Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829130 | XP_013461880.1 | 52.941 | 187 | 54 | 4 | 204 | 358 | 17 | 201 | 1.78e-49 | 176 |
| Msa0829130 | XP_013461880.1 | 98.086 | 209 | 4 | 0 | 1 | 209 | 1 | 209 | 4.31e-146 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829130 | sp|P32765|ASP_THECC | 35.238 | 210 | 109 | 11 | 6 | 198 | 11 | 210 | 1.01e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829130 | A0A072VCP7 | 52.941 | 187 | 54 | 4 | 204 | 358 | 17 | 201 | 8.49e-50 | 176 |
| Msa0829130 | A0A072VCP7 | 98.086 | 209 | 4 | 0 | 1 | 209 | 1 | 209 | 2.06e-146 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0714640 | Msa0829130 | 0.830042 | 3.669487e-55 | -8.615850e-47 |
| Msa0829130 | Msa0893860 | 0.881793 | 1.786010e-70 | -8.615850e-47 |
| Msa0829130 | Msa0920520 | 0.836356 | 9.820021e-57 | -8.615850e-47 |
| Msa0829130 | Msa1031410 | 0.820831 | 5.572706e-53 | -8.615850e-47 |
| Msa0829130 | Msa1070500 | 0.800569 | 1.355184e-48 | -8.615850e-47 |
| Msa0829130 | Msa1101160 | 0.806472 | 8.089489e-50 | -8.615850e-47 |
| Msa0829130 | Msa1338540 | 0.803270 | 3.776329e-49 | -8.615850e-47 |
| Msa0829130 | Msa1367040 | 0.848720 | 5.120922e-60 | -8.615850e-47 |
| Msa0212300 | Msa0829130 | 0.810994 | 8.737568e-51 | -8.615850e-47 |
| Msa0432420 | Msa0829130 | 0.920316 | 1.493026e-87 | -8.615850e-47 |
| Msa0476840 | Msa0829130 | 0.999565 | 1.976263e-323 | -8.615850e-47 |
| Msa0521210 | Msa0829130 | 0.907757 | 3.586875e-81 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829130 | MtrunA17_Chr3g0137421 | 98.086 | 209 | 4 | 0 | 1 | 209 | 1 | 209 | 3.96e-150 | 422 |
| Msa0829130 | MtrunA17_Chr3g0137421 | 52.941 | 187 | 54 | 4 | 204 | 358 | 17 | 201 | 1.63e-53 | 176 |
| Msa0829130 | MtrunA17_Chr3g0137441 | 81.517 | 211 | 37 | 1 | 1 | 209 | 1 | 211 | 1.76e-122 | 352 |
| Msa0829130 | MtrunA17_Chr3g0137441 | 48.958 | 192 | 62 | 6 | 204 | 361 | 17 | 206 | 7.93e-47 | 158 |
| Msa0829130 | MtrunA17_Chr3g0137411 | 66.667 | 207 | 67 | 2 | 1 | 205 | 1 | 207 | 3.07e-93 | 277 |
| Msa0829130 | MtrunA17_Chr3g0137411 | 73.196 | 194 | 16 | 4 | 204 | 363 | 17 | 208 | 4.08e-88 | 264 |
| Msa0829130 | MtrunA17_Chr6g0481911 | 34.555 | 191 | 100 | 8 | 24 | 197 | 21 | 203 | 4.58e-21 | 90.1 |
| Msa0829130 | MtrunA17_Chr6g0481911 | 29.255 | 188 | 82 | 6 | 211 | 353 | 21 | 202 | 2.29e-12 | 65.5 |
| Msa0829130 | MtrunA17_Chr6g0482041 | 33.482 | 224 | 112 | 11 | 1 | 198 | 1 | 213 | 2.53e-20 | 88.2 |
| Msa0829130 | MtrunA17_Chr6g0481941 | 34.197 | 193 | 100 | 8 | 24 | 197 | 21 | 205 | 4.51e-19 | 84.7 |
| Msa0829130 | MtrunA17_Chr6g0481941 | 37.719 | 114 | 59 | 4 | 246 | 353 | 97 | 204 | 6.67e-12 | 64.3 |
| Msa0829130 | MtrunA17_Chr6g0477741 | 35.429 | 175 | 89 | 11 | 6 | 169 | 13 | 174 | 7.49e-13 | 67.4 |
| Msa0829130 | MtrunA17_Chr7g0269461 | 30.000 | 180 | 112 | 8 | 27 | 196 | 25 | 200 | 1.11e-12 | 66.2 |
| Msa0829130 | MtrunA17_Chr6g0452521 | 31.818 | 176 | 103 | 8 | 4 | 169 | 39 | 207 | 6.78e-12 | 64.7 |
| Msa0829130 | MtrunA17_Chr6g0452491 | 31.325 | 166 | 95 | 7 | 6 | 162 | 13 | 168 | 2.62e-11 | 62.8 |
| Msa0829130 | MtrunA17_Chr6g0476921 | 29.570 | 186 | 109 | 8 | 27 | 198 | 26 | 203 | 2.76e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0829130 | AT1G73260.1 | 33.659 | 205 | 111 | 12 | 9 | 198 | 12 | 206 | 3.40e-14 | 71.2 |
| Msa0829130 | AT1G17860.1 | 32.857 | 210 | 104 | 14 | 6 | 197 | 5 | 195 | 4.80e-14 | 70.5 |
| Msa0829130 | AT1G73330.1 | 31.638 | 177 | 105 | 9 | 29 | 199 | 28 | 194 | 1.77e-13 | 69.3 |
| Msa0829130 | AT1G73325.1 | 28.426 | 197 | 123 | 7 | 12 | 197 | 14 | 203 | 3.90e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTATGTATGGCAATTT+TGG | 0.086622 | 5_4:-2079384 | Msa0829130:CDS |
| CACCATTGAGATTCCAATTC+TGG | 0.167642 | 5_4:-2082884 | Msa0829130:CDS |
| CAAAAGAAGGATATGGATTC+TGG | 0.218105 | 5_4:-2079160 | Msa0829130:CDS |
| AAGTTCTGTCCTTCTGTTCC+TGG | 0.220195 | 5_4:-2082709 | Msa0829130:CDS |
| AAGTTCTGTCCTTCTGTTCC+TGG | 0.220895 | 5_4:-2079041 | Msa0829130:CDS |
| TTTCCATTAAAATTCGATTT+AGG | 0.236510 | 5_4:-2079220 | Msa0829130:CDS |
| TAAAGGTTGGATCTGGGTTT+TGG | 0.257005 | 5_4:-2082825 | Msa0829130:CDS |
| CTCTGAAACCTAACATAATA+AGG | 0.265710 | 5_4:+2078939 | None:intergenic |
| TTTAAAAGTCTCCACACTTT+TGG | 0.285295 | 5_4:+2082844 | None:intergenic |
| GTGAGCACTGGTGGTGCAGC+TGG | 0.296941 | 5_4:-2082799 | Msa0829130:CDS |
| TTCAAGATTGAGAGGCTTGC+AGG | 0.297937 | 5_4:-2082760 | Msa0829130:CDS |
| AAGCTTTCAAAAGAAGGATA+TGG | 0.314481 | 5_4:-2079167 | Msa0829130:CDS |
| AGTTACTCGATGATCTTCTT+TGG | 0.325762 | 5_4:+2078900 | None:intergenic |
| TTATTATGTATTTCCACTTT+GGG | 0.342016 | 5_4:-2083046 | Msa0829130:CDS |
| ATCTTGAACCTTATTATGTT+AGG | 0.347996 | 5_4:-2078947 | Msa0829130:CDS |
| CCAGTTTATTTCTCTGCATC+AGG | 0.372005 | 5_4:-2082937 | Msa0829130:CDS |
| TTGCAAGGACTACCCAGAAT+TGG | 0.380957 | 5_4:+2082871 | None:intergenic |
| GTTATTATGTATTTCCACTT+TGG | 0.390718 | 5_4:-2083047 | Msa0829130:CDS |
| CAGGAAAAGGTTACTATGTA+TGG | 0.395314 | 5_4:-2079393 | Msa0829130:CDS |
| ACTGGTGTGCCAATTGCATC+AGG | 0.400173 | 5_4:+2082955 | None:intergenic |
| TAATGTTATGCCTCCATTGT+CGG | 0.403372 | 5_4:+2083023 | None:intergenic |
| TTCAAGATTGAGAAGCTTGA+AGG | 0.408999 | 5_4:-2079092 | Msa0829130:CDS |
| TGCCAATTGCATCAGGGTTA+CGG | 0.410323 | 5_4:+2082962 | None:intergenic |
| CCTGATGCAGAGAAATAAAC+TGG | 0.432071 | 5_4:+2082937 | None:intergenic |
| CACTGGTGGTGTAGCTGGCC+GGG | 0.435680 | 5_4:-2079129 | Msa0829130:CDS |
| ACCATTGAGATTCCAATTCT+GGG | 0.437900 | 5_4:-2082883 | Msa0829130:CDS |
| CACGGTAAGCCTCTTGAGTC+AGG | 0.443286 | 5_4:-2079412 | Msa0829130:CDS |
| GTGAGCACTGGTGGTGTAGC+TGG | 0.443992 | 5_4:-2079134 | Msa0829130:CDS |
| TTCTGAAATCTAACATAGTA+AGG | 0.445442 | 5_4:+2082607 | None:intergenic |
| GGTGTTCTTTGTGCTCCTGT+TGG | 0.451041 | 5_4:-2082688 | Msa0829130:CDS |
| CAGAACTTAAAGATATAGAT+TGG | 0.456697 | 5_4:+2079056 | None:intergenic |
| TGTTTGTCTACTACTGCCTC+TGG | 0.457272 | 5_4:+2083096 | None:intergenic |
| ATGGAAATATCAGTTTGAGT+TGG | 0.463845 | 5_4:+2079236 | None:intergenic |
| GTGTTGAAGCTTTCAAAAGA+AGG | 0.466532 | 5_4:-2079173 | Msa0829130:CDS |
| ATCCGTAACCCTGATGCAAT+TGG | 0.467790 | 5_4:-2082964 | Msa0829130:CDS |
| GCACTGGTGGTGTAGCTGGC+CGG | 0.468361 | 5_4:-2079130 | Msa0829130:CDS |
| GATCTTCTTTGGAGTAAAAG+TGG | 0.474411 | 5_4:+2078911 | None:intergenic |
| ATTATTGCTCTGAGCAAAAG+TGG | 0.480580 | 5_4:+2082579 | None:intergenic |
| TGAGCACTGGTGGTGCAGCT+GGG | 0.484946 | 5_4:-2082798 | Msa0829130:CDS |
| CAAAGAACACCAGGAACAGA+AGG | 0.492794 | 5_4:+2082700 | None:intergenic |
| GACAATGGAGGCATAACATT+AGG | 0.494830 | 5_4:-2083021 | Msa0829130:CDS |
| GTATCTACAAAAGTTCCAAC+AGG | 0.500409 | 5_4:+2082673 | None:intergenic |
| GGATTCTGGTTTGTGAGCAC+TGG | 0.512011 | 5_4:-2079146 | Msa0829130:CDS |
| AAGCCTCTTGAGTCAGGAAA+AGG | 0.518855 | 5_4:-2079406 | Msa0829130:CDS |
| TACTGATGGAACTAAAGTTA+TGG | 0.520354 | 5_4:-2082653 | Msa0829130:CDS |
| TGTCTGTCTACTACTGTCTC+TGG | 0.520358 | 5_4:+2079433 | None:intergenic |
| TACCGATGGAACTAAAGTTA+TGG | 0.520475 | 5_4:-2078982 | Msa0829130:CDS |
| CTTATTATGTTAGGTTTCAG+AGG | 0.522266 | 5_4:-2078938 | Msa0829130:CDS |
| TTCTGGTTTGTGAGCACTGG+TGG | 0.523104 | 5_4:-2079143 | Msa0829130:CDS |
| GAGAAGCTTGAAGGAGACAC+TGG | 0.531287 | 5_4:-2079083 | Msa0829130:CDS |
| TCTGTGAAAGTTCGAAGTAC+AGG | 0.531677 | 5_4:+2079005 | None:intergenic |
| TCTGGTTCAGCTCCTTGTAG+TGG | 0.532299 | 5_4:+2083114 | None:intergenic |
| TTACTATGTTAGATTTCAGA+AGG | 0.535320 | 5_4:-2082605 | Msa0829130:CDS |
| ACCCAGAATTGGAATCTCAA+TGG | 0.539803 | 5_4:+2082882 | None:intergenic |
| AGCCATAACTTTAGTTCCAT+CGG | 0.542345 | 5_4:+2078980 | None:intergenic |
| GAGCACTGGTGGTGCAGCTG+GGG | 0.547443 | 5_4:-2082797 | Msa0829130:CDS |
| TGAACAACGCTAAGAGAGAA+AGG | 0.548980 | 5_4:+2083145 | None:intergenic |
| CCACTTTGGGCCGACAATGG+AGG | 0.549557 | 5_4:-2083033 | Msa0829130:CDS |
| AACCTTCACCTGGTTGAAGA+GGG | 0.550922 | 5_4:+2083067 | None:intergenic |
| ATGGTGAGATCAGTGAGAGT+TGG | 0.553098 | 5_4:+2082901 | None:intergenic |
| TAACCTTCACCTGGTTGAAG+AGG | 0.554679 | 5_4:+2083066 | None:intergenic |
| TTTCCACTTTGGGCCGACAA+TGG | 0.555677 | 5_4:-2083036 | Msa0829130:CDS |
| CATAAAGCACCAGGAACAGA+AGG | 0.559372 | 5_4:+2079032 | None:intergenic |
| TTAGCAAGTTCAAGATTGAG+AGG | 0.571309 | 5_4:-2082768 | Msa0829130:CDS |
| TTCAACACAAAGCCACTACA+AGG | 0.573110 | 5_4:-2083126 | Msa0829130:CDS |
| CCTCCATTGTCGGCCCAAAG+TGG | 0.575834 | 5_4:+2083033 | None:intergenic |
| AACCCTCTTCAACCAGGTGA+AGG | 0.586328 | 5_4:-2083069 | Msa0829130:CDS |
| TTATTATGTTAGGTTTCAGA+GGG | 0.588270 | 5_4:-2078937 | Msa0829130:CDS |
| CAAGGTAACCCTCTTCAACC+AGG | 0.592964 | 5_4:-2083075 | Msa0829130:CDS |
| GGAACTAAAGTTATGGCTGT+TGG | 0.601998 | 5_4:-2082646 | Msa0829130:CDS |
| ATTTAGGAGTAGTCCATGCA+AGG | 0.602235 | 5_4:-2079204 | Msa0829130:CDS |
| CGAACTTTCACAGATACCGA+TGG | 0.603909 | 5_4:-2078996 | Msa0829130:CDS |
| AAAGTTATGGCTGTTGGTGA+TGG | 0.608662 | 5_4:-2082640 | Msa0829130:CDS |
| GGAACTAAAGTTATGGCTGT+TGG | 0.610334 | 5_4:-2078975 | Msa0829130:CDS |
| ACAGGAGCACAAAGAACACC+AGG | 0.612028 | 5_4:+2082691 | None:intergenic |
| TGAACTTGCTAACAACATCC+CGG | 0.616709 | 5_4:+2079111 | None:intergenic |
| AGAAGCTTGAAGGAGACACT+GGG | 0.630105 | 5_4:-2079082 | Msa0829130:CDS |
| ACAGGAGCACATAAAGCACC+AGG | 0.639247 | 5_4:+2079023 | None:intergenic |
| CTGGTGTGCCAATTGCATCA+GGG | 0.645208 | 5_4:+2082956 | None:intergenic |
| CTTGCAATGAACCAAAAGTG+TGG | 0.645641 | 5_4:-2082855 | Msa0829130:CDS |
| ACTACAAGGAGCTGAACCAG+AGG | 0.651073 | 5_4:-2083112 | Msa0829130:CDS |
| GGGTTACGGATTACGTCAAG+AGG | 0.654762 | 5_4:+2082976 | None:intergenic |
| AATACATAATAACCTTCACC+TGG | 0.663956 | 5_4:+2083057 | None:intergenic |
| GAGGCAGTAGTAGACAAACA+AGG | 0.729599 | 5_4:-2083093 | Msa0829130:CDS |
| GAGACAGTAGTAGACAGACA+CGG | 0.757552 | 5_4:-2079430 | Msa0829130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTGTTTTTTTTTTTTT+TGG | - | chr5_4:2081701-2081720 | Msa0829130:intron | 10.0% |
| !! | TTTATTAACTTTACTAAAAA+AGG | - | chr5_4:2082322-2082341 | Msa0829130:intron | 10.0% |
| !! | TTTACTAAAAATAAAGAGAA+AGG | - | chr5_4:2079939-2079958 | Msa0829130:intron | 15.0% |
| !! | TTACTAAAAATAAAGAGAAA+GGG | - | chr5_4:2079940-2079959 | Msa0829130:intron | 15.0% |
| !! | AATAATAATAAAATAACACG+TGG | + | chr5_4:2080233-2080252 | None:intergenic | 15.0% |
| !!! | TTTATTATTATTTTTGGCTT+TGG | - | chr5_4:2080241-2080260 | Msa0829130:intron | 15.0% |
| !!! | TTATTATTATTTTTGGCTTT+GGG | - | chr5_4:2080242-2080261 | Msa0829130:intron | 15.0% |
| !!! | TTTCTAACATTAACTTTTAT+CGG | - | chr5_4:2080395-2080414 | Msa0829130:intron | 15.0% |
| !! | TTTCTCATTTATTTATACTA+TGG | + | chr5_4:2081083-2081102 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATAACAAATCAA+TGG | + | chr5_4:2081594-2081613 | None:intergenic | 15.0% |
| !! | AATATTAATATTACGTATCA+AGG | + | chr5_4:2081827-2081846 | None:intergenic | 15.0% |
| !! | TTATTATGTATTTCCACTTT+GGG | - | chr5_4:2079027-2079046 | Msa0829130:CDS | 20.0% |
| !! | AAGATATAGTAAAGTTGAAA+TGG | - | chr5_4:2079886-2079905 | Msa0829130:intron | 20.0% |
| !! | TACTAAAAATAAAGAGAAAG+GGG | - | chr5_4:2079941-2079960 | Msa0829130:intron | 20.0% |
| !! | TAACTAGTGTTAATAATGTT+AGG | - | chr5_4:2080044-2080063 | Msa0829130:intron | 20.0% |
| !! | AACTAGTGTTAATAATGTTA+GGG | - | chr5_4:2080045-2080064 | Msa0829130:intron | 20.0% |
| !!! | GTTTTGTAACTTTTTTTCTT+AGG | + | chr5_4:2080121-2080140 | None:intergenic | 20.0% |
| !!! | TATTATTATTTTTGGCTTTG+GGG | - | chr5_4:2080243-2080262 | Msa0829130:intron | 20.0% |
| !!! | CATTATTTTTAGCTAACATT+AGG | + | chr5_4:2080349-2080368 | None:intergenic | 20.0% |
| !! | CTAATGTTAGCTAAAAATAA+TGG | - | chr5_4:2080347-2080366 | Msa0829130:intron | 20.0% |
| !! | TATAACTAGTTAGAGAATTA+AGG | + | chr5_4:2080760-2080779 | None:intergenic | 20.0% |
| !! | AAAAAAAAATGGAATTTCGT+CGG | + | chr5_4:2081378-2081397 | None:intergenic | 20.0% |
| !! | TTGTTATAAAAAAAGTCCAA+TGG | - | chr5_4:2081599-2081618 | Msa0829130:intron | 20.0% |
| !! | TTCATTAAATTCATCTGTTA+TGG | + | chr5_4:2081997-2082016 | None:intergenic | 20.0% |
| !! | ATGAATAGTTCTTACTAATT+TGG | - | chr5_4:2082083-2082102 | Msa0829130:intron | 20.0% |
| !! | TTTCCATTAAAATTCGATTT+AGG | - | chr5_4:2082853-2082872 | Msa0829130:CDS | 20.0% |
| ! | GTTATTATGTATTTCCACTT+TGG | - | chr5_4:2079026-2079045 | Msa0829130:CDS | 25.0% |
| !!! | TTCTGAAATCTAACATAGTA+AGG | + | chr5_4:2079469-2079488 | None:intergenic | 25.0% |
| ! | TTACTATGTTAGATTTCAGA+AGG | - | chr5_4:2079468-2079487 | Msa0829130:intron | 25.0% |
| !!! | TTTTGAGGATAAAAAGAAAG+TGG | + | chr5_4:2079680-2079699 | None:intergenic | 25.0% |
| ! | GATATAGAAACAATGTGTAA+GGG | + | chr5_4:2079765-2079784 | None:intergenic | 25.0% |
| ! | AGATATAGAAACAATGTGTA+AGG | + | chr5_4:2079766-2079785 | None:intergenic | 25.0% |
| !!! | TTGTAACTTTTTTTCTTAGG+AGG | + | chr5_4:2080118-2080137 | None:intergenic | 25.0% |
| ! | AAAATGGATCATACATAAAG+TGG | + | chr5_4:2080442-2080461 | None:intergenic | 25.0% |
| ! | AAGTCACATCACTTAAAAAA+TGG | + | chr5_4:2080458-2080477 | None:intergenic | 25.0% |
| !!! | TTGTATTACTGGTTTTAAAG+TGG | - | chr5_4:2080548-2080567 | Msa0829130:intron | 25.0% |
| !!! | TGTATTACTGGTTTTAAAGT+GGG | - | chr5_4:2080549-2080568 | Msa0829130:intron | 25.0% |
| ! | AACTAATGTAATTGAAAGGA+TGG | + | chr5_4:2080793-2080812 | None:intergenic | 25.0% |
| ! | GGAAAACTAATGTAATTGAA+AGG | + | chr5_4:2080797-2080816 | None:intergenic | 25.0% |
| ! | TATCTTTGAATCAAACGTTA+GGG | + | chr5_4:2080818-2080837 | None:intergenic | 25.0% |
| ! | TATTTAGAGAAAATCTTGTG+TGG | + | chr5_4:2081246-2081265 | None:intergenic | 25.0% |
| !! | TTTTATAGTAAACTAATCCC+TGG | - | chr5_4:2081398-2081417 | Msa0829130:intron | 25.0% |
| !! | GATTTGGAACATTATAACAT+GGG | + | chr5_4:2081476-2081495 | None:intergenic | 25.0% |
| ! | TTAATGAATGAATAGAGAAG+AGG | - | chr5_4:2082009-2082028 | Msa0829130:intron | 25.0% |
| ! | TTAAAATGACCTACTATAGT+AGG | + | chr5_4:2082406-2082425 | None:intergenic | 25.0% |
| !!! | ACTATAGTAGGTCATTTTAA+TGG | - | chr5_4:2082406-2082425 | Msa0829130:intron | 25.0% |
| !! | TTACTATGTATGGCAATTTT+GGG | - | chr5_4:2082690-2082709 | Msa0829130:CDS | 25.0% |
| !! | ACTCCTAAATCGAATTTTAA+TGG | + | chr5_4:2082859-2082878 | None:intergenic | 25.0% |
| ! | CAGAACTTAAAGATATAGAT+TGG | + | chr5_4:2083020-2083039 | None:intergenic | 25.0% |
| ! | ATCTTGAACCTTATTATGTT+AGG | - | chr5_4:2083126-2083145 | Msa0829130:CDS | 25.0% |
| ! | TTATTATGTTAGGTTTCAGA+GGG | - | chr5_4:2083136-2083155 | Msa0829130:CDS | 25.0% |
| AATACATAATAACCTTCACC+TGG | + | chr5_4:2079019-2079038 | None:intergenic | 30.0% | |
| ! | TTTAAAAGTCTCCACACTTT+TGG | + | chr5_4:2079232-2079251 | None:intergenic | 30.0% |
| !! | AAAAGTGTGGAGACTTTTAA+AGG | - | chr5_4:2079231-2079250 | Msa0829130:CDS | 30.0% |
| TACTGATGGAACTAAAGTTA+TGG | - | chr5_4:2079420-2079439 | Msa0829130:CDS | 30.0% | |
| ! | TGCATTTTTGTGGCTTATTA+TGG | + | chr5_4:2079622-2079641 | None:intergenic | 30.0% |
| ! | CAAACTTCATTAGACTTTTG+AGG | + | chr5_4:2079695-2079714 | None:intergenic | 30.0% |
| AGACAGATTGTATAAGCAAA+AGG | + | chr5_4:2079719-2079738 | None:intergenic | 30.0% | |
| !!! | TTTTCAAAAGAACTTGCTGA+TGG | + | chr5_4:2079794-2079813 | None:intergenic | 30.0% |
| TTAAGAACTAACGATAGAAG+TGG | + | chr5_4:2079841-2079860 | None:intergenic | 30.0% | |
| ! | CTTAATTGTCTCTGTTCTTT+TGG | - | chr5_4:2079856-2079875 | Msa0829130:intron | 30.0% |
| AAAGTTGAAATGGTCAATAG+AGG | - | chr5_4:2079896-2079915 | Msa0829130:intron | 30.0% | |
| AAGTTGAAATGGTCAATAGA+GGG | - | chr5_4:2079897-2079916 | Msa0829130:intron | 30.0% | |
| AGTAAAAATCTTACTCGAGT+TGG | + | chr5_4:2079925-2079944 | None:intergenic | 30.0% | |
| TCGCAACTTAGAAAAAGTTA+GGG | + | chr5_4:2080089-2080108 | None:intergenic | 30.0% | |
| ATCGCAACTTAGAAAAAGTT+AGG | + | chr5_4:2080090-2080109 | None:intergenic | 30.0% | |
| !! | TGAATGTTAGCTTGTATTAC+TGG | - | chr5_4:2080537-2080556 | Msa0829130:intron | 30.0% |
| !!! | GTATTACTGGTTTTAAAGTG+GGG | - | chr5_4:2080550-2080569 | Msa0829130:intron | 30.0% |
| AATGTAATTGAAAGGATGGA+AGG | + | chr5_4:2080789-2080808 | None:intergenic | 30.0% | |
| CTATCTTTGAATCAAACGTT+AGG | + | chr5_4:2080819-2080838 | None:intergenic | 30.0% | |
| CTAACGTTTGATTCAAAGAT+AGG | - | chr5_4:2080817-2080836 | Msa0829130:intron | 30.0% | |
| ! | GTGATGTGTATATTCCTTTT+GGG | - | chr5_4:2080839-2080858 | Msa0829130:intron | 30.0% |
| ! | TGATGTGTATATTCCTTTTG+GGG | - | chr5_4:2080840-2080859 | Msa0829130:intron | 30.0% |
| ! | TTGCTATACATTTTGCTTTC+TGG | - | chr5_4:2080924-2080943 | Msa0829130:intron | 30.0% |
| ! | TGCTATACATTTTGCTTTCT+GGG | - | chr5_4:2080925-2080944 | Msa0829130:intron | 30.0% |
| ATAAATGAGAAACACTTGTG+TGG | - | chr5_4:2081091-2081110 | Msa0829130:intron | 30.0% | |
| ATTACAAATTTGATATCCCG+TGG | + | chr5_4:2081301-2081320 | None:intergenic | 30.0% | |
| ! | CGATTTGGAACATTATAACA+TGG | + | chr5_4:2081477-2081496 | None:intergenic | 30.0% |
| TTAGTTTAACGTTAGAGACA+CGG | + | chr5_4:2081510-2081529 | None:intergenic | 30.0% | |
| TGTCTCTAACGTTAAACTAA+TGG | - | chr5_4:2081510-2081529 | Msa0829130:intron | 30.0% | |
| ATCAATGGCTAACATTCAAT+GGG | + | chr5_4:2081579-2081598 | None:intergenic | 30.0% | |
| AATCAATGGCTAACATTCAA+TGG | + | chr5_4:2081580-2081599 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGCAGAATGC+TGG | - | chr5_4:2081712-2081731 | Msa0829130:intron | 30.0% |
| !!! | TTTTTTTTTGGCAGAATGCT+GGG | - | chr5_4:2081713-2081732 | Msa0829130:intron | 30.0% |
| TGTGAAAGAATGTTAATCTG+TGG | - | chr5_4:2081786-2081805 | Msa0829130:intron | 30.0% | |
| ! | GTGGAAATCATTTTGAATCT+TGG | - | chr5_4:2082228-2082247 | Msa0829130:intron | 30.0% |
| ! | ATTTTGAATCTTGGATCTGA+GGG | - | chr5_4:2082237-2082256 | Msa0829130:intron | 30.0% |
| AAAAAACCATGTTTCTCTCT+TGG | + | chr5_4:2082293-2082312 | None:intergenic | 30.0% | |
| !!! | AATCCCATGTTTTTTTGTTG+TGG | - | chr5_4:2082349-2082368 | Msa0829130:intron | 30.0% |
| ACACCACAACAAAAAAACAT+GGG | + | chr5_4:2082355-2082374 | None:intergenic | 30.0% | |
| ! | AACACGAGGTTATTAGTTTA+GGG | + | chr5_4:2082474-2082493 | None:intergenic | 30.0% |
| ! | TAACACGAGGTTATTAGTTT+AGG | + | chr5_4:2082475-2082494 | None:intergenic | 30.0% |
| ! | TGTGTTTTTCTACGTTAACT+CGG | + | chr5_4:2082516-2082535 | None:intergenic | 30.0% |
| ATTCTTTCTCTAGTTGTTTG+TGG | + | chr5_4:2082555-2082574 | None:intergenic | 30.0% | |
| ! | GTTACTATGTATGGCAATTT+TGG | - | chr5_4:2082689-2082708 | Msa0829130:CDS | 30.0% |
| TGATATTGGAGGTTTAACAT+TGG | - | chr5_4:2082717-2082736 | Msa0829130:CDS | 30.0% | |
| GATATTGGAGGTTTAACATT+GGG | - | chr5_4:2082718-2082737 | Msa0829130:CDS | 30.0% | |
| ATGGAAATATCAGTTTGAGT+TGG | + | chr5_4:2082840-2082859 | None:intergenic | 30.0% | |
| AAGCTTTCAAAAGAAGGATA+TGG | - | chr5_4:2082906-2082925 | Msa0829130:CDS | 30.0% | |
| !! | CTCTGAAACCTAACATAATA+AGG | + | chr5_4:2083137-2083156 | None:intergenic | 30.0% |
| CTTATTATGTTAGGTTTCAG+AGG | - | chr5_4:2083135-2083154 | Msa0829130:CDS | 30.0% | |
| TAATGTTATGCCTCCATTGT+CGG | + | chr5_4:2079053-2079072 | None:intergenic | 35.0% | |
| ACCATTGAGATTCCAATTCT+GGG | - | chr5_4:2079190-2079209 | Msa0829130:CDS | 35.0% | |
| !! | AGACTTTTAAAGGTTGGATC+TGG | - | chr5_4:2079241-2079260 | Msa0829130:CDS | 35.0% |
| !! | GACTTTTAAAGGTTGGATCT+GGG | - | chr5_4:2079242-2079261 | Msa0829130:CDS | 35.0% |
| TTAGCAAGTTCAAGATTGAG+AGG | - | chr5_4:2079305-2079324 | Msa0829130:intron | 35.0% | |
| GTATCTACAAAAGTTCCAAC+AGG | + | chr5_4:2079403-2079422 | None:intergenic | 35.0% | |
| ! | GGAACTTTTGTAGATACTGA+TGG | - | chr5_4:2079406-2079425 | Msa0829130:CDS | 35.0% |
| ! | ATTATTGCTCTGAGCAAAAG+TGG | + | chr5_4:2079497-2079516 | None:intergenic | 35.0% |
| !! | AAGTGTGATGGGTCATAATA+AGG | - | chr5_4:2079587-2079606 | Msa0829130:intron | 35.0% |
| ATGGGTCATAATAAGGATTG+CGG | - | chr5_4:2079594-2079613 | Msa0829130:intron | 35.0% | |
| ! | TCTGTTTGTGTGCATTTTTG+TGG | + | chr5_4:2079632-2079651 | None:intergenic | 35.0% |
| !!! | CAAAAGCATTTTAGCGATAC+TGG | - | chr5_4:2079971-2079990 | Msa0829130:intron | 35.0% |
| CGATACTGGATTGTTTATGT+TGG | - | chr5_4:2079985-2080004 | Msa0829130:intron | 35.0% | |
| !! | GATTGTTTATGTTGGTAGCT+TGG | - | chr5_4:2079993-2080012 | Msa0829130:intron | 35.0% |
| CGCAACTTAGAAAAAGTTAG+GGG | + | chr5_4:2080088-2080107 | None:intergenic | 35.0% | |
| !! | ACTGAGTCAAAATTGGTCTT+GGG | + | chr5_4:2080180-2080199 | None:intergenic | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | + | chr5_4:2080271-2080290 | None:intergenic | 35.0% |
| TGCTACAGTTGCAAAACTTA+GGG | - | chr5_4:2080275-2080294 | Msa0829130:intron | 35.0% | |
| ! | GGTGATGTGTATATTCCTTT+TGG | - | chr5_4:2080838-2080857 | Msa0829130:intron | 35.0% |
| ! | GATGTGTATATTCCTTTTGG+GGG | - | chr5_4:2080841-2080860 | Msa0829130:intron | 35.0% |
| ! | ATGTGTATATTCCTTTTGGG+GGG | - | chr5_4:2080842-2080861 | Msa0829130:intron | 35.0% |
| ACTGTTGTCATTATGGATCA+GGG | + | chr5_4:2081046-2081065 | None:intergenic | 35.0% | |
| TACTGTTGTCATTATGGATC+AGG | + | chr5_4:2081047-2081066 | None:intergenic | 35.0% | |
| ! | GACAAGTACTGTTGTCATTA+TGG | + | chr5_4:2081053-2081072 | None:intergenic | 35.0% |
| TGTGACCAAACCAAAATTCT+TGG | + | chr5_4:2081213-2081232 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr5_4:2081213-2081232 | Msa0829130:intron | 35.0% | |
| !!! | CAAGACCAAGAATTTTGGTT+TGG | + | chr5_4:2081221-2081240 | None:intergenic | 35.0% |
| CAAACCAAAATTCTTGGTCT+TGG | - | chr5_4:2081219-2081238 | Msa0829130:intron | 35.0% | |
| AAATTTGATATCCCGTGGAT+GGG | + | chr5_4:2081296-2081315 | None:intergenic | 35.0% | |
| ! | AGAGCATCTCTTATGCAAAA+TGG | + | chr5_4:2081331-2081350 | None:intergenic | 35.0% |
| AAAAAATGGAATTTCGTCGG+TGG | + | chr5_4:2081375-2081394 | None:intergenic | 35.0% | |
| TTGGAACATTATAACATGGG+TGG | + | chr5_4:2081473-2081492 | None:intergenic | 35.0% | |
| AATTTGCACCACTAGAACTT+TGG | - | chr5_4:2081541-2081560 | Msa0829130:intron | 35.0% | |
| ATTTGCACCACTAGAACTTT+GGG | - | chr5_4:2081542-2081561 | Msa0829130:intron | 35.0% | |
| AGTCCAATGGTGTAGATTAA+AGG | - | chr5_4:2081612-2081631 | Msa0829130:intron | 35.0% | |
| CTACCTTTAATCTACACCAT+TGG | + | chr5_4:2081618-2081637 | None:intergenic | 35.0% | |
| CAATGGTGTAGATTAAAGGT+AGG | - | chr5_4:2081616-2081635 | Msa0829130:intron | 35.0% | |
| !!! | GGTTTTGTTGAATTGTTGCT+GGG | - | chr5_4:2081734-2081753 | Msa0829130:intron | 35.0% |
| TGAATAGAGAAGAGGTTACA+AGG | - | chr5_4:2082017-2082036 | Msa0829130:intron | 35.0% | |
| ! | GTTTACATAGCACTTGTTAG+TGG | + | chr5_4:2082111-2082130 | None:intergenic | 35.0% |
| ! | CATTTTGAATCTTGGATCTG+AGG | - | chr5_4:2082236-2082255 | Msa0829130:intron | 35.0% |
| CACACCACAACAAAAAAACA+TGG | + | chr5_4:2082356-2082375 | None:intergenic | 35.0% | |
| !!! | TGTAGTGTTGCTTTTTAACC+TGG | - | chr5_4:2082374-2082393 | Msa0829130:intron | 35.0% |
| TACTATAGTAGGTAATGTCC+AGG | + | chr5_4:2082395-2082414 | None:intergenic | 35.0% | |
| TGGACATTACCTACTATAGT+AGG | - | chr5_4:2082394-2082413 | Msa0829130:intron | 35.0% | |
| !! | GTCATTTTAATGGTCCAAGT+TGG | - | chr5_4:2082416-2082435 | Msa0829130:intron | 35.0% |
| ! | AGTTTAGGGTGCATTTAGTT+TGG | + | chr5_4:2082460-2082479 | None:intergenic | 35.0% |
| TTTATGGTCAATGTAACACG+AGG | + | chr5_4:2082488-2082507 | None:intergenic | 35.0% | |
| ! | GTGTTTTTCTACGTTAACTC+GGG | + | chr5_4:2082515-2082534 | None:intergenic | 35.0% |
| ATGTTTCCTAATCTCTCTCT+TGG | - | chr5_4:2082590-2082609 | Msa0829130:CDS | 35.0% | |
| CAGGAAAAGGTTACTATGTA+TGG | - | chr5_4:2082680-2082699 | Msa0829130:CDS | 35.0% | |
| ! | CAATTTTGGGCTGATGATAT+TGG | - | chr5_4:2082703-2082722 | Msa0829130:CDS | 35.0% |
| AATTCGTACCCTAAAGAACT+CGG | - | chr5_4:2082774-2082793 | Msa0829130:CDS | 35.0% | |
| ! | GTTGGAATGTGTTTAAAACC+TGG | + | chr5_4:2082822-2082841 | None:intergenic | 35.0% |
| GTGTTGAAGCTTTCAAAAGA+AGG | - | chr5_4:2082900-2082919 | Msa0829130:CDS | 35.0% | |
| CAAAAGAAGGATATGGATTC+TGG | - | chr5_4:2082913-2082932 | Msa0829130:CDS | 35.0% | |
| TTCAAGATTGAGAAGCTTGA+AGG | - | chr5_4:2082981-2083000 | Msa0829130:CDS | 35.0% | |
| TACCGATGGAACTAAAGTTA+TGG | - | chr5_4:2083091-2083110 | Msa0829130:CDS | 35.0% | |
| ! | AGCCATAACTTTAGTTCCAT+CGG | + | chr5_4:2079425-2079444 | None:intergenic | 35.0% |
| !! | GATCTTCTTTGGAGTAAAAG+TGG | + | chr5_4:2083165-2083184 | None:intergenic | 35.0% |
| TGAACAACGCTAAGAGAGAA+AGG | + | chr5_4:2078931-2078950 | None:intergenic | 40.0% | |
| TTCAACACAAAGCCACTACA+AGG | - | chr5_4:2078947-2078966 | Msa0829130:CDS | 40.0% | |
| ! | GACAATGGAGGCATAACATT+AGG | - | chr5_4:2079052-2079071 | Msa0829130:CDS | 40.0% |
| CCTGATGCAGAGAAATAAAC+TGG | + | chr5_4:2079139-2079158 | None:intergenic | 40.0% | |
| ! | CCAGTTTATTTCTCTGCATC+AGG | - | chr5_4:2079136-2079155 | Msa0829130:CDS | 40.0% |
| CACCATTGAGATTCCAATTC+TGG | - | chr5_4:2079189-2079208 | Msa0829130:CDS | 40.0% | |
| ACCCAGAATTGGAATCTCAA+TGG | + | chr5_4:2079194-2079213 | None:intergenic | 40.0% | |
| !!! | CACACTTTTGGTTCATTGCA+AGG | + | chr5_4:2079220-2079239 | None:intergenic | 40.0% |
| CTTGCAATGAACCAAAAGTG+TGG | - | chr5_4:2079218-2079237 | Msa0829130:CDS | 40.0% | |
| !! | GTGTGGAGACTTTTAAAGGT+TGG | - | chr5_4:2079235-2079254 | Msa0829130:CDS | 40.0% |
| ! | TAAAGGTTGGATCTGGGTTT+TGG | - | chr5_4:2079248-2079267 | Msa0829130:CDS | 40.0% |
| GGAACTAAAGTTATGGCTGT+TGG | - | chr5_4:2079427-2079446 | Msa0829130:CDS | 40.0% | |
| ! | AAAGTTATGGCTGTTGGTGA+TGG | - | chr5_4:2079433-2079452 | Msa0829130:CDS | 40.0% |
| TGCTTAGTAGTGAAGTGTGA+TGG | - | chr5_4:2079575-2079594 | Msa0829130:intron | 40.0% | |
| GCTTAGTAGTGAAGTGTGAT+GGG | - | chr5_4:2079576-2079595 | Msa0829130:intron | 40.0% | |
| ! | TTTTGCACCTGTGACAGTTT+TGG | - | chr5_4:2080152-2080171 | Msa0829130:intron | 40.0% |
| !! | TGAGTCAAAATTGGTCTTGG+GGG | + | chr5_4:2080178-2080197 | None:intergenic | 40.0% |
| !! | CTGAGTCAAAATTGGTCTTG+GGG | + | chr5_4:2080179-2080198 | None:intergenic | 40.0% |
| ! | GACTGAGTCAAAATTGGTCT+TGG | + | chr5_4:2080181-2080200 | None:intergenic | 40.0% |
| AGCGTAGACTGAGTCAAAAT+TGG | + | chr5_4:2080187-2080206 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | - | chr5_4:2080274-2080293 | Msa0829130:intron | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr5_4:2080276-2080295 | Msa0829130:intron | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | - | chr5_4:2080277-2080296 | Msa0829130:intron | 40.0% | |
| GCAACTTCGTGAAAGTTAGA+GGG | - | chr5_4:2080306-2080325 | Msa0829130:intron | 40.0% | |
| CATAGTTCCATGCATGCAAT+CGG | - | chr5_4:2080640-2080659 | Msa0829130:intron | 40.0% | |
| GCATTGTGTCTAACACAAGT+TGG | - | chr5_4:2080710-2080729 | Msa0829130:intron | 40.0% | |
| TCATCTGAGAGCAGAACATA+TGG | - | chr5_4:2080996-2081015 | Msa0829130:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr5_4:2081118-2081137 | None:intergenic | 40.0% | |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr5_4:2081116-2081135 | Msa0829130:intron | 40.0% |
| ! | TGGACCAAGACCAAGAATTT+TGG | + | chr5_4:2081226-2081245 | None:intergenic | 40.0% |
| AATTTGATATCCCGTGGATG+GGG | + | chr5_4:2081295-2081314 | None:intergenic | 40.0% | |
| CAAATTTGATATCCCGTGGA+TGG | + | chr5_4:2081297-2081316 | None:intergenic | 40.0% | |
| TAGTAAACTAATCCCTGGCA+TGG | - | chr5_4:2081403-2081422 | Msa0829130:intron | 40.0% | |
| AACATTCAATGGGTCCAAGT+TGG | + | chr5_4:2081569-2081588 | None:intergenic | 40.0% | |
| GAGGAATCAACTTGCATCTT+TGG | + | chr5_4:2081645-2081664 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGTTGAATTGTTGC+TGG | - | chr5_4:2081733-2081752 | Msa0829130:intron | 40.0% |
| ! | TTGAATTGTTGCTGGGCTTT+TGG | - | chr5_4:2081741-2081760 | Msa0829130:intron | 40.0% |
| ! | TGAATTGTTGCTGGGCTTTT+GGG | - | chr5_4:2081742-2081761 | Msa0829130:intron | 40.0% |
| TCTGACTTCTTACAAGAGCA+AGG | + | chr5_4:2081971-2081990 | None:intergenic | 40.0% | |
| ATAGAGAAGAGGTTACAAGG+AGG | - | chr5_4:2082020-2082039 | Msa0829130:intron | 40.0% | |
| CTGTAACTGTAATGACACAG+AGG | + | chr5_4:2082058-2082077 | None:intergenic | 40.0% | |
| AAGTGCTATGTAAACTCAGC+TGG | - | chr5_4:2082116-2082135 | Msa0829130:intron | 40.0% | |
| TATGTAAACTCAGCTGGTGT+TGG | - | chr5_4:2082122-2082141 | Msa0829130:intron | 40.0% | |
| !! | ACTGTGCTGACTCAAGTATA+TGG | - | chr5_4:2082150-2082169 | Msa0829130:intron | 40.0% |
| ! | ATGTTTTCACGACCAACAAC+TGG | - | chr5_4:2082194-2082213 | Msa0829130:intron | 40.0% |
| ACACAACCAAGAGAGAAACA+TGG | - | chr5_4:2082284-2082303 | Msa0829130:intron | 40.0% | |
| GTTTGGACCACCAATTGTTT+GGG | + | chr5_4:2082443-2082462 | None:intergenic | 40.0% | |
| AGTTTGGACCACCAATTGTT+TGG | + | chr5_4:2082444-2082463 | None:intergenic | 40.0% | |
| ! | TAACCTTTTCCTGACTCAAG+AGG | + | chr5_4:2082673-2082692 | None:intergenic | 40.0% |
| ! | TTTTGGGCTGATGATATTGG+AGG | - | chr5_4:2082706-2082725 | Msa0829130:CDS | 40.0% |
| AGGGTACGAATTACATCAAG+AGG | + | chr5_4:2082766-2082785 | None:intergenic | 40.0% | |
| ATTTAGGAGTAGTCCATGCA+AGG | - | chr5_4:2082869-2082888 | Msa0829130:CDS | 40.0% | |
| !! | AACACTTTTGACTCCTTGCA+TGG | + | chr5_4:2082885-2082904 | None:intergenic | 40.0% |
| !! | TGAACTTGCTAACAACATCC+CGG | + | chr5_4:2082965-2082984 | None:intergenic | 40.0% |
| TCTGTGAAAGTTCGAAGTAC+AGG | + | chr5_4:2083071-2083090 | None:intergenic | 40.0% | |
| GGAACTAAAGTTATGGCTGT+TGG | - | chr5_4:2079427-2079446 | Msa0829130:CDS | 40.0% | |
| TGTTTGTCTACTACTGCCTC+TGG | + | chr5_4:2078980-2078999 | None:intergenic | 45.0% | |
| GAGGCAGTAGTAGACAAACA+AGG | - | chr5_4:2078980-2078999 | Msa0829130:CDS | 45.0% | |
| AACCTTCACCTGGTTGAAGA+GGG | + | chr5_4:2079009-2079028 | None:intergenic | 45.0% | |
| TAACCTTCACCTGGTTGAAG+AGG | + | chr5_4:2079010-2079029 | None:intergenic | 45.0% | |
| ATCCGTAACCCTGATGCAAT+TGG | - | chr5_4:2079109-2079128 | Msa0829130:CDS | 45.0% | |
| TGCCAATTGCATCAGGGTTA+CGG | + | chr5_4:2079114-2079133 | None:intergenic | 45.0% | |
| ATGGTGAGATCAGTGAGAGT+TGG | + | chr5_4:2079175-2079194 | None:intergenic | 45.0% | |
| TTGCAAGGACTACCCAGAAT+TGG | + | chr5_4:2079205-2079224 | None:intergenic | 45.0% | |
| !!! | TTTTGGTTTGTGAGCACTGG+TGG | - | chr5_4:2079265-2079284 | Msa0829130:intron | 45.0% |
| TTCAAGATTGAGAGGCTTGC+AGG | - | chr5_4:2079313-2079332 | Msa0829130:intron | 45.0% | |
| AAGTTCTGTCCTTCTGTTCC+TGG | - | chr5_4:2079364-2079383 | Msa0829130:intron | 45.0% | |
| CAAAGAACACCAGGAACAGA+AGG | + | chr5_4:2079376-2079395 | None:intergenic | 45.0% | |
| TCACAGGTGCAAAACTTAGG+AGG | + | chr5_4:2080146-2080165 | None:intergenic | 45.0% | |
| CTGTCACAGGTGCAAAACTT+AGG | + | chr5_4:2080149-2080168 | None:intergenic | 45.0% | |
| AACACGTGGCACCTTTCTTA+GGG | + | chr5_4:2080219-2080238 | None:intergenic | 45.0% | |
| TAACACGTGGCACCTTTCTT+AGG | + | chr5_4:2080220-2080239 | None:intergenic | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+AGG | - | chr5_4:2080305-2080324 | Msa0829130:intron | 45.0% | |
| GATGTATCCGATTGCATGCA+TGG | + | chr5_4:2080650-2080669 | None:intergenic | 45.0% | |
| !! | TGTATATTCCTTTTGGGGGG+TGG | - | chr5_4:2080845-2080864 | Msa0829130:intron | 45.0% |
| !! | GTATATTCCTTTTGGGGGGT+GGG | - | chr5_4:2080846-2080865 | Msa0829130:intron | 45.0% |
| TTGCTTTCTGGGTGTGAACA+CGG | - | chr5_4:2080936-2080955 | Msa0829130:intron | 45.0% | |
| CTGCTCTCAGATGATGAATG+TGG | + | chr5_4:2080990-2081009 | None:intergenic | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr5_4:2081111-2081130 | Msa0829130:intron | 45.0% |
| GAGAGAAGAGAAGAGAGAGA+AGG | + | chr5_4:2081162-2081181 | None:intergenic | 45.0% | |
| TTGCTATGAGTTCCATGCCA+GGG | + | chr5_4:2081418-2081437 | None:intergenic | 45.0% | |
| !!! | CACGGCGTTTTGATTCGATT+TGG | + | chr5_4:2081492-2081511 | None:intergenic | 45.0% |
| ! | AGTTGGACCCAAAGTTCTAG+TGG | + | chr5_4:2081552-2081571 | None:intergenic | 45.0% |
| CTAGAACTTTGGGTCCAACT+TGG | - | chr5_4:2081552-2081571 | Msa0829130:intron | 45.0% | |
| ACTACATGTGAGCATGAGAG+AGG | + | chr5_4:2081664-2081683 | None:intergenic | 45.0% | |
| CTCTCATGCTCACATGTAGT+TGG | - | chr5_4:2081664-2081683 | Msa0829130:intron | 45.0% | |
| ! | GAATTGTTGCTGGGCTTTTG+GGG | - | chr5_4:2081743-2081762 | Msa0829130:intron | 45.0% |
| ! | AATTGTTGCTGGGCTTTTGG+GGG | - | chr5_4:2081744-2081763 | Msa0829130:intron | 45.0% |
| CAGATCCAATGTCCAGTTGT+TGG | + | chr5_4:2082209-2082228 | None:intergenic | 45.0% | |
| ACAACTGGACATTGGATCTG+TGG | - | chr5_4:2082209-2082228 | Msa0829130:intron | 45.0% | |
| CCAATTGTTTGGGTCCAACT+TGG | + | chr5_4:2082433-2082452 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGACCCAAACAAT+TGG | - | chr5_4:2082430-2082449 | Msa0829130:intron | 45.0% |
| AGTTGGACCCAAACAATTGG+TGG | - | chr5_4:2082433-2082452 | Msa0829130:intron | 45.0% | |
| CGTTAACTCGGGCATGTTTA+TGG | + | chr5_4:2082504-2082523 | None:intergenic | 45.0% | |
| GCAACACCAAGAGAGAGATT+AGG | + | chr5_4:2082599-2082618 | None:intergenic | 45.0% | |
| !! | TGGTGTTGCTCAACACTACA+AGG | - | chr5_4:2082610-2082629 | Msa0829130:CDS | 45.0% |
| TGTCTGTCTACTACTGTCTC+TGG | + | chr5_4:2082643-2082662 | None:intergenic | 45.0% | |
| GAGACAGTAGTAGACAGACA+CGG | - | chr5_4:2082643-2082662 | Msa0829130:CDS | 45.0% | |
| AAGCCTCTTGAGTCAGGAAA+AGG | - | chr5_4:2082667-2082686 | Msa0829130:CDS | 45.0% | |
| AGAAGCTTGAAGGAGACACT+GGG | - | chr5_4:2082991-2083010 | Msa0829130:CDS | 45.0% | |
| AAGTTCTGTCCTTCTGTTCC+TGG | - | chr5_4:2079364-2079383 | Msa0829130:intron | 45.0% | |
| ! | CATAAAGCACCAGGAACAGA+AGG | + | chr5_4:2083044-2083063 | None:intergenic | 45.0% |
| CGAACTTTCACAGATACCGA+TGG | - | chr5_4:2083077-2083096 | Msa0829130:CDS | 45.0% | |
| !!! | TGTTATTTTATTATTATTTT+TGG | - | chr5_4:2080235-2080254 | Msa0829130:intron | 5.0% |
| !! | TTACTATAAAAAAAAAAAAA+TGG | + | chr5_4:2081389-2081408 | None:intergenic | 5.0% |
| ! | TCTGGTTCAGCTCCTTGTAG+TGG | + | chr5_4:2078962-2078981 | None:intergenic | 50.0% |
| ACTACAAGGAGCTGAACCAG+AGG | - | chr5_4:2078961-2078980 | Msa0829130:CDS | 50.0% | |
| CAAGGTAACCCTCTTCAACC+AGG | - | chr5_4:2078998-2079017 | Msa0829130:CDS | 50.0% | |
| AACCCTCTTCAACCAGGTGA+AGG | - | chr5_4:2079004-2079023 | Msa0829130:CDS | 50.0% | |
| TTTCCACTTTGGGCCGACAA+TGG | - | chr5_4:2079037-2079056 | Msa0829130:CDS | 50.0% | |
| ! | GGGTTACGGATTACGTCAAG+AGG | + | chr5_4:2079100-2079119 | None:intergenic | 50.0% |
| CTGGTGTGCCAATTGCATCA+GGG | + | chr5_4:2079120-2079139 | None:intergenic | 50.0% | |
| ACTGGTGTGCCAATTGCATC+AGG | + | chr5_4:2079121-2079140 | None:intergenic | 50.0% | |
| !!! | GGGTTTTGGTTTGTGAGCAC+TGG | - | chr5_4:2079262-2079281 | Msa0829130:intron | 50.0% |
| ! | ACAGGAGCACAAAGAACACC+AGG | + | chr5_4:2079385-2079404 | None:intergenic | 50.0% |
| GGTGTTCTTTGTGCTCCTGT+TGG | - | chr5_4:2079385-2079404 | Msa0829130:CDS | 50.0% | |
| CAGGTGCAAAACTTAGGAGG+CGG | + | chr5_4:2080143-2080162 | None:intergenic | 50.0% | |
| CTGAGAGCAGAACATATGGC+AGG | - | chr5_4:2081000-2081019 | Msa0829130:intron | 50.0% | |
| ! | CAGGAGAGAAAGTGCAGCAT+AGG | - | chr5_4:2081019-2081038 | Msa0829130:intron | 50.0% |
| GAGAAACACTTGTGTGGACC+AGG | - | chr5_4:2081097-2081116 | Msa0829130:intron | 50.0% | |
| CAGTGAAGATACCCCATCCA+CGG | - | chr5_4:2081281-2081300 | Msa0829130:intron | 50.0% | |
| AGTGAAGATACCCCATCCAC+GGG | - | chr5_4:2081282-2081301 | Msa0829130:intron | 50.0% | |
| GTTGCTATGAGTTCCATGCC+AGG | + | chr5_4:2081419-2081438 | None:intergenic | 50.0% | |
| CACGACCAACAACTGGACAT+TGG | - | chr5_4:2082201-2082220 | Msa0829130:intron | 50.0% | |
| !! | GGATTCTGGTTTGTGAGCAC+TGG | - | chr5_4:2082927-2082946 | Msa0829130:CDS | 50.0% |
| !! | TTCTGGTTTGTGAGCACTGG+TGG | - | chr5_4:2082930-2082949 | Msa0829130:CDS | 50.0% |
| GAGAAGCTTGAAGGAGACAC+TGG | - | chr5_4:2082990-2083009 | Msa0829130:CDS | 50.0% | |
| ! | ACAGGAGCACATAAAGCACC+AGG | + | chr5_4:2083053-2083072 | None:intergenic | 50.0% |
| TTGGGGGCCAAAACTGTCAC+AGG | + | chr5_4:2080162-2080181 | None:intergenic | 55.0% | |
| TGACTCAGTCTACGCTGACG+TGG | - | chr5_4:2080191-2080210 | Msa0829130:intron | 55.0% | |
| CTGACGTGGCACCCTAAGAA+AGG | - | chr5_4:2080205-2080224 | Msa0829130:intron | 55.0% | |
| AACATCACCCACCCCCCAAA+AGG | + | chr5_4:2080856-2080875 | None:intergenic | 55.0% | |
| CACGGTAAGCCTCTTGAGTC+AGG | - | chr5_4:2082661-2082680 | Msa0829130:CDS | 55.0% | |
| CTGGCGAGCCGAGTTCTTTA+GGG | + | chr5_4:2082785-2082804 | None:intergenic | 55.0% | |
| ACTGGCGAGCCGAGTTCTTT+AGG | + | chr5_4:2082786-2082805 | None:intergenic | 55.0% | |
| ! | CCTGGTGCAGAGAAGTACAC+TGG | + | chr5_4:2082804-2082823 | None:intergenic | 55.0% |
| CCAGTGTACTTCTCTGCACC+AGG | - | chr5_4:2082801-2082820 | Msa0829130:CDS | 55.0% | |
| CCTCCATTGTCGGCCCAAAG+TGG | + | chr5_4:2079043-2079062 | None:intergenic | 60.0% | |
| CCACTTTGGGCCGACAATGG+AGG | - | chr5_4:2079040-2079059 | Msa0829130:CDS | 60.0% | |
| !! | TGAGCACTGGTGGTGCAGCT+GGG | - | chr5_4:2079275-2079294 | Msa0829130:intron | 60.0% |
| !! | GTGAGCACTGGTGGTGTAGC+TGG | - | chr5_4:2082939-2082958 | Msa0829130:CDS | 60.0% |
| !! | GTGAGCACTGGTGGTGCAGC+TGG | - | chr5_4:2079274-2079293 | Msa0829130:intron | 65.0% |
| !! | GAGCACTGGTGGTGCAGCTG+GGG | - | chr5_4:2079276-2079295 | Msa0829130:intron | 65.0% |
| ! | GCACTGGTGGTGTAGCTGGC+CGG | - | chr5_4:2082943-2082962 | Msa0829130:CDS | 65.0% |
| ! | CACTGGTGGTGTAGCTGGCC+GGG | - | chr5_4:2082944-2082963 | Msa0829130:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 2078902 | 2083193 | 2078902 | ID=Msa0829130;Name=Msa0829130 |
| chr5_4 | mRNA | 2078902 | 2083193 | 2078902 | ID=Msa0829130-mRNA-1;Parent=Msa0829130;Name=Msa0829130-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|3|0|364 |
| chr5_4 | exon | 2082566 | 2083193 | 2082566 | ID=Msa0829130-mRNA-1:exon:624;Parent=Msa0829130-mRNA-1 |
| chr5_4 | exon | 2079368 | 2079463 | 2079368 | ID=Msa0829130-mRNA-1:exon:623;Parent=Msa0829130-mRNA-1 |
| chr5_4 | exon | 2078902 | 2079272 | 2078902 | ID=Msa0829130-mRNA-1:exon:622;Parent=Msa0829130-mRNA-1 |
| chr5_4 | CDS | 2082566 | 2083193 | 2082566 | ID=Msa0829130-mRNA-1:cds;Parent=Msa0829130-mRNA-1 |
| chr5_4 | CDS | 2079368 | 2079463 | 2079368 | ID=Msa0829130-mRNA-1:cds;Parent=Msa0829130-mRNA-1 |
| chr5_4 | CDS | 2078902 | 2079272 | 2078902 | ID=Msa0829130-mRNA-1:cds;Parent=Msa0829130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
