenic 20.0%
!! GAAATTACATAAAATTTCGA+TGG + chr1_1:50282673-50282692 Msa0026420:exon 20.0%
!! CATATATATAATATACCTGA+AGG - chr1_1:50282832-50282851 None:intergenic 20.0%
!!! TTGTTTTCTTTTTGCATAAA+TGG + chr1_1:50282948-50282967 Msa0026420:intron 20.0%
!!! GAAAGTTTTTATATGTAAGT+TGG + chr1_1:50283058-50283077 Msa0026420:intron 20.0%
!! ATTTATTATGCAAACTATCT+TGG + chr1_1:50283118-50283137 Msa0026420:intron 20.0%
!!! AAAAAAAAGTGTCCTTTTTT+AGG + chr1_1:50283183-50283202 Msa0026420:intron 20.0%
!!! AAAAAAAGTGTCCTTTTTTA+GGG + chr1_1:50283184-50283203 Msa0026420:intron 20.0%
!! AGATTTAACAGTTTATACAA+CGG + chr1_1:50283256-50283275 Msa0026420:intron 20.0%
!! TAGCAAAAGAAATTTAAAGA+TGG + chr1_1:50283410-50283429 Msa0026420:intron 20.0%
!! ATATTAATTACCTATGTTGT+GGG - chr1_1:50283805-50283824 None:intergenic 20.0%
!! TATATTAATTACCTATGTTG+TGG - chr1_1:50283806-50283825 None:intergenic 20.0%
!! CTTCTATTTGTAATTATTTG+AGG + chr1_1:50283858-50283877 Msa0026420:intron 20.0%
!!! ATGTATTTTAAATCCACAAT+TGG - chr1_1:50284213-50284232 None:intergenic 20.0%
!!! CTTTGAAATAAAACTATTGT+TGG - chr1_1:50284467-50284486 None:intergenic 20.0%
!!! ATTTCAAACAATTTTAGTCT+AGG - chr1_1:50284496-50284515 None:intergenic 20.0%
!! TCAAAATTTGTATTATGCAA+TGG + chr1_1:50284857-50284876 Msa0026420:intron 20.0%
!! TTCAAAAATAAAAGACAAAG+TGG - chr1_1:50284905-50284924 None:intergenic 20.0%
!!! GGTAAAACTTTTTACATTAA+CGG + chr1_1:50285144-50285163 Msa0026420:intron 20.0%
!!! TTTGTTAATTTTTATGATCC+AGG + chr1_1:50285330-50285349 Msa0026420:intron 20.0%
!! TGAGTAAAAACATCAATTAA+GGG - chr1_1:50285553-50285572 None:intergenic 20.0%
!! TTGAGTAAAAACATCAATTA+AGG - chr1_1:50285554-50285573 None:intergenic 20.0%
!! TTAATAAATTCTCACCAATT+TGG - chr1_1:50285876-50285895 None:intergenic 20.0%
!! TGAGAATTTATTAAAGAAAC+CGG + chr1_1:50285882-50285901 Msa0026420:CDS 20.0%
!! TTAAGATTAATTAGTAGAGA+TGG + chr1_1:50285985-50286004 Msa0026420:intron 20.0%
!! TTGTTGCACAATTATAATTT+GGG - chr1_1:50286027-50286046 None:intergenic 20.0%
!! ATTGTTGCACAATTATAATT+TGG - chr1_1:50286028-50286047 None:intergenic 20.0%
!! TATTCTATTCTAATACATTC+AGG + chr1_1:50286071-50286090 Msa0026420:intron 20.0%
!!! TTTTTTTTGACAATGATACA+CGG - chr1_1:50286320-50286339 None:intergenic 20.0%
! GAGTATGGTTTATATATTTC+AGG - chr1_1:50282595-50282614 None:intergenic 25.0%
! ATTACATAAAATTTCGATGG+AGG + chr1_1:50282676-50282695 Msa0026420:exon 25.0%
! TTACATAAAATTTCGATGGA+GGG + chr1_1:50282677-50282696 Msa0026420:exon 25.0%
!!! TAACCATTCTTAGTATTGAT+GGG + chr1_1:50282753-50282772 Msa0026420:CDS 25.0%
!!! TGAAAGTACCTTGTATATAT+TGG + chr1_1:50282850-50282869 Msa0026420:intron 25.0%
! TTAAAATTCGAACTCTAAGT+AGG - chr1_1:50282886-50282905 None:intergenic 25.0%
!!! AAAAAAGTGTCCTTTTTTAG+GGG + chr1_1:50283185-50283204 Msa0026420:intron 25.0%
! ACAAAAAATTCCCCTAAAAA+AGG - chr1_1:50283198-50283217 None:intergenic 25.0%
!! TATGTTGTGGGAAAATTTTA+GGG - chr1_1:50283793-50283812 None:intergenic 25.0%
!!! TGAGGAATTCAAGTTTTTTA+TGG + chr1_1:50283891-50283910 Msa0026420:intron 25.0%
!!! ATTGGTTCAATTTTTTGTAG+AGG + chr1_1:50283939-50283958 Msa0026420:intron 25.0%
!! AGGTATTTTCCATCATATTT+GGG - chr1_1:50284011-50284030 None:intergenic 25.0%
!!! AAGGTATTTTCCATCATATT+TGG - chr1_1:50284012-50284031 None:intergenic 25.0%
! TGATAAGATGAGAAAATGAT+TGG - chr1_1:50284128-50284147 None:intergenic 25.0%
!! AATCATTTTCTCATCTTATC+AGG + chr1_1:50284127-50284146 Msa0026420:CDS 25.0%
! TAGTTTAGTTAAGAATCGTT+TGG + chr1_1:50284325-50284344 Msa0026420:intron 25.0%
! AGTTTAGTTAAGAATCGTTT+GGG + chr1_1:50284326-50284345 Msa0026420:intron 25.0%
!!! TTTATTTGGTCTTAAAACTG+TGG - chr1_1:50284416-50284435 None:intergenic 25.0%
! AATTGATTATTTGCACATAC+CGG - chr1_1:50284689-50284708 None:intergenic 25.0%
! CATACATCCATAATGTAATT+GGG - chr1_1:50284955-50284974 None:intergenic 25.0%
!!! GATGTATGCACTTTTTATTT+TGG + chr1_1:50284967-50284986 Msa0026420:intron 25.0%
! TGAAGAAAGAAACTCAAATA+AGG + chr1_1:50285241-50285260 Msa0026420:intron 25.0%
! TAACAAATTCAACAAAATGC+AGG + chr1_1:50285783-50285802 Msa0026420:intron 25.0%
TAATGGTGTGATGAAAACAA+AGG - chr1_1:50282625-50282644 None:intergenic 30.0%
! GTAACCATTCTTAGTATTGA+TGG + chr1_1:50282752-50282771 Msa0026420:CDS 30.0%
!! AACCATTCTTAGTATTGATG+GGG + chr1_1:50282754-50282773 Msa0026420:CDS 30.0%
! TACCTTGTATATATTGGCTA+TGG + chr1_1:50282856-50282875 Msa0026420:intron 30.0%
!! GTAAGTTGGTTCCATAATAA+TGG + chr1_1:50283072-50283091 Msa0026420:intron 30.0%
TAGTGCATCTACTTTATGAA+AGG + chr1_1:50283147-50283166 Msa0026420:intron 30.0%
TTCAGACACTAACACTTAAT+AGG + chr1_1:50283343-50283362 Msa0026420:intron 30.0%
TCAGACACTAACACTTAATA+GGG + chr1_1:50283344-50283363 Msa0026420:intron 30.0%
!! TATGTTTATTTTTCGTGGCT+AGG - chr1_1:50283387-50283406 None:intergenic 30.0%
! AATTCAGTCACAGAATTTTG+CGG + chr1_1:50283453-50283472 Msa0026420:intron 30.0%
!! AATTAAGTTGATCTGTGTGT+AGG + chr1_1:50283610-50283629 Msa0026420:intron 30.0%
!!! AGTGGACGATTATTTTTATC+TGG - chr1_1:50283728-50283747 None:intergenic 30.0%
!!! AAATTTTAGGGCAATGTTCA+AGG - chr1_1:50283781-50283800 None:intergenic 30.0%
! CTATGTTGTGGGAAAATTTT+AGG - chr1_1:50283794-50283813 None:intergenic 30.0%
! CTAAAATTTTCCCACAACAT+AGG + chr1_1:50283792-50283811 Msa0026420:CDS 30.0%
! ATTTGAGGTGTATATACTTG+AGG + chr1_1:50283873-50283892 Msa0026420:intron 30.0%
!!! TCAATTTTTTGTAGAGGACT+TGG + chr1_1:50283945-50283964 Msa0026420:intron 30.0%
AAAGTCTTGATGTCAAATGT+GGG - chr1_1:50284101-50284120 None:intergenic 30.0%
AGCTGAAACAATTATTGATC+AGG + chr1_1:50284369-50284388 Msa0026420:intron 30.0%
!! ACTGTGGTTTTTCTAAAGAT+AGG - chr1_1:50284400-50284419 None:intergenic 30.0%
AAAGTTTAGCATCCAAACAA+GGG - chr1_1:50284538-50284557 None:intergenic 30.0%
CAACTTCACAAATAAAGATC+AGG + chr1_1:50284607-50284626 Msa0026420:CDS 30.0%
GTATTATGCAATGGCATATA+TGG + chr1_1:50284866-50284885 Msa0026420:intron 30.0%
! AGACAAAGTGGATTTAATCA+TGG - chr1_1:50284893-50284912 None:intergenic 30.0%
ACTAGATCCCAATTACATTA+TGG + chr1_1:50284945-50284964 Msa0026420:intron 30.0%
GCATACATCCATAATGTAAT+TGG - chr1_1:50284956-50284975 None:intergenic 30.0%
! CGTTTTCTGATCATTTCAAT+AGG + chr1_1:50285436-50285455 Msa0026420:CDS 30.0%
!! GATGTTTTTACTCAATCAAG+TGG + chr1_1:50285559-50285578 Msa0026420:CDS 30.0%
TGATAATTACCTTCGAATTC+AGG + chr1_1:50285633-50285652 Msa0026420:CDS 30.0%
TTGAAGAAACTATGCCAAAT+TGG + chr1_1:50285859-50285878 Msa0026420:CDS 30.0%
TCCAGAGTCAATTTAGAAAA+TGG + chr1_1:50285907-50285926 Msa0026420:CDS 30.0%
!! ACCATTTTCTAAATTGACTC+TGG - chr1_1:50285911-50285930 None:intergenic 30.0%
TTGCACAATTATAATTTGGG+TGG - chr1_1:50286024-50286043 None:intergenic 30.0%
CAAAAATACTTTCACAAGAG+AGG + chr1_1:50286098-50286117 Msa0026420:CDS 30.0%
AACAAAGGCTGTATAGAGTA+TGG - chr1_1:50282610-50282629 None:intergenic 35.0%
TTACCAAGTTCCCATAAGTA+GGG - chr1_1:50282736-50282755 None:intergenic 35.0%
!! ACCATTCTTAGTATTGATGG+GGG + chr1_1:50282755-50282774 Msa0026420:CDS 35.0%
GGAATTCAATAATTGCAGCA+GGG - chr1_1:50282799-50282818 None:intergenic 35.0%
AGGAATTCAATAATTGCAGC+AGG - chr1_1:50282800-50282819 None:intergenic 35.0%
AGCCATAGCCAATATATACA+AGG - chr1_1:50282861-50282880 None:intergenic 35.0%
GTTCCATAATAATGGCAGTA+GGG + chr1_1:50283080-50283099 Msa0026420:intron 35.0%
TTATGCAAACTATCTTGGTG+AGG + chr1_1:50283123-50283142 Msa0026420:intron 35.0%
TGGCTAGGTTTATTAGTAGT+TGG - chr1_1:50283372-50283391 None:intergenic 35.0%
GATTACTTTGATGTGATCTC+AGG + chr1_1:50283662-50283681 Msa0026420:CDS 35.0%
ATATCTTTGGCAGCAAAAAG+TGG - chr1_1:50283746-50283765 None:intergenic 35.0%
GTAAAAGGGCTTGATATCTT+TGG - chr1_1:50283759-50283778 None:intergenic 35.0%
TCTCTCTAACAACTTGATGA+AGG - chr1_1:50284031-50284050 None:intergenic 35.0%
CAAGTTGTTAGAGAGAAACT+TGG + chr1_1:50284035-50284054 Msa0026420:CDS 35.0%
AAATGTGGGAACAACAATGT+TGG - chr1_1:50284087-50284106 None:intergenic 35.0%
CAAAGTCTTGATGTCAAATG+TGG - chr1_1:50284102-50284121 None:intergenic 35.0%
TAATGGAATGTTGCCAATTG+TGG + chr1_1:50284197-50284216 Msa0026420:intron 35.0%
GTCAAGTTATTGAACTCAAG+TGG + chr1_1:50284295-50284314 Msa0026420:intron 35.0%
AAGTTTAGCATCCAAACAAG+GGG - chr1_1:50284537-50284556 None:intergenic 35.0%
GAAAGTTTAGCATCCAAACA+AGG - chr1_1:50284539-50284558 None:intergenic 35.0%
TATTTGTGAAGTTGTGAGCA+GGG - chr1_1:50284601-50284620 None:intergenic 35.0%
TTATTTGTGAAGTTGTGAGC+AGG - chr1_1:50284602-50284621 None:intergenic 35.0%
ACAAATAAAGATCAGGAAGC+TGG + chr1_1:50284614-50284633 Msa0026420:CDS 35.0%
TGGTGTTTGTGCAAATAATC+CGG + chr1_1:50284667-50284686 Msa0026420:CDS 35.0%
! CTGCTTTGTTACTTCATTCA+TGG - chr1_1:50285365-50285384 None:intergenic 35.0%
TGATCATTTCAATAGGCACT+GGG + chr1_1:50285443-50285462 Msa0026420:CDS 35.0%
CCAATCTAATAATCCCCATT+TGG - chr1_1:50285509-50285528 None:intergenic 35.0%
CCAAATGGGGATTATTAGAT+TGG + chr1_1:50285506-50285525 Msa0026420:CDS 35.0%
! TTAGATTGGCTAACACATAG+TGG + chr1_1:50285520-50285539 Msa0026420:CDS 35.0%
TACTCAATCAAGTGGTGATA+TGG + chr1_1:50285567-50285586 Msa0026420:CDS 35.0%
! GGAATTTTACCTGAATTCGA+AGG - chr1_1:50285645-50285664 None:intergenic 35.0%
TTCTTCAGTAGACATTGCAA+CGG + chr1_1:50285828-50285847 Msa0026420:CDS 35.0%
TGAATCATGAAACTAGATGC+CGG - chr1_1:50286171-50286190 None:intergenic 35.0%
AAATTCAGCCCCCTACTTAT+GGG + chr1_1:50282723-50282742 Msa0026420:CDS 40.0%
TACCAAGTTCCCATAAGTAG+GGG - chr1_1:50282735-50282754 None:intergenic 40.0%
GTTACCAAGTTCCCATAAGT+AGG - chr1_1:50282737-50282756 None:intergenic 40.0%
TCCCCCATCAATACTAAGAA+TGG - chr1_1:50282759-50282778 None:intergenic 40.0%
!! ATTCTTAGTATTGATGGGGG+AGG + chr1_1:50282758-50282777 Msa0026420:CDS 40.0%
!! TATTGATGGGGGAGGTATTA+GGG + chr1_1:50282766-50282785 Msa0026420:CDS 40.0%
ATTCCTTGAATCTCACCTTC+AGG + chr1_1:50282814-50282833 Msa0026420:CDS 40.0%
ATACCTGAAGGTGAGATTCA+AGG - chr1_1:50282820-50282839 None:intergenic 40.0%
GGTTCCATAATAATGGCAGT+AGG + chr1_1:50283079-50283098 Msa0026420:intron 40.0%
CATCCCTACTGCCATTATTA+TGG - chr1_1:50283086-50283105 None:intergenic 40.0%
! TTTATCTGGAGCAGCTAACA+TGG - chr1_1:50283714-50283733 None:intergenic 40.0%
GGGCAATGTTCAAGGTAAAA+GGG - chr1_1:50283773-50283792 None:intergenic 40.0%
AGGGCAATGTTCAAGGTAAA+AGG - chr1_1:50283774-50283793 None:intergenic 40.0%
GCAAAGGTAATGAGATCTCT+TGG + chr1_1:50283981-50284000 Msa0026420:CDS 40.0%
AAGGTAATGAGATCTCTTGG+AGG + chr1_1:50283984-50284003 Msa0026420:CDS 40.0%
GAGGAGTTCAATCTCATTGA+TGG + chr1_1:50284644-50284663 Msa0026420:CDS 40.0%
GAGTTCAATCTCATTGATGG+TGG + chr1_1:50284647-50284666 Msa0026420:CDS 40.0%
! GATTGTTGTGCGCTGATATA+TGG + chr1_1:50285123-50285142 Msa0026420:intron 40.0%
GGCTTGATTGGAAAGAAATC+AGG - chr1_1:50285403-50285422 None:intergenic 40.0%
TTTCTTTCCAATCAAGCCTC+TGG + chr1_1:50285405-50285424 Msa0026420:CDS 40.0%
AGAAAACGACCATATTCCAG+AGG - chr1_1:50285424-50285443 None:intergenic 40.0%
CTGATCATTTCAATAGGCAC+TGG + chr1_1:50285442-50285461 Msa0026420:CDS 40.0%
ATGGTAGTAGGAGTCGAATT+CGG + chr1_1:50285690-50285709 Msa0026420:intron 40.0%
TATTAATGGCGTAACCTCTG+AGG - chr1_1:50285718-50285737 None:intergenic 40.0%
TAGATATAGCGCAAGCTAAG+TGG - chr1_1:50285756-50285775 None:intergenic 40.0%
ATGCAGGATGATACATTGAC+AGG + chr1_1:50285799-50285818 Msa0026420:intron 40.0%
! TCTAAATTGACTCTGGAGAC+CGG - chr1_1:50285904-50285923 None:intergenic 40.0%
! CATTTTGAGCCACTAACAAC+CGG + chr1_1:50285931-50285950 Msa0026420:CDS 40.0%
!! AGCATCTTCATTGGTTTCTC+CGG - chr1_1:50285953-50285972 None:intergenic 40.0%
GAATCATGAAACTAGATGCC+GGG - chr1_1:50286170-50286189 None:intergenic 40.0%
CAAATTCAGCCCCCTACTTA+TGG + chr1_1:50282722-50282741 Msa0026420:CDS 45.0%
ACCAAGTTCCCATAAGTAGG+GGG - chr1_1:50282734-50282753 None:intergenic 45.0%
!! GTATTGATGGGGGAGGTATT+AGG + chr1_1:50282765-50282784 Msa0026420:CDS 45.0%
!! ATTGATGGGGGAGGTATTAG+GGG + chr1_1:50282767-50282786 Msa0026420:CDS 45.0%
CAATAATTGCAGCAGGGATG+AGG - chr1_1:50282793-50282812 None:intergenic 45.0%
GTTGATCTGTGTGTAGGAGT+TGG + chr1_1:50283616-50283635 Msa0026420:intron 45.0%
ATCTGTGTGTAGGAGTTGGA+TGG + chr1_1:50283620-50283639 Msa0026420:intron 45.0%
AGTTGGATGGTGAAGATGCA+AGG + chr1_1:50283633-50283652 Msa0026420:CDS 45.0%
GTGATCTCAGGAACAAGTAC+AGG + chr1_1:50283674-50283693 Msa0026420:CDS 45.0%
ATCTCAGGAACAAGTACAGG+AGG + chr1_1:50283677-50283696 Msa0026420:CDS 45.0%
TGGTGCGACACTATTAGCAA+AGG + chr1_1:50283965-50283984 Msa0026420:CDS 45.0%
CTTGGAGGACCCAAATATGA+TGG + chr1_1:50283999-50284018 Msa0026420:CDS 45.0%
TTGTGAGCAGGGAGATAAGT+AGG - chr1_1:50284590-50284609 None:intergenic 45.0%
TCAGGAAGCTGGAAAAGAAG+AGG + chr1_1:50284625-50284644 Msa0026420:CDS 45.0%
CATTCATGGCAACTAAAGCC+TGG - chr1_1:50285351-50285370 None:intergenic 45.0%
CCATATTCCAGAGGCTTGAT+TGG - chr1_1:50285415-50285434 None:intergenic 45.0%
!! CCAATCAAGCCTCTGGAATA+TGG + chr1_1:50285412-50285431 Msa0026420:CDS 45.0%
CACTGGGACTGCAAAAAATG+AGG + chr1_1:50285459-50285478 Msa0026420:CDS 45.0%
GGACTGCAAAAAATGAGGAG+AGG + chr1_1:50285464-50285483 Msa0026420:CDS 45.0%
TGCACAAATGGCAGCCAAAT+GGG + chr1_1:50285492-50285511 Msa0026420:CDS 45.0%
TTCAGTAGACATTGCAACGG+AGG + chr1_1:50285831-50285850 Msa0026420:CDS 45.0%
TTGGTTTCTCCGGTTGTTAG+TGG - chr1_1:50285943-50285962 None:intergenic 45.0%
!! CCTCTTGAGAGCATCTTCAT+TGG - chr1_1:50285962-50285981 None:intergenic 45.0%
CCAATGAAGATGCTCTCAAG+AGG + chr1_1:50285959-50285978 Msa0026420:CDS 45.0%
TCTTGCCTCTACTTGTGTGT+GGG - chr1_1:50286144-50286163 None:intergenic 45.0%
TTCTTGCCTCTACTTGTGTG+TGG - chr1_1:50286145-50286164 None:intergenic 45.0%
!! ATTATTTAATTAATAATTGA+AGG + chr1_1:50285298-50285317 Msa0026420:intron 5.0%
!!! AAAAAAAAAAAAAAAAGTAT+AGG - chr1_1:50285666-50285685 None:intergenic 5.0%
GCTTCAGAGATCCCCTTGTT+TGG + chr1_1:50284523-50284542 Msa0026420:intron 50.0%
GGAGAGGTTCACTGCACAAA+TGG + chr1_1:50285480-50285499 Msa0026420:CDS 50.0%
CTGCACAAATGGCAGCCAAA+TGG + chr1_1:50285491-50285510 Msa0026420:CDS 50.0%
GCACAAATGGCAGCCAAATG+GGG + chr1_1:50285493-50285512 Msa0026420:CDS 50.0%
AGTCGAATTCGGTACCTCAG+AGG + chr1_1:50285701-50285720 Msa0026420:intron 50.0%
AGATCCCCACACACAAGTAG+AGG + chr1_1:50286136-50286155 Msa0026420:CDS 50.0%
CTTGCCTCTACTTGTGTGTG+GGG - chr1_1:50286143-50286162 None:intergenic 50.0%
CAAGTAGAGGCAAGAAAGCC+CGG + chr1_1:50286149-50286168 Msa0026420:CDS 50.0%
GCCCCCTACTTATGGGAACT+TGG + chr1_1:50282730-50282749 Msa0026420:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 50282555 50286408 50282555 ID=Msa0026420;Name=Msa0026420
chr1_1 mRNA 50282555 50286408 50282555 ID=Msa0026420-mRNA-1;Parent=Msa0026420;Name=Msa0026420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=137|1|0.85|1|1|1|7|222|417
chr1_1 exon 50282555 50282835 50282555 ID=Msa0026420-mRNA-1:exon:14577;Parent=Msa0026420-mRNA-1
chr1_1 exon 50283632 50283813 50283632 ID=Msa0026420-mRNA-1:exon:14578;Parent=Msa0026420-mRNA-1
chr1_1 exon 50283959 50284148 50283959 ID=Msa0026420-mRNA-1:exon:14579;Parent=Msa0026420-mRNA-1
chr1_1 exon 50284524 50284688 50284524 ID=Msa0026420-mRNA-1:exon:14580;Parent=Msa0026420-mRNA-1
chr1_1 exon 50285352 50285654 50285352 ID=Msa0026420-mRNA-1:exon:14581;Parent=Msa0026420-mRNA-1
chr1_1 exon 50285805 50285980 50285805 ID=Msa0026420-mRNA-1:exon:14582;Parent=Msa0026420-mRNA-1
chr1_1 exon 50286093 50286408 50286093 ID=Msa0026420-mRNA-1:exon:14583;Parent=Msa0026420-mRNA-1
chr1_1 five_prime_UTR 50282555 50282691 50282555 ID=Msa0026420-mRNA-1:five_prime_utr;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50282692 50282835 50282692 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50283632 50283813 50283632 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50283959 50284148 50283959 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50284524 50284688 50284524 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50285352 50285654 50285352 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50285805 50285980 50285805 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 CDS 50286093 50286186 50286093 ID=Msa0026420-mRNA-1:cds;Parent=Msa0026420-mRNA-1
chr1_1 three_prime_UTR 50286187 50286408 50286187 ID=Msa0026420-mRNA-1:three_prime_utr;Parent=Msa0026420-mRNA-1
Gene Sequence

>Msa0026420

ATGGAGGGAGTCACAAATTTATCTGTTGAACAAATTCAGCCCCCTACTTATGGGAACTTGGTAACCATTCTTAGTATTGATGGGGGAGGTATTAGGGGCCTCATCCCTGCTGCAATTATTGAATTCCTTGAATCTCACCTTCAGGAGTTGGATGGTGAAGATGCAAGGCTTGCAGATTACTTTGATGTGATCTCAGGAACAAGTACAGGAGGTCTTGTAACTGCCATGTTAGCTGCTCCAGATAAAAATAATCGTCCACTTTTTGCTGCCAAAGATATCAAGCCCTTTTACCTTGAACATTGCCCTAAAATTTTCCCACAACATAGAGGACTTGGTGCGACACTATTAGCAAAGGTAATGAGATCTCTTGGAGGACCCAAATATGATGGAAAATACCTTCATCAAGTTGTTAGAGAGAAACTTGGAGACATTCGCTTGCATGAAACACTCACCAACATTGTTGTTCCCACATTTGACATCAAGACTTTGCAGCCAATCATTTTCTCATCTTATCAGCTTCAGAGATCCCCTTGTTTGGATGCTAAACTTTCAGACATATGCATTAGCACTTCAGCTGCTCCTACTTATCTCCCTGCTCACAACTTCACAAATAAAGATCAGGAAGCTGGAAAAGAAGAGGAGTTCAATCTCATTGATGGTGGTGTTTGTGCAAATAATCCGGCTTTAGTTGCCATGAATGAAGTAACAAAGCAGATTATAAATCAAAGTCCTGATTTCTTTCCAATCAAGCCTCTGGAATATGGTCGTTTTCTGATCATTTCAATAGGCACTGGGACTGCAAAAAATGAGGAGAGGTTCACTGCACAAATGGCAGCCAAATGGGGATTATTAGATTGGCTAACACATAGTGGTTCTAATCCCTTAATTGATGTTTTTACTCAATCAAGTGGTGATATGGTCGATTTTCATTTATCTGCTGTCACTCAAGCTCTTCATTCAGCTGATAATTACCTTCGAATTCAGGATGATACATTGACAGGAATAGATTCTTCAGTAGACATTGCAACGGAGGAGAACTTGAAGAAACTATGCCAAATTGGTGAGAATTTATTAAAGAAACCGGTCTCCAGAGTCAATTTAGAAAATGGTCATTTTGAGCCACTAACAACCGGAGAAACCAATGAAGATGCTCTCAAGAGGCTTGCAAAAATACTTTCACAAGAGAGGAGACTTAGAGAAATGAGATCCCCACACACAAGTAGAGGCAAGAAAGCCCGGCATCTAGTTTCATGA

Protein sequence

>Msa0026420

MEGVTNLSVEQIQPPTYGNLVTILSIDGGGIRGLIPAAIIEFLESHLQELDGEDARLADYFDVISGTSTGGLVTAMLAAPDKNNRPLFAAKDIKPFYLEHCPKIFPQHRGLGATLLAKVMRSLGGPKYDGKYLHQVVREKLGDIRLHETLTNIVVPTFDIKTLQPIIFSSYQLQRSPCLDAKLSDICISTSAAPTYLPAHNFTNKDQEAGKEEEFNLIDGGVCANNPALVAMNEVTKQIINQSPDFFPIKPLEYGRFLIISIGTGTAKNEERFTAQMAAKWGLLDWLTHSGSNPLIDVFTQSSGDMVDFHLSAVTQALHSADNYLRIQDDTLTGIDSSVDIATEENLKKLCQIGENLLKKPVSRVNLENGHFEPLTTGETNEDALKRLAKILSQERRLREMRSPHTSRGKKARHLVS*