AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0433600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433600 MtrunA17_Chr3g0139371 89.885 435 11 2 1 435 1 402 0.0 784
Msa0433600 MtrunA17_Chr4g0058241 56.236 441 140 8 10 431 17 423 3.26e-165 471
Msa0433600 MtrunA17_Chr3g0116701 56.081 444 143 9 4 431 12 419 1.90e-162 464
Msa0433600 MtrunA17_Chr3g0123491 55.629 453 142 7 2 431 4 420 2.68e-162 464
Msa0433600 MtrunA17_Chr8g0369241 32.044 362 179 10 107 430 148 480 2.94e-44 165
Msa0433600 MtrunA17_Chr6g0480541 32.938 337 191 8 101 434 899 1203 2.58e-41 157
Msa0433600 MtrunA17_Chr5g0407121 30.829 386 188 11 107 431 47 414 3.47e-41 152
Msa0433600 MtrunA17_Chr5g0437131 30.267 337 192 6 98 429 405 703 2.81e-39 150
Msa0433600 MtrunA17_Chr1g0210061 29.716 387 208 10 56 431 592 925 2.92e-39 150
Msa0433600 MtrunA17_Chr8g0370321 29.581 382 194 11 107 431 47 410 1.09e-38 145
Msa0433600 MtrunA17_Chr4g0027671 32.184 174 91 3 271 431 319 478 6.50e-23 101
Msa0433600 MtrunA17_Chr4g0027671 33.333 156 89 4 93 242 34 180 3.12e-20 93.2
Msa0433600 MtrunA17_Chr4g0051261 27.545 334 176 11 107 432 13 288 1.26e-22 97.4
Msa0433600 MtrunA17_Chr1g0179611 36.364 143 76 4 107 243 53 186 4.10e-22 99.0
Msa0433600 MtrunA17_Chr1g0179611 33.333 174 89 3 271 431 319 478 1.45e-20 94.0
Msa0433600 MtrunA17_Chr2g0320631 33.333 174 89 4 271 431 318 477 1.06e-21 97.4
Msa0433600 MtrunA17_Chr2g0320631 33.974 156 88 4 93 242 35 181 4.67e-21 95.5
Msa0433600 MtrunA17_Chr8g0339221 27.811 338 173 13 107 435 13 288 2.62e-21 95.9
Msa0433600 MtrunA17_Chr4g0057791 28.402 338 178 11 107 432 227 512 5.03e-21 95.5
Msa0433600 MtrunA17_Chr6g0480481 31.140 228 93 6 101 326 35 200 8.18e-21 90.1
Msa0433600 MtrunA17_Chr3g0141871 26.048 334 183 10 107 431 41 319 7.89e-20 90.5
Msa0433600 MtrunA17_Chr2g0293491 27.327 333 178 12 107 432 13 288 1.07e-19 89.0
Msa0433600 MtrunA17_Chr8g0369451 27.844 334 171 13 107 432 13 284 3.59e-19 89.4
Msa0433600 MtrunA17_Chr4g0038501 30.804 224 110 6 107 323 29 214 7.39e-19 89.7
Msa0433600 MtrunA17_Chr4g0002001 27.874 348 171 12 107 431 13 303 7.59e-19 87.0
Msa0433600 MtrunA17_Chr1g0187371 26.488 336 182 12 107 431 27 308 1.56e-18 85.9
Msa0433600 MtrunA17_Chr8g0348481 26.426 333 182 11 107 431 46 323 2.41e-18 86.3
Msa0433600 MtrunA17_Chr4g0065851 27.219 338 178 14 107 431 34 316 2.51e-18 87.4
Msa0433600 MtrunA17_Chr6g0478601 31.801 261 141 11 107 349 120 361 3.29e-18 87.0
Msa0433600 MtrunA17_Chr4g0038091 30.357 224 111 6 107 323 29 214 4.04e-18 87.4
Msa0433600 MtrunA17_Chr4g0030231 27.715 267 133 9 170 431 115 326 9.08e-18 84.7
Msa0433600 MtrunA17_Chr3g0130781 24.719 356 187 14 107 433 27 330 1.12e-17 85.1
Msa0433600 MtrunA17_Chr4g0045841 24.107 336 185 12 107 431 64 340 7.45e-17 82.0
Msa0433600 MtrunA17_Chr4g0030151 25.225 333 186 12 107 431 48 325 8.57e-17 81.6
Msa0433600 MtrunA17_Chr8g0358921 26.036 338 179 12 107 431 56 335 1.17e-16 80.9
Msa0433600 MtrunA17_Chr2g0287271 27.139 339 179 14 107 432 34 317 1.44e-16 82.0
Msa0433600 MtrunA17_Chr2g0284091 26.126 333 185 10 105 431 47 324 1.65e-16 80.9
Msa0433600 MtrunA17_Chr4g0018201 32.751 229 130 9 107 324 768 983 2.89e-16 81.6
Msa0433600 MtrunA17_Chr5g0428981 32.314 229 131 9 107 324 772 987 4.01e-16 81.3
Msa0433600 MtrunA17_Chr2g0277011 24.490 343 191 12 98 431 91 374 4.58e-16 79.7
Msa0433600 MtrunA17_Chr7g0248461 25.526 333 185 12 107 431 47 324 5.55e-16 79.3
Msa0433600 MtrunA17_Chr8g0392811 25.595 336 186 11 107 431 126 408 9.29e-16 79.7
Msa0433600 MtrunA17_Chr1g0205931 26.515 264 145 9 107 356 64 292 9.34e-16 79.7
Msa0433600 MtrunA17_Chr8g0350311 25.369 339 180 15 105 431 146 423 1.04e-15 79.0
Msa0433600 MtrunA17_Chr6g0483151 24.412 340 180 12 107 434 23 297 1.07e-15 78.6
Msa0433600 MtrunA17_Chr1g0170551 27.046 281 142 11 107 371 16 249 1.11e-15 79.7
Msa0433600 MtrunA17_Chr8g0378831 25.074 339 180 11 107 431 41 319 1.59e-15 77.8
Msa0433600 MtrunA17_Chr8g0377071 27.027 333 187 10 107 432 394 677 3.12e-15 78.2
Msa0433600 MtrunA17_Chr8g0359091 28.319 339 175 14 107 432 35 318 4.30e-15 77.4
Msa0433600 MtrunA17_Chr3g0122781 26.957 345 187 12 107 432 425 723 4.47e-15 77.8
Msa0433600 MtrunA17_Chr2g0320011 24.551 334 189 11 105 431 95 372 4.92e-15 76.6
Msa0433600 MtrunA17_Chr5g0443351 25.595 336 186 11 107 431 31 313 5.17e-15 77.0
Msa0433600 MtrunA17_Chr3g0102571 25.385 260 146 7 173 431 154 366 6.40e-15 76.3
Msa0433600 MtrunA17_Chr3g0096631 25.816 337 186 11 107 432 34 317 7.05e-15 76.6
Msa0433600 MtrunA17_Chr3g0099951 23.054 334 188 10 107 431 23 296 4.63e-14 73.6
Msa0433600 MtrunA17_Chr7g0272841 25.758 264 147 8 107 356 77 305 5.96e-14 73.9
Msa0433600 MtrunA17_Chr3g0093391 24.419 344 188 11 107 431 32 322 7.63e-14 73.6
Msa0433600 MtrunA17_Chr6g0482681 24.932 365 207 14 78 431 72 380 7.75e-14 73.6
Msa0433600 MtrunA17_Chr3g0093571 24.709 344 187 11 107 431 34 324 8.66e-14 73.2
Msa0433600 MtrunA17_Chr7g0246591 23.615 343 198 11 98 431 138 425 1.76e-13 72.0
Msa0433600 MtrunA17_Chr2g0314321 26.331 357 176 13 107 432 34 334 1.78e-13 72.4
Msa0433600 MtrunA17_Chr7g0245031 27.876 226 122 7 107 328 157 345 2.37e-13 71.6
Msa0433600 MtrunA17_Chr1g0190131 26.061 330 154 10 107 430 18 263 2.43e-13 70.1
Msa0433600 MtrunA17_Chr1g0167351 25.498 251 147 6 107 332 119 354 1.14e-12 69.7
Msa0433600 MtrunA17_Chr8g0345801 26.471 238 126 7 107 335 24 221 1.16e-12 67.8
Msa0433600 MtrunA17_Chr1g0176421 25.749 334 159 13 107 433 170 421 1.28e-12 69.7
Msa0433600 MtrunA17_Chr4g0061141 24.638 345 173 12 107 432 114 390 2.68e-12 68.9
Msa0433600 MtrunA17_Chr4g0059751 27.626 257 128 11 107 346 98 313 2.83e-12 68.2
Msa0433600 MtrunA17_Chr1g0167311 25.896 251 146 7 107 332 124 359 3.22e-12 68.2
Msa0433600 MtrunA17_Chr1g0201571 26.829 287 148 13 75 345 104 344 3.72e-12 68.2
Msa0433600 MtrunA17_Chr1g0203881 25.846 325 160 10 107 428 50 296 4.84e-12 67.8
Msa0433600 MtrunA17_Chr2g0286421 25.872 344 168 12 107 431 111 386 5.07e-12 67.8
Msa0433600 MtrunA17_Chr4g0030241 30.612 147 73 5 220 361 15 137 7.45e-12 63.9
Msa0433600 MtrunA17_Chr7g0258051 24.806 258 148 8 98 348 18 236 9.31e-12 67.0
Msa0433600 MtrunA17_Chr6g0453711 25.000 336 181 13 107 431 119 394 1.02e-11 67.0
Msa0433600 MtrunA17_Chr5g0396361 25.373 335 181 13 107 431 149 424 2.46e-11 65.9
Msa0433600 MtrunA17_Chr4g0066691 25.291 344 170 12 107 431 113 388 5.88e-11 64.3
Msa0433600 MtrunA17_Chr7g0218071 25.000 344 172 11 107 431 129 405 6.10e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0433600 AT4G32660.1 65.888 428 106 4 6 432 9 397 0.0 567
Msa0433600 AT4G32660.3 65.888 428 106 4 6 432 1 389 0.0 567
Msa0433600 AT4G32660.2 66.321 386 90 4 6 390 9 355 1.61e-179 505
Msa0433600 AT3G53570.1 58.520 446 128 8 9 431 32 443 6.15e-175 498
Msa0433600 AT3G53570.4 58.520 446 128 8 9 431 32 443 6.15e-175 498
Msa0433600 AT3G53570.2 58.520 446 128 8 9 431 32 443 6.15e-175 498
Msa0433600 AT3G53570.3 58.520 446 128 8 9 431 18 429 1.02e-174 497
Msa0433600 AT3G53570.5 58.520 446 128 8 9 431 18 429 1.02e-174 497
Msa0433600 AT4G24740.1 53.691 447 142 8 10 431 17 423 2.96e-160 459
Msa0433600 AT4G24740.7 58.312 391 126 6 43 431 30 385 4.08e-160 457
Msa0433600 AT4G32660.4 73.129 294 69 2 140 432 1 285 1.89e-157 446
Msa0433600 AT4G24740.6 63.720 328 105 5 107 431 4 320 7.89e-150 429
Msa0433600 AT4G24740.9 63.720 328 105 5 107 431 4 320 7.89e-150 429
Msa0433600 AT4G24740.2 63.720 328 105 5 107 431 4 320 7.89e-150 429
Msa0433600 AT4G24740.3 54.201 369 106 6 10 354 17 346 2.34e-132 385
Msa0433600 AT4G24740.5 67.600 250 69 3 107 354 4 243 1.91e-121 353
Msa0433600 AT4G24740.4 52.047 342 100 7 6 323 14 315 1.27e-111 331
Msa0433600 AT4G24740.10 64.623 212 70 4 223 431 8 217 1.28e-92 279
Msa0433600 AT4G24740.8 64.623 212 70 4 223 431 8 217 1.28e-92 279
Msa0433600 AT5G35980.2 31.405 363 180 11 107 430 131 463 9.51e-43 160
Msa0433600 AT5G35980.3 31.405 363 180 11 107 430 96 428 2.60e-42 160
Msa0433600 AT5G35980.1 31.405 363 180 11 107 430 131 463 3.06e-42 160
Msa0433600 AT3G53640.1 30.357 392 200 11 56 431 305 639 5.38e-41 154
Msa0433600 AT1G13350.3 30.435 391 199 12 56 430 497 830 8.51e-40 152
Msa0433600 AT1G73460.2 32.344 337 193 8 101 434 859 1163 8.64e-40 152
Msa0433600 AT1G73460.1 32.344 337 193 8 101 434 859 1163 8.64e-40 152
Msa0433600 AT1G73450.1 32.344 337 193 8 101 434 842 1146 8.91e-40 152
Msa0433600 AT1G13350.1 30.357 392 200 12 56 431 424 758 1.01e-39 152
Msa0433600 AT1G13350.2 30.357 392 200 12 56 431 451 785 1.27e-39 152
Msa0433600 AT3G25840.2 29.847 392 201 11 56 431 337 670 2.31e-39 150
Msa0433600 AT3G17750.1 32.249 338 194 8 98 434 829 1132 6.36e-39 150
Msa0433600 AT3G25840.1 29.847 392 201 11 56 431 599 932 2.91e-38 148
Msa0433600 AT4G35500.1 28.463 397 193 12 107 435 47 420 3.29e-38 144
Msa0433600 AT2G40120.1 30.861 337 190 8 98 429 263 561 1.11e-37 144
Msa0433600 AT4G35500.2 25.990 404 195 13 107 435 47 421 1.85e-28 117
Msa0433600 AT3G44850.1 38.462 143 73 4 107 243 54 187 7.90e-23 101
Msa0433600 AT3G44850.1 35.057 174 86 5 271 431 322 481 1.39e-22 100
Msa0433600 AT2G38620.2 28.406 345 173 15 107 431 13 303 7.93e-22 95.9
Msa0433600 AT3G53030.1 36.364 143 76 4 107 243 51 184 9.86e-22 98.2
Msa0433600 AT3G53030.1 33.714 175 89 3 271 432 307 467 3.77e-21 96.3
Msa0433600 AT5G22840.1 34.483 174 87 5 271 431 311 470 4.88e-21 95.9
Msa0433600 AT5G22840.1 36.364 143 76 4 107 243 54 187 1.59e-20 94.4
Msa0433600 AT1G76540.1 25.294 340 181 12 107 431 23 304 1.55e-20 92.0
Msa0433600 AT3G48750.1 25.152 330 189 9 107 432 13 288 7.19e-20 90.1
Msa0433600 AT3G54180.1 27.697 343 176 13 107 431 13 301 1.17e-19 89.7
Msa0433600 AT3G13530.1 30.804 224 110 6 107 323 29 214 1.30e-19 92.4
Msa0433600 AT2G17530.1 32.022 178 94 4 271 435 256 419 1.52e-19 90.9
Msa0433600 AT2G17530.1 34.965 143 78 4 107 243 47 180 1.16e-16 82.0
Msa0433600 AT2G17530.3 32.022 178 94 4 271 435 256 419 1.52e-19 90.9
Msa0433600 AT2G17530.3 34.965 143 78 4 107 243 47 180 1.16e-16 82.0
Msa0433600 AT4G13020.7 25.970 335 182 10 107 435 13 287 3.83e-19 89.0
Msa0433600 AT4G19110.2 27.300 337 169 13 107 432 13 284 3.89e-19 89.7
Msa0433600 AT4G19110.1 27.300 337 169 13 107 432 13 284 4.65e-19 89.7
Msa0433600 AT4G13020.6 25.970 335 182 10 107 435 13 287 4.83e-19 89.0
Msa0433600 AT4G13020.4 25.970 335 182 10 107 435 13 287 4.92e-19 89.0
Msa0433600 AT4G13020.1 25.970 335 182 10 107 435 13 287 5.13e-19 89.4
Msa0433600 AT4G11330.1 26.506 332 183 13 107 431 52 329 6.47e-19 88.6
Msa0433600 AT4G13020.2 25.970 335 182 10 107 435 21 295 6.64e-19 89.0
Msa0433600 AT4G13020.3 25.970 335 182 10 107 435 21 295 6.68e-19 89.0
Msa0433600 AT3G17850.1 31.950 241 137 8 107 336 891 1115 7.85e-19 90.1
Msa0433600 AT3G07980.1 31.250 224 109 7 107 323 29 214 9.71e-19 89.7
Msa0433600 AT3G07980.2 31.250 224 109 7 107 323 29 214 1.16e-18 89.4
Msa0433600 AT2G38620.4 30.579 242 111 9 194 431 53 241 1.43e-18 85.1
Msa0433600 AT1G20930.1 26.239 343 174 12 107 431 25 306 1.60e-18 86.3
Msa0433600 AT1G10210.2 25.826 333 185 12 107 431 41 319 2.10e-18 86.7
Msa0433600 AT1G10210.3 25.826 333 185 12 107 431 41 319 2.10e-18 86.7
Msa0433600 AT1G10210.1 25.826 333 185 12 107 431 41 319 2.10e-18 86.7
Msa0433600 AT5G63370.2 25.893 336 190 10 107 431 172 459 2.41e-18 87.4
Msa0433600 AT5G63370.3 25.893 336 190 10 107 431 172 459 2.41e-18 87.4
Msa0433600 AT1G01560.2 26.471 340 173 13 107 431 49 326 2.63e-18 86.7
Msa0433600 AT1G59580.2 26.506 332 184 11 107 431 41 319 3.02e-18 86.3
Msa0433600 AT1G59580.1 26.506 332 184 11 107 431 41 319 3.02e-18 86.3
Msa0433600 AT4G13020.8 26.254 339 185 11 107 435 13 296 3.75e-18 86.3
Msa0433600 AT4G13020.5 26.254 339 185 11 107 435 13 296 4.15e-18 86.7
Msa0433600 AT5G63370.7 26.190 336 189 11 107 431 306 593 4.83e-18 87.0
Msa0433600 AT5G63370.8 26.190 336 189 11 107 431 306 593 4.83e-18 87.0
Msa0433600 AT5G63370.4 26.190 336 189 11 107 431 306 593 4.83e-18 87.0
Msa0433600 AT5G63370.6 26.190 336 189 11 107 431 306 593 4.83e-18 87.0
Msa0433600 AT5G63370.1 26.190 336 189 11 107 431 306 593 4.83e-18 87.0
Msa0433600 AT4G01370.1 26.126 333 183 12 107 431 52 329 5.68e-18 85.5
Msa0433600 AT5G45430.1 26.706 337 171 13 107 432 13 284 2.40e-17 84.7
Msa0433600 AT5G45430.2 26.706 337 171 13 107 432 13 284 2.68e-17 84.3
Msa0433600 AT2G17530.2 34.965 143 78 4 107 243 47 180 3.91e-17 82.8
Msa0433600 AT2G17530.2 41.667 84 43 1 271 348 256 339 2.97e-13 71.2
Msa0433600 AT1G57870.3 25.656 343 187 12 98 431 83 366 8.69e-17 82.4
Msa0433600 AT1G57870.1 24.581 358 172 11 98 431 83 366 9.57e-17 82.4
Msa0433600 AT1G57870.4 24.581 358 172 11 98 431 83 366 9.57e-17 82.4
Msa0433600 AT1G57870.2 24.581 358 172 11 98 431 83 366 9.57e-17 82.4
Msa0433600 AT5G63610.1 30.252 238 115 9 212 433 133 335 1.76e-16 81.6
Msa0433600 AT5G19010.1 27.697 343 172 15 107 432 34 317 3.21e-16 81.3
Msa0433600 AT3G14720.1 27.628 333 185 12 107 432 34 317 7.04e-16 80.5
Msa0433600 AT1G01560.3 25.749 334 167 14 107 423 49 318 9.89e-16 78.6
Msa0433600 AT1G67580.1 25.150 334 192 9 107 432 415 698 1.02e-15 80.1
Msa0433600 AT1G67580.2 25.150 334 192 9 107 432 415 698 1.02e-15 80.1
Msa0433600 AT4G36450.1 25.076 331 187 10 107 431 41 316 1.09e-15 78.6
Msa0433600 AT1G09840.3 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.7 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.10 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.6 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.4 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.1 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.9 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.5 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.8 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT1G09840.2 24.302 358 173 11 98 431 84 367 1.28e-15 79.0
Msa0433600 AT2G18170.1 25.000 332 189 10 107 431 41 319 1.47e-15 78.2
Msa0433600 AT1G73670.1 25.661 378 204 13 69 431 66 381 1.92e-15 79.0
Msa0433600 AT3G45640.1 24.107 336 186 11 107 431 47 324 2.04e-15 77.8
Msa0433600 AT1G07880.2 24.925 333 187 11 107 431 42 319 2.31e-15 77.8
Msa0433600 AT3G14720.2 27.628 333 185 12 107 432 34 317 2.89e-15 77.8
Msa0433600 AT3G14720.3 27.628 333 185 12 107 432 34 317 2.89e-15 77.8
Msa0433600 AT1G48490.4 28.788 264 156 8 107 356 838 1083 3.36e-15 78.6
Msa0433600 AT1G48490.3 28.788 264 156 8 107 356 837 1082 3.41e-15 78.6
Msa0433600 AT1G48490.2 28.788 264 156 8 107 356 837 1082 3.41e-15 78.6
Msa0433600 AT1G48490.1 28.788 264 156 8 107 356 837 1082 3.41e-15 78.6
Msa0433600 AT4G18710.1 25.075 335 186 11 105 431 47 324 4.45e-15 77.0
Msa0433600 AT2G43790.1 23.442 337 188 12 107 432 72 349 4.86e-15 77.0
Msa0433600 AT4G19110.3 29.075 227 106 8 213 432 50 228 6.18e-15 76.6
Msa0433600 AT2G30980.1 24.279 416 235 16 26 431 11 356 8.99e-15 76.3
Msa0433600 AT1G50240.3 26.429 280 145 11 107 371 15 248 1.24e-14 77.0
Msa0433600 AT1G50240.2 26.429 280 145 11 107 371 15 248 1.24e-14 77.0
Msa0433600 AT3G18040.1 27.273 308 173 10 75 371 5 272 1.30e-14 76.3
Msa0433600 AT3G18040.4 27.273 308 173 10 75 371 114 381 1.40e-14 76.3
Msa0433600 AT3G18040.3 27.273 308 173 10 75 371 114 381 2.53e-14 75.5
Msa0433600 AT3G18040.5 27.124 306 172 10 77 371 2 267 2.55e-14 75.1
Msa0433600 AT2G42880.1 26.686 341 178 12 107 432 34 317 3.79e-14 75.1
Msa0433600 AT1G73690.1 25.000 336 177 14 107 431 20 291 3.91e-14 74.3
Msa0433600 AT2G42880.2 26.686 341 178 12 107 432 34 317 4.31e-14 74.3
Msa0433600 AT5G63370.5 27.888 251 132 10 107 345 306 519 5.06e-14 74.3
Msa0433600 AT5G63370.10 27.888 251 132 10 107 345 306 519 5.06e-14 74.3
Msa0433600 AT1G06390.2 24.478 335 188 12 105 431 77 354 6.48e-14 73.6
Msa0433600 AT1G06390.1 24.478 335 188 12 105 431 77 354 6.48e-14 73.6
Msa0433600 AT1G09000.1 27.391 230 122 7 107 326 78 272 6.84e-14 74.3
Msa0433600 AT5G63370.9 26.800 250 136 8 107 345 172 385 8.48e-14 73.2
Msa0433600 AT1G09000.2 27.391 230 122 7 107 326 78 272 8.96e-14 73.9
Msa0433600 AT1G01560.4 28.226 248 127 10 107 343 49 256 1.15e-13 71.6
Msa0433600 AT1G01560.1 28.226 248 127 10 107 343 49 256 1.15e-13 71.6
Msa0433600 AT1G53510.1 25.519 337 187 11 107 432 34 317 1.33e-13 73.2
Msa0433600 AT2G01450.3 25.220 341 198 12 99 432 18 308 1.85e-13 72.4
Msa0433600 AT2G01450.1 25.220 341 198 12 99 432 18 308 1.85e-13 72.4
Msa0433600 AT2G01450.2 25.220 341 198 12 99 432 18 308 1.85e-13 72.4
Msa0433600 AT2G01450.4 25.220 341 198 12 99 432 18 308 1.85e-13 72.4
Msa0433600 AT3G08730.1 27.632 228 120 8 107 328 143 331 2.32e-13 72.0
Msa0433600 AT3G08730.2 27.632 228 120 8 107 328 143 331 2.32e-13 72.0
Msa0433600 AT1G18150.3 27.609 297 164 11 69 354 80 336 2.35e-13 72.4
Msa0433600 AT1G18150.2 27.609 297 164 11 69 354 80 336 2.35e-13 72.4
Msa0433600 AT1G18150.1 27.609 297 164 11 69 354 80 336 2.35e-13 72.4
Msa0433600 AT3G08720.1 27.876 226 122 7 107 328 149 337 3.22e-13 71.6
Msa0433600 AT3G08720.3 27.876 226 122 7 107 328 149 337 3.22e-13 71.6
Msa0433600 AT3G08720.4 27.876 226 122 7 107 328 149 337 3.22e-13 71.6
Msa0433600 AT3G08720.2 27.876 226 122 7 107 328 149 337 3.22e-13 71.6
Msa0433600 AT1G08650.1 24.085 328 170 8 107 432 24 274 3.33e-13 70.1
Msa0433600 AT2G38620.3 28.295 258 132 12 107 344 13 237 6.37e-13 68.9
Msa0433600 AT2G38620.1 28.295 258 132 12 107 344 13 237 6.37e-13 68.9
Msa0433600 AT4G18710.2 24.803 254 149 8 105 351 41 259 6.81e-13 69.3
Msa0433600 AT3G04530.1 24.576 236 134 8 107 334 20 219 1.22e-12 68.6
Msa0433600 AT1G54960.1 25.150 334 159 10 107 430 77 329 1.36e-12 70.1
Msa0433600 AT1G54960.2 25.150 334 159 10 107 430 77 329 1.36e-12 70.1
Msa0433600 AT1G08650.2 25.909 220 129 4 107 324 24 211 1.94e-12 67.8
Msa0433600 AT4G04700.1 25.877 228 131 6 107 328 37 232 2.40e-12 68.9
Msa0433600 AT1G09840.11 27.064 218 108 7 220 431 68 240 3.44e-12 67.4
Msa0433600 AT4G10010.2 26.377 345 169 14 107 433 165 442 7.43e-12 67.8
Msa0433600 AT5G04510.2 24.783 230 141 8 105 329 51 253 8.66e-12 67.0
Msa0433600 AT5G04510.1 24.783 230 141 8 105 329 51 253 9.23e-12 67.4
Msa0433600 AT5G04510.3 24.348 230 142 8 105 329 51 253 1.30e-11 65.9
Msa0433600 AT5G64960.1 25.648 347 180 13 107 431 35 325 1.68e-11 66.6
Msa0433600 AT3G18040.2 28.846 208 105 7 172 371 12 184 2.18e-11 65.9
Msa0433600 AT5G23580.1 24.523 367 177 15 72 430 5 279 2.74e-11 65.9
Msa0433600 AT5G44290.2 25.446 224 116 7 216 433 245 423 4.50e-11 65.5
Msa0433600 AT5G44290.5 25.446 224 116 7 216 433 245 423 4.50e-11 65.5
Msa0433600 AT5G44290.4 25.446 224 116 7 216 433 245 423 4.50e-11 65.5
Msa0433600 AT5G44290.1 25.446 224 116 7 216 433 245 423 4.50e-11 65.5
Msa0433600 AT5G44290.3 25.446 224 116 7 216 433 245 423 4.50e-11 65.5
Msa0433600 AT5G44290.6 25.561 223 115 7 216 432 245 422 4.54e-11 65.5
Msa0433600 AT5G50860.2 24.709 344 172 12 107 431 123 398 5.76e-11 64.7
Msa0433600 AT5G44290.7 25.561 223 115 7 216 432 245 422 5.82e-11 64.7
Msa0433600 AT1G18670.2 25.797 345 170 13 107 431 140 418 7.61e-11 64.7
Msa0433600 AT5G50860.1 24.709 344 172 12 107 431 123 398 7.66e-11 64.7

Find 129 sgRNAs with CRISPR-Local

Find 327 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGATACCATTTACATTAA+TGG 0.152187 3_2:-86050079 None:intergenic
GTGGATCTTGTTCGTGAATT+TGG 0.181033 3_2:+86052147 Msa0433600:CDS
ACTCTATTGAACATAATTAT+TGG 0.190340 3_2:+86054566 Msa0433600:three_prime_UTR
GTTTCAGACTCATGAAAATT+TGG 0.209964 3_2:+86053767 Msa0433600:CDS
GCGATTAAGCTGATTGATTT+TGG 0.243544 3_2:+86052596 Msa0433600:CDS
ACCAACCACTGCCAAATTTC+TGG 0.248937 3_2:-86050267 None:intergenic
TGAATTTGGACGACAGCTTT+TGG 0.258689 3_2:+86052161 Msa0433600:CDS
AGATAAAATTCTCAGCAAAA+TGG 0.261730 3_2:+86051225 Msa0433600:intron
AATTCAACCATTAATGTAAA+TGG 0.274823 3_2:+86050072 Msa0433600:exon
AGAATAAACCGTTGGGAGTT+AGG 0.277518 3_2:-86049942 None:intergenic
TGTCAGATGAAACACAATTT+AGG 0.278233 3_2:+86052555 Msa0433600:CDS
GGCAATGATGGAGAGAGTTT+TGG 0.280611 3_2:+86053797 Msa0433600:CDS
TCACGATCGTCGTCTCTTCT+TGG 0.281498 3_2:-86050323 None:intergenic
CTCCCTTGAAACAGCTCCTT+CGG 0.283662 3_2:-86054081 None:intergenic
AGGCACCTTCGGTCGAGTTT+TGG 0.286156 3_2:+86051337 Msa0433600:CDS
TCCTGAATTGGTTCGATTAC+CGG 0.290840 3_2:+86051622 Msa0433600:CDS
CTCTTGATCATCCCTTCTTT+AGG 0.304316 3_2:+86054353 Msa0433600:CDS
TCCGGTAATCGAACCAATTC+AGG 0.307110 3_2:-86051623 None:intergenic
TCATTAACTGATTTGTTGTA+TGG 0.314065 3_2:+86054286 Msa0433600:CDS
AGAGCCCCTGAGGTTATCTT+AGG 0.322517 3_2:+86052674 Msa0433600:CDS
GCTTCAGGTCGGTGTGGATT+AGG 0.330715 3_2:-86052386 None:intergenic
TAACTCCCAACGGTTTATTC+TGG 0.343918 3_2:+86049944 Msa0433600:five_prime_UTR
GAAGAAGCTTGGTGATCTTA+AGG 0.349004 3_2:+86054118 Msa0433600:CDS
CGCCGAGATTAAAGACATAA+TGG 0.351983 3_2:-86050349 None:intergenic
CTCTGGTAAGCAAGGCCTAC+TGG 0.358152 3_2:+86054712 Msa0433600:three_prime_UTR
GGGACCTCTACCAGAGCATA+TGG 0.387839 3_2:+86053818 Msa0433600:CDS
GTAAATGGTATCTAATTTCA+TGG 0.390979 3_2:+86050087 Msa0433600:exon
TTACAATGCATATGTGATTC+CGG 0.403247 3_2:-86051641 None:intergenic
TTACATACCTTTGGAATTGA+AGG 0.405726 3_2:-86050169 None:intergenic
GAATAAACCGTTGGGAGTTA+GGG 0.422514 3_2:-86049941 None:intergenic
AATGCCTTGTGTTATTTGAA+TGG 0.424169 3_2:+86054395 Msa0433600:three_prime_UTR
TTTGGAGCACCTGGCAATGA+TGG 0.425144 3_2:+86053785 Msa0433600:CDS
TCCCTTGAAACAGCTCCTTC+GGG 0.428173 3_2:-86054080 None:intergenic
GCTAGTGCTGTAGGCACCTT+CGG 0.428753 3_2:+86051326 Msa0433600:CDS
CCAACCACTGCCAAATTTCT+GGG 0.430843 3_2:-86050266 None:intergenic
CACAATATCTCGCAGGGGTA+CGG 0.431103 3_2:+86054022 Msa0433600:intron
TGAACATAATTATTGGATAG+AGG 0.434262 3_2:+86054573 Msa0433600:three_prime_UTR
TTAAGTTGGAATCCTAAAGA+AGG 0.444665 3_2:-86054365 None:intergenic
GGAATCCCGTATCTTGTCTC+TGG 0.448674 3_2:+86049993 Msa0433600:five_prime_UTR
GGTATCTAATTTCATGGAAA+GGG 0.451585 3_2:+86050093 Msa0433600:CDS
GATAAAATTCTCAGCAAAAT+GGG 0.454575 3_2:+86051226 Msa0433600:intron
GGAAACGACCTCGTCTCGCT+TGG 0.458789 3_2:+86050125 Msa0433600:CDS
GAAACGACCTCGTCTCGCTT+GGG 0.459412 3_2:+86050126 Msa0433600:CDS
TATCAGGTCTTTGAGAAGCT+TGG 0.464813 3_2:+86052075 Msa0433600:intron
CTTGATCGCTACATAATCTC+TGG 0.464927 3_2:-86051378 None:intergenic
TCGTTACCTAAGATAACCTC+AGG 0.467009 3_2:-86052680 None:intergenic
GGTCATCTCCATGTGATTTG+TGG 0.473282 3_2:+86053615 Msa0433600:CDS
TTGGCGAGCAGTAATGCGTT+TGG 0.487197 3_2:-86054329 None:intergenic
ACTGGGACATCAATATTTGA+AGG 0.489134 3_2:+86054730 Msa0433600:three_prime_UTR
GGCCCGAAGGAGCTGTTTCA+AGG 0.489761 3_2:+86054078 Msa0433600:CDS
TGTAAAGCTTCCTAGTTGTA+AGG 0.498491 3_2:+86052440 Msa0433600:CDS
CGAACAAGATCCACAGGGAA+TGG 0.498629 3_2:-86052138 None:intergenic
GGCCATTATGTCTTTAATCT+CGG 0.499456 3_2:+86050347 Msa0433600:CDS
CAGAGATTATGTAGCGATCA+AGG 0.502779 3_2:+86051379 Msa0433600:CDS
TTTAGAAAATCAAATAAACT+TGG 0.502789 3_2:-86052099 None:intergenic
ACCTTTGGAATTGAAGGAGG+TGG 0.504072 3_2:-86050163 None:intergenic
GATCTTTGAACCATATGCTC+TGG 0.504088 3_2:-86053828 None:intergenic
AATAATTATGTTCAATAGAG+TGG 0.504744 3_2:-86054564 None:intergenic
TGGTATCTAATTTCATGGAA+AGG 0.505049 3_2:+86050092 Msa0433600:CDS
CCATGTGATTTGTGGAGTGT+TGG 0.505435 3_2:+86053623 Msa0433600:CDS
CAGCATGTTGCTAGTGCTGT+AGG 0.508712 3_2:+86051317 Msa0433600:CDS
AAACTCTCTCCATCATTGCC+AGG 0.512831 3_2:-86053794 None:intergenic
CCCAGAAATTTGGCAGTGGT+TGG 0.517994 3_2:+86050266 Msa0433600:CDS
GGATTTATCATTTATTGCAG+TGG 0.518698 3_2:+86054453 Msa0433600:three_prime_UTR
CATTGCAATGCAAATACAGT+TGG 0.521160 3_2:-86054522 None:intergenic
CGATCGTCGTCTCTTCTTGG+AGG 0.522170 3_2:-86050320 None:intergenic
TCTGGTAAGCAAGGCCTACT+GGG 0.526357 3_2:+86054713 Msa0433600:three_prime_UTR
TCATGAAAATTTGGAGCACC+TGG 0.527435 3_2:+86053776 Msa0433600:CDS
GAATTATGTTGTACTCAAGA+AGG 0.528671 3_2:+86054595 Msa0433600:three_prime_UTR
GAACAAGATCCACAGGGAAT+GGG 0.532174 3_2:-86052137 None:intergenic
TAAGTTGGAATCCTAAAGAA+GGG 0.537826 3_2:-86054364 None:intergenic
TGGAATCTGTAGCATGTCTG+TGG 0.543898 3_2:+86052181 Msa0433600:CDS
AAAATGACATTCCAGGTCTA+GGG 0.544013 3_2:+86053591 Msa0433600:intron
AGAAGGGATGATCAAGAGCT+TGG 0.544574 3_2:-86054348 None:intergenic
TTGTAGAAACAATGGAGCTA+TGG 0.547337 3_2:-86052643 None:intergenic
CGAGCAGTAATGCGTTTGGA+TGG 0.548284 3_2:-86054325 None:intergenic
GCTGTGTACAGATCCTGAAT+TGG 0.549041 3_2:+86051610 Msa0433600:intron
AGCTTAATCGCACTAGACTT+AGG 0.556964 3_2:-86052584 None:intergenic
GTAATTCCAGAGACAAGATA+CGG 0.557194 3_2:-86049999 None:intergenic
GCAAAATGGGTGAAGGTTAG+CGG 0.558808 3_2:+86051239 Msa0433600:intron
ATACAACAAATCAGTTAATG+AGG 0.558835 3_2:-86054284 None:intergenic
CAACTGTATTTGCATTGCAA+TGG 0.562108 3_2:+86054523 Msa0433600:three_prime_UTR
TGAACCATATGCTCTGGTAG+AGG 0.562280 3_2:-86053822 None:intergenic
ATAATGCCTTGTAGAAACAA+TGG 0.567287 3_2:-86052651 None:intergenic
ATAAATGCAGTGAAGAAGCT+TGG 0.570066 3_2:+86054107 Msa0433600:CDS
CATACCTTTGGAATTGAAGG+AGG 0.570410 3_2:-86050166 None:intergenic
AATTCACGAACAAGATCCAC+AGG 0.570749 3_2:-86052144 None:intergenic
GAGAACCAGAATAAACCGTT+GGG 0.571649 3_2:-86049949 None:intergenic
ATAGCTCCATTGTTTCTACA+AGG 0.573657 3_2:+86052645 Msa0433600:CDS
TCATGGAAAGGGAACGAACT+CGG 0.583235 3_2:+86050104 Msa0433600:CDS
CATTCTCATTGAGTTATGCA+CGG 0.584438 3_2:+86053649 Msa0433600:CDS
CACGTCATGTTGAGTCGTCA+AGG 0.590275 3_2:+86054260 Msa0433600:CDS
CTGTGTCGTCTGTGTAAGAA+CGG 0.591211 3_2:-86049971 None:intergenic
GGTACCCAGAAATTTGGCAG+TGG 0.594065 3_2:+86050262 Msa0433600:intron
TCCACCTCCTTCAATTCCAA+AGG 0.594074 3_2:+86050162 Msa0433600:CDS
GCCCGAAGGAGCTGTTTCAA+GGG 0.594720 3_2:+86054079 Msa0433600:CDS
TCAAATATTGATGTCCCAGT+AGG 0.595403 3_2:-86054727 None:intergenic
AGTTGTGGCGAATATGAAGA+TGG 0.597357 3_2:-86050027 None:intergenic
AGAGGGCACTCTGGTAAGCA+AGG 0.599176 3_2:+86054704 Msa0433600:three_prime_UTR
GGAGAACCAGAATAAACCGT+TGG 0.599407 3_2:-86049950 None:intergenic
ATATCATTCAGAGGGCACTC+TGG 0.602779 3_2:+86054695 Msa0433600:three_prime_UTR
ATTCTCAGCAAAATGGGTGA+AGG 0.606392 3_2:+86051232 Msa0433600:intron
AATTGAACCCTAACTCCCAA+CGG 0.606887 3_2:+86049934 Msa0433600:five_prime_UTR
ATACCAAGTACCTTACAACT+AGG 0.608609 3_2:-86052450 None:intergenic
TTGGCAGTGGTTGGTGACGG+TGG 0.610790 3_2:+86050275 Msa0433600:CDS
GTACTCAAGAAGGCTTGAGA+AGG 0.612803 3_2:+86054605 Msa0433600:three_prime_UTR
CCAACACTCCACAAATCACA+TGG 0.613754 3_2:-86053623 None:intergenic
TTTCTGGCTTCAGGTCGGTG+TGG 0.618594 3_2:-86052392 None:intergenic
AATTTGGCAGTGGTTGGTGA+CGG 0.628481 3_2:+86050272 Msa0433600:CDS
CGTCTTGTGAAGAGTGATGT+GGG 0.632369 3_2:+86051461 Msa0433600:CDS
CGTTACCTAAGATAACCTCA+GGG 0.633079 3_2:-86052679 None:intergenic
ACATGATGAATAAACGCTTG+AGG 0.635050 3_2:-86052215 None:intergenic
AGAAGAGACGACGATCGTGA+TGG 0.636898 3_2:+86050326 Msa0433600:CDS
TAATTCCAGAGACAAGATAC+GGG 0.637955 3_2:-86049998 None:intergenic
AGCGTGGATCACGACTAAGA+TGG 0.638785 3_2:+86054057 Msa0433600:CDS
ACATTCCAAAACTCGACCGA+AGG 0.639593 3_2:-86051342 None:intergenic
CGTTCTTACACAGACGACAC+AGG 0.644964 3_2:+86049972 Msa0433600:five_prime_UTR
GCTGCATCCCAAGCGAGACG+AGG 0.645412 3_2:-86050133 None:intergenic
ATGACATTCCAGGTCTAGGG+TGG 0.654171 3_2:+86053594 Msa0433600:intron
TTTGCATTGCAATGGATGAG+TGG 0.662275 3_2:+86054531 Msa0433600:three_prime_UTR
TCGCGATGCAGCAATGATCG+AGG 0.670546 3_2:+86051424 Msa0433600:CDS
TAAATACTGCCCATTCCCTG+TGG 0.681993 3_2:+86052128 Msa0433600:CDS
TCACGACTAAGATGGCCCGA+AGG 0.691921 3_2:+86054065 Msa0433600:CDS
ACGTCTTGTGAAGAGTGATG+TGG 0.700818 3_2:+86051460 Msa0433600:CDS
ATAACCATTCAAATAACACA+AGG 0.717871 3_2:-86054399 None:intergenic
AGAGTGATGTGGGATGCTCA+CGG 0.726542 3_2:+86051471 Msa0433600:CDS
AAGGCATTATAGAGCCCCTG+AGG 0.743741 3_2:+86052664 Msa0433600:CDS
GTTACCTAAGATAACCTCAG+GGG 0.756792 3_2:-86052678 None:intergenic
ATTCACGAACAAGATCCACA+GGG 0.786775 3_2:-86052143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTAAAATATTAGTTTGT+TGG + chr3_2:86050755-86050774 Msa0433600:intron 10.0%
!!! TTTCTTTAGTTTAATAAAAT+AGG + chr3_2:86051074-86051093 Msa0433600:intron 10.0%
!!! TTCTTTAGTTTAATAAAATA+GGG + chr3_2:86051075-86051094 Msa0433600:intron 10.0%
!!! TTTTGTATTATTTTGAAAAT+GGG + chr3_2:86051795-86051814 Msa0433600:intron 10.0%
!! AGAAAAAGTTAAAAATAATT+GGG - chr3_2:86052988-86053007 None:intergenic 10.0%
!! AAGAAAAAGTTAAAAATAAT+TGG - chr3_2:86052989-86053008 None:intergenic 10.0%
!!! TAATATTTTAAATAGCACAT+AGG - chr3_2:86050749-86050768 None:intergenic 15.0%
!!! TCTTTAGTTTAATAAAATAG+GGG + chr3_2:86051076-86051095 Msa0433600:intron 15.0%
!!! GTTTTGTATTATTTTGAAAA+TGG + chr3_2:86051794-86051813 Msa0433600:intron 15.0%
!! TTTAGAAAATCAAATAAACT+TGG - chr3_2:86052102-86052121 None:intergenic 15.0%
!!! TGTTTTATTATTATATCTCT+TGG + chr3_2:86052235-86052254 Msa0433600:intron 15.0%
!! TTTAATGAAAATTACTTGAT+TGG + chr3_2:86052520-86052539 Msa0433600:intron 15.0%
!!! TTTTATTTTTTTTTCGTGAA+AGG - chr3_2:86053337-86053356 None:intergenic 15.0%
!!! AAGTGATTTAATTAACTTTT+TGG - chr3_2:86053412-86053431 None:intergenic 15.0%
!! AATTATAATATTTAATCACC+TGG - chr3_2:86053956-86053975 None:intergenic 15.0%
!!! AAATTTTTATATCATTCAGA+GGG + chr3_2:86054687-86054706 Msa0433600:three_prime_UTR 15.0%
!! AATTCAACCATTAATGTAAA+TGG + chr3_2:86050072-86050091 Msa0433600:exon 20.0%
!! TTAGATACCATTTACATTAA+TGG - chr3_2:86050082-86050101 None:intergenic 20.0%
!! ACACATTAAATTGAGAAATA+GGG - chr3_2:86050458-86050477 None:intergenic 20.0%
!!! TTCATGGGTTTTATAAAATA+GGG - chr3_2:86050799-86050818 None:intergenic 20.0%
!!! TTTCATGGGTTTTATAAAAT+AGG - chr3_2:86050800-86050819 None:intergenic 20.0%
!!! AAGTTCGATTTTAAAAAAGA+GGG - chr3_2:86050829-86050848 None:intergenic 20.0%
!!! AAAGTTCGATTTTAAAAAAG+AGG - chr3_2:86050830-86050849 None:intergenic 20.0%
!!! ACAAGCTAATATTTTCAAAA+GGG - chr3_2:86050864-86050883 None:intergenic 20.0%
!!! AACAAGCTAATATTTTCAAA+AGG - chr3_2:86050865-86050884 None:intergenic 20.0%
!! AAAACAAATGTGAAAATAGA+GGG + chr3_2:86051046-86051065 Msa0433600:intron 20.0%
!!! CTTTAGTTTAATAAAATAGG+GGG + chr3_2:86051077-86051096 Msa0433600:intron 20.0%
!!! TAGAGTTTTTTTTTTTGGAA+AGG + chr3_2:86051518-86051537 Msa0433600:intron 20.0%
!!! TTTTATCAAAACAAACTAAC+TGG - chr3_2:86051717-86051736 None:intergenic 20.0%
!! ACAAAATTGCAACATAAATT+GGG - chr3_2:86051941-86051960 None:intergenic 20.0%
!! AACAAAATTGCAACATAAAT+TGG - chr3_2:86051942-86051961 None:intergenic 20.0%
!!! TAACTTTTTCTTATACACTT+TGG + chr3_2:86052997-86053016 Msa0433600:intron 20.0%
!!! TTTATTTTCACGAAAATTCA+CGG + chr3_2:86053136-86053155 Msa0433600:intron 20.0%
!!! ACACTATTTTTTTTGTTTGA+GGG - chr3_2:86053294-86053313 None:intergenic 20.0%
!!! AACACTATTTTTTTTGTTTG+AGG - chr3_2:86053295-86053314 None:intergenic 20.0%
!! ACTTATAAAAGAGAGTTTAA+AGG - chr3_2:86053375-86053394 None:intergenic 20.0%
!! ATGAAAAATGCTAAATAGTA+CGG - chr3_2:86053509-86053528 None:intergenic 20.0%
!!! TTTTCATTAGTAAAACTGTT+AGG + chr3_2:86053522-86053541 Msa0433600:intron 20.0%
!!! TATGTAATACATTTTCATCA+TGG + chr3_2:86053855-86053874 Msa0433600:intron 20.0%
!!! TTAAAACACAGTTAATTTGA+TGG - chr3_2:86053897-86053916 None:intergenic 20.0%
!! AATAATTATGTTCAATAGAG+TGG - chr3_2:86054567-86054586 None:intergenic 20.0%
!! ACTCTATTGAACATAATTAT+TGG + chr3_2:86054566-86054585 Msa0433600:three_prime_UTR 20.0%
!!! TTGGATACATTCTAATTTTT+TGG - chr3_2:86054661-86054680 None:intergenic 20.0%
!! GATATAAAAATTTCATCGTT+TGG - chr3_2:86054680-86054699 None:intergenic 20.0%
!!! GAAATTTTTATATCATTCAG+AGG + chr3_2:86054686-86054705 Msa0433600:three_prime_UTR 20.0%
!! CTAACAAAAATTGATAGTTG+TGG - chr3_2:86050045-86050064 None:intergenic 25.0%
! GTAAATGGTATCTAATTTCA+TGG + chr3_2:86050087-86050106 Msa0433600:exon 25.0%
! CACACATTAAATTGAGAAAT+AGG - chr3_2:86050459-86050478 None:intergenic 25.0%
!!! TGATTCAGCAAAATTGATTT+TGG + chr3_2:86050517-86050536 Msa0433600:intron 25.0%
!!! AGTTCGATTTTAAAAAAGAG+GGG - chr3_2:86050828-86050847 None:intergenic 25.0%
!! AAGCTAATATTTTCAAAAGG+GGG - chr3_2:86050862-86050881 None:intergenic 25.0%
!! CAAGCTAATATTTTCAAAAG+GGG - chr3_2:86050863-86050882 None:intergenic 25.0%
! TTGTCTTAAGATTCAACATT+GGG - chr3_2:86050945-86050964 None:intergenic 25.0%
! TTTGTCTTAAGATTCAACAT+TGG - chr3_2:86050946-86050965 None:intergenic 25.0%
!! CTCTATTTTCACATTTGTTT+TGG - chr3_2:86051047-86051066 None:intergenic 25.0%
! CAAAACAAATGTGAAAATAG+AGG + chr3_2:86051045-86051064 Msa0433600:intron 25.0%
!! ACTAGGCTTAATTATACTTT+TGG - chr3_2:86051104-86051123 None:intergenic 25.0%
! AACAAACAAACAAACAAACT+AGG - chr3_2:86051121-86051140 None:intergenic 25.0%
!!! TTTTTTCTCACTCTTCAATT+TGG + chr3_2:86051149-86051168 Msa0433600:intron 25.0%
!!! TTCAATTTGGTGTTTATGAA+AGG + chr3_2:86051162-86051181 Msa0433600:intron 25.0%
! AGATAAAATTCTCAGCAAAA+TGG + chr3_2:86051225-86051244 Msa0433600:intron 25.0%
! GATAAAATTCTCAGCAAAAT+GGG + chr3_2:86051226-86051245 Msa0433600:intron 25.0%
!!! GAAACAAGAAGTATATTTTC+TGG - chr3_2:86052411-86052430 None:intergenic 25.0%
!! TAGGTAACGAAATATGTTTT+TGG + chr3_2:86052693-86052712 Msa0433600:intron 25.0%
!!! TAACGAAATATGTTTTTGGT+TGG + chr3_2:86052697-86052716 Msa0433600:intron 25.0%
! TCATCAACAAGAAATAGATT+TGG - chr3_2:86053075-86053094 None:intergenic 25.0%
!!! TCTTCTGTATCATTAGTTTT+TGG + chr3_2:86054155-86054174 Msa0433600:intron 25.0%
!!! CTTCTGTATCATTAGTTTTT+GGG + chr3_2:86054156-86054175 Msa0433600:intron 25.0%
! CCTGCATAAAGAATAATAAT+CGG - chr3_2:86054231-86054250 None:intergenic 25.0%
! ATACAACAAATCAGTTAATG+AGG - chr3_2:86054287-86054306 None:intergenic 25.0%
!!! TCATTAACTGATTTGTTGTA+TGG + chr3_2:86054286-86054305 Msa0433600:CDS 25.0%
! ATAACCATTCAAATAACACA+AGG - chr3_2:86054402-86054421 None:intergenic 25.0%
!!! GACTACAATTTTGCTTTAAA+TGG + chr3_2:86054432-86054451 Msa0433600:three_prime_UTR 25.0%
! TGAACATAATTATTGGATAG+AGG + chr3_2:86054573-86054592 Msa0433600:three_prime_UTR 25.0%
TGGTATCTAATTTCATGGAA+AGG + chr3_2:86050092-86050111 Msa0433600:CDS 30.0%
GGTATCTAATTTCATGGAAA+GGG + chr3_2:86050093-86050112 Msa0433600:CDS 30.0%
!! TTACATACCTTTGGAATTGA+AGG - chr3_2:86050172-86050191 None:intergenic 30.0%
GAGGATAATTTACATACCTT+TGG - chr3_2:86050181-86050200 None:intergenic 30.0%
AATCAAGAGAGTGAAATTGA+AGG - chr3_2:86050203-86050222 None:intergenic 30.0%
!! ATTTTAGGTACCCAGAAATT+TGG + chr3_2:86050256-86050275 Msa0433600:intron 30.0%
GAAAGAAGTTAGTTACATCT+AGG - chr3_2:86050386-86050405 None:intergenic 30.0%
!! GCTGTTTTCATCAGTTATAT+TGG + chr3_2:86050573-86050592 Msa0433600:intron 30.0%
TAAGCACTTATTAGACTGTT+TGG - chr3_2:86050664-86050683 None:intergenic 30.0%
!!! ATTAAGGGTCTTTTTTGGAT+TGG - chr3_2:86050710-86050729 None:intergenic 30.0%
!!! CACAAATTAAGGGTCTTTTT+TGG - chr3_2:86050715-86050734 None:intergenic 30.0%
AGCATCAAGTCACAAATTAA+GGG - chr3_2:86050725-86050744 None:intergenic 30.0%
!! GTTCGATTTTAAAAAAGAGG+GGG - chr3_2:86050827-86050846 None:intergenic 30.0%
! AGCTAATATTTTCAAAAGGG+GGG - chr3_2:86050861-86050880 None:intergenic 30.0%
TGTCTTAAGATTCAACATTG+GGG - chr3_2:86050944-86050963 None:intergenic 30.0%
!!! GATACCTAAACTCACTTTTT+TGG + chr3_2:86050977-86050996 Msa0433600:intron 30.0%
GAATCCAAAAAAGTGAGTTT+AGG - chr3_2:86050984-86051003 None:intergenic 30.0%
! TTCCAAAAGCCACAATTTTT+AGG + chr3_2:86051001-86051020 Msa0433600:intron 30.0%
! TCCAAAAGCCACAATTTTTA+GGG + chr3_2:86051002-86051021 Msa0433600:intron 30.0%
!!! GTTTTTTGCCCTAAAAATTG+TGG - chr3_2:86051013-86051032 None:intergenic 30.0%
!!! TTTTTAGGGCAAAAAACATG+AGG + chr3_2:86051016-86051035 Msa0433600:intron 30.0%
!! TTTGGTGTTTATGAAAGGTT+TGG + chr3_2:86051167-86051186 Msa0433600:intron 30.0%
CCAAAAAAAAAAACTCTAGC+AGG - chr3_2:86051516-86051535 None:intergenic 30.0%
!!! CCTGCTAGAGTTTTTTTTTT+TGG + chr3_2:86051513-86051532 Msa0433600:intron 30.0%
TTACAATGCATATGTGATTC+CGG - chr3_2:86051644-86051663 None:intergenic 30.0%
CAAAACAAACTAACTGGATA+TGG - chr3_2:86051711-86051730 None:intergenic 30.0%
!!! TTTGTGCTGCTTGTTTTTTT+AGG + chr3_2:86051893-86051912 Msa0433600:intron 30.0%
!!! TTTTTTAGGTCAGGAAGTAT+AGG + chr3_2:86051907-86051926 Msa0433600:intron 30.0%
ATCTATGAATAAATCCCACA+TGG - chr3_2:86052009-86052028 None:intergenic 30.0%
! TTCCTTTCAACGCATTTTAA+TGG + chr3_2:86052049-86052068 Msa0433600:intron 30.0%
AAATTACTTGATTGGTACAG+AGG + chr3_2:86052528-86052547 Msa0433600:intron 30.0%
AATTACTTGATTGGTACAGA+GGG + chr3_2:86052529-86052548 Msa0433600:intron 30.0%
TGTCAGATGAAACACAATTT+AGG + chr3_2:86052555-86052574 Msa0433600:CDS 30.0%
ATAATGCCTTGTAGAAACAA+TGG - chr3_2:86052654-86052673 None:intergenic 30.0%
! CTACTGGAAACATTTTTAAC+AGG - chr3_2:86052803-86052822 None:intergenic 30.0%
AGGATAATATAAGATGAGCT+GGG - chr3_2:86052865-86052884 None:intergenic 30.0%
TAGGATAATATAAGATGAGC+TGG - chr3_2:86052866-86052885 None:intergenic 30.0%
ATAGTGAAGATCAAAGATCT+AGG - chr3_2:86052885-86052904 None:intergenic 30.0%
GCACAATCAAAATTGGAAAT+TGG - chr3_2:86052951-86052970 None:intergenic 30.0%
! CTTTTTCTTATACACTTTGG+TGG + chr3_2:86053000-86053019 Msa0433600:intron 30.0%
CATAATAATAGATACCGTTC+AGG - chr3_2:86053182-86053201 None:intergenic 30.0%
TGCAATTCAACCAAAGAAAA+AGG + chr3_2:86053221-86053240 Msa0433600:intron 30.0%
AATTCAACCAAAGAAAAAGG+TGG + chr3_2:86053224-86053243 Msa0433600:intron 30.0%
GGGAATTAATCTTAAGCAAA+CGG - chr3_2:86053274-86053293 None:intergenic 30.0%
! TTTTCCATCTATCAAGATGT+AGG + chr3_2:86053676-86053695 Msa0433600:intron 30.0%
GTTTCAGACTCATGAAAATT+TGG + chr3_2:86053767-86053786 Msa0433600:CDS 30.0%
CCGATTATTATTCTTTATGC+AGG + chr3_2:86054228-86054247 Msa0433600:intron 30.0%
! TAAGTTGGAATCCTAAAGAA+GGG - chr3_2:86054367-86054386 None:intergenic 30.0%
!! TTAAGTTGGAATCCTAAAGA+AGG - chr3_2:86054368-86054387 None:intergenic 30.0%
!!! AGGCATTTGACTTTTTAAGT+TGG - chr3_2:86054382-86054401 None:intergenic 30.0%
!! AATGCCTTGTGTTATTTGAA+TGG + chr3_2:86054395-86054414 Msa0433600:three_prime_UTR 30.0%
GGATTTATCATTTATTGCAG+TGG + chr3_2:86054453-86054472 Msa0433600:three_prime_UTR 30.0%
GAATTATGTTGTACTCAAGA+AGG + chr3_2:86054595-86054614 Msa0433600:three_prime_UTR 30.0%
TAATTCCAGAGACAAGATAC+GGG - chr3_2:86050001-86050020 None:intergenic 35.0%
GTAATTCCAGAGACAAGATA+CGG - chr3_2:86050002-86050021 None:intergenic 35.0%
GGCCATTATGTCTTTAATCT+CGG + chr3_2:86050347-86050366 Msa0433600:CDS 35.0%
TTAATGTGTGTTTCGTTCAC+TGG + chr3_2:86050469-86050488 Msa0433600:intron 35.0%
CAGCATCAAGTCACAAATTA+AGG - chr3_2:86050726-86050745 None:intergenic 35.0%
! GCTAAAAATCACCATTTTGG+GGG - chr3_2:86050917-86050936 None:intergenic 35.0%
! CGCTAAAAATCACCATTTTG+GGG - chr3_2:86050918-86050937 None:intergenic 35.0%
! GCGCTAAAAATCACCATTTT+GGG - chr3_2:86050919-86050938 None:intergenic 35.0%
! AGCGCTAAAAATCACCATTT+TGG - chr3_2:86050920-86050939 None:intergenic 35.0%
ATTATATGGGTCTTCAACTC+AGG - chr3_2:86051751-86051770 None:intergenic 35.0%
GTTGAAGACCCATATAATAC+CGG + chr3_2:86051753-86051772 Msa0433600:intron 35.0%
TTGAAGACCCATATAATACC+GGG + chr3_2:86051754-86051773 Msa0433600:intron 35.0%
GTGGGATTTATTCATAGATC+TGG + chr3_2:86052010-86052029 Msa0433600:intron 35.0%
CACCATTAAAATGCGTTGAA+AGG - chr3_2:86052054-86052073 None:intergenic 35.0%
!!! CGCATTTTAATGGTGTTATC+AGG + chr3_2:86052059-86052078 Msa0433600:intron 35.0%
ACATGATGAATAAACGCTTG+AGG - chr3_2:86052218-86052237 None:intergenic 35.0%
!!! TATATTTTCTGGCTTCAGGT+CGG - chr3_2:86052400-86052419 None:intergenic 35.0%
!!! GAAGTATATTTTCTGGCTTC+AGG - chr3_2:86052404-86052423 None:intergenic 35.0%
TGTAAAGCTTCCTAGTTGTA+AGG + chr3_2:86052440-86052459 Msa0433600:CDS 35.0%
ATACCAAGTACCTTACAACT+AGG - chr3_2:86052453-86052472 None:intergenic 35.0%
!! GCGATTAAGCTGATTGATTT+TGG + chr3_2:86052596-86052615 Msa0433600:CDS 35.0%
TTGTAGAAACAATGGAGCTA+TGG - chr3_2:86052646-86052665 None:intergenic 35.0%
!! ATAGCTCCATTGTTTCTACA+AGG + chr3_2:86052645-86052664 Msa0433600:CDS 35.0%
ATATAAGATGAGCTGGGAAA+TGG - chr3_2:86052859-86052878 None:intergenic 35.0%
TGTCAGTCATTACAGTACAA+AGG - chr3_2:86052923-86052942 None:intergenic 35.0%
! CATGAGAGCACAATCAAAAT+TGG - chr3_2:86052958-86052977 None:intergenic 35.0%
!! TTTTGATTGTGCTCTCATGA+TGG + chr3_2:86052959-86052978 Msa0433600:intron 35.0%
! AAGCGAAGTGCTATATAGTA+CGG + chr3_2:86053111-86053130 Msa0433600:intron 35.0%
GAACATATAAGCAACCTGAA+CGG + chr3_2:86053165-86053184 Msa0433600:intron 35.0%
AACGGTGCAACAAATTGAAA+CGG - chr3_2:86053256-86053275 None:intergenic 35.0%
! TGCATCTAAAATGACATTCC+AGG + chr3_2:86053584-86053603 Msa0433600:intron 35.0%
TAAAATGACATTCCAGGTCT+AGG + chr3_2:86053590-86053609 Msa0433600:intron 35.0%
AAAATGACATTCCAGGTCTA+GGG + chr3_2:86053591-86053610 Msa0433600:intron 35.0%
CATTCTCATTGAGTTATGCA+CGG + chr3_2:86053649-86053668 Msa0433600:CDS 35.0%
!! ATGTAGGCATGTTTTGAATC+TGG + chr3_2:86053692-86053711 Msa0433600:intron 35.0%
!!! TGGTTTTAGCATTCTAACTG+TGG + chr3_2:86053721-86053740 Msa0433600:intron 35.0%
! TAACTGTGGAACTTTTGACA+GGG + chr3_2:86053735-86053754 Msa0433600:intron 35.0%
!! TAAGTTATGAAGCATTGACC+AGG + chr3_2:86053935-86053954 Msa0433600:intron 35.0%
ACGGAAAAATATTTCAAGCG+TGG + chr3_2:86054041-86054060 Msa0433600:CDS 35.0%
ATAAATGCAGTGAAGAAGCT+TGG + chr3_2:86054107-86054126 Msa0433600:CDS 35.0%
CATTGCAATGCAAATACAGT+TGG - chr3_2:86054525-86054544 None:intergenic 35.0%
CAACTGTATTTGCATTGCAA+TGG + chr3_2:86054523-86054542 Msa0433600:three_prime_UTR 35.0%
TCAAATATTGATGTCCCAGT+AGG - chr3_2:86054730-86054749 None:intergenic 35.0%
ACTGGGACATCAATATTTGA+AGG + chr3_2:86054730-86054749 Msa0433600:three_prime_UTR 35.0%
AATTGAACCCTAACTCCCAA+CGG + chr3_2:86049934-86049953 Msa0433600:five_prime_UTR 40.0%
GAATAAACCGTTGGGAGTTA+GGG - chr3_2:86049944-86049963 None:intergenic 40.0%
AGAATAAACCGTTGGGAGTT+AGG - chr3_2:86049945-86049964 None:intergenic 40.0%
TAACTCCCAACGGTTTATTC+TGG + chr3_2:86049944-86049963 Msa0433600:five_prime_UTR 40.0%
GAGAACCAGAATAAACCGTT+GGG - chr3_2:86049952-86049971 None:intergenic 40.0%
AGTTGTGGCGAATATGAAGA+TGG - chr3_2:86050030-86050049 None:intergenic 40.0%
!! CATACCTTTGGAATTGAAGG+AGG - chr3_2:86050169-86050188 None:intergenic 40.0%
CAAGAGAGTGAAATTGAAGG+AGG - chr3_2:86050200-86050219 None:intergenic 40.0%
CGCCGAGATTAAAGACATAA+TGG - chr3_2:86050352-86050371 None:intergenic 40.0%
AATAAGCTGAAAACAGCTCG+TGG + chr3_2:86050608-86050627 Msa0433600:intron 40.0%
!!! TGTTGGCTTGATTGCACTTT+TGG + chr3_2:86050772-86050791 Msa0433600:intron 40.0%
!! AAAGAGGGGGCTATTTTCAT+GGG - chr3_2:86050814-86050833 None:intergenic 40.0%
!! AAAAGAGGGGGCTATTTTCA+TGG - chr3_2:86050815-86050834 None:intergenic 40.0%
!! ATTTTGGGGGCAAAAAGGAT+GGG - chr3_2:86050904-86050923 None:intergenic 40.0%
! GCCCTAAAAATTGTGGCTTT+TGG - chr3_2:86051006-86051025 None:intergenic 40.0%
TTAGGGCAAAAAACATGAGG+CGG + chr3_2:86051019-86051038 Msa0433600:intron 40.0%
ATTCTCAGCAAAATGGGTGA+AGG + chr3_2:86051232-86051251 Msa0433600:intron 40.0%
CTTGATCGCTACATAATCTC+TGG - chr3_2:86051381-86051400 None:intergenic 40.0%
CAGAGATTATGTAGCGATCA+AGG + chr3_2:86051379-86051398 Msa0433600:CDS 40.0%
AAAGGATACCTGCTAGAGTT+TGG + chr3_2:86051536-86051555 Msa0433600:intron 40.0%
ATCAGTAACCAAACTCTAGC+AGG - chr3_2:86051547-86051566 None:intergenic 40.0%
!! TCCTGAATTGGTTCGATTAC+CGG + chr3_2:86051622-86051641 Msa0433600:CDS 40.0%
! TGGGTGTCATCATTCATGAT+TGG + chr3_2:86051814-86051833 Msa0433600:intron 40.0%
! GGGTGTCATCATTCATGATT+GGG + chr3_2:86051815-86051834 Msa0433600:intron 40.0%
AGAACAAGTAGACTATGTGC+AGG - chr3_2:86051873-86051892 None:intergenic 40.0%
!!! GCTGCTTGTTTTTTTAGGTC+AGG + chr3_2:86051898-86051917 Msa0433600:intron 40.0%
TATGTACACACATGTCCATG+TGG + chr3_2:86051991-86052010 Msa0433600:intron 40.0%
ATGTACACACATGTCCATGT+GGG + chr3_2:86051992-86052011 Msa0433600:intron 40.0%
TCATAGATCTGGAAACTGAG+TGG + chr3_2:86052021-86052040 Msa0433600:intron 40.0%
! TATCAGGTCTTTGAGAAGCT+TGG + chr3_2:86052075-86052094 Msa0433600:intron 40.0%
ATTCACGAACAAGATCCACA+GGG - chr3_2:86052146-86052165 None:intergenic 40.0%
AATTCACGAACAAGATCCAC+AGG - chr3_2:86052147-86052166 None:intergenic 40.0%
GTGGATCTTGTTCGTGAATT+TGG + chr3_2:86052147-86052166 Msa0433600:CDS 40.0%
! TGAATTTGGACGACAGCTTT+TGG + chr3_2:86052161-86052180 Msa0433600:CDS 40.0%
ACAAAGATACACTGCATCCT+GGG - chr3_2:86052304-86052323 None:intergenic 40.0%
AACAAAGATACACTGCATCC+TGG - chr3_2:86052305-86052324 None:intergenic 40.0%
! CTTCCTAGTTGTAAGGTACT+TGG + chr3_2:86052447-86052466 Msa0433600:intron 40.0%
AGCTTAATCGCACTAGACTT+AGG - chr3_2:86052587-86052606 None:intergenic 40.0%
GTTACCTAAGATAACCTCAG+GGG - chr3_2:86052681-86052700 None:intergenic 40.0%
CGTTACCTAAGATAACCTCA+GGG - chr3_2:86052682-86052701 None:intergenic 40.0%
TCGTTACCTAAGATAACCTC+AGG - chr3_2:86052683-86052702 None:intergenic 40.0%
!!! GTTTTTGGTTGGTCACAATG+TGG + chr3_2:86052708-86052727 Msa0433600:intron 40.0%
! AGCGAAGTGCTATATAGTAC+GGG + chr3_2:86053112-86053131 Msa0433600:intron 40.0%
GCTAAATAGTACGGAACTTG+TGG - chr3_2:86053500-86053519 None:intergenic 40.0%
CATGCCTACATCTTGATAGA+TGG - chr3_2:86053683-86053702 None:intergenic 40.0%
!! TGTTTTGAATCTGGAACAGC+TGG + chr3_2:86053701-86053720 Msa0433600:intron 40.0%
! CTAACTGTGGAACTTTTGAC+AGG + chr3_2:86053734-86053753 Msa0433600:intron 40.0%
! TCATGAAAATTTGGAGCACC+TGG + chr3_2:86053776-86053795 Msa0433600:CDS 40.0%
!! GCAATGATGGAGAGAGTTTT+GGG + chr3_2:86053798-86053817 Msa0433600:CDS 40.0%
GATCTTTGAACCATATGCTC+TGG - chr3_2:86053831-86053850 None:intergenic 40.0%
TTTGCTTCACAATATCTCGC+AGG + chr3_2:86054015-86054034 Msa0433600:intron 40.0%
TTGCTTCACAATATCTCGCA+GGG + chr3_2:86054016-86054035 Msa0433600:intron 40.0%
! GAAGAAGCTTGGTGATCTTA+AGG + chr3_2:86054118-86054137 Msa0433600:CDS 40.0%
CTCTTGATCATCCCTTCTTT+AGG + chr3_2:86054353-86054372 Msa0433600:CDS 40.0%
TTTGCATTGCAATGGATGAG+TGG + chr3_2:86054531-86054550 Msa0433600:three_prime_UTR 40.0%
GGAGAACCAGAATAAACCGT+TGG - chr3_2:86049953-86049972 None:intergenic 45.0%
CTGTGTCGTCTGTGTAAGAA+CGG - chr3_2:86049974-86049993 None:intergenic 45.0%
TCATGGAAAGGGAACGAACT+CGG + chr3_2:86050104-86050123 Msa0433600:CDS 45.0%
TCCACCTCCTTCAATTCCAA+AGG + chr3_2:86050162-86050181 Msa0433600:CDS 45.0%
!! ACCTTTGGAATTGAAGGAGG+TGG - chr3_2:86050166-86050185 None:intergenic 45.0%
CCAACCACTGCCAAATTTCT+GGG - chr3_2:86050269-86050288 None:intergenic 45.0%
ACCAACCACTGCCAAATTTC+TGG - chr3_2:86050270-86050289 None:intergenic 45.0%
!! AATTTGGCAGTGGTTGGTGA+CGG + chr3_2:86050272-86050291 Msa0433600:CDS 45.0%
!! CATTTTGGGGGCAAAAAGGA+TGG - chr3_2:86050905-86050924 None:intergenic 45.0%
! CATCCTTTTTGCCCCCAAAA+TGG + chr3_2:86050903-86050922 Msa0433600:intron 45.0%
!! TCACCATTTTGGGGGCAAAA+AGG - chr3_2:86050909-86050928 None:intergenic 45.0%
TAGGGCAAAAAACATGAGGC+GGG + chr3_2:86051020-86051039 Msa0433600:intron 45.0%
GCAAAATGGGTGAAGGTTAG+CGG + chr3_2:86051239-86051258 Msa0433600:intron 45.0%
ACATTCCAAAACTCGACCGA+AGG - chr3_2:86051345-86051364 None:intergenic 45.0%
!!! TCGGTCGAGTTTTGGAATGT+TGG + chr3_2:86051345-86051364 Msa0433600:CDS 45.0%
!!! CGGTCGAGTTTTGGAATGTT+GGG + chr3_2:86051346-86051365 Msa0433600:CDS 45.0%
ACGTCTTGTGAAGAGTGATG+TGG + chr3_2:86051460-86051479 Msa0433600:CDS 45.0%
CGTCTTGTGAAGAGTGATGT+GGG + chr3_2:86051461-86051480 Msa0433600:CDS 45.0%
GCTGTGTACAGATCCTGAAT+TGG + chr3_2:86051610-86051629 Msa0433600:intron 45.0%
TCCGGTAATCGAACCAATTC+AGG - chr3_2:86051626-86051645 None:intergenic 45.0%
AAGACCCATATAATACCGGG+TGG + chr3_2:86051757-86051776 Msa0433600:intron 45.0%
ACAAGTAGACTATGTGCAGG+TGG - chr3_2:86051870-86051889 None:intergenic 45.0%
TAAATACTGCCCATTCCCTG+TGG + chr3_2:86052128-86052147 Msa0433600:CDS 45.0%
GAACAAGATCCACAGGGAAT+GGG - chr3_2:86052140-86052159 None:intergenic 45.0%
TGGAATCTGTAGCATGTCTG+TGG + chr3_2:86052181-86052200 Msa0433600:CDS 45.0%
GGGACAAACTAAGCAAGCTA+AGG - chr3_2:86052284-86052303 None:intergenic 45.0%
!! TAGCTTGCTTAGTTTGTCCC+AGG + chr3_2:86052284-86052303 Msa0433600:intron 45.0%
GTCAAGAACGACATTTGCTC+TGG - chr3_2:86052763-86052782 None:intergenic 45.0%
!! GTGCTGACCACCTTTTTCTT+TGG - chr3_2:86053234-86053253 None:intergenic 45.0%
CTTGTGGCCACGAAAATTCA+CGG - chr3_2:86053484-86053503 None:intergenic 45.0%
GGTCATCTCCATGTGATTTG+TGG + chr3_2:86053615-86053634 Msa0433600:CDS 45.0%
CCAACACTCCACAAATCACA+TGG - chr3_2:86053626-86053645 None:intergenic 45.0%
! CCATGTGATTTGTGGAGTGT+TGG + chr3_2:86053623-86053642 Msa0433600:CDS 45.0%
CTCATTGAGTTATGCACGGT+TGG + chr3_2:86053653-86053672 Msa0433600:intron 45.0%
AAACTCTCTCCATCATTGCC+AGG - chr3_2:86053797-86053816 None:intergenic 45.0%
!! GGCAATGATGGAGAGAGTTT+TGG + chr3_2:86053797-86053816 Msa0433600:CDS 45.0%
TGAACCATATGCTCTGGTAG+AGG - chr3_2:86053825-86053844 None:intergenic 45.0%
TGCTTCACAATATCTCGCAG+GGG + chr3_2:86054017-86054036 Msa0433600:intron 45.0%
AGAAGGGATGATCAAGAGCT+TGG - chr3_2:86054351-86054370 None:intergenic 45.0%
GTACTCAAGAAGGCTTGAGA+AGG + chr3_2:86054605-86054624 Msa0433600:three_prime_UTR 45.0%
!! ATATCATTCAGAGGGCACTC+TGG + chr3_2:86054695-86054714 Msa0433600:three_prime_UTR 45.0%
!!! TAATTTTAATTTGAAATTTT+AGG + chr3_2:86050241-86050260 Msa0433600:intron 5.0%
CGTTCTTACACAGACGACAC+AGG + chr3_2:86049972-86049991 Msa0433600:five_prime_UTR 50.0%
GGAATCCCGTATCTTGTCTC+TGG + chr3_2:86049993-86050012 Msa0433600:five_prime_UTR 50.0%
GGTACCCAGAAATTTGGCAG+TGG + chr3_2:86050262-86050281 Msa0433600:intron 50.0%
CCCAGAAATTTGGCAGTGGT+TGG + chr3_2:86050266-86050285 Msa0433600:CDS 50.0%
TCACGATCGTCGTCTCTTCT+TGG - chr3_2:86050326-86050345 None:intergenic 50.0%
AGAAGAGACGACGATCGTGA+TGG + chr3_2:86050326-86050345 Msa0433600:CDS 50.0%
AGGGCAAAAAACATGAGGCG+GGG + chr3_2:86051021-86051040 Msa0433600:intron 50.0%
CAGCATGTTGCTAGTGCTGT+AGG + chr3_2:86051317-86051336 Msa0433600:CDS 50.0%
AGAGTGATGTGGGATGCTCA+CGG + chr3_2:86051471-86051490 Msa0433600:CDS 50.0%
ATGGGTCTTCAACTCAGGTC+AGG - chr3_2:86051746-86051765 None:intergenic 50.0%
ACCCATATAATACCGGGTGG+TGG + chr3_2:86051760-86051779 Msa0433600:intron 50.0%
CCCACCACCCGGTATTATAT+GGG - chr3_2:86051764-86051783 None:intergenic 50.0%
CCCATATAATACCGGGTGGT+GGG + chr3_2:86051761-86051780 Msa0433600:intron 50.0%
CCATATAATACCGGGTGGTG+GGG + chr3_2:86051762-86051781 Msa0433600:intron 50.0%
CGAACAAGATCCACAGGGAA+TGG - chr3_2:86052141-86052160 None:intergenic 50.0%
! AAGGCATTATAGAGCCCCTG+AGG + chr3_2:86052664-86052683 Msa0433600:CDS 50.0%
AGAGCCCCTGAGGTTATCTT+AGG + chr3_2:86052674-86052693 Msa0433600:CDS 50.0%
CAGAGATGTGATGCAGCTAC+TGG - chr3_2:86052819-86052838 None:intergenic 50.0%
CAGTAGCTGCATCACATCTC+TGG + chr3_2:86052817-86052836 Msa0433600:intron 50.0%
TTCACGGACAGGCTAAACTG+CGG - chr3_2:86053468-86053487 None:intergenic 50.0%
! AGCCTGTCCGTGAATTTTCG+TGG + chr3_2:86053474-86053493 Msa0433600:intron 50.0%
ATGACATTCCAGGTCTAGGG+TGG + chr3_2:86053594-86053613 Msa0433600:intron 50.0%
! CTGTGGAACTTTTGACAGGG+AGG + chr3_2:86053738-86053757 Msa0433600:intron 50.0%
! TTTGGAGCACCTGGCAATGA+TGG + chr3_2:86053785-86053804 Msa0433600:CDS 50.0%
CACAATATCTCGCAGGGGTA+CGG + chr3_2:86054022-86054041 Msa0433600:intron 50.0%
AGCGTGGATCACGACTAAGA+TGG + chr3_2:86054057-86054076 Msa0433600:CDS 50.0%
TCCCTTGAAACAGCTCCTTC+GGG - chr3_2:86054083-86054102 None:intergenic 50.0%
CTCCCTTGAAACAGCTCCTT+CGG - chr3_2:86054084-86054103 None:intergenic 50.0%
CACGTCATGTTGAGTCGTCA+AGG + chr3_2:86054260-86054279 Msa0433600:CDS 50.0%
CGAGCAGTAATGCGTTTGGA+TGG - chr3_2:86054328-86054347 None:intergenic 50.0%
TTGGCGAGCAGTAATGCGTT+TGG - chr3_2:86054332-86054351 None:intergenic 50.0%
TCTGGTAAGCAAGGCCTACT+GGG + chr3_2:86054713-86054732 Msa0433600:three_prime_UTR 50.0%
GAAACGACCTCGTCTCGCTT+GGG + chr3_2:86050126-86050145 Msa0433600:CDS 55.0%
CGATCGTCGTCTCTTCTTGG+AGG - chr3_2:86050323-86050342 None:intergenic 55.0%
! GGGGGCAAAAAGGATGGGTT+GGG - chr3_2:86050899-86050918 None:intergenic 55.0%
TGGGGGCAAAAAGGATGGGT+TGG - chr3_2:86050900-86050919 None:intergenic 55.0%
GCTAGTGCTGTAGGCACCTT+CGG + chr3_2:86051326-86051345 Msa0433600:CDS 55.0%
! AGGCACCTTCGGTCGAGTTT+TGG + chr3_2:86051337-86051356 Msa0433600:CDS 55.0%
TCGCGATGCAGCAATGATCG+AGG + chr3_2:86051424-86051443 Msa0433600:CDS 55.0%
CCCCACCACCCGGTATTATA+TGG - chr3_2:86051765-86051784 None:intergenic 55.0%
!! ATAATACCGGGTGGTGGGGT+AGG + chr3_2:86051766-86051785 Msa0433600:intron 55.0%
!! TAATACCGGGTGGTGGGGTA+GGG + chr3_2:86051767-86051786 Msa0433600:intron 55.0%
GCTTCAGGTCGGTGTGGATT+AGG - chr3_2:86052389-86052408 None:intergenic 55.0%
!! TTTCTGGCTTCAGGTCGGTG+TGG - chr3_2:86052395-86052414 None:intergenic 55.0%
TGAGCTGGGAAATGGTCGCT+GGG - chr3_2:86052851-86052870 None:intergenic 55.0%
ATGAGCTGGGAAATGGTCGC+TGG - chr3_2:86052852-86052871 None:intergenic 55.0%
GGCCACGAAAATTCACGGAC+AGG - chr3_2:86053479-86053498 None:intergenic 55.0%
GGGACCTCTACCAGAGCATA+TGG + chr3_2:86053818-86053837 Msa0433600:CDS 55.0%
TCACGACTAAGATGGCCCGA+AGG + chr3_2:86054065-86054084 Msa0433600:CDS 55.0%
! GCCCGAAGGAGCTGTTTCAA+GGG + chr3_2:86054079-86054098 Msa0433600:CDS 55.0%
!! AGAGGGCACTCTGGTAAGCA+AGG + chr3_2:86054704-86054723 Msa0433600:three_prime_UTR 55.0%
CTCTGGTAAGCAAGGCCTAC+TGG + chr3_2:86054712-86054731 Msa0433600:three_prime_UTR 55.0%
GGAAACGACCTCGTCTCGCT+TGG + chr3_2:86050125-86050144 Msa0433600:CDS 60.0%
!! TTGGCAGTGGTTGGTGACGG+TGG + chr3_2:86050275-86050294 Msa0433600:CDS 60.0%
!! AATACCGGGTGGTGGGGTAG+GGG + chr3_2:86051768-86051787 Msa0433600:intron 60.0%
GGAGATGACCACCCTAGACC+TGG - chr3_2:86053605-86053624 None:intergenic 60.0%
! GGCCCGAAGGAGCTGTTTCA+AGG + chr3_2:86054078-86054097 Msa0433600:CDS 60.0%
GCTGCATCCCAAGCGAGACG+AGG - chr3_2:86050136-86050155 None:intergenic 65.0%
CTATCCCCTACCCCACCACC+CGG - chr3_2:86051775-86051794 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 86049912 86054774 86049912 ID=Msa0433600;Name=Msa0433600
chr3_2 mRNA 86049912 86054774 86049912 ID=Msa0433600-mRNA-1;Parent=Msa0433600;Name=Msa0433600-mRNA-1;_AED=0.12;_eAED=0.12;_QI=179|0.8|0.81|1|1|1|11|387|435
chr3_2 exon 86049912 86050183 86049912 ID=Msa0433600-mRNA-1:exon:24765;Parent=Msa0433600-mRNA-1
chr3_2 exon 86050263 86050389 86050263 ID=Msa0433600-mRNA-1:exon:24766;Parent=Msa0433600-mRNA-1
chr3_2 exon 86051240 86051492 86051240 ID=Msa0433600-mRNA-1:exon:24767;Parent=Msa0433600-mRNA-1
chr3_2 exon 86051611 86051659 86051611 ID=Msa0433600-mRNA-1:exon:24768;Parent=Msa0433600-mRNA-1
chr3_2 exon 86052081 86052222 86052081 ID=Msa0433600-mRNA-1:exon:24769;Parent=Msa0433600-mRNA-1
chr3_2 exon 86052370 86052461 86052370 ID=Msa0433600-mRNA-1:exon:24770;Parent=Msa0433600-mRNA-1
chr3_2 exon 86052548 86052695 86052548 ID=Msa0433600-mRNA-1:exon:24771;Parent=Msa0433600-mRNA-1
chr3_2 exon 86053606 86053670 86053606 ID=Msa0433600-mRNA-1:exon:24772;Parent=Msa0433600-mRNA-1
chr3_2 exon 86053756 86053853 86053756 ID=Msa0433600-mRNA-1:exon:24773;Parent=Msa0433600-mRNA-1
chr3_2 exon 86054037 86054139 86054037 ID=Msa0433600-mRNA-1:exon:24774;Parent=Msa0433600-mRNA-1
chr3_2 exon 86054250 86054774 86054250 ID=Msa0433600-mRNA-1:exon:24775;Parent=Msa0433600-mRNA-1
chr3_2 five_prime_UTR 86049912 86050090 86049912 ID=Msa0433600-mRNA-1:five_prime_utr;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86050091 86050183 86050091 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86050263 86050389 86050263 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86051240 86051492 86051240 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86051611 86051659 86051611 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86052081 86052222 86052081 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86052370 86052461 86052370 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86052548 86052695 86052548 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86053606 86053670 86053606 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86053756 86053853 86053756 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86054037 86054139 86054037 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 CDS 86054250 86054387 86054250 ID=Msa0433600-mRNA-1:cds;Parent=Msa0433600-mRNA-1
chr3_2 three_prime_UTR 86054388 86054774 86054388 ID=Msa0433600-mRNA-1:three_prime_utr;Parent=Msa0433600-mRNA-1
Gene Sequence

>Msa0433600

ATGGTATCTAATTTCATGGAAAGGGAACGAACTCGGAAACGACCTCGTCTCGCTTGGGATGCAGCTGCAGCTCCACCTCCTTCAATTCCAAAGGTACCCAGAAATTTGGCAGTGGTTGGTGACGGTGGAATCGAAAGAAAGTATGCTTCGCCTCCAAGAAGAGACGACGATCGTGATGGCCATTATGTCTTTAATCTCGGCGAAAATCTCACTCCTAGATCAAAATGGGTGAAGGTTAGCGGTCAAGTGCTCTCTGAATACAAGTTTAAATTTTTATATGACTCTGCTTGTGTCATTCAGCATGTTGCTAGTGCTGTAGGCACCTTCGGTCGAGTTTTGGAATGTTGGGATCGTCAAACCAGAGATTATGTAGCGATCAAGGTGATTAGAAGCATCAAGAAGTATCGCGATGCAGCAATGATCGAGGTTGATGTGCTTGAACGTCTTGTGAAGAGTGATGTGGGATGCTCACGCTGTGTACAGATCCTGAATTGGTTCGATTACCGGAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGTTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATGTCTGTGGATTATTCTTGACCTCAAGCATATGCATGAACTACGCCTAATCCACACCGACCTGAAGCCAGAAAATATACTTCTTGTTTCTTCTGACTATGTAAAGCTTCCTAGTTGTAAGAGGGTTATGTCAGATGAAACACAATTTAGGTGCTTGCCTAAGTCTAGTGCGATTAAGCTGATTGATTTTGGTAGTACTGCATTTGCAAATCAGATCCATAGCTCCATTGTTTCTACAAGGCATTATAGAGCCCCTGAGGTTATCTTAGGTCTAGGGTGGTCATCTCCATGTGATTTGTGGAGTGTTGGATGCATTCTCATTGAGTTATGCACGGGAGGAGCATTGTTTCAGACTCATGAAAATTTGGAGCACCTGGCAATGATGGAGAGAGTTTTGGGACCTCTACCAGAGCATATGGTTCAAAGATCTAAGGGTACGGAAAAATATTTCAAGCGTGGATCACGACTAAGATGGCCCGAAGGAGCTGTTTCAAGGGAGAGCATAAATGCAGTGAAGAAGCTTGGTGATCTTAAGGATATTATATCACGTCATGTTGAGTCGTCAAGGTCCTCATTAACTGATTTGTTGTATGGCTTATTAACATATGAACCATCCAAACGCATTACTGCTCGCCAAGCTCTTGATCATCCCTTCTTTAGGATTCCAACTTAA
Protein sequence

>Msa0433600

MVSNFMERERTRKRPRLAWDAAAAPPPSIPKVPRNLAVVGDGGIERKYASPPRRDDDRDGHYVFNLGENLTPRSKWVKVSGQVLSEYKFKFLYDSACVIQHVASAVGTFGRVLECWDRQTRDYVAIKVIRSIKKYRDAAMIEVDVLERLVKSDVGCSRCVQILNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVACLWIILDLKHMHELRLIHTDLKPENILLVSSDYVKLPSCKRVMSDETQFRCLPKSSAIKLIDFGSTAFANQIHSSIVSTRHYRAPEVILGLGWSSPCDLWSVGCILIELCTGGALFQTHENLEHLAMMERVLGPLPEHMVQRSKGTEKYFKRGSRLRWPEGAVSRESINAVKKLGDLKDIISRHVESSRSSLTDLLYGLLTYEPSKRITARQALDHPFFRIPT*