Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440570 | XP_003598463.1 | 100.000 | 148 | 0 | 0 | 47 | 194 | 1 | 148 | 1.10e-102 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440570 | sp|Q87SU3|RL27_VIBPA | 65.882 | 85 | 29 | 0 | 87 | 171 | 1 | 85 | 7.71e-32 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440570 | B7FGL1 | 100.000 | 148 | 0 | 0 | 47 | 194 | 1 | 148 | 5.25e-103 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0177360 | Msa0440570 | 0.806221 | 9.139974e-50 | -8.615850e-47 |
| Msa0440570 | Msa0659030 | 0.814609 | 1.411944e-51 | -8.615850e-47 |
| Msa0440570 | Msa0705000 | 0.814705 | 1.344690e-51 | -8.615850e-47 |
| Msa0440570 | Msa0705040 | 0.822517 | 2.270362e-53 | -8.615850e-47 |
| Msa0440570 | Msa1184370 | 0.802271 | 6.073748e-49 | -8.615850e-47 |
| Msa0440570 | Msa1227690 | 0.804347 | 2.256420e-49 | -8.615850e-47 |
| Msa0440570 | Msa1442850 | 0.809876 | 1.523151e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440570 | MtrunA17_Chr3g0082061 | 98.750 | 80 | 1 | 0 | 115 | 194 | 12 | 91 | 8.38e-54 | 166 |
| Msa0440570 | MtrunA17_Chr3g0084881 | 55.102 | 98 | 43 | 1 | 81 | 178 | 51 | 147 | 5.75e-26 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0440570 | AT5G15220.2 | 66.897 | 145 | 46 | 1 | 45 | 187 | 2 | 146 | 1.06e-68 | 206 |
| Msa0440570 | AT5G15220.1 | 66.897 | 145 | 46 | 1 | 45 | 187 | 2 | 146 | 1.06e-68 | 206 |
| Msa0440570 | AT2G16930.1 | 69.655 | 145 | 42 | 1 | 45 | 187 | 2 | 146 | 2.25e-67 | 203 |
| Msa0440570 | AT2G16930.3 | 69.655 | 145 | 42 | 1 | 45 | 187 | 2 | 146 | 2.25e-67 | 203 |
| Msa0440570 | AT2G16930.4 | 69.655 | 145 | 42 | 1 | 45 | 187 | 2 | 146 | 2.25e-67 | 203 |
| Msa0440570 | AT2G16930.2 | 69.655 | 145 | 42 | 1 | 45 | 187 | 2 | 146 | 2.25e-67 | 203 |
| Msa0440570 | AT5G40950.1 | 58.824 | 85 | 34 | 1 | 88 | 172 | 59 | 142 | 3.53e-24 | 94.7 |
Find 54 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACTTGGTAATACGATTA+AGG | 0.182979 | 3_3:+8054303 | Msa0440570:three_prime_UTR |
| GAACATCGAATGAATTATTT+AGG | 0.208111 | 3_3:-8054282 | None:intergenic |
| AACCTTGGAGTGAAGAAATT+TGG | 0.235052 | 3_3:+8053627 | Msa0440570:CDS |
| ACTTCAGAGGTGGAACATTT+AGG | 0.278291 | 3_3:-8054089 | None:intergenic |
| TTCTTCACTCCAAGGTTCTT+AGG | 0.288455 | 3_3:-8053621 | None:intergenic |
| CCCAGTCCAACATAGTTTCC+AGG | 0.312601 | 3_3:-8053835 | None:intergenic |
| TTTGTACTGAAATCATTTAA+AGG | 0.317749 | 3_3:+8054131 | Msa0440570:three_prime_UTR |
| TGGAGGACATGACCTTCTTT+AGG | 0.321134 | 3_3:-8053946 | None:intergenic |
| CAGATTGCGACACCAACTTT+TGG | 0.334330 | 3_3:-8054000 | None:intergenic |
| TTTAAAGGGTTGATTCTAGA+AGG | 0.338296 | 3_3:+8054146 | Msa0440570:three_prime_UTR |
| CAACTTGGTAATACGATTAA+GGG | 0.341908 | 3_3:+8054304 | Msa0440570:three_prime_UTR |
| TTCTGGAGAGGGGTTGAGTT+TGG | 0.358320 | 3_3:+8053536 | Msa0440570:CDS |
| TAATACGATTAAGGGTTCTA+TGG | 0.386981 | 3_3:+8054312 | Msa0440570:three_prime_UTR |
| ACAAATATTAACCAACTGAT+TGG | 0.388116 | 3_3:-8054223 | None:intergenic |
| TGCCTAACAATGATGTTTCC+AGG | 0.389594 | 3_3:-8053793 | None:intergenic |
| TTGTACTGAAATCATTTAAA+GGG | 0.392177 | 3_3:+8054132 | Msa0440570:three_prime_UTR |
| TGAGTTTGGTGTTCCGCCGT+TGG | 0.414630 | 3_3:+8053550 | Msa0440570:CDS |
| GATCATGCTTGAAATTGGTC+AGG | 0.446604 | 3_3:-8054024 | None:intergenic |
| CTTTCTTCCTCTTCTCTCAT+CGG | 0.449285 | 3_3:+8051311 | Msa0440570:CDS |
| TCCTGGAAACTATGTTGGAC+TGG | 0.450770 | 3_3:+8053834 | Msa0440570:CDS |
| GAGTTTGGTGTTCCGCCGTT+GGG | 0.453194 | 3_3:+8053551 | Msa0440570:CDS |
| TTCTAGAAGGAATTAGTTGT+AGG | 0.462582 | 3_3:+8054159 | Msa0440570:three_prime_UTR |
| CCTGGAAACTATGTTGGACT+GGG | 0.465232 | 3_3:+8053835 | Msa0440570:CDS |
| TTTCATCCTGGAAACTATGT+TGG | 0.470487 | 3_3:+8053829 | Msa0440570:CDS |
| AATTCATTCGATGTTCAACT+TGG | 0.473832 | 3_3:+8054289 | Msa0440570:three_prime_UTR |
| CCTGTCTACAGAAGCACTGC+TGG | 0.481639 | 3_3:+8053422 | Msa0440570:CDS |
| TACCTGGAAACATCATTGTT+AGG | 0.496756 | 3_3:+8053791 | Msa0440570:CDS |
| CACCAAATTTCTTCACTCCA+AGG | 0.497085 | 3_3:-8053629 | None:intergenic |
| GATTGAATAGTTGTATAAAG+AGG | 0.498990 | 3_3:+8054249 | Msa0440570:three_prime_UTR |
| AAGCGACGGTGACGAAAAGA+TGG | 0.502281 | 3_3:-8051291 | None:intergenic |
| CCAGCAGTGCTTCTGTAGAC+AGG | 0.535309 | 3_3:-8053422 | None:intergenic |
| CTTGGAGTGAAGAAATTTGG+TGG | 0.539058 | 3_3:+8053630 | Msa0440570:CDS |
| ATGTTATATAACCAATCAGT+TGG | 0.540348 | 3_3:+8054212 | Msa0440570:three_prime_UTR |
| TCTGCATCCGAACCAAAAGT+TGG | 0.540500 | 3_3:+8053988 | Msa0440570:CDS |
| GTTGTATAAAGAGGTCTTTG+AGG | 0.551596 | 3_3:+8054258 | Msa0440570:three_prime_UTR |
| GTGCAGAAGATTGAATATCA+AGG | 0.553923 | 3_3:+8053382 | Msa0440570:CDS |
| TTTGAACGCAACAAGCTGAC+TGG | 0.555382 | 3_3:+8053901 | Msa0440570:CDS |
| AGTGAAGAAATTTGGTGGAG+AGG | 0.575621 | 3_3:+8053635 | Msa0440570:CDS |
| ACAAGCTGACTGGTCGCAAG+TGG | 0.576184 | 3_3:+8053911 | Msa0440570:CDS |
| GAAAATCAGTTCCTCCCCGC+CGG | 0.583340 | 3_3:+8051146 | Msa0440570:CDS |
| GTGCATGTTGAACCTAAAGA+AGG | 0.607113 | 3_3:+8053934 | Msa0440570:CDS |
| TTAGCTGTTCTCCGGCGGGG+AGG | 0.617646 | 3_3:-8051157 | None:intergenic |
| GAGGTTACCGATGAGAGAAG+AGG | 0.619588 | 3_3:-8051318 | None:intergenic |
| CATCAGCAAACACAGGGTGG+AGG | 0.622529 | 3_3:-8053963 | None:intergenic |
| CAAGCTGACTGGTCGCAAGT+GGG | 0.624713 | 3_3:+8053912 | Msa0440570:CDS |
| GATTCAAAACCTAAGAACCT+TGG | 0.635814 | 3_3:+8053612 | Msa0440570:CDS |
| AGAGAAGAGGAAGAAAGCGA+CGG | 0.638442 | 3_3:-8051305 | None:intergenic |
| ATCATGCAGAGGGTAATACC+TGG | 0.640511 | 3_3:+8053775 | Msa0440570:intron |
| GCAGAAACATCAGCAAACAC+AGG | 0.646726 | 3_3:-8053970 | None:intergenic |
| AACATCATTGTTAGGCAACG+TGG | 0.650151 | 3_3:+8053799 | Msa0440570:CDS |
| CAGAAACATCAGCAAACACA+GGG | 0.651832 | 3_3:-8053969 | None:intergenic |
| AAAACAACAGACTTCAGAGG+TGG | 0.665795 | 3_3:-8054099 | None:intergenic |
| CTGGAAACTATGTTGGACTG+GGG | 0.677480 | 3_3:+8053836 | Msa0440570:CDS |
| AAACATCAGCAAACACAGGG+TGG | 0.690150 | 3_3:-8053966 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAAATAAAATAATAA+AGG | - | chr3_3:8053133-8053152 | None:intergenic | 0.0% |
| !! | CTAATCATAAAAAAAAATTA+GGG | - | chr3_3:8051511-8051530 | None:intergenic | 10.0% |
| !! | ACTAATCATAAAAAAAAATT+AGG | - | chr3_3:8051512-8051531 | None:intergenic | 10.0% |
| !!! | GTATTATTTATAAGTTTTTA+AGG | + | chr3_3:8051911-8051930 | Msa0440570:intron | 10.0% |
| !!! | AATTATTTTTGAGTAATATA+TGG | + | chr3_3:8052749-8052768 | Msa0440570:intron | 10.0% |
| !! | CTTATCTTTATTATAATTTA+TGG | + | chr3_3:8053158-8053177 | Msa0440570:intron | 10.0% |
| !! | TAGAAAAAATAATAGAAACT+TGG | + | chr3_3:8052082-8052101 | Msa0440570:intron | 15.0% |
| !!! | TATAACATTTTGACAAAAAA+AGG | - | chr3_3:8054200-8054219 | None:intergenic | 15.0% |
| !! | ATTTGATATTTGAAGAGTTA+GGG | - | chr3_3:8051446-8051465 | None:intergenic | 20.0% |
| !! | AATTTGATATTTGAAGAGTT+AGG | - | chr3_3:8051447-8051466 | None:intergenic | 20.0% |
| !!! | AAAACAGTTTTATGAAGATA+CGG | + | chr3_3:8051945-8051964 | Msa0440570:intron | 20.0% |
| !! | AATCAAATCAATTTCATTAG+AGG | + | chr3_3:8052177-8052196 | Msa0440570:intron | 20.0% |
| !!! | TAGAGTACCAAAATAAATTA+AGG | + | chr3_3:8052234-8052253 | Msa0440570:intron | 20.0% |
| !!! | ACATAAGTTTTGTTTATAGA+AGG | - | chr3_3:8052361-8052380 | None:intergenic | 20.0% |
| !!! | TTTTTTAATGTCTAAGACAT+AGG | + | chr3_3:8052446-8052465 | Msa0440570:intron | 20.0% |
| !!! | TTTTTAATGTCTAAGACATA+GGG | + | chr3_3:8052447-8052466 | Msa0440570:intron | 20.0% |
| !! | AAGTTAAAAAATGCCAATTT+CGG | - | chr3_3:8052694-8052713 | None:intergenic | 20.0% |
| !!! | ATCTAATAACATTGATTCAT+TGG | - | chr3_3:8052889-8052908 | None:intergenic | 20.0% |
| !! | TGAATCAATGTTATTAGATA+TGG | + | chr3_3:8052890-8052909 | Msa0440570:intron | 20.0% |
| !!! | AGATATGGATTTAAACTTTT+TGG | + | chr3_3:8052905-8052924 | Msa0440570:intron | 20.0% |
| !! | TTGGAAAGTTATGAAAAAAA+TGG | - | chr3_3:8053022-8053041 | None:intergenic | 20.0% |
| !! | ACAAAATAGTATAATAGTGT+TGG | - | chr3_3:8053308-8053327 | None:intergenic | 20.0% |
| !!! | ATTATACTATTTTGTGTTTC+AGG | + | chr3_3:8053313-8053332 | Msa0440570:intron | 20.0% |
| !!! | TTATACTATTTTGTGTTTCA+GGG | + | chr3_3:8053314-8053333 | Msa0440570:intron | 20.0% |
| !!! | TTCATTATTTTAGATGTTTC+TGG | + | chr3_3:8053519-8053538 | Msa0440570:intron | 20.0% |
| !!! | ATATCAGTGATCAAATTTTT+TGG | + | chr3_3:8054054-8054073 | Msa0440570:three_prime_UTR | 20.0% |
| !! | TTTGTACTGAAATCATTTAA+AGG | + | chr3_3:8054131-8054150 | Msa0440570:three_prime_UTR | 20.0% |
| !! | TTGTACTGAAATCATTTAAA+GGG | + | chr3_3:8054132-8054151 | Msa0440570:three_prime_UTR | 20.0% |
| !! | CATCTCTTTTGTGTATTAAA+AGG | + | chr3_3:8051362-8051381 | Msa0440570:intron | 25.0% |
| !! | GGTTCATTTCATCAATTTTA+TGG | + | chr3_3:8051383-8051402 | Msa0440570:intron | 25.0% |
| ! | CTATTCAGATAACTGTTATA+TGG | + | chr3_3:8051695-8051714 | Msa0440570:intron | 25.0% |
| ! | TATAGTTTCAAAATTGAACG+TGG | + | chr3_3:8051722-8051741 | Msa0440570:intron | 25.0% |
| ! | ATAGTTTCAAAATTGAACGT+GGG | + | chr3_3:8051723-8051742 | Msa0440570:intron | 25.0% |
| ! | TAAAATAAGCTAATCCAAAG+GGG | - | chr3_3:8051849-8051868 | None:intergenic | 25.0% |
| ! | CTAAAATAAGCTAATCCAAA+GGG | - | chr3_3:8051850-8051869 | None:intergenic | 25.0% |
| !! | TCTAAAATAAGCTAATCCAA+AGG | - | chr3_3:8051851-8051870 | None:intergenic | 25.0% |
| ! | TAATTTATAAGCTCTCACTA+AGG | - | chr3_3:8051975-8051994 | None:intergenic | 25.0% |
| ! | GCTTATGAAAAAATAGCTTA+TGG | - | chr3_3:8052018-8052037 | None:intergenic | 25.0% |
| ! | AAATAATAGAAACTTGGCTT+AGG | + | chr3_3:8052088-8052107 | Msa0440570:intron | 25.0% |
| !! | CTAGAAGCCTTAATTTATTT+TGG | - | chr3_3:8052244-8052263 | None:intergenic | 25.0% |
| ! | CAAAACTTATGTTATCAGAT+TGG | + | chr3_3:8052369-8052388 | Msa0440570:intron | 25.0% |
| ! | GTCTTAGACATTAAAAAATC+AGG | - | chr3_3:8052444-8052463 | None:intergenic | 25.0% |
| ! | AAAAAATAAGCCAATCCAAA+CGG | - | chr3_3:8052474-8052493 | None:intergenic | 25.0% |
| ! | ATGCAAATAAATAAGCTCTT+AGG | - | chr3_3:8052624-8052643 | None:intergenic | 25.0% |
| !!! | GAAATTGGCATTTTTTAACT+TGG | + | chr3_3:8052693-8052712 | Msa0440570:intron | 25.0% |
| ! | AACAATGTAAAATGAGTGAT+GGG | - | chr3_3:8052861-8052880 | None:intergenic | 25.0% |
| !! | TTTGGTATTTTCCATTTCTT+TGG | + | chr3_3:8052923-8052942 | Msa0440570:intron | 25.0% |
| ! | TCAATAAATTCTACAGCAAA+AGG | - | chr3_3:8053061-8053080 | None:intergenic | 25.0% |
| !! | GAATTTATTGATAGCATTCA+AGG | + | chr3_3:8053070-8053089 | Msa0440570:intron | 25.0% |
| ! | ATGATACAAATAGCCAATAT+AGG | - | chr3_3:8053462-8053481 | None:intergenic | 25.0% |
| !!! | TTATTTTTGTTATCATGCAG+AGG | + | chr3_3:8053764-8053783 | Msa0440570:intron | 25.0% |
| !!! | TATTTTTGTTATCATGCAGA+GGG | + | chr3_3:8053765-8053784 | Msa0440570:intron | 25.0% |
| !! | TTTTTGATCATGCTTGAAAT+TGG | - | chr3_3:8054032-8054051 | None:intergenic | 25.0% |
| ! | ATGTTATATAACCAATCAGT+TGG | + | chr3_3:8054212-8054231 | Msa0440570:three_prime_UTR | 25.0% |
| ! | ACAAATATTAACCAACTGAT+TGG | - | chr3_3:8054226-8054245 | None:intergenic | 25.0% |
| ! | GATTGAATAGTTGTATAAAG+AGG | + | chr3_3:8054249-8054268 | Msa0440570:three_prime_UTR | 25.0% |
| ! | GAACATCGAATGAATTATTT+AGG | - | chr3_3:8054285-8054304 | None:intergenic | 25.0% |
| !!! | CATGATAATGTAGATTTTGT+TGG | + | chr3_3:8054345-8054364 | Msa0440570:three_prime_UTR | 25.0% |
| !! | TTTTCTGGAAATAAGGAAGT+GGG | - | chr3_3:8051131-8051150 | None:intergenic | 30.0% |
| !! | ATTTTCTGGAAATAAGGAAG+TGG | - | chr3_3:8051132-8051151 | None:intergenic | 30.0% |
| !! | GAACTGATTTTCTGGAAATA+AGG | - | chr3_3:8051138-8051157 | None:intergenic | 30.0% |
| TGAAGAATGATGATAAAGAG+AGG | - | chr3_3:8051340-8051359 | None:intergenic | 30.0% | |
| !!! | GTTTTGTTACTTTTGCTGTT+TGG | + | chr3_3:8051777-8051796 | Msa0440570:intron | 30.0% |
| TTGTTAGTGTAAATGACATG+TGG | + | chr3_3:8051811-8051830 | Msa0440570:intron | 30.0% | |
| AAATGACATGTGGTAACATT+AGG | + | chr3_3:8051821-8051840 | Msa0440570:intron | 30.0% | |
| TTTCATAAGCTCAAACCAAA+TGG | + | chr3_3:8052028-8052047 | Msa0440570:intron | 30.0% | |
| TTCATAAGCTCAAACCAAAT+GGG | + | chr3_3:8052029-8052048 | Msa0440570:intron | 30.0% | |
| GACTTGTAGATTCTATAGTA+AGG | + | chr3_3:8052133-8052152 | Msa0440570:intron | 30.0% | |
| CATGGCTAAAGAATATTTCT+AGG | - | chr3_3:8052213-8052232 | None:intergenic | 30.0% | |
| CTAGAAATATTCTTTAGCCA+TGG | + | chr3_3:8052211-8052230 | Msa0440570:intron | 30.0% | |
| !!! | TTTATTTTGGTACTCTACCA+TGG | - | chr3_3:8052231-8052250 | None:intergenic | 30.0% |
| ATGTATAGTAGTAGGAGAAT+TGG | + | chr3_3:8052411-8052430 | Msa0440570:intron | 30.0% | |
| TGTATAGTAGTAGGAGAATT+GGG | + | chr3_3:8052412-8052431 | Msa0440570:intron | 30.0% | |
| AAAAATAAGCCAATCCAAAC+GGG | - | chr3_3:8052473-8052492 | None:intergenic | 30.0% | |
| TTATTTGCATAAGCTTGTCA+AGG | + | chr3_3:8052634-8052653 | Msa0440570:intron | 30.0% | |
| TATTTGCATAAGCTTGTCAA+GGG | + | chr3_3:8052635-8052654 | Msa0440570:intron | 30.0% | |
| !! | TTTAGAACTTTTGCTCTGTA+CGG | + | chr3_3:8052659-8052678 | Msa0440570:intron | 30.0% |
| TTAAAAAATGCCAATTTCGG+TGG | - | chr3_3:8052691-8052710 | None:intergenic | 30.0% | |
| ACTCAAAAATAATTGACCGA+GGG | - | chr3_3:8052743-8052762 | None:intergenic | 30.0% | |
| TACTCAAAAATAATTGACCG+AGG | - | chr3_3:8052744-8052763 | None:intergenic | 30.0% | |
| CAACAATGTAAAATGAGTGA+TGG | - | chr3_3:8052862-8052881 | None:intergenic | 30.0% | |
| ! | GTATTTTCCATTTCTTTGGA+TGG | + | chr3_3:8052927-8052946 | Msa0440570:intron | 30.0% |
| AATCATACCATCCAAAGAAA+TGG | - | chr3_3:8052937-8052956 | None:intergenic | 30.0% | |
| ATTTCTTTGGATGGTATGAT+TGG | + | chr3_3:8052936-8052955 | Msa0440570:intron | 30.0% | |
| TCAAGGTTAATGATCATGAA+TGG | + | chr3_3:8053087-8053106 | Msa0440570:intron | 30.0% | |
| ACAACATATAGAAGCAATTG+TGG | - | chr3_3:8053239-8053258 | None:intergenic | 30.0% | |
| !!! | GCAAAATTCATGCTGTTTTT+CGG | - | chr3_3:8053353-8053372 | None:intergenic | 30.0% |
| ATACCTTCATGATCCTATAT+TGG | + | chr3_3:8053446-8053465 | Msa0440570:intron | 30.0% | |
| !!! | TATTTTAGATGTTTCTGGAG+AGG | + | chr3_3:8053524-8053543 | Msa0440570:intron | 30.0% |
| !!! | ATTTTAGATGTTTCTGGAGA+GGG | + | chr3_3:8053525-8053544 | Msa0440570:intron | 30.0% |
| !!! | TACTCTTTTTGCTTTGAAAG+AGG | + | chr3_3:8053867-8053886 | Msa0440570:CDS | 30.0% |
| !!! | ACTCTTTTTGCTTTGAAAGA+GGG | + | chr3_3:8053868-8053887 | Msa0440570:CDS | 30.0% |
| ! | TTTAAAGGGTTGATTCTAGA+AGG | + | chr3_3:8054146-8054165 | Msa0440570:three_prime_UTR | 30.0% |
| ! | TTCTAGAAGGAATTAGTTGT+AGG | + | chr3_3:8054159-8054178 | Msa0440570:three_prime_UTR | 30.0% |
| AATTCATTCGATGTTCAACT+TGG | + | chr3_3:8054289-8054308 | Msa0440570:three_prime_UTR | 30.0% | |
| ! | TCAACTTGGTAATACGATTA+AGG | + | chr3_3:8054303-8054322 | Msa0440570:three_prime_UTR | 30.0% |
| ! | CAACTTGGTAATACGATTAA+GGG | + | chr3_3:8054304-8054323 | Msa0440570:three_prime_UTR | 30.0% |
| TAATACGATTAAGGGTTCTA+TGG | + | chr3_3:8054312-8054331 | Msa0440570:three_prime_UTR | 30.0% | |
| TTAGGGTTTATAGCAGAAGA+GGG | - | chr3_3:8051429-8051448 | None:intergenic | 35.0% | |
| TGTGCACAAGATGCAAATTA+GGG | - | chr3_3:8051543-8051562 | None:intergenic | 35.0% | |
| TTGTGCACAAGATGCAAATT+AGG | - | chr3_3:8051544-8051563 | None:intergenic | 35.0% | |
| TGTTTGATAAAATGCCACAG+CGG | + | chr3_3:8051568-8051587 | Msa0440570:intron | 35.0% | |
| TCATAAGCTCAAACCAAATG+GGG | + | chr3_3:8052030-8052049 | Msa0440570:intron | 35.0% | |
| TAATAGAAACTTGGCTTAGG+TGG | + | chr3_3:8052091-8052110 | Msa0440570:intron | 35.0% | |
| ATCAATTTCATTAGAGGCAG+AGG | + | chr3_3:8052183-8052202 | Msa0440570:intron | 35.0% | |
| TGTACATCAAAGACAAGCTA+AGG | - | chr3_3:8052793-8052812 | None:intergenic | 35.0% | |
| TTCATAACTTTCCAAGTCTG+AGG | + | chr3_3:8053027-8053046 | Msa0440570:intron | 35.0% | |
| GAAATACCCTGTAATGATCA+CGG | + | chr3_3:8053195-8053214 | Msa0440570:intron | 35.0% | |
| AAATACCCTGTAATGATCAC+GGG | + | chr3_3:8053196-8053215 | Msa0440570:intron | 35.0% | |
| TATAGAAGCAATTGTGGTCA+TGG | - | chr3_3:8053233-8053252 | None:intergenic | 35.0% | |
| GTGCAGAAGATTGAATATCA+AGG | + | chr3_3:8053382-8053401 | Msa0440570:CDS | 35.0% | |
| TAGCCAATATAGGATCATGA+AGG | - | chr3_3:8053452-8053471 | None:intergenic | 35.0% | |
| !!! | TTTTAGATGTTTCTGGAGAG+GGG | + | chr3_3:8053526-8053545 | Msa0440570:intron | 35.0% |
| GATTCAAAACCTAAGAACCT+TGG | + | chr3_3:8053612-8053631 | Msa0440570:CDS | 35.0% | |
| AACCTTGGAGTGAAGAAATT+TGG | + | chr3_3:8053627-8053646 | Msa0440570:CDS | 35.0% | |
| AGTTTACGACATGCAATTAG+TGG | + | chr3_3:8053676-8053695 | Msa0440570:intron | 35.0% | |
| GTTTACGACATGCAATTAGT+GGG | + | chr3_3:8053677-8053696 | Msa0440570:intron | 35.0% | |
| ATGTTCAGAAATTCCAGGTT+CGG | - | chr3_3:8053709-8053728 | None:intergenic | 35.0% | |
| GAATCATGTTCAGAAATTCC+AGG | - | chr3_3:8053714-8053733 | None:intergenic | 35.0% | |
| TACCTGGAAACATCATTGTT+AGG | + | chr3_3:8053791-8053810 | Msa0440570:CDS | 35.0% | |
| TTTCATCCTGGAAACTATGT+TGG | + | chr3_3:8053829-8053848 | Msa0440570:CDS | 35.0% | |
| !!! | TTTTTGCTTTGAAAGAGGGA+TGG | + | chr3_3:8053872-8053891 | Msa0440570:CDS | 35.0% |
| !!! | TTTTGCTTTGAAAGAGGGAT+GGG | + | chr3_3:8053873-8053892 | Msa0440570:CDS | 35.0% |
| TGAAAAACAACAGACTTCAG+AGG | - | chr3_3:8054105-8054124 | None:intergenic | 35.0% | |
| !!! | GAAGTCTGTTGTTTTTCACA+TGG | + | chr3_3:8054107-8054126 | Msa0440570:three_prime_UTR | 35.0% |
| GTTGTATAAAGAGGTCTTTG+AGG | + | chr3_3:8054258-8054277 | Msa0440570:three_prime_UTR | 35.0% | |
| CTTTCTTCCTCTTCTCTCAT+CGG | + | chr3_3:8051311-8051330 | Msa0440570:CDS | 40.0% | |
| GTTAGGGTTTATAGCAGAAG+AGG | - | chr3_3:8051430-8051449 | None:intergenic | 40.0% | |
| !!! | TTTTGAAGTAAAAGCCGCTG+TGG | - | chr3_3:8051585-8051604 | None:intergenic | 40.0% |
| ! | AAACTTGGCTTAGGTGGTTT+TGG | + | chr3_3:8052097-8052116 | Msa0440570:intron | 40.0% |
| AGTAAGGAGAGTAGATCAGA+TGG | + | chr3_3:8052149-8052168 | Msa0440570:intron | 40.0% | |
| TATGTTATCAGATTGGCACG+AGG | + | chr3_3:8052376-8052395 | Msa0440570:intron | 40.0% | |
| GAGAGAGGATGTATAGTAGT+AGG | + | chr3_3:8052403-8052422 | Msa0440570:intron | 40.0% | |
| TATGGTTGTCTCTGATCCAA+TGG | + | chr3_3:8052767-8052786 | Msa0440570:intron | 40.0% | |
| GGCTCAATCATTTGCTTCAT+TGG | + | chr3_3:8052957-8052976 | Msa0440570:intron | 40.0% | |
| !! | TGCTTCATTGGTTTCAACAG+TGG | + | chr3_3:8052969-8052988 | Msa0440570:intron | 40.0% |
| CAGTTGTGGGATCAGTTATT+GGG | + | chr3_3:8052992-8053011 | Msa0440570:intron | 40.0% | |
| ATTCACCCGTGATCATTACA+GGG | - | chr3_3:8053204-8053223 | None:intergenic | 40.0% | |
| !!! | TGAATCGCGTCCATTTTTTG+TGG | - | chr3_3:8053598-8053617 | None:intergenic | 40.0% |
| TTCTTCACTCCAAGGTTCTT+AGG | - | chr3_3:8053624-8053643 | None:intergenic | 40.0% | |
| CACCAAATTTCTTCACTCCA+AGG | - | chr3_3:8053632-8053651 | None:intergenic | 40.0% | |
| CTTGGAGTGAAGAAATTTGG+TGG | + | chr3_3:8053630-8053649 | Msa0440570:CDS | 40.0% | |
| ! | AGTGAAGAAATTTGGTGGAG+AGG | + | chr3_3:8053635-8053654 | Msa0440570:CDS | 40.0% |
| TGCCTAACAATGATGTTTCC+AGG | - | chr3_3:8053796-8053815 | None:intergenic | 40.0% | |
| AACATCATTGTTAGGCAACG+TGG | + | chr3_3:8053799-8053818 | Msa0440570:CDS | 40.0% | |
| GTGCATGTTGAACCTAAAGA+AGG | + | chr3_3:8053934-8053953 | Msa0440570:CDS | 40.0% | |
| CAGAAACATCAGCAAACACA+GGG | - | chr3_3:8053972-8053991 | None:intergenic | 40.0% | |
| GATCATGCTTGAAATTGGTC+AGG | - | chr3_3:8054027-8054046 | None:intergenic | 40.0% | |
| ACTTCAGAGGTGGAACATTT+AGG | - | chr3_3:8054092-8054111 | None:intergenic | 40.0% | |
| AAAACAACAGACTTCAGAGG+TGG | - | chr3_3:8054102-8054121 | None:intergenic | 40.0% | |
| AGAGAAGAGGAAGAAAGCGA+CGG | - | chr3_3:8051308-8051327 | None:intergenic | 45.0% | |
| AAGGAGAGTAGATCAGATGG+AGG | + | chr3_3:8052152-8052171 | Msa0440570:intron | 45.0% | |
| CAAAGACAAGCTAAGGCCAT+TGG | - | chr3_3:8052786-8052805 | None:intergenic | 45.0% | |
| GTTTCAACAGTGGCAGTTGT+GGG | + | chr3_3:8052979-8052998 | Msa0440570:intron | 45.0% | |
| GCAGTTGTGGGATCAGTTAT+TGG | + | chr3_3:8052991-8053010 | Msa0440570:intron | 45.0% | |
| CATTCACCCGTGATCATTAC+AGG | - | chr3_3:8053205-8053224 | None:intergenic | 45.0% | |
| !! | CTGTCTTTTTGGTAGCCCAA+CGG | - | chr3_3:8053569-8053588 | None:intergenic | 45.0% |
| ACAGCTGGGTCCACAAAAAA+TGG | + | chr3_3:8053585-8053604 | Msa0440570:CDS | 45.0% | |
| ATCATGCAGAGGGTAATACC+TGG | + | chr3_3:8053775-8053794 | Msa0440570:intron | 45.0% | |
| TCCTGGAAACTATGTTGGAC+TGG | + | chr3_3:8053834-8053853 | Msa0440570:CDS | 45.0% | |
| CCTGGAAACTATGTTGGACT+GGG | + | chr3_3:8053835-8053854 | Msa0440570:CDS | 45.0% | |
| CTGGAAACTATGTTGGACTG+GGG | + | chr3_3:8053836-8053855 | Msa0440570:CDS | 45.0% | |
| TTTGAACGCAACAAGCTGAC+TGG | + | chr3_3:8053901-8053920 | Msa0440570:CDS | 45.0% | |
| TGGAGGACATGACCTTCTTT+AGG | - | chr3_3:8053949-8053968 | None:intergenic | 45.0% | |
| AAACATCAGCAAACACAGGG+TGG | - | chr3_3:8053969-8053988 | None:intergenic | 45.0% | |
| GCAGAAACATCAGCAAACAC+AGG | - | chr3_3:8053973-8053992 | None:intergenic | 45.0% | |
| TCTGCATCCGAACCAAAAGT+TGG | + | chr3_3:8053988-8054007 | Msa0440570:CDS | 45.0% | |
| !! | TGCGACACCAACTTTTGGTT+CGG | - | chr3_3:8053998-8054017 | None:intergenic | 45.0% |
| ! | CAGATTGCGACACCAACTTT+TGG | - | chr3_3:8054003-8054022 | None:intergenic | 45.0% |
| AAGCGACGGTGACGAAAAGA+TGG | - | chr3_3:8051294-8051313 | None:intergenic | 50.0% | |
| GAGGTTACCGATGAGAGAAG+AGG | - | chr3_3:8051321-8051340 | None:intergenic | 50.0% | |
| GGTAACATTAGGAGCCCCTT+TGG | + | chr3_3:8051832-8051851 | Msa0440570:intron | 50.0% | |
| AACTCTCTCTAGGCCCCATT+TGG | - | chr3_3:8052046-8052065 | None:intergenic | 50.0% | |
| AATGGGGCCTAGAGAGAGTT+AGG | + | chr3_3:8052046-8052065 | Msa0440570:intron | 50.0% | |
| ATGGGGCCTAGAGAGAGTTA+GGG | + | chr3_3:8052047-8052066 | Msa0440570:intron | 50.0% | |
| GTGCTACCCTAACTCTCTCT+AGG | - | chr3_3:8052056-8052075 | None:intergenic | 50.0% | |
| ! | TCTAAGACATAGGGCCCGTT+TGG | + | chr3_3:8052456-8052475 | Msa0440570:intron | 50.0% |
| ACGGACAAGTCCACCGAAAT+TGG | + | chr3_3:8052678-8052697 | Msa0440570:intron | 50.0% | |
| TCACACTCAAGTCTCTCCCT+CGG | + | chr3_3:8052724-8052743 | Msa0440570:intron | 50.0% | |
| GGTTTCAACAGTGGCAGTTG+TGG | + | chr3_3:8052978-8052997 | Msa0440570:intron | 50.0% | |
| AGGCAAAAGCTCCTCAGACT+TGG | - | chr3_3:8053041-8053060 | None:intergenic | 50.0% | |
| ! | TTCTGGAGAGGGGTTGAGTT+TGG | + | chr3_3:8053536-8053555 | Msa0440570:CDS | 50.0% |
| !! | TCTTTTTGGTAGCCCAACGG+CGG | - | chr3_3:8053566-8053585 | None:intergenic | 50.0% |
| TGGGCTACCAAAAAGACAGC+TGG | + | chr3_3:8053570-8053589 | Msa0440570:CDS | 50.0% | |
| GGGCTACCAAAAAGACAGCT+GGG | + | chr3_3:8053571-8053590 | Msa0440570:CDS | 50.0% | |
| ! | TGTGGACCCAGCTGTCTTTT+TGG | - | chr3_3:8053580-8053599 | None:intergenic | 50.0% |
| ! | CGTGGTACTCGTTTTCATCC+TGG | + | chr3_3:8053817-8053836 | Msa0440570:CDS | 50.0% |
| CCCAGTCCAACATAGTTTCC+AGG | - | chr3_3:8053838-8053857 | None:intergenic | 50.0% | |
| !! | GCGGGGAGGAACTGATTTTC+TGG | - | chr3_3:8051146-8051165 | None:intergenic | 55.0% |
| GAAAATCAGTTCCTCCCCGC+CGG | + | chr3_3:8051146-8051165 | Msa0440570:CDS | 55.0% | |
| CGGTGACGAAAAGATGGACG+CGG | - | chr3_3:8051288-8051307 | None:intergenic | 55.0% | |
| GACATAGGGCCCGTTTGGAT+TGG | + | chr3_3:8052461-8052480 | Msa0440570:intron | 55.0% | |
| CCAGCAGTGCTTCTGTAGAC+AGG | - | chr3_3:8053425-8053444 | None:intergenic | 55.0% | |
| !! | CCTGTCTACAGAAGCACTGC+TGG | + | chr3_3:8053422-8053441 | Msa0440570:CDS | 55.0% |
| !! | TGAGTTTGGTGTTCCGCCGT+TGG | + | chr3_3:8053550-8053569 | Msa0440570:CDS | 55.0% |
| !! | GAGTTTGGTGTTCCGCCGTT+GGG | + | chr3_3:8053551-8053570 | Msa0440570:CDS | 55.0% |
| !! | TAGTGGGAGAGTACCGAACC+TGG | + | chr3_3:8053693-8053712 | Msa0440570:intron | 55.0% |
| ! | ACAAGCTGACTGGTCGCAAG+TGG | + | chr3_3:8053911-8053930 | Msa0440570:CDS | 55.0% |
| ! | CAAGCTGACTGGTCGCAAGT+GGG | + | chr3_3:8053912-8053931 | Msa0440570:CDS | 55.0% |
| CATCAGCAAACACAGGGTGG+AGG | - | chr3_3:8053966-8053985 | None:intergenic | 55.0% | |
| GTGTTAGCTGTTCTCCGGCG+GGG | - | chr3_3:8051163-8051182 | None:intergenic | 60.0% | |
| GGTGTTAGCTGTTCTCCGGC+GGG | - | chr3_3:8051164-8051183 | None:intergenic | 60.0% | |
| TTGGCACGAGGCTGTGAGAG+AGG | + | chr3_3:8052388-8052407 | Msa0440570:intron | 60.0% | |
| TTAGCTGTTCTCCGGCGGGG+AGG | - | chr3_3:8051160-8051179 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 8051122 | 8054378 | 8051122 | ID=Msa0440570;Name=Msa0440570 |
| chr3_3 | mRNA | 8051122 | 8054378 | 8051122 | ID=Msa0440570-mRNA-1;Parent=Msa0440570;Name=Msa0440570-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|1|1|0.5|0.6|5|355|194 |
| chr3_3 | exon | 8051122 | 8051183 | 8051122 | ID=Msa0440570-mRNA-1:exon:1676;Parent=Msa0440570-mRNA-1 |
| chr3_3 | exon | 8051284 | 8051332 | 8051284 | ID=Msa0440570-mRNA-1:exon:1677;Parent=Msa0440570-mRNA-1 |
| chr3_3 | exon | 8053335 | 8053443 | 8053335 | ID=Msa0440570-mRNA-1:exon:1678;Parent=Msa0440570-mRNA-1 |
| chr3_3 | exon | 8053532 | 8053656 | 8053532 | ID=Msa0440570-mRNA-1:exon:1679;Parent=Msa0440570-mRNA-1 |
| chr3_3 | exon | 8053784 | 8054378 | 8053784 | ID=Msa0440570-mRNA-1:exon:1680;Parent=Msa0440570-mRNA-1 |
| chr3_3 | CDS | 8051122 | 8051183 | 8051122 | ID=Msa0440570-mRNA-1:cds;Parent=Msa0440570-mRNA-1 |
| chr3_3 | CDS | 8051284 | 8051332 | 8051284 | ID=Msa0440570-mRNA-1:cds;Parent=Msa0440570-mRNA-1 |
| chr3_3 | CDS | 8053335 | 8053443 | 8053335 | ID=Msa0440570-mRNA-1:cds;Parent=Msa0440570-mRNA-1 |
| chr3_3 | CDS | 8053532 | 8053656 | 8053532 | ID=Msa0440570-mRNA-1:cds;Parent=Msa0440570-mRNA-1 |
| chr3_3 | CDS | 8053784 | 8054023 | 8053784 | ID=Msa0440570-mRNA-1:cds;Parent=Msa0440570-mRNA-1 |
| chr3_3 | three_prime_UTR | 8054024 | 8054378 | 8054024 | ID=Msa0440570-mRNA-1:three_prime_utr;Parent=Msa0440570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
