AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1395700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1395700 MtrunA17_Chr1g0199101 98.246 57 1 0 9 65 1 57 7.48e-32 114
Msa1395700 MtrunA17_Chr1g0163001 64.286 56 16 1 9 64 1 52 1.21e-14 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAATTCATGTTCATGATTT+AGG 0.063378 tig0021959:+56034 None:intergenic
GAGATAAATTTATTAATTTA+AGG 0.118224 tig0021959:-52596 Msa1395700:three_prime_UTR
CTAAATCATGAACATGAATT+AGG 0.166407 tig0021959:-56033 Msa1395700:three_prime_UTR
CCAACTTGATGATCACTTAA+AGG 0.176750 tig0021959:+53132 None:intergenic
CTAAAAGAAGTGTAGTTTAT+TGG 0.180835 tig0021959:-52488 Msa1395700:three_prime_UTR
ATTGCTTTCATTGCCAAATA+TGG 0.188179 tig0021959:+52828 None:intergenic
TTTGCAATTGATGGGATATT+TGG 0.199708 tig0021959:+53532 None:intergenic
GCACATTCAACTCAACATTT+TGG 0.223217 tig0021959:-52649 Msa1395700:three_prime_UTR
AGCTACTTGCTTGGTGTTCC+AGG 0.228645 tig0021959:+56166 None:intergenic
GGACGTGTTAAAATAAAATA+AGG 0.252394 tig0021959:+52429 None:intergenic
TAATTCATGTTCATGATTTA+GGG 0.254768 tig0021959:+56035 None:intergenic
AACAACATCAATGTCACTTT+TGG 0.258147 tig0021959:-52940 Msa1395700:three_prime_UTR
AATGATGAAGAGTGATTTAA+AGG 0.258726 tig0021959:+53411 None:intergenic
GGAAACACATCATCCATATT+TGG 0.261465 tig0021959:-52841 Msa1395700:three_prime_UTR
GATTGCAAAATATATAATTA+TGG 0.270959 tig0021959:-56341 Msa1395700:CDS
TGCTAGTGGATGATGTAATT+TGG 0.279783 tig0021959:+53499 None:intergenic
TCTTCATCTACATCATTCTT+TGG 0.280651 tig0021959:-56310 Msa1395700:CDS
TGGAAATAGAAGTTCAAGTA+TGG 0.282481 tig0021959:-52920 Msa1395700:three_prime_UTR
CTTTCTCCTTGGCTCTTTGT+TGG 0.310223 tig0021959:+55483 None:intergenic
ATTGTAGTAATTTCTAGAAT+TGG 0.317396 tig0021959:+52453 None:intergenic
TTAAATCACTCTTCATCATT+TGG 0.318218 tig0021959:-53408 Msa1395700:three_prime_UTR
TTAAGACACCCTAACCCTTT+TGG 0.323474 tig0021959:-53600 Msa1395700:three_prime_UTR
CACGACCCTTCAAGAGCTTT+AGG 0.336517 tig0021959:-55427 Msa1395700:three_prime_UTR
AGCAATCTTAATATGAGATT+TGG 0.345761 tig0021959:-52811 Msa1395700:three_prime_UTR
AATATGTTGCAATGAAGGTT+AGG 0.360874 tig0021959:-52619 Msa1395700:three_prime_UTR
CTACTATTACCATGAGTTTG+TGG 0.369102 tig0021959:-55865 Msa1395700:three_prime_UTR
TAAATCATGAACATGAATTA+GGG 0.369861 tig0021959:-56032 Msa1395700:three_prime_UTR
GATGACAACAACGATCTTCA+TGG 0.372227 tig0021959:-52886 Msa1395700:three_prime_UTR
AACCATAAGGTTGAAAAGAT+TGG 0.377417 tig0021959:+53218 None:intergenic
TTTGTTGCCATTAGAGTCTT+GGG 0.377742 tig0021959:+55607 None:intergenic
CAACTTGATGATCACTTAAA+GGG 0.378987 tig0021959:+53133 None:intergenic
GTAGTAGTTGATTGAGGATG+AGG 0.387074 tig0021959:+56247 None:intergenic
ACAAACCATCACATTAGTTT+AGG 0.387648 tig0021959:-53555 Msa1395700:three_prime_UTR
ATGATCATAAATCAGCTGAT+AGG 0.388164 tig0021959:-52984 Msa1395700:three_prime_UTR
ATTACTACCTTTGTTATTGT+TGG 0.391654 tig0021959:+53008 None:intergenic
TGAGTACTCCCAAAAGGGTT+AGG 0.396876 tig0021959:+53591 None:intergenic
ATTTGTTGCCATTAGAGTCT+TGG 0.406931 tig0021959:+55606 None:intergenic
TTTGTATTGCCTTGAAGATC+AGG 0.407490 tig0021959:+53261 None:intergenic
AGTGCTATCACTTCTGCATC+TGG 0.408067 tig0021959:+55634 None:intergenic
TTGATAAACTCTATTGCAAA+TGG 0.417216 tig0021959:-52862 Msa1395700:three_prime_UTR
GTGACAGTTTCATCACTCAT+AGG 0.424200 tig0021959:-53656 Msa1395700:three_prime_UTR
TTTGACCATGTTGCATTGAA+TGG 0.424923 tig0021959:+53103 None:intergenic
AATATGCTGTTCAATCTGAT+TGG 0.427517 tig0021959:-55327 Msa1395700:three_prime_UTR
ATGCATCTTCCTGATCTTCA+AGG 0.433107 tig0021959:-53270 Msa1395700:three_prime_UTR
GCTCAAATATGTTGCAATGA+AGG 0.444416 tig0021959:-52624 Msa1395700:three_prime_UTR
TTGAGATTGTTGTTCTTCAA+AGG 0.461712 tig0021959:+53329 None:intergenic
CACAAATAAACCTTTCTCCT+TGG 0.464750 tig0021959:+55472 None:intergenic
TTGTTCCTTGGTTACTACTC+AGG 0.465952 tig0021959:+53178 None:intergenic
TATGTGAGGTTTGCAACAAA+GGG 0.467995 tig0021959:-55576 Msa1395700:three_prime_UTR
ACTATCTCCCAAGACTCTAA+TGG 0.473692 tig0021959:-55614 Msa1395700:three_prime_UTR
TGATGGACGCATGTGGGCTC+AGG 0.479979 tig0021959:+55448 None:intergenic
TGTAGTTTATTGGTAAAATG+AGG 0.480030 tig0021959:-52478 Msa1395700:three_prime_UTR
AAATAATTAAGCTACTTGCT+TGG 0.481982 tig0021959:+56157 None:intergenic
AGCTATATAAGAACTATGAT+TGG 0.485654 tig0021959:-55987 Msa1395700:three_prime_UTR
GAAGAGGACACAATCTTCCT+TGG 0.488329 tig0021959:-55522 Msa1395700:three_prime_UTR
AATTGATGAGTACTCCCAAA+AGG 0.490054 tig0021959:+53585 None:intergenic
CCTTTAAGTGATCATCAAGT+TGG 0.496965 tig0021959:-53132 Msa1395700:three_prime_UTR
CAACAAAGAGCCAAGGAGAA+AGG 0.497525 tig0021959:-55482 Msa1395700:three_prime_UTR
TAAACTAATGTGATGGTTTG+TGG 0.499948 tig0021959:+53557 None:intergenic
TGATCATAAATCAGCTGATA+GGG 0.500020 tig0021959:-52983 Msa1395700:three_prime_UTR
ATTAAGTGTTGTTCAAACTT+TGG 0.503007 tig0021959:+53444 None:intergenic
TGAATTGATCATGAACCATA+AGG 0.503794 tig0021959:+53205 None:intergenic
ATATGTTGCAATGAAGGTTA+GGG 0.507680 tig0021959:-52618 Msa1395700:three_prime_UTR
AATCTTAATATGAGATTTGG+TGG 0.509729 tig0021959:-52808 Msa1395700:three_prime_UTR
CAAAATGTTGTTATTGCTAG+TGG 0.510794 tig0021959:+53485 None:intergenic
GAGTACTCCCAAAAGGGTTA+GGG 0.513767 tig0021959:+53592 None:intergenic
TTGAAGAATGGTGATGAAGA+TGG 0.514253 tig0021959:+53375 None:intergenic
CAAGAGCAAGAGCAAGGAAA+GGG 0.515248 tig0021959:+52408 None:intergenic
ATATGTGAGGTTTGCAACAA+AGG 0.517578 tig0021959:-55577 Msa1395700:three_prime_UTR
GACGTGTTAAAATAAAATAA+GGG 0.519515 tig0021959:+52430 None:intergenic
CAGTTCCTCAAAAGAAAAGA+AGG 0.521220 tig0021959:-56195 Msa1395700:CDS
TAATGTAAAGTGTTGTTCCT+TGG 0.521540 tig0021959:+53166 None:intergenic
TTTGCAACAAAGGGTTTCAA+AGG 0.521693 tig0021959:-55567 Msa1395700:three_prime_UTR
TTGCAACAAAGGGTTTCAAA+GGG 0.525797 tig0021959:-55566 Msa1395700:three_prime_UTR
ATTGATGAGTACTCCCAAAA+GGG 0.530292 tig0021959:+53586 None:intergenic
GCAGAAGTAGTAGTTGATTG+AGG 0.531988 tig0021959:+56241 None:intergenic
ATTGTGGCACCCTCTTCTCT+AGG 0.536248 tig0021959:-55261 Msa1395700:intron
ATATCACTCATATTGAAGAA+TGG 0.537313 tig0021959:+53363 None:intergenic
AGATCTCCTAAAGCTCTTGA+AGG 0.547138 tig0021959:+55421 None:intergenic
ACTTTGGTGGTGTTGATCCA+AGG 0.547369 tig0021959:+53460 None:intergenic
GTAAGCATGGTGAGAAGAAG+TGG 0.548240 tig0021959:-55372 Msa1395700:three_prime_UTR
AAAAGTCCAACAAAGAGCCA+AGG 0.555795 tig0021959:-55489 Msa1395700:three_prime_UTR
AATCTTCAACTTCATAGAAG+AGG 0.557392 tig0021959:-55538 Msa1395700:three_prime_UTR
AACAAATAGATTTATATGTG+AGG 0.560724 tig0021959:-55590 Msa1395700:three_prime_UTR
TTTGGCCTAAACTAATGTGA+TGG 0.560847 tig0021959:+53550 None:intergenic
AAGCATTACTCTCGTAAGCA+TGG 0.570554 tig0021959:-55385 Msa1395700:three_prime_UTR
ATGTTTGTTACCTAGAGAAG+AGG 0.572256 tig0021959:+55251 None:intergenic
AAGCTCTTGAAGGGTCGTGA+TGG 0.580721 tig0021959:+55431 None:intergenic
TTCTTAAACAAACAACTACA+TGG 0.582618 tig0021959:-53297 Msa1395700:three_prime_UTR
TGACAGTTTCATCACTCATA+GGG 0.582640 tig0021959:-53655 Msa1395700:three_prime_UTR
TGTTTGTTACCTAGAGAAGA+GGG 0.585590 tig0021959:+55252 None:intergenic
AGAGAATATAGATGTGATTG+TGG 0.589973 tig0021959:-55277 Msa1395700:three_prime_UTR
AGAGCTTTAGGAGATCTCAC+TGG 0.591272 tig0021959:-55415 Msa1395700:three_prime_UTR
AAGTGTTGTTCAAACTTTGG+TGG 0.596159 tig0021959:+53447 None:intergenic
AAGAAAAGAAGGAATCAACC+TGG 0.619630 tig0021959:-56184 Msa1395700:CDS
ATGGTCAGAAACATGAGTGG+TGG 0.622609 tig0021959:-52745 Msa1395700:three_prime_UTR
TTTGTCCATTCAATGCAACA+TGG 0.623181 tig0021959:-53108 Msa1395700:three_prime_UTR
AAAGCACATTCTAAGACTTG+TGG 0.628477 tig0021959:-55304 Msa1395700:three_prime_UTR
AGGGTCGTGATGGACGCATG+TGG 0.629562 tig0021959:+55441 None:intergenic
GATCTCCTAAAGCTCTTGAA+GGG 0.629745 tig0021959:+55422 None:intergenic
TGCAAAATATATAATTATGG+CGG 0.632865 tig0021959:-56338 Msa1395700:CDS
GGGTCGTGATGGACGCATGT+GGG 0.641981 tig0021959:+55442 None:intergenic
TGACATGATGAATACTAGCA+TGG 0.643758 tig0021959:-52698 Msa1395700:three_prime_UTR
AATTCTACCAACAATAACAA+AGG 0.649478 tig0021959:-53015 Msa1395700:three_prime_UTR
GATGAAGAGTGATTTAAAGG+TGG 0.652236 tig0021959:+53414 None:intergenic
AACAACCTGAGTAGTAACCA+AGG 0.667707 tig0021959:-53183 Msa1395700:three_prime_UTR
AATGCAGTGGCAGACATGTG+AGG 0.674772 tig0021959:+53069 None:intergenic
GAAGAACAACAATCTCAACA+AGG 0.728667 tig0021959:-53324 Msa1395700:three_prime_UTR
GGAATGGTCAGAAACATGAG+TGG 0.767875 tig0021959:-52748 Msa1395700:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATAATATTTTGTTGTTT+TGG - tig0021959:53535-53554 Msa1395700:three_prime_UTR 10.0%
!! ATTAAAATGAAAAAAAAAGA+AGG + tig0021959:55246-55265 None:intergenic 10.0%
!! GAGATAAATTTATTAATTTA+AGG - tig0021959:56617-56636 Msa1395700:intron 10.0%
!!! AAATATGTTTGATTTTTTTG+TGG + tig0021959:52679-52698 None:intergenic 15.0%
!!! TAGCTTCTTTTAATTTTTTT+TGG - tig0021959:52713-52732 Msa1395700:three_prime_UTR 15.0%
!! GATTGCAAAATATATAATTA+TGG - tig0021959:52872-52891 Msa1395700:three_prime_UTR 15.0%
!! AAAAACAAATTTATTGAGAA+GGG + tig0021959:53120-53139 None:intergenic 15.0%
!! AAGTAGCATATATTATATAT+AGG + tig0021959:54057-54076 None:intergenic 15.0%
!! ATATTCATTACACAAAAATA+TGG - tig0021959:55334-55353 Msa1395700:three_prime_UTR 15.0%
!! TATTCATTACACAAAAATAT+GGG - tig0021959:55335-55354 Msa1395700:three_prime_UTR 15.0%
!!! AAACTCATTTTTAGTAAAAA+TGG - tig0021959:55449-55468 Msa1395700:three_prime_UTR 15.0%
!!! TATCATTGACAATTTTTTTT+GGG + tig0021959:55496-55515 None:intergenic 15.0%
!!! ATATCATTGACAATTTTTTT+TGG + tig0021959:55497-55516 None:intergenic 15.0%
!!! TAATTCTTTGTGATTAATTT+TGG - tig0021959:55527-55546 Msa1395700:three_prime_UTR 15.0%
!!! AAATTAACTTTAGATTTTCT+TGG - tig0021959:56435-56454 Msa1395700:intron 15.0%
!! ATTTGAATTCTTCTTCTAAA+AGG + tig0021959:52819-52838 None:intergenic 20.0%
!! TGCAAAATATATAATTATGG+CGG - tig0021959:52875-52894 Msa1395700:three_prime_UTR 20.0%
!! CAAAAACAAATTTATTGAGA+AGG + tig0021959:53121-53140 None:intergenic 20.0%
!! TAATTCATGTTCATGATTTA+GGG + tig0021959:53181-53200 None:intergenic 20.0%
!! TAAATCATGAACATGAATTA+GGG - tig0021959:53181-53200 Msa1395700:three_prime_UTR 20.0%
!! AAATAAAAAAACTAAGTCTC+AGG + tig0021959:53290-53309 None:intergenic 20.0%
!! AACAAATAGATTTATATGTG+AGG - tig0021959:53623-53642 Msa1395700:three_prime_UTR 20.0%
!! TAGCATATATTATATATAGG+TGG + tig0021959:54054-54073 None:intergenic 20.0%
!!! ATAACAATTTGAAGTTTTGT+AGG - tig0021959:54252-54271 Msa1395700:intron 20.0%
!!! TTAAAACAATAACTTTTGGT+TGG + tig0021959:54292-54311 None:intergenic 20.0%
!!! ATGGTTAAAACAATAACTTT+TGG + tig0021959:54296-54315 None:intergenic 20.0%
!! AAAAAAGAGAACGATATATA+AGG + tig0021959:54324-54343 None:intergenic 20.0%
!! CTCTTTAAACTTATTTACTA+AGG - tig0021959:54385-54404 Msa1395700:intron 20.0%
!!! GACCTTTTTCATATAATAAA+AGG - tig0021959:54410-54429 Msa1395700:intron 20.0%
!!! CACCTTTTATTATATGAAAA+AGG + tig0021959:54415-54434 None:intergenic 20.0%
!! ACAAAATATGAAATGTTTGA+AGG - tig0021959:54654-54673 Msa1395700:intron 20.0%
!!! TGAAGGAAAAAAATCAATTT+TGG - tig0021959:54671-54690 Msa1395700:intron 20.0%
!!! AAAAAATCAATTTTGGTTCT+AGG - tig0021959:54678-54697 Msa1395700:intron 20.0%
!!! AAAAATCAATTTTGGTTCTA+GGG - tig0021959:54679-54698 Msa1395700:intron 20.0%
!! GGTAATTAAATTGAAGAATA+GGG + tig0021959:54867-54886 None:intergenic 20.0%
!! TGGTAATTAAATTGAAGAAT+AGG + tig0021959:54868-54887 None:intergenic 20.0%
!! AGAAAATTCTCTTCATTAAT+TGG - tig0021959:54890-54909 Msa1395700:intron 20.0%
!! ATACTCAAAAACTTCAATAT+GGG + tig0021959:55032-55051 None:intergenic 20.0%
!! AATACTCAAAAACTTCAATA+TGG + tig0021959:55033-55052 None:intergenic 20.0%
!!! AAGTTTGATTTAGAAATTCT+TGG - tig0021959:55115-55134 Msa1395700:intron 20.0%
!!! TCATTTTAATTTGTTACAAG+TGG - tig0021959:55256-55275 Msa1395700:intron 20.0%
!! ATTATAATATGAACTTCCAA+AGG - tig0021959:55358-55377 Msa1395700:three_prime_UTR 20.0%
!!! TCATTTTTAGTAAAAATGGT+AGG - tig0021959:55453-55472 Msa1395700:three_prime_UTR 20.0%
!!! CATTTTTAGTAAAAATGGTA+GGG - tig0021959:55454-55473 Msa1395700:three_prime_UTR 20.0%
!!! ATTTTTAGTAAAAATGGTAG+GGG - tig0021959:55455-55474 Msa1395700:three_prime_UTR 20.0%
!!! ATTGTAGTAATTTCTAGAAT+TGG + tig0021959:56763-56782 None:intergenic 20.0%
!! GACGTGTTAAAATAAAATAA+GGG + tig0021959:56786-56805 None:intergenic 20.0%
! TGTTATATTCCTCAATCATT+TGG + tig0021959:52472-52491 None:intergenic 25.0%
! ATTAAAAGAAGCTAGAAAGA+AGG + tig0021959:52707-52726 None:intergenic 25.0%
! AAATAATTAAGCTACTTGCT+TGG + tig0021959:53059-53078 None:intergenic 25.0%
! CTAATTCATGTTCATGATTT+AGG + tig0021959:53182-53201 None:intergenic 25.0%
! CTAAATCATGAACATGAATT+AGG - tig0021959:53180-53199 Msa1395700:three_prime_UTR 25.0%
! AGCTATATAAGAACTATGAT+TGG - tig0021959:53226-53245 Msa1395700:three_prime_UTR 25.0%
!! ATTAAAGTAACCCTAACTTT+TGG + tig0021959:54083-54102 None:intergenic 25.0%
!! TTAGGGTTACTTTAATTGTT+TGG - tig0021959:54087-54106 Msa1395700:intron 25.0%
! CGTGAATGTTAATAGATTAT+GGG + tig0021959:54712-54731 None:intergenic 25.0%
! ACGTGAATGTTAATAGATTA+TGG + tig0021959:54713-54732 None:intergenic 25.0%
! AACTTTGTTCTCATATGAAT+TGG - tig0021959:54751-54770 Msa1395700:intron 25.0%
!! TAATGAAGAGAATTTTCTGT+TGG + tig0021959:54888-54907 None:intergenic 25.0%
! ATATATAGTCATGTTTGTCA+TGG - tig0021959:54922-54941 Msa1395700:intron 25.0%
!! TAGAATATAGACAAGTATTG+AGG - tig0021959:54983-55002 Msa1395700:intron 25.0%
! TACTCAAAAACTTCAATATG+GGG + tig0021959:55031-55050 None:intergenic 25.0%
! TAAATCAAACTTCCAATTTG+AGG + tig0021959:55107-55126 None:intergenic 25.0%
!!! TCTTGGTTTGTTTCATATTT+TGG - tig0021959:55132-55151 Msa1395700:intron 25.0%
! TAAACTACAATAGAAGTAGA+GGG + tig0021959:55172-55191 None:intergenic 25.0%
!! AGAAGGTTAATTGATTTAAG+TGG + tig0021959:55229-55248 None:intergenic 25.0%
!!! ATTGACAATTTTTTTTGGGT+GGG + tig0021959:55492-55511 None:intergenic 25.0%
!! ATTAAGTGTTGTTCAAACTT+TGG + tig0021959:55772-55791 None:intergenic 25.0%
! AATGATGAAGAGTGATTTAA+AGG + tig0021959:55805-55824 None:intergenic 25.0%
! TTAAATCACTCTTCATCATT+TGG - tig0021959:55805-55824 Msa1395700:three_prime_UTR 25.0%
! ATATCACTCATATTGAAGAA+TGG + tig0021959:55853-55872 None:intergenic 25.0%
! TTCTTAAACAAACAACTACA+TGG - tig0021959:55916-55935 Msa1395700:three_prime_UTR 25.0%
! AATTCTACCAACAATAACAA+AGG - tig0021959:56198-56217 Msa1395700:CDS 25.0%
!!! ATTACTACCTTTGTTATTGT+TGG + tig0021959:56208-56227 None:intergenic 25.0%
! TTGATAAACTCTATTGCAAA+TGG - tig0021959:56351-56370 Msa1395700:intron 25.0%
! AGCAATCTTAATATGAGATT+TGG - tig0021959:56402-56421 Msa1395700:intron 25.0%
! AATCTTAATATGAGATTTGG+TGG - tig0021959:56405-56424 Msa1395700:intron 25.0%
!! CAATAAACTACACTTCTTTT+AGG + tig0021959:56727-56746 None:intergenic 25.0%
!! CTAAAAGAAGTGTAGTTTAT+TGG - tig0021959:56725-56744 Msa1395700:intron 25.0%
! TGTAGTTTATTGGTAAAATG+AGG - tig0021959:56735-56754 Msa1395700:intron 25.0%
! GGACGTGTTAAAATAAAATA+AGG + tig0021959:56787-56806 None:intergenic 25.0%
TTGAGGAATATAACAAGAGA+AGG - tig0021959:52477-52496 Msa1395700:three_prime_UTR 30.0%
ATACCTAGCTATTTATCTTC+TGG + tig0021959:52534-52553 None:intergenic 30.0%
TCTTCATCTACATCATTCTT+TGG - tig0021959:52903-52922 Msa1395700:three_prime_UTR 30.0%
! TGATTCCTTCTTTTCTTTTG+AGG + tig0021959:53026-53045 None:intergenic 30.0%
!! TTTTAAAAGCCACAAACTCA+TGG + tig0021959:53360-53379 None:intergenic 30.0%
AATCTTCAACTTCATAGAAG+AGG - tig0021959:53675-53694 Msa1395700:intron 30.0%
AATATGCTGTTCAATCTGAT+TGG - tig0021959:53886-53905 Msa1395700:intron 30.0%
AGAGAATATAGATGTGATTG+TGG - tig0021959:53936-53955 Msa1395700:intron 30.0%
AACGATATATAAGGAGTCTA+TGG + tig0021959:54315-54334 None:intergenic 30.0%
AATTAGAGCTGAAAATGAAG+AGG + tig0021959:54349-54368 None:intergenic 30.0%
!!! GCTCTTGTTCACTTTTTTTT+GGG + tig0021959:54533-54552 None:intergenic 30.0%
!!! AGCTCTTGTTCACTTTTTTT+TGG + tig0021959:54534-54553 None:intergenic 30.0%
AACACAAACTAACAGAGAAA+GGG + tig0021959:54561-54580 None:intergenic 30.0%
AAACACAAACTAACAGAGAA+AGG + tig0021959:54562-54581 None:intergenic 30.0%
!! TTTCTCTGTTAGTTTGTGTT+TGG - tig0021959:54561-54580 Msa1395700:intron 30.0%
!! TTCTCTGTTAGTTTGTGTTT+GGG - tig0021959:54562-54581 Msa1395700:intron 30.0%
! TAGTGAAGGTGTATATTGTA+TGG - tig0021959:54588-54607 Msa1395700:intron 30.0%
TGTTCTCATATGAATTGGAA+TGG - tig0021959:54756-54775 Msa1395700:intron 30.0%
TGTGATATAACGAATTCTCT+TGG - tig0021959:54960-54979 Msa1395700:intron 30.0%
ATCAAAGAAAGACCTCAAAT+TGG - tig0021959:55092-55111 Msa1395700:intron 30.0%
!!! ATATTTTGGCATAATCCCAT+GGG - tig0021959:55146-55165 Msa1395700:intron 30.0%
GTAAACTACAATAGAAGTAG+AGG + tig0021959:55173-55192 None:intergenic 30.0%
ATTAAACCCACCAAATACAA+AGG + tig0021959:55285-55304 None:intergenic 30.0%
AAAAGAGTTATGTTCACCTT+TGG + tig0021959:55377-55396 None:intergenic 30.0%
!!! AGGTGAACATAACTCTTTTT+TGG - tig0021959:55378-55397 Msa1395700:three_prime_UTR 30.0%
!!! CATTGACAATTTTTTTTGGG+TGG + tig0021959:55493-55512 None:intergenic 30.0%
!! TTTGTGATTAATTTTGGTGC+AGG - tig0021959:55533-55552 Msa1395700:three_prime_UTR 30.0%
TAAACTAATGTGATGGTTTG+TGG + tig0021959:55659-55678 None:intergenic 30.0%
! ACAAACCATCACATTAGTTT+AGG - tig0021959:55658-55677 Msa1395700:three_prime_UTR 30.0%
TTTGCAATTGATGGGATATT+TGG + tig0021959:55684-55703 None:intergenic 30.0%
! CTGATGATTTTGCAATTGAT+GGG + tig0021959:55692-55711 None:intergenic 30.0%
! TCTGATGATTTTGCAATTGA+TGG + tig0021959:55693-55712 None:intergenic 30.0%
! CAAAATGTTGTTATTGCTAG+TGG + tig0021959:55731-55750 None:intergenic 30.0%
! TTGAGATTGTTGTTCTTCAA+AGG + tig0021959:55887-55906 None:intergenic 30.0%
! TTCCAATCTTTTCAACCTTA+TGG - tig0021959:55993-56012 Msa1395700:three_prime_UTR 30.0%
AACCATAAGGTTGAAAAGAT+TGG + tig0021959:55998-56017 None:intergenic 30.0%
TGAATTGATCATGAACCATA+AGG + tig0021959:56011-56030 None:intergenic 30.0%
!! TAATGTAAAGTGTTGTTCCT+TGG + tig0021959:56050-56069 None:intergenic 30.0%
! CAACTTGATGATCACTTAAA+GGG + tig0021959:56083-56102 None:intergenic 30.0%
CTTCAAAAAGCTTCTCAAAT+TGG - tig0021959:56168-56187 Msa1395700:CDS 30.0%
ATGATCATAAATCAGCTGAT+AGG - tig0021959:56229-56248 Msa1395700:CDS 30.0%
TGATCATAAATCAGCTGATA+GGG - tig0021959:56230-56249 Msa1395700:CDS 30.0%
!!! AACAACATCAATGTCACTTT+TGG - tig0021959:56273-56292 Msa1395700:CDS 30.0%
TGGAAATAGAAGTTCAAGTA+TGG - tig0021959:56293-56312 Msa1395700:CDS 30.0%
ATTGCTTTCATTGCCAAATA+TGG + tig0021959:56388-56407 None:intergenic 30.0%
!! ACTTTAGATTTTCTTGGTGT+TGG - tig0021959:56441-56460 Msa1395700:intron 30.0%
AATATGTTGCAATGAAGGTT+AGG - tig0021959:56594-56613 Msa1395700:intron 30.0%
ATATGTTGCAATGAAGGTTA+GGG - tig0021959:56595-56614 Msa1395700:intron 30.0%
CATATGACACCAAATGATTG+AGG - tig0021959:52460-52479 Msa1395700:three_prime_UTR 35.0%
TAGCCAGAAGATAAATAGCT+AGG - tig0021959:52528-52547 Msa1395700:three_prime_UTR 35.0%
! TATCCTTTTTCCATGAGACA+AGG - tig0021959:52773-52792 Msa1395700:three_prime_UTR 35.0%
TTTCCTTGTCTCATGGAAAA+AGG + tig0021959:52779-52798 None:intergenic 35.0%
!! TCTTTTCTTTTGAGGAACTG+TGG + tig0021959:53018-53037 None:intergenic 35.0%
CAGTTCCTCAAAAGAAAAGA+AGG - tig0021959:53018-53037 Msa1395700:three_prime_UTR 35.0%
AAGAAAAGAAGGAATCAACC+TGG - tig0021959:53029-53048 Msa1395700:three_prime_UTR 35.0%
CTACTATTACCATGAGTTTG+TGG - tig0021959:53348-53367 Msa1395700:three_prime_UTR 35.0%
TTTGTTGCCATTAGAGTCTT+GGG + tig0021959:53609-53628 None:intergenic 35.0%
! ATTTGTTGCCATTAGAGTCT+TGG + tig0021959:53610-53629 None:intergenic 35.0%
ATATGTGAGGTTTGCAACAA+AGG - tig0021959:53636-53655 Msa1395700:three_prime_UTR 35.0%
TATGTGAGGTTTGCAACAAA+GGG - tig0021959:53637-53656 Msa1395700:three_prime_UTR 35.0%
TTTGCAACAAAGGGTTTCAA+AGG - tig0021959:53646-53665 Msa1395700:three_prime_UTR 35.0%
TTGCAACAAAGGGTTTCAAA+GGG - tig0021959:53647-53666 Msa1395700:three_prime_UTR 35.0%
CACAAATAAACCTTTCTCCT+TGG + tig0021959:53744-53763 None:intergenic 35.0%
!! AAAGCACATTCTAAGACTTG+TGG - tig0021959:53909-53928 Msa1395700:intron 35.0%
! TGTTTGTTACCTAGAGAAGA+GGG + tig0021959:53964-53983 None:intergenic 35.0%
! ATGTTTGTTACCTAGAGAAG+AGG + tig0021959:53965-53984 None:intergenic 35.0%
!!! TGCTACTTTTGCCAAAAGTT+AGG - tig0021959:54069-54088 Msa1395700:intron 35.0%
!!! GCTACTTTTGCCAAAAGTTA+GGG - tig0021959:54070-54089 Msa1395700:intron 35.0%
TGACCATTTCTCTTGCAAAT+CGG + tig0021959:54233-54252 None:intergenic 35.0%
! TTCCATGTTCTTTTCAGCAA+TGG - tig0021959:54840-54859 Msa1395700:intron 35.0%
! TCCATGTTCTTTTCAGCAAT+GGG - tig0021959:54841-54860 Msa1395700:intron 35.0%
GTTGCTTGCATTTATTGAGT+AGG - tig0021959:55005-55024 Msa1395700:intron 35.0%
!!! CATATTTTGGCATAATCCCA+TGG - tig0021959:55145-55164 Msa1395700:intron 35.0%
TGACAGTTTCATCACTCATA+GGG - tig0021959:55558-55577 Msa1395700:three_prime_UTR 35.0%
ATTGATGAGTACTCCCAAAA+GGG + tig0021959:55630-55649 None:intergenic 35.0%
AATTGATGAGTACTCCCAAA+AGG + tig0021959:55631-55650 None:intergenic 35.0%
TTTGGCCTAAACTAATGTGA+TGG + tig0021959:55666-55685 None:intergenic 35.0%
! TGCTAGTGGATGATGTAATT+TGG + tig0021959:55717-55736 None:intergenic 35.0%
! AATAACAACATTTTGCGCCT+TGG - tig0021959:55736-55755 Msa1395700:three_prime_UTR 35.0%
! AAGTGTTGTTCAAACTTTGG+TGG + tig0021959:55769-55788 None:intergenic 35.0%
GATGAAGAGTGATTTAAAGG+TGG + tig0021959:55802-55821 None:intergenic 35.0%
! TTGAAGAATGGTGATGAAGA+TGG + tig0021959:55841-55860 None:intergenic 35.0%
GAAGAACAACAATCTCAACA+AGG - tig0021959:55889-55908 Msa1395700:three_prime_UTR 35.0%
TTTGTATTGCCTTGAAGATC+AGG + tig0021959:55955-55974 None:intergenic 35.0%
! CCAACTTGATGATCACTTAA+AGG + tig0021959:56084-56103 None:intergenic 35.0%
CCTTTAAGTGATCATCAAGT+TGG - tig0021959:56081-56100 Msa1395700:three_prime_UTR 35.0%
TTTGTCCATTCAATGCAACA+TGG - tig0021959:56105-56124 Msa1395700:three_prime_UTR 35.0%
TTTGACCATGTTGCATTGAA+TGG + tig0021959:56113-56132 None:intergenic 35.0%
GGAAACACATCATCCATATT+TGG - tig0021959:56372-56391 Msa1395700:intron 35.0%
!!! TTAGATTTTCTTGGTGTTGG+AGG - tig0021959:56444-56463 Msa1395700:intron 35.0%
TGACATGATGAATACTAGCA+TGG - tig0021959:56515-56534 Msa1395700:intron 35.0%
!!! GAGTTGAATGTGCTGATTTT+AGG + tig0021959:56557-56576 None:intergenic 35.0%
! GCACATTCAACTCAACATTT+TGG - tig0021959:56564-56583 Msa1395700:intron 35.0%
GCTCAAATATGTTGCAATGA+AGG - tig0021959:56589-56608 Msa1395700:intron 35.0%
ACAAGAGTAATGAAGAGACG+AGG + tig0021959:52568-52587 None:intergenic 40.0%
TTGCAAGAGGAAAGGATCTA+AGG + tig0021959:52593-52612 None:intergenic 40.0%
CAAAAAGGTTGCAAGAGGAA+AGG + tig0021959:52601-52620 None:intergenic 40.0%
CTCACAGATTGAGAGCAAAA+AGG + tig0021959:52616-52635 None:intergenic 40.0%
GAACATGTTTCCTTGTCTCA+TGG + tig0021959:52786-52805 None:intergenic 40.0%
GTAGTAGTTGATTGAGGATG+AGG + tig0021959:52969-52988 None:intergenic 40.0%
GCAGAAGTAGTAGTTGATTG+AGG + tig0021959:52975-52994 None:intergenic 40.0%
!! TTTTGAGGAACTGTGGTTGA+AGG + tig0021959:53011-53030 None:intergenic 40.0%
ACTATCTCCCAAGACTCTAA+TGG - tig0021959:53599-53618 Msa1395700:three_prime_UTR 40.0%
!! GACTTTTGCTTTAGCTTCCA+AGG + tig0021959:53711-53730 None:intergenic 40.0%
AAAAGTCCAACAAAGAGCCA+AGG - tig0021959:53724-53743 Msa1395700:intron 40.0%
GATCTCCTAAAGCTCTTGAA+GGG + tig0021959:53794-53813 None:intergenic 40.0%
AGATCTCCTAAAGCTCTTGA+AGG + tig0021959:53795-53814 None:intergenic 40.0%
AAGCATTACTCTCGTAAGCA+TGG - tig0021959:53828-53847 Msa1395700:intron 40.0%
! CATCCGATTTGCAAGAGAAA+TGG - tig0021959:54227-54246 Msa1395700:intron 40.0%
TTGTGTTTGGGTGTTAGTGA+AGG - tig0021959:54574-54593 Msa1395700:intron 40.0%
ATGAATTGGAATGGAGATGC+TGG - tig0021959:54765-54784 Msa1395700:intron 40.0%
TGAATTGGAATGGAGATGCT+GGG - tig0021959:54766-54785 Msa1395700:intron 40.0%
CAAGTGGCTACCTTTGTATT+TGG - tig0021959:55272-55291 Msa1395700:three_prime_UTR 40.0%
TGGCTACCTTTGTATTTGGT+GGG - tig0021959:55276-55295 Msa1395700:three_prime_UTR 40.0%
GTGACAGTTTCATCACTCAT+AGG - tig0021959:55557-55576 Msa1395700:three_prime_UTR 40.0%
! TTAAGACACCCTAACCCTTT+TGG - tig0021959:55613-55632 Msa1395700:three_prime_UTR 40.0%
! TAAGACACCCTAACCCTTTT+GGG - tig0021959:55614-55633 Msa1395700:three_prime_UTR 40.0%
ATGCATCTTCCTGATCTTCA+AGG - tig0021959:55943-55962 Msa1395700:three_prime_UTR 40.0%
AACAACCTGAGTAGTAACCA+AGG - tig0021959:56030-56049 Msa1395700:three_prime_UTR 40.0%
TTGTTCCTTGGTTACTACTC+AGG + tig0021959:56038-56057 None:intergenic 40.0%
!!! AGCTTTTTGAAGCAATGCAG+TGG + tig0021959:56160-56179 None:intergenic 40.0%
GATGACAACAACGATCTTCA+TGG - tig0021959:56327-56346 Msa1395700:CDS 40.0%
!!! TTTTCTTGGTGTTGGAGGAA+TGG - tig0021959:56449-56468 Msa1395700:intron 40.0%
GAGAGCAAAAAGGTTGCAAG+AGG + tig0021959:52606-52625 None:intergenic 45.0%
AGTGCTATCACTTCTGCATC+TGG + tig0021959:53582-53601 None:intergenic 45.0%
GAAGAGGACACAATCTTCCT+TGG - tig0021959:53691-53710 Msa1395700:intron 45.0%
! CTTTCTCCTTGGCTCTTTGT+TGG + tig0021959:53733-53752 None:intergenic 45.0%
CAACAAAGAGCCAAGGAGAA+AGG - tig0021959:53731-53750 Msa1395700:intron 45.0%
!! AGAGCTTTAGGAGATCTCAC+TGG - tig0021959:53798-53817 Msa1395700:intron 45.0%
GTAAGCATGGTGAGAAGAAG+TGG - tig0021959:53841-53860 Msa1395700:intron 45.0%
AGGTGTATATTGTATGGCGC+AGG - tig0021959:54594-54613 Msa1395700:intron 45.0%
GCCCATTGCTGAAAAGAACA+TGG + tig0021959:54845-54864 None:intergenic 45.0%
AATAGAAGTAGAGGGCCCAT+GGG + tig0021959:55164-55183 None:intergenic 45.0%
GTGGCTACCTTTGTATTTGG+TGG - tig0021959:55275-55294 Msa1395700:three_prime_UTR 45.0%
GAGTACTCCCAAAAGGGTTA+GGG + tig0021959:55624-55643 None:intergenic 45.0%
TGAGTACTCCCAAAAGGGTT+AGG + tig0021959:55625-55644 None:intergenic 45.0%
!! ACTTTGGTGGTGTTGATCCA+AGG + tig0021959:55756-55775 None:intergenic 45.0%
GGAATGGTCAGAAACATGAG+TGG - tig0021959:56465-56484 Msa1395700:intron 45.0%
ATGGTCAGAAACATGAGTGG+TGG - tig0021959:56468-56487 Msa1395700:intron 45.0%
!! TATAATTTATATAATCAATT+AGG - tig0021959:55305-55324 Msa1395700:three_prime_UTR 5.0%
!! AGCTACTTGCTTGGTGTTCC+AGG + tig0021959:53050-53069 None:intergenic 50.0%
AAGCTCTTGAAGGGTCGTGA+TGG + tig0021959:53785-53804 None:intergenic 50.0%
CACGACCCTTCAAGAGCTTT+AGG - tig0021959:53786-53805 Msa1395700:intron 50.0%
ATTGTGGCACCCTCTTCTCT+AGG - tig0021959:53952-53971 Msa1395700:intron 50.0%
CAATAGAAGTAGAGGGCCCA+TGG + tig0021959:55165-55184 None:intergenic 50.0%
AATGCAGTGGCAGACATGTG+AGG + tig0021959:56147-56166 None:intergenic 50.0%
! TGATGGACGCATGTGGGCTC+AGG + tig0021959:53768-53787 None:intergenic 60.0%
!! GGGTCGTGATGGACGCATGT+GGG + tig0021959:53774-53793 None:intergenic 60.0%
!! AGGGTCGTGATGGACGCATG+TGG + tig0021959:53775-53794 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0021959 gene 52423 56812 52423 ID=Msa1395700;Name=Msa1395700
tig0021959 mRNA 52423 56812 52423 ID=Msa1395700-mRNA-1;Parent=Msa1395700;Name=Msa1395700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.5|0.66|0.66|0.5|0.33|3|2164|66
tig0021959 exon 52423 53680 52423 ID=Msa1395700-mRNA-1:exon:15016;Parent=Msa1395700-mRNA-1
tig0021959 exon 55262 56362 55262 ID=Msa1395700-mRNA-1:exon:15015;Parent=Msa1395700-mRNA-1
tig0021959 exon 56807 56812 56807 ID=Msa1395700-mRNA-1:exon:15014;Parent=Msa1395700-mRNA-1
tig0021959 CDS 56807 56812 56807 ID=Msa1395700-mRNA-1:cds;Parent=Msa1395700-mRNA-1
tig0021959 CDS 56168 56362 56168 ID=Msa1395700-mRNA-1:cds;Parent=Msa1395700-mRNA-1
tig0021959 three_prime_UTR 55262 56167 55262 ID=Msa1395700-mRNA-1:three_prime_utr;Parent=Msa1395700-mRNA-1
tig0021959 three_prime_UTR 52423 53680 52423 ID=Msa1395700-mRNA-1:three_prime_utr;Parent=Msa1395700-mRNA-1
Gene Sequence

>Msa1395700

ATGCATATTGCAAAATATATAATTATGGCGGCTGCTTCTTCATCTACATCATTCTTTGGAATCAGAGAAGAAAATCAAAGTCAAATAACACATCATCATCCTCATCCTCAATCAACTACTACTTCTGCTACTTCTTCAGCTCCTTCAACCACAGTTCCTCAAAAGAAAAGAAGGAATCAACCTGGAACACCAAGCAAGTAG

Protein sequence

>Msa1395700

MHIAKYIIMAAASSSTSFFGIREENQSQITHHHPHPQSTTTSATSSAPSTTVPQKKRRNQPGTPSK*