Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476840 | XP_013461880.1 | 52.941 | 187 | 54 | 4 | 204 | 358 | 17 | 201 | 1.78e-49 | 176 |
| Msa0476840 | XP_013461880.1 | 98.086 | 209 | 4 | 0 | 1 | 209 | 1 | 209 | 4.31e-146 | 422 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476840 | sp|P32765|ASP_THECC | 35.238 | 210 | 109 | 11 | 6 | 198 | 11 | 210 | 1.01e-13 | 73.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476840 | A0A072VCP7 | 52.941 | 187 | 54 | 4 | 204 | 358 | 17 | 201 | 8.49e-50 | 176 |
| Msa0476840 | A0A072VCP7 | 98.086 | 209 | 4 | 0 | 1 | 209 | 1 | 209 | 2.06e-146 | 422 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0212300 | Msa0476840 | 0.810595 | 1.066034e-50 | -8.615850e-47 |
| Msa0432420 | Msa0476840 | 0.919180 | 6.210776e-87 | -8.615850e-47 |
| Msa0476840 | Msa0521210 | 0.907850 | 3.241921e-81 | -8.615850e-47 |
| Msa0476840 | Msa0714640 | 0.828973 | 6.672519e-55 | -8.615850e-47 |
| Msa0476840 | Msa0829130 | 0.999565 | 1.976263e-323 | -8.615850e-47 |
| Msa0476840 | Msa0893860 | 0.879263 | 1.437380e-69 | -8.615850e-47 |
| Msa0476840 | Msa0920520 | 0.836207 | 1.071255e-56 | -8.615850e-47 |
| Msa0476840 | Msa1031410 | 0.820044 | 8.442645e-53 | -8.615850e-47 |
| Msa0476840 | Msa1070500 | 0.800317 | 1.525154e-48 | -8.615850e-47 |
| Msa0476840 | Msa1101160 | 0.806568 | 7.724026e-50 | -8.615850e-47 |
| Msa0476840 | Msa1338540 | 0.805348 | 1.394346e-49 | -8.615850e-47 |
| Msa0476840 | Msa1367040 | 0.846465 | 2.134978e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476840 | MtrunA17_Chr3g0137421 | 98.086 | 209 | 4 | 0 | 1 | 209 | 1 | 209 | 3.96e-150 | 422 |
| Msa0476840 | MtrunA17_Chr3g0137421 | 52.941 | 187 | 54 | 4 | 204 | 358 | 17 | 201 | 1.63e-53 | 176 |
| Msa0476840 | MtrunA17_Chr3g0137441 | 81.517 | 211 | 37 | 1 | 1 | 209 | 1 | 211 | 1.76e-122 | 352 |
| Msa0476840 | MtrunA17_Chr3g0137441 | 48.958 | 192 | 62 | 6 | 204 | 361 | 17 | 206 | 7.93e-47 | 158 |
| Msa0476840 | MtrunA17_Chr3g0137411 | 66.667 | 207 | 67 | 2 | 1 | 205 | 1 | 207 | 3.07e-93 | 277 |
| Msa0476840 | MtrunA17_Chr3g0137411 | 73.196 | 194 | 16 | 4 | 204 | 363 | 17 | 208 | 4.08e-88 | 264 |
| Msa0476840 | MtrunA17_Chr6g0481911 | 34.555 | 191 | 100 | 8 | 24 | 197 | 21 | 203 | 4.58e-21 | 90.1 |
| Msa0476840 | MtrunA17_Chr6g0481911 | 29.255 | 188 | 82 | 6 | 211 | 353 | 21 | 202 | 2.29e-12 | 65.5 |
| Msa0476840 | MtrunA17_Chr6g0482041 | 33.482 | 224 | 112 | 11 | 1 | 198 | 1 | 213 | 2.53e-20 | 88.2 |
| Msa0476840 | MtrunA17_Chr6g0481941 | 34.197 | 193 | 100 | 8 | 24 | 197 | 21 | 205 | 4.51e-19 | 84.7 |
| Msa0476840 | MtrunA17_Chr6g0481941 | 37.719 | 114 | 59 | 4 | 246 | 353 | 97 | 204 | 6.67e-12 | 64.3 |
| Msa0476840 | MtrunA17_Chr6g0477741 | 35.429 | 175 | 89 | 11 | 6 | 169 | 13 | 174 | 7.49e-13 | 67.4 |
| Msa0476840 | MtrunA17_Chr7g0269461 | 30.000 | 180 | 112 | 8 | 27 | 196 | 25 | 200 | 1.11e-12 | 66.2 |
| Msa0476840 | MtrunA17_Chr6g0452521 | 31.818 | 176 | 103 | 8 | 4 | 169 | 39 | 207 | 6.78e-12 | 64.7 |
| Msa0476840 | MtrunA17_Chr6g0452491 | 31.325 | 166 | 95 | 7 | 6 | 162 | 13 | 168 | 2.62e-11 | 62.8 |
| Msa0476840 | MtrunA17_Chr6g0476921 | 29.570 | 186 | 109 | 8 | 27 | 198 | 26 | 203 | 2.76e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476840 | AT1G73260.1 | 33.659 | 205 | 111 | 12 | 9 | 198 | 12 | 206 | 3.40e-14 | 71.2 |
| Msa0476840 | AT1G17860.1 | 32.857 | 210 | 104 | 14 | 6 | 197 | 5 | 195 | 4.80e-14 | 70.5 |
| Msa0476840 | AT1G73330.1 | 31.638 | 177 | 105 | 9 | 29 | 199 | 28 | 194 | 1.77e-13 | 69.3 |
| Msa0476840 | AT1G73325.1 | 28.426 | 197 | 123 | 7 | 12 | 197 | 14 | 203 | 3.90e-11 | 62.8 |
Find 85 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTACTATGTATGGCAATTT+TGG | 0.086622 | 3_3:-80733547 | Msa0476840:CDS |
| CACCATTGAGATTCCAATTC+TGG | 0.167642 | 3_3:-80737047 | Msa0476840:CDS |
| CAAAAGAAGGATATGGATTC+TGG | 0.218105 | 3_3:-80733323 | Msa0476840:CDS |
| AAGTTCTGTCCTTCTGTTCC+TGG | 0.220195 | 3_3:-80736872 | Msa0476840:CDS |
| AAGTTCTGTCCTTCTGTTCC+TGG | 0.220895 | 3_3:-80733204 | Msa0476840:CDS |
| TTTCCATTAAAATTCGATTT+AGG | 0.236510 | 3_3:-80733383 | Msa0476840:CDS |
| TAAAGGTTGGATCTGGGTTT+TGG | 0.257005 | 3_3:-80736988 | Msa0476840:CDS |
| CTCTGAAACCTAACATAATA+AGG | 0.265710 | 3_3:+80733102 | None:intergenic |
| TTTAAAAGTCTCCACACTTT+TGG | 0.285295 | 3_3:+80737007 | None:intergenic |
| GTGAGCACTGGTGGTGCAGC+TGG | 0.296941 | 3_3:-80736962 | Msa0476840:CDS |
| TTCAAGATTGAGAGGCTTGC+AGG | 0.297937 | 3_3:-80736923 | Msa0476840:CDS |
| AAGCTTTCAAAAGAAGGATA+TGG | 0.314481 | 3_3:-80733330 | Msa0476840:CDS |
| AGTTACTCGATGATCTTCTT+TGG | 0.325762 | 3_3:+80733063 | None:intergenic |
| TTATTATGTATTTCCACTTT+GGG | 0.342016 | 3_3:-80737209 | Msa0476840:CDS |
| ATCTTGAACCTTATTATGTT+AGG | 0.347996 | 3_3:-80733110 | Msa0476840:CDS |
| CCAGTTTATTTCTCTGCATC+AGG | 0.372005 | 3_3:-80737100 | Msa0476840:CDS |
| TTGCAAGGACTACCCAGAAT+TGG | 0.380957 | 3_3:+80737034 | None:intergenic |
| GTTATTATGTATTTCCACTT+TGG | 0.390718 | 3_3:-80737210 | Msa0476840:CDS |
| CAGGAAAAGGTTACTATGTA+TGG | 0.395314 | 3_3:-80733556 | Msa0476840:CDS |
| ACTGGTGTGCCAATTGCATC+AGG | 0.400173 | 3_3:+80737118 | None:intergenic |
| TAATGTTATGCCTCCATTGT+CGG | 0.403372 | 3_3:+80737186 | None:intergenic |
| TTCAAGATTGAGAAGCTTGA+AGG | 0.408999 | 3_3:-80733255 | Msa0476840:CDS |
| TGCCAATTGCATCAGGGTTA+CGG | 0.410323 | 3_3:+80737125 | None:intergenic |
| CCTGATGCAGAGAAATAAAC+TGG | 0.432071 | 3_3:+80737100 | None:intergenic |
| CACTGGTGGTGTAGCTGGCC+GGG | 0.435680 | 3_3:-80733292 | Msa0476840:CDS |
| ACCATTGAGATTCCAATTCT+GGG | 0.437900 | 3_3:-80737046 | Msa0476840:CDS |
| CACGGTAAGCCTCTTGAGTC+AGG | 0.443286 | 3_3:-80733575 | Msa0476840:CDS |
| GTGAGCACTGGTGGTGTAGC+TGG | 0.443992 | 3_3:-80733297 | Msa0476840:CDS |
| TTCTGAAATCTAACATAGTA+AGG | 0.445442 | 3_3:+80736770 | None:intergenic |
| GGTGTTCTTTGTGCTCCTGT+TGG | 0.451041 | 3_3:-80736851 | Msa0476840:CDS |
| CAGAACTTAAAGATATAGAT+TGG | 0.456697 | 3_3:+80733219 | None:intergenic |
| TGTTTGTCTACTACTGCCTC+TGG | 0.457272 | 3_3:+80737259 | None:intergenic |
| ATGGAAATATCAGTTTGAGT+TGG | 0.463845 | 3_3:+80733399 | None:intergenic |
| GTGTTGAAGCTTTCAAAAGA+AGG | 0.466532 | 3_3:-80733336 | Msa0476840:CDS |
| ATCCGTAACCCTGATGCAAT+TGG | 0.467790 | 3_3:-80737127 | Msa0476840:CDS |
| GCACTGGTGGTGTAGCTGGC+CGG | 0.468361 | 3_3:-80733293 | Msa0476840:CDS |
| GATCTTCTTTGGAGTAAAAG+TGG | 0.474411 | 3_3:+80733074 | None:intergenic |
| ATTATTGCTCTGAGCAAAAG+TGG | 0.480580 | 3_3:+80736742 | None:intergenic |
| TGAGCACTGGTGGTGCAGCT+GGG | 0.484946 | 3_3:-80736961 | Msa0476840:CDS |
| CAAAGAACACCAGGAACAGA+AGG | 0.492794 | 3_3:+80736863 | None:intergenic |
| GACAATGGAGGCATAACATT+AGG | 0.494830 | 3_3:-80737184 | Msa0476840:CDS |
| GTATCTACAAAAGTTCCAAC+AGG | 0.500409 | 3_3:+80736836 | None:intergenic |
| GGATTCTGGTTTGTGAGCAC+TGG | 0.512011 | 3_3:-80733309 | Msa0476840:CDS |
| AAGCCTCTTGAGTCAGGAAA+AGG | 0.518855 | 3_3:-80733569 | Msa0476840:CDS |
| TACTGATGGAACTAAAGTTA+TGG | 0.520354 | 3_3:-80736816 | Msa0476840:CDS |
| TGTCTGTCTACTACTGTCTC+TGG | 0.520358 | 3_3:+80733596 | None:intergenic |
| TACCGATGGAACTAAAGTTA+TGG | 0.520475 | 3_3:-80733145 | Msa0476840:CDS |
| CTTATTATGTTAGGTTTCAG+AGG | 0.522266 | 3_3:-80733101 | Msa0476840:CDS |
| TTCTGGTTTGTGAGCACTGG+TGG | 0.523104 | 3_3:-80733306 | Msa0476840:CDS |
| GAGAAGCTTGAAGGAGACAC+TGG | 0.531287 | 3_3:-80733246 | Msa0476840:CDS |
| TCTGTGAAAGTTCGAAGTAC+AGG | 0.531677 | 3_3:+80733168 | None:intergenic |
| TCTGGTTCAGCTCCTTGTAG+TGG | 0.532299 | 3_3:+80737277 | None:intergenic |
| TTACTATGTTAGATTTCAGA+AGG | 0.535320 | 3_3:-80736768 | Msa0476840:CDS |
| ACCCAGAATTGGAATCTCAA+TGG | 0.539803 | 3_3:+80737045 | None:intergenic |
| AGCCATAACTTTAGTTCCAT+CGG | 0.542345 | 3_3:+80733143 | None:intergenic |
| GAGCACTGGTGGTGCAGCTG+GGG | 0.547443 | 3_3:-80736960 | Msa0476840:CDS |
| TGAACAACGCTAAGAGAGAA+AGG | 0.548980 | 3_3:+80737308 | None:intergenic |
| CCACTTTGGGCCGACAATGG+AGG | 0.549557 | 3_3:-80737196 | Msa0476840:CDS |
| AACCTTCACCTGGTTGAAGA+GGG | 0.550922 | 3_3:+80737230 | None:intergenic |
| ATGGTGAGATCAGTGAGAGT+TGG | 0.553098 | 3_3:+80737064 | None:intergenic |
| TAACCTTCACCTGGTTGAAG+AGG | 0.554679 | 3_3:+80737229 | None:intergenic |
| TTTCCACTTTGGGCCGACAA+TGG | 0.555677 | 3_3:-80737199 | Msa0476840:CDS |
| CATAAAGCACCAGGAACAGA+AGG | 0.559372 | 3_3:+80733195 | None:intergenic |
| TTAGCAAGTTCAAGATTGAG+AGG | 0.571309 | 3_3:-80736931 | Msa0476840:CDS |
| TTCAACACAAAGCCACTACA+AGG | 0.573110 | 3_3:-80737289 | Msa0476840:CDS |
| CCTCCATTGTCGGCCCAAAG+TGG | 0.575834 | 3_3:+80737196 | None:intergenic |
| AACCCTCTTCAACCAGGTGA+AGG | 0.586328 | 3_3:-80737232 | Msa0476840:CDS |
| TTATTATGTTAGGTTTCAGA+GGG | 0.588270 | 3_3:-80733100 | Msa0476840:CDS |
| CAAGGTAACCCTCTTCAACC+AGG | 0.592964 | 3_3:-80737238 | Msa0476840:CDS |
| GGAACTAAAGTTATGGCTGT+TGG | 0.601998 | 3_3:-80736809 | Msa0476840:CDS |
| ATTTAGGAGTAGTCCATGCA+AGG | 0.602235 | 3_3:-80733367 | Msa0476840:CDS |
| CGAACTTTCACAGATACCGA+TGG | 0.603909 | 3_3:-80733159 | Msa0476840:CDS |
| AAAGTTATGGCTGTTGGTGA+TGG | 0.608662 | 3_3:-80736803 | Msa0476840:CDS |
| GGAACTAAAGTTATGGCTGT+TGG | 0.610334 | 3_3:-80733138 | Msa0476840:CDS |
| ACAGGAGCACAAAGAACACC+AGG | 0.612028 | 3_3:+80736854 | None:intergenic |
| TGAACTTGCTAACAACATCC+CGG | 0.616709 | 3_3:+80733274 | None:intergenic |
| AGAAGCTTGAAGGAGACACT+GGG | 0.630105 | 3_3:-80733245 | Msa0476840:CDS |
| ACAGGAGCACATAAAGCACC+AGG | 0.639247 | 3_3:+80733186 | None:intergenic |
| CTGGTGTGCCAATTGCATCA+GGG | 0.645208 | 3_3:+80737119 | None:intergenic |
| CTTGCAATGAACCAAAAGTG+TGG | 0.645641 | 3_3:-80737018 | Msa0476840:CDS |
| ACTACAAGGAGCTGAACCAG+AGG | 0.651073 | 3_3:-80737275 | Msa0476840:CDS |
| GGGTTACGGATTACGTCAAG+AGG | 0.654762 | 3_3:+80737139 | None:intergenic |
| AATACATAATAACCTTCACC+TGG | 0.663956 | 3_3:+80737220 | None:intergenic |
| GAGGCAGTAGTAGACAAACA+AGG | 0.729599 | 3_3:-80737256 | Msa0476840:CDS |
| GAGACAGTAGTAGACAGACA+CGG | 0.757552 | 3_3:-80733593 | Msa0476840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTGTTTTTTTTTTTTT+TGG | - | chr3_3:80735864-80735883 | Msa0476840:intron | 10.0% |
| !! | TTTATTAACTTTACTAAAAA+AGG | - | chr3_3:80736485-80736504 | Msa0476840:intron | 10.0% |
| !! | TTTACTAAAAATAAAGAGAA+AGG | - | chr3_3:80734102-80734121 | Msa0476840:intron | 15.0% |
| !! | TTACTAAAAATAAAGAGAAA+GGG | - | chr3_3:80734103-80734122 | Msa0476840:intron | 15.0% |
| !! | AATAATAATAAAATAACACG+TGG | + | chr3_3:80734396-80734415 | None:intergenic | 15.0% |
| !!! | TTTATTATTATTTTTGGCTT+TGG | - | chr3_3:80734404-80734423 | Msa0476840:intron | 15.0% |
| !!! | TTATTATTATTTTTGGCTTT+GGG | - | chr3_3:80734405-80734424 | Msa0476840:intron | 15.0% |
| !!! | TTTCTAACATTAACTTTTAT+CGG | - | chr3_3:80734558-80734577 | Msa0476840:intron | 15.0% |
| !! | TTTCTCATTTATTTATACTA+TGG | + | chr3_3:80735246-80735265 | None:intergenic | 15.0% |
| !!! | CTTTTTTTATAACAAATCAA+TGG | + | chr3_3:80735757-80735776 | None:intergenic | 15.0% |
| !! | AATATTAATATTACGTATCA+AGG | + | chr3_3:80735990-80736009 | None:intergenic | 15.0% |
| !! | TTATTATGTATTTCCACTTT+GGG | - | chr3_3:80733190-80733209 | Msa0476840:CDS | 20.0% |
| !! | AAGATATAGTAAAGTTGAAA+TGG | - | chr3_3:80734049-80734068 | Msa0476840:intron | 20.0% |
| !! | TACTAAAAATAAAGAGAAAG+GGG | - | chr3_3:80734104-80734123 | Msa0476840:intron | 20.0% |
| !! | TAACTAGTGTTAATAATGTT+AGG | - | chr3_3:80734207-80734226 | Msa0476840:intron | 20.0% |
| !! | AACTAGTGTTAATAATGTTA+GGG | - | chr3_3:80734208-80734227 | Msa0476840:intron | 20.0% |
| !!! | GTTTTGTAACTTTTTTTCTT+AGG | + | chr3_3:80734284-80734303 | None:intergenic | 20.0% |
| !!! | TATTATTATTTTTGGCTTTG+GGG | - | chr3_3:80734406-80734425 | Msa0476840:intron | 20.0% |
| !!! | CATTATTTTTAGCTAACATT+AGG | + | chr3_3:80734512-80734531 | None:intergenic | 20.0% |
| !! | CTAATGTTAGCTAAAAATAA+TGG | - | chr3_3:80734510-80734529 | Msa0476840:intron | 20.0% |
| !! | TATAACTAGTTAGAGAATTA+AGG | + | chr3_3:80734923-80734942 | None:intergenic | 20.0% |
| !! | AAAAAAAAATGGAATTTCGT+CGG | + | chr3_3:80735541-80735560 | None:intergenic | 20.0% |
| !! | TTGTTATAAAAAAAGTCCAA+TGG | - | chr3_3:80735762-80735781 | Msa0476840:intron | 20.0% |
| !! | TTCATTAAATTCATCTGTTA+TGG | + | chr3_3:80736160-80736179 | None:intergenic | 20.0% |
| !! | ATGAATAGTTCTTACTAATT+TGG | - | chr3_3:80736246-80736265 | Msa0476840:intron | 20.0% |
| !! | TTTCCATTAAAATTCGATTT+AGG | - | chr3_3:80737016-80737035 | Msa0476840:CDS | 20.0% |
| ! | GTTATTATGTATTTCCACTT+TGG | - | chr3_3:80733189-80733208 | Msa0476840:CDS | 25.0% |
| !!! | TTCTGAAATCTAACATAGTA+AGG | + | chr3_3:80733632-80733651 | None:intergenic | 25.0% |
| ! | TTACTATGTTAGATTTCAGA+AGG | - | chr3_3:80733631-80733650 | Msa0476840:intron | 25.0% |
| !!! | TTTTGAGGATAAAAAGAAAG+TGG | + | chr3_3:80733843-80733862 | None:intergenic | 25.0% |
| ! | GATATAGAAACAATGTGTAA+GGG | + | chr3_3:80733928-80733947 | None:intergenic | 25.0% |
| ! | AGATATAGAAACAATGTGTA+AGG | + | chr3_3:80733929-80733948 | None:intergenic | 25.0% |
| !!! | TTGTAACTTTTTTTCTTAGG+AGG | + | chr3_3:80734281-80734300 | None:intergenic | 25.0% |
| ! | AAAATGGATCATACATAAAG+TGG | + | chr3_3:80734605-80734624 | None:intergenic | 25.0% |
| ! | AAGTCACATCACTTAAAAAA+TGG | + | chr3_3:80734621-80734640 | None:intergenic | 25.0% |
| !!! | TTGTATTACTGGTTTTAAAG+TGG | - | chr3_3:80734711-80734730 | Msa0476840:intron | 25.0% |
| !!! | TGTATTACTGGTTTTAAAGT+GGG | - | chr3_3:80734712-80734731 | Msa0476840:intron | 25.0% |
| ! | AACTAATGTAATTGAAAGGA+TGG | + | chr3_3:80734956-80734975 | None:intergenic | 25.0% |
| ! | GGAAAACTAATGTAATTGAA+AGG | + | chr3_3:80734960-80734979 | None:intergenic | 25.0% |
| ! | TATCTTTGAATCAAACGTTA+GGG | + | chr3_3:80734981-80735000 | None:intergenic | 25.0% |
| ! | TATTTAGAGAAAATCTTGTG+TGG | + | chr3_3:80735409-80735428 | None:intergenic | 25.0% |
| !! | TTTTATAGTAAACTAATCCC+TGG | - | chr3_3:80735561-80735580 | Msa0476840:intron | 25.0% |
| !! | GATTTGGAACATTATAACAT+GGG | + | chr3_3:80735639-80735658 | None:intergenic | 25.0% |
| ! | TTAATGAATGAATAGAGAAG+AGG | - | chr3_3:80736172-80736191 | Msa0476840:intron | 25.0% |
| ! | TTAAAATGACCTACTATAGT+AGG | + | chr3_3:80736569-80736588 | None:intergenic | 25.0% |
| !!! | ACTATAGTAGGTCATTTTAA+TGG | - | chr3_3:80736569-80736588 | Msa0476840:intron | 25.0% |
| !! | TTACTATGTATGGCAATTTT+GGG | - | chr3_3:80736853-80736872 | Msa0476840:CDS | 25.0% |
| !! | ACTCCTAAATCGAATTTTAA+TGG | + | chr3_3:80737022-80737041 | None:intergenic | 25.0% |
| ! | CAGAACTTAAAGATATAGAT+TGG | + | chr3_3:80737183-80737202 | None:intergenic | 25.0% |
| ! | ATCTTGAACCTTATTATGTT+AGG | - | chr3_3:80737289-80737308 | Msa0476840:CDS | 25.0% |
| ! | TTATTATGTTAGGTTTCAGA+GGG | - | chr3_3:80737299-80737318 | Msa0476840:CDS | 25.0% |
| AATACATAATAACCTTCACC+TGG | + | chr3_3:80733182-80733201 | None:intergenic | 30.0% | |
| ! | TTTAAAAGTCTCCACACTTT+TGG | + | chr3_3:80733395-80733414 | None:intergenic | 30.0% |
| !! | AAAAGTGTGGAGACTTTTAA+AGG | - | chr3_3:80733394-80733413 | Msa0476840:CDS | 30.0% |
| TACTGATGGAACTAAAGTTA+TGG | - | chr3_3:80733583-80733602 | Msa0476840:CDS | 30.0% | |
| ! | TGCATTTTTGTGGCTTATTA+TGG | + | chr3_3:80733785-80733804 | None:intergenic | 30.0% |
| ! | CAAACTTCATTAGACTTTTG+AGG | + | chr3_3:80733858-80733877 | None:intergenic | 30.0% |
| AGACAGATTGTATAAGCAAA+AGG | + | chr3_3:80733882-80733901 | None:intergenic | 30.0% | |
| !!! | TTTTCAAAAGAACTTGCTGA+TGG | + | chr3_3:80733957-80733976 | None:intergenic | 30.0% |
| TTAAGAACTAACGATAGAAG+TGG | + | chr3_3:80734004-80734023 | None:intergenic | 30.0% | |
| ! | CTTAATTGTCTCTGTTCTTT+TGG | - | chr3_3:80734019-80734038 | Msa0476840:intron | 30.0% |
| AAAGTTGAAATGGTCAATAG+AGG | - | chr3_3:80734059-80734078 | Msa0476840:intron | 30.0% | |
| AAGTTGAAATGGTCAATAGA+GGG | - | chr3_3:80734060-80734079 | Msa0476840:intron | 30.0% | |
| AGTAAAAATCTTACTCGAGT+TGG | + | chr3_3:80734088-80734107 | None:intergenic | 30.0% | |
| TCGCAACTTAGAAAAAGTTA+GGG | + | chr3_3:80734252-80734271 | None:intergenic | 30.0% | |
| ATCGCAACTTAGAAAAAGTT+AGG | + | chr3_3:80734253-80734272 | None:intergenic | 30.0% | |
| !! | TGAATGTTAGCTTGTATTAC+TGG | - | chr3_3:80734700-80734719 | Msa0476840:intron | 30.0% |
| !!! | GTATTACTGGTTTTAAAGTG+GGG | - | chr3_3:80734713-80734732 | Msa0476840:intron | 30.0% |
| AATGTAATTGAAAGGATGGA+AGG | + | chr3_3:80734952-80734971 | None:intergenic | 30.0% | |
| CTATCTTTGAATCAAACGTT+AGG | + | chr3_3:80734982-80735001 | None:intergenic | 30.0% | |
| CTAACGTTTGATTCAAAGAT+AGG | - | chr3_3:80734980-80734999 | Msa0476840:intron | 30.0% | |
| ! | GTGATGTGTATATTCCTTTT+GGG | - | chr3_3:80735002-80735021 | Msa0476840:intron | 30.0% |
| ! | TGATGTGTATATTCCTTTTG+GGG | - | chr3_3:80735003-80735022 | Msa0476840:intron | 30.0% |
| ! | TTGCTATACATTTTGCTTTC+TGG | - | chr3_3:80735087-80735106 | Msa0476840:intron | 30.0% |
| ! | TGCTATACATTTTGCTTTCT+GGG | - | chr3_3:80735088-80735107 | Msa0476840:intron | 30.0% |
| ATAAATGAGAAACACTTGTG+TGG | - | chr3_3:80735254-80735273 | Msa0476840:intron | 30.0% | |
| ATTACAAATTTGATATCCCG+TGG | + | chr3_3:80735464-80735483 | None:intergenic | 30.0% | |
| ! | CGATTTGGAACATTATAACA+TGG | + | chr3_3:80735640-80735659 | None:intergenic | 30.0% |
| TTAGTTTAACGTTAGAGACA+CGG | + | chr3_3:80735673-80735692 | None:intergenic | 30.0% | |
| TGTCTCTAACGTTAAACTAA+TGG | - | chr3_3:80735673-80735692 | Msa0476840:intron | 30.0% | |
| ATCAATGGCTAACATTCAAT+GGG | + | chr3_3:80735742-80735761 | None:intergenic | 30.0% | |
| AATCAATGGCTAACATTCAA+TGG | + | chr3_3:80735743-80735762 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTTTGGCAGAATGC+TGG | - | chr3_3:80735875-80735894 | Msa0476840:intron | 30.0% |
| !!! | TTTTTTTTTGGCAGAATGCT+GGG | - | chr3_3:80735876-80735895 | Msa0476840:intron | 30.0% |
| TGTGAAAGAATGTTAATCTG+TGG | - | chr3_3:80735949-80735968 | Msa0476840:intron | 30.0% | |
| ! | GTGGAAATCATTTTGAATCT+TGG | - | chr3_3:80736391-80736410 | Msa0476840:intron | 30.0% |
| ! | ATTTTGAATCTTGGATCTGA+GGG | - | chr3_3:80736400-80736419 | Msa0476840:intron | 30.0% |
| AAAAAACCATGTTTCTCTCT+TGG | + | chr3_3:80736456-80736475 | None:intergenic | 30.0% | |
| !!! | AATCCCATGTTTTTTTGTTG+TGG | - | chr3_3:80736512-80736531 | Msa0476840:intron | 30.0% |
| ACACCACAACAAAAAAACAT+GGG | + | chr3_3:80736518-80736537 | None:intergenic | 30.0% | |
| ! | AACACGAGGTTATTAGTTTA+GGG | + | chr3_3:80736637-80736656 | None:intergenic | 30.0% |
| ! | TAACACGAGGTTATTAGTTT+AGG | + | chr3_3:80736638-80736657 | None:intergenic | 30.0% |
| ! | TGTGTTTTTCTACGTTAACT+CGG | + | chr3_3:80736679-80736698 | None:intergenic | 30.0% |
| ATTCTTTCTCTAGTTGTTTG+TGG | + | chr3_3:80736718-80736737 | None:intergenic | 30.0% | |
| ! | GTTACTATGTATGGCAATTT+TGG | - | chr3_3:80736852-80736871 | Msa0476840:CDS | 30.0% |
| TGATATTGGAGGTTTAACAT+TGG | - | chr3_3:80736880-80736899 | Msa0476840:CDS | 30.0% | |
| GATATTGGAGGTTTAACATT+GGG | - | chr3_3:80736881-80736900 | Msa0476840:CDS | 30.0% | |
| ATGGAAATATCAGTTTGAGT+TGG | + | chr3_3:80737003-80737022 | None:intergenic | 30.0% | |
| AAGCTTTCAAAAGAAGGATA+TGG | - | chr3_3:80737069-80737088 | Msa0476840:CDS | 30.0% | |
| !! | CTCTGAAACCTAACATAATA+AGG | + | chr3_3:80737300-80737319 | None:intergenic | 30.0% |
| CTTATTATGTTAGGTTTCAG+AGG | - | chr3_3:80737298-80737317 | Msa0476840:CDS | 30.0% | |
| TAATGTTATGCCTCCATTGT+CGG | + | chr3_3:80733216-80733235 | None:intergenic | 35.0% | |
| ACCATTGAGATTCCAATTCT+GGG | - | chr3_3:80733353-80733372 | Msa0476840:CDS | 35.0% | |
| !! | AGACTTTTAAAGGTTGGATC+TGG | - | chr3_3:80733404-80733423 | Msa0476840:CDS | 35.0% |
| !! | GACTTTTAAAGGTTGGATCT+GGG | - | chr3_3:80733405-80733424 | Msa0476840:CDS | 35.0% |
| TTAGCAAGTTCAAGATTGAG+AGG | - | chr3_3:80733468-80733487 | Msa0476840:intron | 35.0% | |
| GTATCTACAAAAGTTCCAAC+AGG | + | chr3_3:80733566-80733585 | None:intergenic | 35.0% | |
| ! | GGAACTTTTGTAGATACTGA+TGG | - | chr3_3:80733569-80733588 | Msa0476840:CDS | 35.0% |
| ! | ATTATTGCTCTGAGCAAAAG+TGG | + | chr3_3:80733660-80733679 | None:intergenic | 35.0% |
| !! | AAGTGTGATGGGTCATAATA+AGG | - | chr3_3:80733750-80733769 | Msa0476840:intron | 35.0% |
| ATGGGTCATAATAAGGATTG+CGG | - | chr3_3:80733757-80733776 | Msa0476840:intron | 35.0% | |
| ! | TCTGTTTGTGTGCATTTTTG+TGG | + | chr3_3:80733795-80733814 | None:intergenic | 35.0% |
| !!! | CAAAAGCATTTTAGCGATAC+TGG | - | chr3_3:80734134-80734153 | Msa0476840:intron | 35.0% |
| CGATACTGGATTGTTTATGT+TGG | - | chr3_3:80734148-80734167 | Msa0476840:intron | 35.0% | |
| !! | GATTGTTTATGTTGGTAGCT+TGG | - | chr3_3:80734156-80734175 | Msa0476840:intron | 35.0% |
| CGCAACTTAGAAAAAGTTAG+GGG | + | chr3_3:80734251-80734270 | None:intergenic | 35.0% | |
| !! | ACTGAGTCAAAATTGGTCTT+GGG | + | chr3_3:80734343-80734362 | None:intergenic | 35.0% |
| ! | TTTTGCAACTGTAGCAGTTT+TGG | + | chr3_3:80734434-80734453 | None:intergenic | 35.0% |
| TGCTACAGTTGCAAAACTTA+GGG | - | chr3_3:80734438-80734457 | Msa0476840:intron | 35.0% | |
| ! | GGTGATGTGTATATTCCTTT+TGG | - | chr3_3:80735001-80735020 | Msa0476840:intron | 35.0% |
| ! | GATGTGTATATTCCTTTTGG+GGG | - | chr3_3:80735004-80735023 | Msa0476840:intron | 35.0% |
| ! | ATGTGTATATTCCTTTTGGG+GGG | - | chr3_3:80735005-80735024 | Msa0476840:intron | 35.0% |
| ACTGTTGTCATTATGGATCA+GGG | + | chr3_3:80735209-80735228 | None:intergenic | 35.0% | |
| TACTGTTGTCATTATGGATC+AGG | + | chr3_3:80735210-80735229 | None:intergenic | 35.0% | |
| ! | GACAAGTACTGTTGTCATTA+TGG | + | chr3_3:80735216-80735235 | None:intergenic | 35.0% |
| TGTGACCAAACCAAAATTCT+TGG | + | chr3_3:80735376-80735395 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | - | chr3_3:80735376-80735395 | Msa0476840:intron | 35.0% | |
| !!! | CAAGACCAAGAATTTTGGTT+TGG | + | chr3_3:80735384-80735403 | None:intergenic | 35.0% |
| CAAACCAAAATTCTTGGTCT+TGG | - | chr3_3:80735382-80735401 | Msa0476840:intron | 35.0% | |
| AAATTTGATATCCCGTGGAT+GGG | + | chr3_3:80735459-80735478 | None:intergenic | 35.0% | |
| ! | AGAGCATCTCTTATGCAAAA+TGG | + | chr3_3:80735494-80735513 | None:intergenic | 35.0% |
| AAAAAATGGAATTTCGTCGG+TGG | + | chr3_3:80735538-80735557 | None:intergenic | 35.0% | |
| TTGGAACATTATAACATGGG+TGG | + | chr3_3:80735636-80735655 | None:intergenic | 35.0% | |
| AATTTGCACCACTAGAACTT+TGG | - | chr3_3:80735704-80735723 | Msa0476840:intron | 35.0% | |
| ATTTGCACCACTAGAACTTT+GGG | - | chr3_3:80735705-80735724 | Msa0476840:intron | 35.0% | |
| AGTCCAATGGTGTAGATTAA+AGG | - | chr3_3:80735775-80735794 | Msa0476840:intron | 35.0% | |
| CTACCTTTAATCTACACCAT+TGG | + | chr3_3:80735781-80735800 | None:intergenic | 35.0% | |
| CAATGGTGTAGATTAAAGGT+AGG | - | chr3_3:80735779-80735798 | Msa0476840:intron | 35.0% | |
| !!! | GGTTTTGTTGAATTGTTGCT+GGG | - | chr3_3:80735897-80735916 | Msa0476840:intron | 35.0% |
| TGAATAGAGAAGAGGTTACA+AGG | - | chr3_3:80736180-80736199 | Msa0476840:intron | 35.0% | |
| ! | GTTTACATAGCACTTGTTAG+TGG | + | chr3_3:80736274-80736293 | None:intergenic | 35.0% |
| ! | CATTTTGAATCTTGGATCTG+AGG | - | chr3_3:80736399-80736418 | Msa0476840:intron | 35.0% |
| CACACCACAACAAAAAAACA+TGG | + | chr3_3:80736519-80736538 | None:intergenic | 35.0% | |
| !!! | TGTAGTGTTGCTTTTTAACC+TGG | - | chr3_3:80736537-80736556 | Msa0476840:intron | 35.0% |
| TACTATAGTAGGTAATGTCC+AGG | + | chr3_3:80736558-80736577 | None:intergenic | 35.0% | |
| TGGACATTACCTACTATAGT+AGG | - | chr3_3:80736557-80736576 | Msa0476840:intron | 35.0% | |
| !! | GTCATTTTAATGGTCCAAGT+TGG | - | chr3_3:80736579-80736598 | Msa0476840:intron | 35.0% |
| ! | AGTTTAGGGTGCATTTAGTT+TGG | + | chr3_3:80736623-80736642 | None:intergenic | 35.0% |
| TTTATGGTCAATGTAACACG+AGG | + | chr3_3:80736651-80736670 | None:intergenic | 35.0% | |
| ! | GTGTTTTTCTACGTTAACTC+GGG | + | chr3_3:80736678-80736697 | None:intergenic | 35.0% |
| ATGTTTCCTAATCTCTCTCT+TGG | - | chr3_3:80736753-80736772 | Msa0476840:CDS | 35.0% | |
| CAGGAAAAGGTTACTATGTA+TGG | - | chr3_3:80736843-80736862 | Msa0476840:CDS | 35.0% | |
| ! | CAATTTTGGGCTGATGATAT+TGG | - | chr3_3:80736866-80736885 | Msa0476840:CDS | 35.0% |
| AATTCGTACCCTAAAGAACT+CGG | - | chr3_3:80736937-80736956 | Msa0476840:CDS | 35.0% | |
| ! | GTTGGAATGTGTTTAAAACC+TGG | + | chr3_3:80736985-80737004 | None:intergenic | 35.0% |
| GTGTTGAAGCTTTCAAAAGA+AGG | - | chr3_3:80737063-80737082 | Msa0476840:CDS | 35.0% | |
| CAAAAGAAGGATATGGATTC+TGG | - | chr3_3:80737076-80737095 | Msa0476840:CDS | 35.0% | |
| TTCAAGATTGAGAAGCTTGA+AGG | - | chr3_3:80737144-80737163 | Msa0476840:CDS | 35.0% | |
| TACCGATGGAACTAAAGTTA+TGG | - | chr3_3:80737254-80737273 | Msa0476840:CDS | 35.0% | |
| ! | AGCCATAACTTTAGTTCCAT+CGG | + | chr3_3:80733588-80733607 | None:intergenic | 35.0% |
| !! | GATCTTCTTTGGAGTAAAAG+TGG | + | chr3_3:80737328-80737347 | None:intergenic | 35.0% |
| TGAACAACGCTAAGAGAGAA+AGG | + | chr3_3:80733094-80733113 | None:intergenic | 40.0% | |
| TTCAACACAAAGCCACTACA+AGG | - | chr3_3:80733110-80733129 | Msa0476840:CDS | 40.0% | |
| ! | GACAATGGAGGCATAACATT+AGG | - | chr3_3:80733215-80733234 | Msa0476840:CDS | 40.0% |
| CCTGATGCAGAGAAATAAAC+TGG | + | chr3_3:80733302-80733321 | None:intergenic | 40.0% | |
| ! | CCAGTTTATTTCTCTGCATC+AGG | - | chr3_3:80733299-80733318 | Msa0476840:CDS | 40.0% |
| CACCATTGAGATTCCAATTC+TGG | - | chr3_3:80733352-80733371 | Msa0476840:CDS | 40.0% | |
| ACCCAGAATTGGAATCTCAA+TGG | + | chr3_3:80733357-80733376 | None:intergenic | 40.0% | |
| !!! | CACACTTTTGGTTCATTGCA+AGG | + | chr3_3:80733383-80733402 | None:intergenic | 40.0% |
| CTTGCAATGAACCAAAAGTG+TGG | - | chr3_3:80733381-80733400 | Msa0476840:CDS | 40.0% | |
| !! | GTGTGGAGACTTTTAAAGGT+TGG | - | chr3_3:80733398-80733417 | Msa0476840:CDS | 40.0% |
| ! | TAAAGGTTGGATCTGGGTTT+TGG | - | chr3_3:80733411-80733430 | Msa0476840:CDS | 40.0% |
| GGAACTAAAGTTATGGCTGT+TGG | - | chr3_3:80733590-80733609 | Msa0476840:CDS | 40.0% | |
| ! | AAAGTTATGGCTGTTGGTGA+TGG | - | chr3_3:80733596-80733615 | Msa0476840:CDS | 40.0% |
| TGCTTAGTAGTGAAGTGTGA+TGG | - | chr3_3:80733738-80733757 | Msa0476840:intron | 40.0% | |
| GCTTAGTAGTGAAGTGTGAT+GGG | - | chr3_3:80733739-80733758 | Msa0476840:intron | 40.0% | |
| ! | TTTTGCACCTGTGACAGTTT+TGG | - | chr3_3:80734315-80734334 | Msa0476840:intron | 40.0% |
| !! | TGAGTCAAAATTGGTCTTGG+GGG | + | chr3_3:80734341-80734360 | None:intergenic | 40.0% |
| !! | CTGAGTCAAAATTGGTCTTG+GGG | + | chr3_3:80734342-80734361 | None:intergenic | 40.0% |
| ! | GACTGAGTCAAAATTGGTCT+TGG | + | chr3_3:80734344-80734363 | None:intergenic | 40.0% |
| AGCGTAGACTGAGTCAAAAT+TGG | + | chr3_3:80734350-80734369 | None:intergenic | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | - | chr3_3:80734437-80734456 | Msa0476840:intron | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | - | chr3_3:80734439-80734458 | Msa0476840:intron | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | - | chr3_3:80734440-80734459 | Msa0476840:intron | 40.0% | |
| GCAACTTCGTGAAAGTTAGA+GGG | - | chr3_3:80734469-80734488 | Msa0476840:intron | 40.0% | |
| CATAGTTCCATGCATGCAAT+CGG | - | chr3_3:80734803-80734822 | Msa0476840:intron | 40.0% | |
| GCATTGTGTCTAACACAAGT+TGG | - | chr3_3:80734873-80734892 | Msa0476840:intron | 40.0% | |
| TCATCTGAGAGCAGAACATA+TGG | - | chr3_3:80735159-80735178 | Msa0476840:intron | 40.0% | |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr3_3:80735281-80735300 | None:intergenic | 40.0% | |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr3_3:80735279-80735298 | Msa0476840:intron | 40.0% |
| ! | TGGACCAAGACCAAGAATTT+TGG | + | chr3_3:80735389-80735408 | None:intergenic | 40.0% |
| AATTTGATATCCCGTGGATG+GGG | + | chr3_3:80735458-80735477 | None:intergenic | 40.0% | |
| CAAATTTGATATCCCGTGGA+TGG | + | chr3_3:80735460-80735479 | None:intergenic | 40.0% | |
| TAGTAAACTAATCCCTGGCA+TGG | - | chr3_3:80735566-80735585 | Msa0476840:intron | 40.0% | |
| AACATTCAATGGGTCCAAGT+TGG | + | chr3_3:80735732-80735751 | None:intergenic | 40.0% | |
| GAGGAATCAACTTGCATCTT+TGG | + | chr3_3:80735808-80735827 | None:intergenic | 40.0% | |
| !!! | GGGTTTTGTTGAATTGTTGC+TGG | - | chr3_3:80735896-80735915 | Msa0476840:intron | 40.0% |
| ! | TTGAATTGTTGCTGGGCTTT+TGG | - | chr3_3:80735904-80735923 | Msa0476840:intron | 40.0% |
| ! | TGAATTGTTGCTGGGCTTTT+GGG | - | chr3_3:80735905-80735924 | Msa0476840:intron | 40.0% |
| TCTGACTTCTTACAAGAGCA+AGG | + | chr3_3:80736134-80736153 | None:intergenic | 40.0% | |
| ATAGAGAAGAGGTTACAAGG+AGG | - | chr3_3:80736183-80736202 | Msa0476840:intron | 40.0% | |
| CTGTAACTGTAATGACACAG+AGG | + | chr3_3:80736221-80736240 | None:intergenic | 40.0% | |
| AAGTGCTATGTAAACTCAGC+TGG | - | chr3_3:80736279-80736298 | Msa0476840:intron | 40.0% | |
| TATGTAAACTCAGCTGGTGT+TGG | - | chr3_3:80736285-80736304 | Msa0476840:intron | 40.0% | |
| !! | ACTGTGCTGACTCAAGTATA+TGG | - | chr3_3:80736313-80736332 | Msa0476840:intron | 40.0% |
| ! | ATGTTTTCACGACCAACAAC+TGG | - | chr3_3:80736357-80736376 | Msa0476840:intron | 40.0% |
| ACACAACCAAGAGAGAAACA+TGG | - | chr3_3:80736447-80736466 | Msa0476840:intron | 40.0% | |
| GTTTGGACCACCAATTGTTT+GGG | + | chr3_3:80736606-80736625 | None:intergenic | 40.0% | |
| AGTTTGGACCACCAATTGTT+TGG | + | chr3_3:80736607-80736626 | None:intergenic | 40.0% | |
| ! | TAACCTTTTCCTGACTCAAG+AGG | + | chr3_3:80736836-80736855 | None:intergenic | 40.0% |
| ! | TTTTGGGCTGATGATATTGG+AGG | - | chr3_3:80736869-80736888 | Msa0476840:CDS | 40.0% |
| AGGGTACGAATTACATCAAG+AGG | + | chr3_3:80736929-80736948 | None:intergenic | 40.0% | |
| ATTTAGGAGTAGTCCATGCA+AGG | - | chr3_3:80737032-80737051 | Msa0476840:CDS | 40.0% | |
| !! | AACACTTTTGACTCCTTGCA+TGG | + | chr3_3:80737048-80737067 | None:intergenic | 40.0% |
| !! | TGAACTTGCTAACAACATCC+CGG | + | chr3_3:80737128-80737147 | None:intergenic | 40.0% |
| TCTGTGAAAGTTCGAAGTAC+AGG | + | chr3_3:80737234-80737253 | None:intergenic | 40.0% | |
| GGAACTAAAGTTATGGCTGT+TGG | - | chr3_3:80733590-80733609 | Msa0476840:CDS | 40.0% | |
| TGTTTGTCTACTACTGCCTC+TGG | + | chr3_3:80733143-80733162 | None:intergenic | 45.0% | |
| GAGGCAGTAGTAGACAAACA+AGG | - | chr3_3:80733143-80733162 | Msa0476840:CDS | 45.0% | |
| AACCTTCACCTGGTTGAAGA+GGG | + | chr3_3:80733172-80733191 | None:intergenic | 45.0% | |
| TAACCTTCACCTGGTTGAAG+AGG | + | chr3_3:80733173-80733192 | None:intergenic | 45.0% | |
| ATCCGTAACCCTGATGCAAT+TGG | - | chr3_3:80733272-80733291 | Msa0476840:CDS | 45.0% | |
| TGCCAATTGCATCAGGGTTA+CGG | + | chr3_3:80733277-80733296 | None:intergenic | 45.0% | |
| ATGGTGAGATCAGTGAGAGT+TGG | + | chr3_3:80733338-80733357 | None:intergenic | 45.0% | |
| TTGCAAGGACTACCCAGAAT+TGG | + | chr3_3:80733368-80733387 | None:intergenic | 45.0% | |
| !!! | TTTTGGTTTGTGAGCACTGG+TGG | - | chr3_3:80733428-80733447 | Msa0476840:intron | 45.0% |
| TTCAAGATTGAGAGGCTTGC+AGG | - | chr3_3:80733476-80733495 | Msa0476840:intron | 45.0% | |
| AAGTTCTGTCCTTCTGTTCC+TGG | - | chr3_3:80733527-80733546 | Msa0476840:intron | 45.0% | |
| CAAAGAACACCAGGAACAGA+AGG | + | chr3_3:80733539-80733558 | None:intergenic | 45.0% | |
| TCACAGGTGCAAAACTTAGG+AGG | + | chr3_3:80734309-80734328 | None:intergenic | 45.0% | |
| CTGTCACAGGTGCAAAACTT+AGG | + | chr3_3:80734312-80734331 | None:intergenic | 45.0% | |
| AACACGTGGCACCTTTCTTA+GGG | + | chr3_3:80734382-80734401 | None:intergenic | 45.0% | |
| TAACACGTGGCACCTTTCTT+AGG | + | chr3_3:80734383-80734402 | None:intergenic | 45.0% | |
| CGCAACTTCGTGAAAGTTAG+AGG | - | chr3_3:80734468-80734487 | Msa0476840:intron | 45.0% | |
| GATGTATCCGATTGCATGCA+TGG | + | chr3_3:80734813-80734832 | None:intergenic | 45.0% | |
| !! | TGTATATTCCTTTTGGGGGG+TGG | - | chr3_3:80735008-80735027 | Msa0476840:intron | 45.0% |
| !! | GTATATTCCTTTTGGGGGGT+GGG | - | chr3_3:80735009-80735028 | Msa0476840:intron | 45.0% |
| TTGCTTTCTGGGTGTGAACA+CGG | - | chr3_3:80735099-80735118 | Msa0476840:intron | 45.0% | |
| CTGCTCTCAGATGATGAATG+TGG | + | chr3_3:80735153-80735172 | None:intergenic | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr3_3:80735274-80735293 | Msa0476840:intron | 45.0% |
| GAGAGAAGAGAAGAGAGAGA+AGG | + | chr3_3:80735325-80735344 | None:intergenic | 45.0% | |
| TTGCTATGAGTTCCATGCCA+GGG | + | chr3_3:80735581-80735600 | None:intergenic | 45.0% | |
| !!! | CACGGCGTTTTGATTCGATT+TGG | + | chr3_3:80735655-80735674 | None:intergenic | 45.0% |
| ! | AGTTGGACCCAAAGTTCTAG+TGG | + | chr3_3:80735715-80735734 | None:intergenic | 45.0% |
| CTAGAACTTTGGGTCCAACT+TGG | - | chr3_3:80735715-80735734 | Msa0476840:intron | 45.0% | |
| ACTACATGTGAGCATGAGAG+AGG | + | chr3_3:80735827-80735846 | None:intergenic | 45.0% | |
| CTCTCATGCTCACATGTAGT+TGG | - | chr3_3:80735827-80735846 | Msa0476840:intron | 45.0% | |
| ! | GAATTGTTGCTGGGCTTTTG+GGG | - | chr3_3:80735906-80735925 | Msa0476840:intron | 45.0% |
| ! | AATTGTTGCTGGGCTTTTGG+GGG | - | chr3_3:80735907-80735926 | Msa0476840:intron | 45.0% |
| CAGATCCAATGTCCAGTTGT+TGG | + | chr3_3:80736372-80736391 | None:intergenic | 45.0% | |
| ACAACTGGACATTGGATCTG+TGG | - | chr3_3:80736372-80736391 | Msa0476840:intron | 45.0% | |
| CCAATTGTTTGGGTCCAACT+TGG | + | chr3_3:80736596-80736615 | None:intergenic | 45.0% | |
| ! | CCAAGTTGGACCCAAACAAT+TGG | - | chr3_3:80736593-80736612 | Msa0476840:intron | 45.0% |
| AGTTGGACCCAAACAATTGG+TGG | - | chr3_3:80736596-80736615 | Msa0476840:intron | 45.0% | |
| CGTTAACTCGGGCATGTTTA+TGG | + | chr3_3:80736667-80736686 | None:intergenic | 45.0% | |
| GCAACACCAAGAGAGAGATT+AGG | + | chr3_3:80736762-80736781 | None:intergenic | 45.0% | |
| !! | TGGTGTTGCTCAACACTACA+AGG | - | chr3_3:80736773-80736792 | Msa0476840:CDS | 45.0% |
| TGTCTGTCTACTACTGTCTC+TGG | + | chr3_3:80736806-80736825 | None:intergenic | 45.0% | |
| GAGACAGTAGTAGACAGACA+CGG | - | chr3_3:80736806-80736825 | Msa0476840:CDS | 45.0% | |
| AAGCCTCTTGAGTCAGGAAA+AGG | - | chr3_3:80736830-80736849 | Msa0476840:CDS | 45.0% | |
| AGAAGCTTGAAGGAGACACT+GGG | - | chr3_3:80737154-80737173 | Msa0476840:CDS | 45.0% | |
| AAGTTCTGTCCTTCTGTTCC+TGG | - | chr3_3:80733527-80733546 | Msa0476840:intron | 45.0% | |
| ! | CATAAAGCACCAGGAACAGA+AGG | + | chr3_3:80737207-80737226 | None:intergenic | 45.0% |
| CGAACTTTCACAGATACCGA+TGG | - | chr3_3:80737240-80737259 | Msa0476840:CDS | 45.0% | |
| !!! | TGTTATTTTATTATTATTTT+TGG | - | chr3_3:80734398-80734417 | Msa0476840:intron | 5.0% |
| !! | TTACTATAAAAAAAAAAAAA+TGG | + | chr3_3:80735552-80735571 | None:intergenic | 5.0% |
| ! | TCTGGTTCAGCTCCTTGTAG+TGG | + | chr3_3:80733125-80733144 | None:intergenic | 50.0% |
| ACTACAAGGAGCTGAACCAG+AGG | - | chr3_3:80733124-80733143 | Msa0476840:CDS | 50.0% | |
| CAAGGTAACCCTCTTCAACC+AGG | - | chr3_3:80733161-80733180 | Msa0476840:CDS | 50.0% | |
| AACCCTCTTCAACCAGGTGA+AGG | - | chr3_3:80733167-80733186 | Msa0476840:CDS | 50.0% | |
| TTTCCACTTTGGGCCGACAA+TGG | - | chr3_3:80733200-80733219 | Msa0476840:CDS | 50.0% | |
| ! | GGGTTACGGATTACGTCAAG+AGG | + | chr3_3:80733263-80733282 | None:intergenic | 50.0% |
| CTGGTGTGCCAATTGCATCA+GGG | + | chr3_3:80733283-80733302 | None:intergenic | 50.0% | |
| ACTGGTGTGCCAATTGCATC+AGG | + | chr3_3:80733284-80733303 | None:intergenic | 50.0% | |
| !!! | GGGTTTTGGTTTGTGAGCAC+TGG | - | chr3_3:80733425-80733444 | Msa0476840:intron | 50.0% |
| ! | ACAGGAGCACAAAGAACACC+AGG | + | chr3_3:80733548-80733567 | None:intergenic | 50.0% |
| GGTGTTCTTTGTGCTCCTGT+TGG | - | chr3_3:80733548-80733567 | Msa0476840:CDS | 50.0% | |
| CAGGTGCAAAACTTAGGAGG+CGG | + | chr3_3:80734306-80734325 | None:intergenic | 50.0% | |
| CTGAGAGCAGAACATATGGC+AGG | - | chr3_3:80735163-80735182 | Msa0476840:intron | 50.0% | |
| ! | CAGGAGAGAAAGTGCAGCAT+AGG | - | chr3_3:80735182-80735201 | Msa0476840:intron | 50.0% |
| GAGAAACACTTGTGTGGACC+AGG | - | chr3_3:80735260-80735279 | Msa0476840:intron | 50.0% | |
| CAGTGAAGATACCCCATCCA+CGG | - | chr3_3:80735444-80735463 | Msa0476840:intron | 50.0% | |
| AGTGAAGATACCCCATCCAC+GGG | - | chr3_3:80735445-80735464 | Msa0476840:intron | 50.0% | |
| GTTGCTATGAGTTCCATGCC+AGG | + | chr3_3:80735582-80735601 | None:intergenic | 50.0% | |
| CACGACCAACAACTGGACAT+TGG | - | chr3_3:80736364-80736383 | Msa0476840:intron | 50.0% | |
| !! | GGATTCTGGTTTGTGAGCAC+TGG | - | chr3_3:80737090-80737109 | Msa0476840:CDS | 50.0% |
| !! | TTCTGGTTTGTGAGCACTGG+TGG | - | chr3_3:80737093-80737112 | Msa0476840:CDS | 50.0% |
| GAGAAGCTTGAAGGAGACAC+TGG | - | chr3_3:80737153-80737172 | Msa0476840:CDS | 50.0% | |
| ! | ACAGGAGCACATAAAGCACC+AGG | + | chr3_3:80737216-80737235 | None:intergenic | 50.0% |
| TTGGGGGCCAAAACTGTCAC+AGG | + | chr3_3:80734325-80734344 | None:intergenic | 55.0% | |
| TGACTCAGTCTACGCTGACG+TGG | - | chr3_3:80734354-80734373 | Msa0476840:intron | 55.0% | |
| CTGACGTGGCACCCTAAGAA+AGG | - | chr3_3:80734368-80734387 | Msa0476840:intron | 55.0% | |
| AACATCACCCACCCCCCAAA+AGG | + | chr3_3:80735019-80735038 | None:intergenic | 55.0% | |
| CACGGTAAGCCTCTTGAGTC+AGG | - | chr3_3:80736824-80736843 | Msa0476840:CDS | 55.0% | |
| CTGGCGAGCCGAGTTCTTTA+GGG | + | chr3_3:80736948-80736967 | None:intergenic | 55.0% | |
| ACTGGCGAGCCGAGTTCTTT+AGG | + | chr3_3:80736949-80736968 | None:intergenic | 55.0% | |
| ! | CCTGGTGCAGAGAAGTACAC+TGG | + | chr3_3:80736967-80736986 | None:intergenic | 55.0% |
| CCAGTGTACTTCTCTGCACC+AGG | - | chr3_3:80736964-80736983 | Msa0476840:CDS | 55.0% | |
| CCTCCATTGTCGGCCCAAAG+TGG | + | chr3_3:80733206-80733225 | None:intergenic | 60.0% | |
| CCACTTTGGGCCGACAATGG+AGG | - | chr3_3:80733203-80733222 | Msa0476840:CDS | 60.0% | |
| !! | TGAGCACTGGTGGTGCAGCT+GGG | - | chr3_3:80733438-80733457 | Msa0476840:intron | 60.0% |
| !! | GTGAGCACTGGTGGTGTAGC+TGG | - | chr3_3:80737102-80737121 | Msa0476840:CDS | 60.0% |
| !! | GTGAGCACTGGTGGTGCAGC+TGG | - | chr3_3:80733437-80733456 | Msa0476840:intron | 65.0% |
| !! | GAGCACTGGTGGTGCAGCTG+GGG | - | chr3_3:80733439-80733458 | Msa0476840:intron | 65.0% |
| ! | GCACTGGTGGTGTAGCTGGC+CGG | - | chr3_3:80737106-80737125 | Msa0476840:CDS | 65.0% |
| ! | CACTGGTGGTGTAGCTGGCC+GGG | - | chr3_3:80737107-80737126 | Msa0476840:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 80733065 | 80737356 | 80733065 | ID=Msa0476840;Name=Msa0476840 |
| chr3_3 | mRNA | 80733065 | 80737356 | 80733065 | ID=Msa0476840-mRNA-1;Parent=Msa0476840;Name=Msa0476840-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|1|1|1|3|0|364 |
| chr3_3 | exon | 80736729 | 80737356 | 80736729 | ID=Msa0476840-mRNA-1:exon:22185;Parent=Msa0476840-mRNA-1 |
| chr3_3 | exon | 80733531 | 80733626 | 80733531 | ID=Msa0476840-mRNA-1:exon:22184;Parent=Msa0476840-mRNA-1 |
| chr3_3 | exon | 80733065 | 80733435 | 80733065 | ID=Msa0476840-mRNA-1:exon:22183;Parent=Msa0476840-mRNA-1 |
| chr3_3 | CDS | 80736729 | 80737356 | 80736729 | ID=Msa0476840-mRNA-1:cds;Parent=Msa0476840-mRNA-1 |
| chr3_3 | CDS | 80733531 | 80733626 | 80733531 | ID=Msa0476840-mRNA-1:cds;Parent=Msa0476840-mRNA-1 |
| chr3_3 | CDS | 80733065 | 80733435 | 80733065 | ID=Msa0476840-mRNA-1:cds;Parent=Msa0476840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
