AlfalfaGEDB | Msa0432420

M. sativa cultivar zhongmu-4 / Msa0432420

KEGG: -
GO: -
PFAM: PF00197.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432420	XP_013461880.1	98.104	211	4	0	1	211	1	211	5.75e-150	425

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432420	sp\|P32765\|ASP_THECC	35.238	210	109	11	6	198	11	210	5.82e-15	73.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432420	A0A072VCP7	98.104	211	4	0	1	211	1	211	2.75e-150	425

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0432420	Msa0476840	0.919180	6.210776e-87	-8.615850e-47
Msa0432420	Msa0521210	0.968098	3.391473e-128	-8.615850e-47
Msa0432420	Msa0714640	0.840907	6.554643e-58	-8.615850e-47
Msa0432420	Msa0829130	0.920316	1.493026e-87	-8.615850e-47
Msa0432420	Msa0893860	0.864946	8.432317e-65	-8.615850e-47
Msa0432420	Msa0920520	0.839860	1.230663e-57	-8.615850e-47
Msa0432420	Msa1031410	0.815741	7.913418e-52	-8.615850e-47
Msa0432420	Msa1367040	0.836813	7.508301e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432420	MtrunA17_Chr3g0137421	98.104	211	4	0	1	211	1	211	5.29e-154	425
Msa0432420	MtrunA17_Chr3g0137441	81.221	213	38	1	1	211	1	213	7.90e-126	353
Msa0432420	MtrunA17_Chr3g0137411	66.667	207	67	2	1	205	1	207	2.93e-96	279
Msa0432420	MtrunA17_Chr6g0481911	34.555	191	100	8	24	197	21	203	2.10e-22	90.1
Msa0432420	MtrunA17_Chr6g0482041	33.333	216	109	10	9	198	7	213	1.67e-21	88.2
Msa0432420	MtrunA17_Chr6g0481941	34.197	193	100	8	24	197	21	205	2.06e-20	85.1
Msa0432420	MtrunA17_Chr6g0481961	31.579	209	104	10	17	197	16	213	1.90e-15	72.0
Msa0432420	MtrunA17_Chr6g0481951	31.579	209	104	10	17	197	16	213	1.98e-15	72.0
Msa0432420	MtrunA17_Chr7g0269461	30.000	180	112	8	27	196	25	200	2.14e-13	66.2
Msa0432420	MtrunA17_Chr6g0452521	31.953	169	99	7	4	162	39	201	1.32e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0432420	AT1G73260.1	33.871	186	100	11	28	198	29	206	3.23e-15	71.6
Msa0432420	AT1G17860.1	32.857	210	104	14	6	197	5	195	4.16e-15	71.2
Msa0432420	AT1G73330.1	31.694	183	108	10	24	199	22	194	2.09e-14	69.3
Msa0432420	AT1G73325.1	28.426	197	123	7	12	197	14	203	4.18e-12	63.5

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Find 49 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTATGGCTGTTGGCGA+TGG	0.567290	3_2:-84563840	Msa0432420:CDS
AACCCTCTTCAACCAGGTGA+AGG	0.586328	3_2:-84564269	Msa0432420:CDS
AACCTTCACCTGGTTGAAGA+GGG	0.550922	3_2:+84564267	None:intergenic
AAGTTCTGTCCTTCTGTTCC+TGG	0.220195	3_2:-84563909	Msa0432420:CDS
AATACATAATAACCTTCACC+TGG	0.663956	3_2:+84564257	None:intergenic
ACAGGAGCACAAAGAACACC+AGG	0.637032	3_2:+84563891	None:intergenic
ACCATTGAGATTCCAATTCT+GGG	0.428272	3_2:-84564083	Msa0432420:CDS
ACTACAAGGAGCTGAACCAG+AGG	0.651073	3_2:-84564312	Msa0432420:CDS
ACTGGTGTGCCAATTGCATC+AGG	0.400173	3_2:+84564155	None:intergenic
ATCCGTAACCCTGATGCAAT+TGG	0.467790	3_2:-84564164	Msa0432420:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACATAATAACCTTCACC+TGG	+	chr3_2:84563875-84563894	None:intergenic	30.0%
TACTGATGGAACTAAAGTTA+TGG	-	chr3_2:84564276-84564295	Msa0432420:CDS	30.0%
TAATGTTATGCCTCCATTGT+CGG	+	chr3_2:84563909-84563928	None:intergenic	35.0%
ACCATTGAGATTCCAATTCT+GGG	-	chr3_2:84564046-84564065	Msa0432420:CDS	35.0%
TTAGCAAGTTCAAGATTGAG+AGG	-	chr3_2:84564161-84564180	Msa0432420:CDS	35.0%
GTATCTACAAAAGTTCCTAC+AGG	+	chr3_2:84564259-84564278	None:intergenic	35.0%
TGAACAACGCTAAGAGAGAA+AGG	+	chr3_2:84563787-84563806	None:intergenic	40.0%
TTCAACACAAAGCCACTACA+AGG	-	chr3_2:84563803-84563822	Msa0432420:CDS	40.0%
CCTGATGCAGAGAAATAAAC+TGG	+	chr3_2:84563995-84564014	None:intergenic	40.0%
CACCATTGAGATTCCAATTC+TGG	-	chr3_2:84564045-84564064	Msa0432420:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	84563758	84564393	84563758	ID=Msa0432420;Name=Msa0432420
chr3_2	mRNA	84563758	84564393	84563758	ID=Msa0432420-mRNA-1;Parent=Msa0432420;Name=Msa0432420-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|211
chr3_2	exon	84563758	84564393	84563758	ID=Msa0432420-mRNA-1:exon:23943;Parent=Msa0432420-mRNA-1
chr3_2	CDS	84563758	84564393	84563758	ID=Msa0432420-mRNA-1:cds;Parent=Msa0432420-mRNA-1

Gene Sequence

>Msa0432420

ATGAAATTCATTCAACTCTTTTGCTTCCTTTCTCTCTTAGCGTTGTTCAACACAAAGCCACTACAAGGAGCTGAACCAGAGGCAGTAGTAGACAAACAAGGTAACCCTCTTCAACCAGGTGAAGGTTATTATGTATTTCCACTTTGGGCCGACAATGGAGGCATAACATTAGGACAAACAAGAAACAAAACATGTCCTCTTGACGTAATCCGTAACCCTGATGCAATTGGCACACCAGTTTATTTCTCTGCATCAGGTCTTGATTACATTCCAACTCTCACTGATCTCACCATTGAGATTCCAATTCTGGGCAGTCCTTGCAATGAACCAAAAGTGTGGAGACTTTTAAAGGTTGGATCTGGGTTTTGGTTTGTGAGCACTGGTGGTGCAGCTGGGGATCTTGTTAGCAAGTTCAAGATTGAGAGGCTTGCAGGAGAACATGCTTATGAGATATATAGCTTTAAGTTCTGTCCTTCTGTTCCTGGTGTTCTTTGTGCTCCTGTAGGAACTTTTGTAGATACTGATGGAACTAAAGTTATGGCTGTTGGCGATGGTATTGAAGAACCTTACTATGTTAGATTTCAGAAGGCTTCCACTTTTGCTCAGAGCAATAATCAATATTTGAGCAGTGTGTAA

Protein sequence

>Msa0432420

MKFIQLFCFLSLLALFNTKPLQGAEPEAVVDKQGNPLQPGEGYYVFPLWADNGGITLGQTRNKTCPLDVIRNPDAIGTPVYFSASGLDYIPTLTDLTIEIPILGSPCNEPKVWRLLKVGSGFWFVSTGGAAGDLVSKFKIERLAGEHAYEIYSFKFCPSVPGVLCAPVGTFVDTDGTKVMAVGDGIEEPYYVRFQKASTFAQSNNQYLSSV*