Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177360 | sp|Q9FT52|ATP5H_ARATH | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.24e-100 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177360 | G7I9M9 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 1.79e-124 | 357 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037410 | Msa0177360 | 0.810933 | 9.008435e-51 | -8.615850e-47 |
| Msa0069440 | Msa0177360 | 0.973819 | 4.435610e-137 | -8.615850e-47 |
| Msa0097600 | Msa0177360 | 0.806140 | 9.507136e-50 | -8.615850e-47 |
| Msa0131490 | Msa0177360 | 0.942502 | 6.412517e-102 | -8.615850e-47 |
| Msa0131560 | Msa0177360 | 0.967899 | 6.437495e-128 | -8.615850e-47 |
| Msa0174770 | Msa0177360 | 0.808284 | 3.339613e-50 | -8.615850e-47 |
| Msa0177360 | Msa0178120 | 0.807404 | 5.138985e-50 | -8.615850e-47 |
| Msa0177360 | Msa0181610 | 0.810354 | 1.201710e-50 | -8.615850e-47 |
| Msa0177360 | Msa0221030 | 0.834195 | 3.449630e-56 | -8.615850e-47 |
| Msa0177360 | Msa0225150 | 0.807704 | 4.437733e-50 | -8.615850e-47 |
| Msa0177360 | Msa0262480 | 0.814601 | 1.418118e-51 | -8.615850e-47 |
| Msa0177360 | Msa0291520 | 0.822378 | 2.446327e-53 | -8.615850e-47 |
| Msa0177360 | Msa0300350 | 0.812222 | 4.725485e-51 | -8.615850e-47 |
| Msa0177360 | Msa0359600 | 0.839030 | 2.021331e-57 | -8.615850e-47 |
| Msa0177360 | Msa0434920 | 0.812429 | 4.258038e-51 | -8.615850e-47 |
| Msa0177360 | Msa0440570 | 0.806221 | 9.139974e-50 | -8.615850e-47 |
| Msa0177360 | Msa0478870 | 0.805380 | 1.372677e-49 | -8.615850e-47 |
| Msa0177360 | Msa0534750 | 0.804550 | 2.047529e-49 | -8.615850e-47 |
| Msa0177360 | Msa0568470 | 0.865403 | 6.055366e-65 | -8.615850e-47 |
| Msa0177360 | Msa0573500 | 0.806988 | 6.295702e-50 | -8.615850e-47 |
| Msa0177360 | Msa0581070 | 0.804518 | 2.078470e-49 | -8.615850e-47 |
| Msa0177360 | Msa0581600 | 0.956958 | 8.589423e-115 | -8.615850e-47 |
| Msa0177360 | Msa0604960 | 0.843301 | 1.524724e-58 | -8.615850e-47 |
| Msa0177360 | Msa0654870 | 0.801880 | 7.309135e-49 | -8.615850e-47 |
| Msa0177360 | Msa0659030 | 0.903217 | 4.358896e-79 | -8.615850e-47 |
| Msa0177360 | Msa0660590 | 0.970931 | 2.254375e-132 | -8.615850e-47 |
| Msa0177360 | Msa0683780 | 0.807530 | 4.832347e-50 | -8.615850e-47 |
| Msa0177360 | Msa0705000 | 0.904508 | 1.140400e-79 | -8.615850e-47 |
| Msa0177360 | Msa0705040 | 0.912834 | 1.236299e-83 | -8.615850e-47 |
| Msa0177360 | Msa0707390 | 0.806686 | 7.293467e-50 | -8.615850e-47 |
| Msa0177360 | Msa0709780 | 0.846079 | 2.720703e-59 | -8.615850e-47 |
| Msa0177360 | Msa0785130 | 0.826050 | 3.354806e-54 | -8.615850e-47 |
| Msa0177360 | Msa0859710 | 0.814876 | 1.231988e-51 | -8.615850e-47 |
| Msa0177360 | Msa0945480 | 0.814490 | 1.500505e-51 | -8.615850e-47 |
| Msa0177360 | Msa1125500 | 0.823824 | 1.125001e-53 | -8.615850e-47 |
| Msa0177360 | Msa1125580 | 0.837932 | 3.881708e-57 | -8.615850e-47 |
| Msa0177360 | Msa1166870 | 0.812670 | 3.771627e-51 | -8.615850e-47 |
| Msa0177360 | Msa1184370 | 0.820010 | 8.595422e-53 | -8.615850e-47 |
| Msa0177360 | Msa1201830 | 0.828508 | 8.645362e-55 | -8.615850e-47 |
| Msa0177360 | Msa1227690 | 0.848906 | 4.547281e-60 | -8.615850e-47 |
| Msa0177360 | Msa1241190 | 0.821529 | 3.847007e-53 | -8.615850e-47 |
| Msa0177360 | Msa1294840 | 0.824771 | 6.738299e-54 | -8.615850e-47 |
| Msa0177360 | Msa1316680 | 0.801004 | 1.104600e-48 | -8.615850e-47 |
| Msa0177360 | Msa1349570 | 0.816453 | 5.486551e-52 | -8.615850e-47 |
| Msa0177360 | Msa1363860 | 0.801044 | 1.083847e-48 | -8.615850e-47 |
| Msa0177360 | Msa1369190 | 0.812029 | 5.207240e-51 | -8.615850e-47 |
| Msa0177360 | Msa1374240 | 0.822381 | 2.442212e-53 | -8.615850e-47 |
| Msa0177360 | Msa1401390 | 0.824180 | 9.283281e-54 | -8.615850e-47 |
| Msa0177360 | Msa1426490 | 0.825876 | 3.690683e-54 | -8.615850e-47 |
| Msa0177360 | Msa1427560 | 0.809768 | 1.607099e-50 | -8.615850e-47 |
| Msa0177360 | Msa1435440 | 0.824812 | 6.590759e-54 | -8.615850e-47 |
| Msa0177360 | Msa1442850 | 0.822571 | 2.205623e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177360 | MtrunA17_Chr1g0200191 | 97.740 | 177 | 4 | 0 | 1 | 177 | 1 | 177 | 3.45e-128 | 357 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0177360 | AT3G52300.1 | 80.952 | 168 | 32 | 0 | 1 | 168 | 1 | 168 | 3.29e-101 | 288 |
| Msa0177360 | AT3G52300.2 | 78.704 | 108 | 23 | 0 | 1 | 108 | 1 | 108 | 8.71e-62 | 187 |
Find 49 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATAATATTCCCAGTCTA+TGG | 0.167189 | 1_4:-64323447 | None:intergenic |
| CAGTCAAGACACCCAATTTC+AGG | 0.179551 | 1_4:+64326006 | Msa0177360:three_prime_UTR |
| CTTACCAGTGCATCAAATTT+AGG | 0.208576 | 1_4:-64325450 | None:intergenic |
| GTATACATTTGTTCTGATTC+TGG | 0.223703 | 1_4:+64326077 | Msa0177360:three_prime_UTR |
| ATTTAGAAACTGTTGTCTTA+TGG | 0.283362 | 1_4:+64325980 | Msa0177360:three_prime_UTR |
| AGGAGATTAGGAACGATAAC+TGG | 0.292837 | 1_4:+64325793 | Msa0177360:CDS |
| GCTGAAGTTGGTTGAGCTTA+AGG | 0.315735 | 1_4:+64325550 | Msa0177360:intron |
| GTCCCAATCGATCTTCTTCC+CGG | 0.344356 | 1_4:-64322590 | None:intergenic |
| AATAAATTGTTGTGTTTGTC+TGG | 0.357169 | 1_4:+64326051 | Msa0177360:three_prime_UTR |
| TCTGAAAGAATCTGAACGTT+TGG | 0.374930 | 1_4:+64325589 | Msa0177360:CDS |
| AAAAGGAATTGGCACTCGTT+TGG | 0.433018 | 1_4:+64323469 | Msa0177360:CDS |
| AGCAATTTGATGAGGAGATT+AGG | 0.438102 | 1_4:+64325781 | Msa0177360:CDS |
| TCAAATTGCTTCTTCAGCTC+AGG | 0.438466 | 1_4:-64325768 | None:intergenic |
| AGTTACTGTGTCAACAAACT+TGG | 0.447924 | 1_4:-64325415 | None:intergenic |
| GACTGGGAATATTATAGAAA+AGG | 0.455154 | 1_4:+64323452 | Msa0177360:CDS |
| GAATATTATAGAAAAGGAAT+TGG | 0.458956 | 1_4:+64323458 | Msa0177360:CDS |
| TAAGCCTAAATTTGATGCAC+TGG | 0.467869 | 1_4:+64325446 | Msa0177360:CDS |
| AGGAGCCTGAGCCCATAGAC+TGG | 0.471648 | 1_4:+64323435 | Msa0177360:intron |
| AGAATCTGAACGTTTGGAAA+AGG | 0.472141 | 1_4:+64325595 | Msa0177360:CDS |
| CTATAATATTCCCAGTCTAT+GGG | 0.473165 | 1_4:-64323446 | None:intergenic |
| ATTTGTTCTGATTCTGGCAA+TGG | 0.477285 | 1_4:+64326083 | Msa0177360:three_prime_UTR |
| AAATTCACGACGAGCTTCAT+CGG | 0.482178 | 1_4:-64322635 | None:intergenic |
| ACAGATGTTGCATTCAAAGC+CGG | 0.489390 | 1_4:+64322571 | Msa0177360:CDS |
| GCAAGGAAAACATCAACTTC+AGG | 0.493258 | 1_4:-64325847 | None:intergenic |
| TCAAATTTAGGCTTATATTG+AGG | 0.499518 | 1_4:-64325438 | None:intergenic |
| AGGAATTGGCACTCGTTTGG+TGG | 0.500877 | 1_4:+64323472 | Msa0177360:CDS |
| CTTCTTCAGCTCAGGATGCT+CGG | 0.501457 | 1_4:-64325760 | None:intergenic |
| CAGATGTTGCATTCAAAGCC+GGG | 0.515624 | 1_4:+64322572 | Msa0177360:CDS |
| TATTCCCAGTCTATGGGCTC+AGG | 0.528775 | 1_4:-64323440 | None:intergenic |
| AAGCCGGGAAGAAGATCGAT+TGG | 0.530458 | 1_4:+64322587 | Msa0177360:CDS |
| GGAAGAAGATCGATTGGGAC+GGG | 0.534761 | 1_4:+64322593 | Msa0177360:CDS |
| AAAGTACTCATCTGCTGTCA+TGG | 0.536378 | 1_4:-64325736 | None:intergenic |
| GGAGATTAGGAACGATAACT+GGG | 0.553647 | 1_4:+64325794 | Msa0177360:CDS |
| GTTACTGTGTCAACAAACTT+GGG | 0.562398 | 1_4:-64325414 | None:intergenic |
| AGCCGGGAAGAAGATCGATT+GGG | 0.567684 | 1_4:+64322588 | Msa0177360:CDS |
| GGAGCCTGAGCCCATAGACT+GGG | 0.568751 | 1_4:+64323436 | Msa0177360:intron |
| GAAGATCGATTGGGACGGGA+TGG | 0.577380 | 1_4:+64322597 | Msa0177360:CDS |
| TGCTAATGTACAGTCGCTGA+AGG | 0.578326 | 1_4:+64325622 | Msa0177360:CDS |
| GGTTGAGCTTAAGGAAGCAG+AGG | 0.581516 | 1_4:+64325559 | Msa0177360:CDS |
| CTCTGGTAACGATAGTGTCA+AGG | 0.588551 | 1_4:+64322446 | None:intergenic |
| TATTATTTATTAAACCAGCA+AGG | 0.594786 | 1_4:-64325864 | None:intergenic |
| ACGATAGTGTCAAGGTGCGA+AGG | 0.595692 | 1_4:+64322454 | None:intergenic |
| ACTCGAAACAAAGTTCAGCC+AGG | 0.598938 | 1_4:+64322696 | Msa0177360:CDS |
| AAAGCGAAAGCGAAAATGAG+CGG | 0.621372 | 1_4:+64322532 | Msa0177360:exon |
| GGGAAGAAGATCGATTGGGA+CGG | 0.627371 | 1_4:+64322592 | Msa0177360:CDS |
| GCTGAAGAAGCAATTTGATG+AGG | 0.630857 | 1_4:+64325773 | Msa0177360:CDS |
| TTACTGTGTCAACAAACTTG+GGG | 0.648687 | 1_4:-64325413 | None:intergenic |
| AAACTATCAAAGGTCACACA+AGG | 0.675809 | 1_4:+64326144 | Msa0177360:three_prime_UTR |
| GAGATTAGGAACGATAACTG+GGG | 0.757484 | 1_4:+64325795 | Msa0177360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAAATTATTTTTTTTAT+TGG | + | chr1_4:64324193-64324212 | Msa0177360:intron | 0.0% |
| !! | TAAAAAAATACTAATATAAG+GGG | - | chr1_4:64323549-64323568 | None:intergenic | 10.0% |
| !! | TAAAAATGAGAAATTAATAT+AGG | + | chr1_4:64324083-64324102 | Msa0177360:intron | 10.0% |
| !!! | TTTTTTTAATCTGTATTTAA+TGG | + | chr1_4:64324343-64324362 | Msa0177360:intron | 10.0% |
| !!! | ATATATTCTAATGTAAATTT+TGG | - | chr1_4:64324913-64324932 | None:intergenic | 10.0% |
| !!! | TTTTTAGTGTTTTTATTATT+AGG | - | chr1_4:64326113-64326132 | None:intergenic | 10.0% |
| !! | AATACATAATCTATTTGTAT+AGG | - | chr1_4:64323153-64323172 | None:intergenic | 15.0% |
| !!! | TAATTTGATAACTACATAAT+TGG | - | chr1_4:64323333-64323352 | None:intergenic | 15.0% |
| !!! | AGTATTTTTTTATTTGTCAA+TGG | + | chr1_4:64323557-64323576 | Msa0177360:intron | 15.0% |
| !!! | TACTGTAAATATTTGTATTT+TGG | - | chr1_4:64324243-64324262 | None:intergenic | 15.0% |
| !!! | AATTATTTCTCAAATTGAAA+AGG | + | chr1_4:64324969-64324988 | Msa0177360:intron | 15.0% |
| !! | AAATAACAATATATTGAATG+AGG | - | chr1_4:64325050-64325069 | None:intergenic | 15.0% |
| !!! | TACATTATTTTTTTGTAACT+TGG | + | chr1_4:64325889-64325908 | Msa0177360:three_prime_UTR | 15.0% |
| !! | AATAGTTAAAAAACTATCAA+AGG | + | chr1_4:64326134-64326153 | Msa0177360:three_prime_UTR | 15.0% |
| !! | TGTAGTTATCAAATTATTAC+CGG | + | chr1_4:64323337-64323356 | Msa0177360:intron | 20.0% |
| !! | GAATATTATAGAAAAGGAAT+TGG | + | chr1_4:64323458-64323477 | Msa0177360:CDS | 20.0% |
| !! | AATAACTTGACAACAAATAT+TGG | - | chr1_4:64324172-64324191 | None:intergenic | 20.0% |
| !! | TCATAATTATATAACTGAAC+TGG | - | chr1_4:64324659-64324678 | None:intergenic | 20.0% |
| !!! | GTTTTATAGTTGTTTTTTTC+AGG | + | chr1_4:64324746-64324765 | Msa0177360:intron | 20.0% |
| !!! | GTTAAATTTTAACATGCATT+AGG | - | chr1_4:64324889-64324908 | None:intergenic | 20.0% |
| !! | AGTTATTGCCTAAATATTTA+TGG | + | chr1_4:64325265-64325284 | Msa0177360:intron | 20.0% |
| !! | AATGGTATGTAAAATTTGAA+TGG | - | chr1_4:64325350-64325369 | None:intergenic | 20.0% |
| !! | AACATCAAAAGTTGAATTAA+TGG | - | chr1_4:64325368-64325387 | None:intergenic | 20.0% |
| !!! | TTCTCAGTTTTATGTAATAT+TGG | + | chr1_4:64325666-64325685 | Msa0177360:intron | 20.0% |
| !! | TATTATTTATTAAACCAGCA+AGG | - | chr1_4:64325867-64325886 | None:intergenic | 20.0% |
| !!! | AAAAACATTTTCCTGAAATT+GGG | - | chr1_4:64326020-64326039 | None:intergenic | 20.0% |
| !! | CTTCATCATCAATTTTGAAT+TGG | + | chr1_4:64322882-64322901 | Msa0177360:intron | 25.0% |
| !!! | ATCATGTTTTAGTGCATTTT+CGG | + | chr1_4:64322914-64322933 | Msa0177360:intron | 25.0% |
| ! | GTATTCAAAACATGATGAAA+AGG | - | chr1_4:64323123-64323142 | None:intergenic | 25.0% |
| ! | TATCATTTCTTATTAATCGC+AGG | + | chr1_4:64323415-64323434 | Msa0177360:intron | 25.0% |
| ! | AGGATATTGATAAATTCAAC+TGG | + | chr1_4:64323682-64323701 | Msa0177360:intron | 25.0% |
| !!! | AGTTCAGTTTTTTTAAGGAT+CGG | - | chr1_4:64323843-64323862 | None:intergenic | 25.0% |
| !!! | CAAACAGTTCAGTTTTTTTA+AGG | - | chr1_4:64323848-64323867 | None:intergenic | 25.0% |
| !! | AAAAAGATAATCTTGATAGC+TGG | - | chr1_4:64324511-64324530 | None:intergenic | 25.0% |
| !! | AGCTATCAAGATTATCTTTT+TGG | + | chr1_4:64324510-64324529 | Msa0177360:intron | 25.0% |
| ! | AATTATGAACCATAGTTTAC+TGG | + | chr1_4:64324671-64324690 | Msa0177360:intron | 25.0% |
| ! | ATGTCTATCAATTTCAGATA+GGG | - | chr1_4:64324819-64324838 | None:intergenic | 25.0% |
| ! | AATGTCTATCAATTTCAGAT+AGG | - | chr1_4:64324820-64324839 | None:intergenic | 25.0% |
| ! | CATTAGAATATATGAAACTG+TGG | + | chr1_4:64324920-64324939 | Msa0177360:intron | 25.0% |
| ! | AAGTACATAAGAAAAGAAAC+TGG | + | chr1_4:64324992-64325011 | Msa0177360:intron | 25.0% |
| ! | TAAAACCTGGAAATTGTATA+TGG | + | chr1_4:64325088-64325107 | Msa0177360:intron | 25.0% |
| ! | GACTACATCCATAAATATTT+AGG | - | chr1_4:64325276-64325295 | None:intergenic | 25.0% |
| ! | TCAAATTTAGGCTTATATTG+AGG | - | chr1_4:64325441-64325460 | None:intergenic | 25.0% |
| !! | TTTTCTGTGAAAACAAACAA+TGG | - | chr1_4:64325707-64325726 | None:intergenic | 25.0% |
| !!! | ATTGTTTGTTTTCACAGAAA+AGG | + | chr1_4:64325706-64325725 | Msa0177360:intron | 25.0% |
| ! | ATTTAGAAACTGTTGTCTTA+TGG | + | chr1_4:64325980-64325999 | Msa0177360:three_prime_UTR | 25.0% |
| !! | CAAAAACATTTTCCTGAAAT+TGG | - | chr1_4:64326021-64326040 | None:intergenic | 25.0% |
| !!! | ATTTCAGGAAAATGTTTTTG+TGG | + | chr1_4:64326021-64326040 | Msa0177360:three_prime_UTR | 25.0% |
| ! | AATAAATTGTTGTGTTTGTC+TGG | + | chr1_4:64326051-64326070 | Msa0177360:three_prime_UTR | 25.0% |
| AGCATCTAAGAACAAAATGA+AGG | - | chr1_4:64322787-64322806 | None:intergenic | 30.0% | |
| TTGTACCTTTGTAATGATGT+TGG | + | chr1_4:64323016-64323035 | Msa0177360:intron | 30.0% | |
| TGTACCTTTGTAATGATGTT+GGG | + | chr1_4:64323017-64323036 | Msa0177360:intron | 30.0% | |
| AGATTATGTATTCAGTTACG+AGG | + | chr1_4:64323161-64323180 | Msa0177360:intron | 30.0% | |
| CTATAATATTCCCAGTCTAT+GGG | - | chr1_4:64323449-64323468 | None:intergenic | 30.0% | |
| TCTATAATATTCCCAGTCTA+TGG | - | chr1_4:64323450-64323469 | None:intergenic | 30.0% | |
| GACTGGGAATATTATAGAAA+AGG | + | chr1_4:64323452-64323471 | Msa0177360:CDS | 30.0% | |
| GTACCATTGAATACAAGAAT+CGG | - | chr1_4:64323710-64323729 | None:intergenic | 30.0% | |
| ! | TGGTACCATATTCTTTTCAT+AGG | + | chr1_4:64323724-64323743 | Msa0177360:intron | 30.0% |
| ! | GGTACCATATTCTTTTCATA+GGG | + | chr1_4:64323725-64323744 | Msa0177360:intron | 30.0% |
| TCTTCCCTATGAAAAGAATA+TGG | - | chr1_4:64323732-64323751 | None:intergenic | 30.0% | |
| !!! | TTCAGTTTTTTTAAGGATCG+GGG | - | chr1_4:64323841-64323860 | None:intergenic | 30.0% |
| !!! | GTTCAGTTTTTTTAAGGATC+GGG | - | chr1_4:64323842-64323861 | None:intergenic | 30.0% |
| !! | ACTGAACTACTTTTGAAGAA+TGG | - | chr1_4:64323921-64323940 | None:intergenic | 30.0% |
| ! | AAAGCAGTTTTACAAACAGT+TGG | + | chr1_4:64324124-64324143 | Msa0177360:intron | 30.0% |
| CGAATGAGACAAAAAGATAT+TGG | - | chr1_4:64324550-64324569 | None:intergenic | 30.0% | |
| TAAGCAAAACTGCAACTAAT+GGG | - | chr1_4:64324631-64324650 | None:intergenic | 30.0% | |
| AATTATATAACTGAACTGGC+TGG | - | chr1_4:64324655-64324674 | None:intergenic | 30.0% | |
| CTGATACTTAATAGCTTGAA+CGG | - | chr1_4:64324717-64324736 | None:intergenic | 30.0% | |
| !!! | TTGTTTTTTTCAGGTCAGTT+AGG | + | chr1_4:64324755-64324774 | Msa0177360:intron | 30.0% |
| TGTCTATCAATTTCAGATAG+GGG | - | chr1_4:64324818-64324837 | None:intergenic | 30.0% | |
| ! | ATATATGAAACTGTGGATTG+TGG | + | chr1_4:64324927-64324946 | Msa0177360:intron | 30.0% |
| ATTGAATGAGGCAAAGTTAT+AGG | - | chr1_4:64325038-64325057 | None:intergenic | 30.0% | |
| ! | TGTTATTTGACCTATTCACA+TGG | + | chr1_4:64325062-64325081 | Msa0177360:intron | 30.0% |
| GTTATTTGACCTATTCACAT+GGG | + | chr1_4:64325063-64325082 | Msa0177360:intron | 30.0% | |
| TGATACCATATACAATTTCC+AGG | - | chr1_4:64325096-64325115 | None:intergenic | 30.0% | |
| ATGCACGATTAATAAATGCA+AGG | - | chr1_4:64325175-64325194 | None:intergenic | 30.0% | |
| ! | TCGTGCATTGAATTGATTTA+AGG | + | chr1_4:64325187-64325206 | Msa0177360:intron | 30.0% |
| GGTATGTAAAATTTGAATGG+CGG | - | chr1_4:64325347-64325366 | None:intergenic | 30.0% | |
| CTTGATTGATAGAGAAAAGT+TGG | - | chr1_4:64325497-64325516 | None:intergenic | 30.0% | |
| ! | TGGTTTTTCTCCAGTTTAAA+AGG | + | chr1_4:64325909-64325928 | Msa0177360:three_prime_UTR | 30.0% |
| ! | CTGCAGTTGTCAAAATTTTA+TGG | + | chr1_4:64325944-64325963 | Msa0177360:three_prime_UTR | 30.0% |
| GTATACATTTGTTCTGATTC+TGG | + | chr1_4:64326077-64326096 | Msa0177360:three_prime_UTR | 30.0% | |
| TGTGAAGGAATTTATCTACC+TGG | - | chr1_4:64322717-64322736 | None:intergenic | 35.0% | |
| GAAATTAGAGAGATCTGTGA+AGG | - | chr1_4:64322732-64322751 | None:intergenic | 35.0% | |
| !! | TGCTAGATCGATTGACTTTT+AGG | + | chr1_4:64322803-64322822 | Msa0177360:intron | 35.0% |
| GTACCTTTGTAATGATGTTG+GGG | + | chr1_4:64323018-64323037 | Msa0177360:intron | 35.0% | |
| TTTCCCCAACATCATTACAA+AGG | - | chr1_4:64323024-64323043 | None:intergenic | 35.0% | |
| TTGTAATGATGTTGGGGAAA+TGG | + | chr1_4:64323024-64323043 | Msa0177360:intron | 35.0% | |
| ATACCAACACTTCTGTTTGA+AGG | + | chr1_4:64323248-64323267 | Msa0177360:intron | 35.0% | |
| !! | TTAGAGCATGACTTGTTTGA+TGG | + | chr1_4:64323596-64323615 | Msa0177360:intron | 35.0% |
| TCATGCACTTTCTCTTCTTT+AGG | + | chr1_4:64323645-64323664 | Msa0177360:intron | 35.0% | |
| CATGCACTTTCTCTTCTTTA+GGG | + | chr1_4:64323646-64323665 | Msa0177360:intron | 35.0% | |
| ATGCACTTTCTCTTCTTTAG+GGG | + | chr1_4:64323647-64323666 | Msa0177360:intron | 35.0% | |
| GATCCGATTCTTGTATTCAA+TGG | + | chr1_4:64323704-64323723 | Msa0177360:intron | 35.0% | |
| TAATTCACAAAAGCCATCCT+CGG | + | chr1_4:64323760-64323779 | Msa0177360:intron | 35.0% | |
| ACCAAAAAAACTGAACTGTC+CGG | + | chr1_4:64323803-64323822 | Msa0177360:intron | 35.0% | |
| TGAGATGTCAATTGTGCTAA+GGG | - | chr1_4:64324058-64324077 | None:intergenic | 35.0% | |
| ATGAGATGTCAATTGTGCTA+AGG | - | chr1_4:64324059-64324078 | None:intergenic | 35.0% | |
| CTAAGCAAAACTGCAACTAA+TGG | - | chr1_4:64324632-64324651 | None:intergenic | 35.0% | |
| TACTTTGGTCCAGTAAACTA+TGG | - | chr1_4:64324683-64324702 | None:intergenic | 35.0% | |
| GTTATAGGAAACGTTGTCAT+GGG | - | chr1_4:64325023-64325042 | None:intergenic | 35.0% | |
| AGTTATAGGAAACGTTGTCA+TGG | - | chr1_4:64325024-64325043 | None:intergenic | 35.0% | |
| !!! | GGTTTTATTCCCATGTGAAT+AGG | - | chr1_4:64325075-64325094 | None:intergenic | 35.0% |
| ATTCACATGGGAATAAAACC+TGG | + | chr1_4:64325075-64325094 | Msa0177360:intron | 35.0% | |
| ! | GTAAAATTTGAATGGCGGAA+TGG | - | chr1_4:64325342-64325361 | None:intergenic | 35.0% |
| TGATGTTATGCTTCTTCTGT+AGG | + | chr1_4:64325381-64325400 | Msa0177360:intron | 35.0% | |
| TTACTGTGTCAACAAACTTG+GGG | - | chr1_4:64325416-64325435 | None:intergenic | 35.0% | |
| GTTACTGTGTCAACAAACTT+GGG | - | chr1_4:64325417-64325436 | None:intergenic | 35.0% | |
| AGTTACTGTGTCAACAAACT+TGG | - | chr1_4:64325418-64325437 | None:intergenic | 35.0% | |
| TAAGCCTAAATTTGATGCAC+TGG | + | chr1_4:64325446-64325465 | Msa0177360:CDS | 35.0% | |
| CTTACCAGTGCATCAAATTT+AGG | - | chr1_4:64325453-64325472 | None:intergenic | 35.0% | |
| ! | ATGTGTTTTCTTGCTGAAGT+TGG | + | chr1_4:64325538-64325557 | Msa0177360:intron | 35.0% |
| TCTGAAAGAATCTGAACGTT+TGG | + | chr1_4:64325589-64325608 | Msa0177360:CDS | 35.0% | |
| AGAATCTGAACGTTTGGAAA+AGG | + | chr1_4:64325595-64325614 | Msa0177360:CDS | 35.0% | |
| AGGTAATAGAAATCACCACA+TGG | + | chr1_4:64325642-64325661 | Msa0177360:intron | 35.0% | |
| CATAAAACTGAGAAACCATG+TGG | - | chr1_4:64325660-64325679 | None:intergenic | 35.0% | |
| AGCAATTTGATGAGGAGATT+AGG | + | chr1_4:64325781-64325800 | Msa0177360:CDS | 35.0% | |
| ! | ATGTGGAGAACCTTTTAAAC+TGG | - | chr1_4:64325922-64325941 | None:intergenic | 35.0% |
| ! | TTTTGACAACTGCAGAAATG+TGG | - | chr1_4:64325939-64325958 | None:intergenic | 35.0% |
| !! | TCAGGAAAATGTTTTTGTGG+CGG | + | chr1_4:64326024-64326043 | Msa0177360:three_prime_UTR | 35.0% |
| ATTTGTTCTGATTCTGGCAA+TGG | + | chr1_4:64326083-64326102 | Msa0177360:three_prime_UTR | 35.0% | |
| AAAGCGAAAGCGAAAATGAG+CGG | + | chr1_4:64322532-64322551 | Msa0177360:exon | 40.0% | |
| ACAGATGTTGCATTCAAAGC+CGG | + | chr1_4:64322571-64322590 | Msa0177360:CDS | 40.0% | |
| AAATTCACGACGAGCTTCAT+CGG | - | chr1_4:64322638-64322657 | None:intergenic | 40.0% | |
| TATTCAGTTACGAGGCTTAG+AGG | + | chr1_4:64323169-64323188 | Msa0177360:intron | 40.0% | |
| ! | AAGCCTTCAAACAGAAGTGT+TGG | - | chr1_4:64323254-64323273 | None:intergenic | 40.0% |
| TCAGACACACTAACAAGTGT+CGG | - | chr1_4:64323286-64323305 | None:intergenic | 40.0% | |
| AAAAGGAATTGGCACTCGTT+TGG | + | chr1_4:64323469-64323488 | Msa0177360:CDS | 40.0% | |
| ! | TCTCTTCTTTAGGGGTAAAG+TGG | + | chr1_4:64323655-64323674 | Msa0177360:intron | 40.0% |
| TTTAGGGGTAAAGTGGTAGA+AGG | + | chr1_4:64323662-64323681 | Msa0177360:intron | 40.0% | |
| AAAAGCCATCCTCGGAAATT+AGG | + | chr1_4:64323768-64323787 | Msa0177360:intron | 40.0% | |
| AAAGCCATCCTCGGAAATTA+GGG | + | chr1_4:64323769-64323788 | Msa0177360:intron | 40.0% | |
| ATGAACAACCCTAATTTCCG+AGG | - | chr1_4:64323780-64323799 | None:intergenic | 40.0% | |
| !!! | TCCGGACAGTTCAGTTTTTT+TGG | - | chr1_4:64323807-64323826 | None:intergenic | 40.0% |
| ! | TTTTGTGTGAACTGAACTGC+TGG | + | chr1_4:64323870-64323889 | Msa0177360:intron | 40.0% |
| TCATTCGCAAAACGTGATGA+TGG | + | chr1_4:64324563-64324582 | Msa0177360:intron | 40.0% | |
| CATTCGCAAAACGTGATGAT+GGG | + | chr1_4:64324564-64324583 | Msa0177360:intron | 40.0% | |
| ! | ATTCGCAAAACGTGATGATG+GGG | + | chr1_4:64324565-64324584 | Msa0177360:intron | 40.0% |
| ACTGGACCAAAGTACAAGTT+CGG | + | chr1_4:64324689-64324708 | Msa0177360:intron | 40.0% | |
| !! | AATTTCAGATAGGGGTGTTC+GGG | - | chr1_4:64324810-64324829 | None:intergenic | 40.0% |
| !! | CAATTTCAGATAGGGGTGTT+CGG | - | chr1_4:64324811-64324830 | None:intergenic | 40.0% |
| AGACATTCTTTCGTTGTGTC+TGG | + | chr1_4:64324833-64324852 | Msa0177360:intron | 40.0% | |
| ! | TGCTTTTGCATTGCAGAACA+CGG | - | chr1_4:64325139-64325158 | None:intergenic | 40.0% |
| CATACATAGTGAGAGAGATG+AGG | + | chr1_4:64325304-64325323 | Msa0177360:intron | 40.0% | |
| ! | AAAGTACTCATCTGCTGTCA+TGG | - | chr1_4:64325739-64325758 | None:intergenic | 40.0% |
| TCAAATTGCTTCTTCAGCTC+AGG | - | chr1_4:64325771-64325790 | None:intergenic | 40.0% | |
| GCTGAAGAAGCAATTTGATG+AGG | + | chr1_4:64325773-64325792 | Msa0177360:CDS | 40.0% | |
| AGGAGATTAGGAACGATAAC+TGG | + | chr1_4:64325793-64325812 | Msa0177360:CDS | 40.0% | |
| GGAGATTAGGAACGATAACT+GGG | + | chr1_4:64325794-64325813 | Msa0177360:CDS | 40.0% | |
| GAGATTAGGAACGATAACTG+GGG | + | chr1_4:64325795-64325814 | Msa0177360:CDS | 40.0% | |
| GCAAGGAAAACATCAACTTC+AGG | - | chr1_4:64325850-64325869 | None:intergenic | 40.0% | |
| !!! | GAAGTTGATGTTTTCCTTGC+TGG | + | chr1_4:64325850-64325869 | Msa0177360:exon | 40.0% |
| CAGATGTTGCATTCAAAGCC+GGG | + | chr1_4:64322572-64322591 | Msa0177360:CDS | 45.0% | |
| ACTCGAAACAAAGTTCAGCC+AGG | + | chr1_4:64322696-64322715 | Msa0177360:CDS | 45.0% | |
| !! | CACTAACAAGTGTCGGACAT+CGG | - | chr1_4:64323279-64323298 | None:intergenic | 45.0% |
| !! | ATTACCGGTGTTGATGTGTC+AGG | + | chr1_4:64323352-64323371 | Msa0177360:intron | 45.0% |
| ACAACCCTAATTTCCGAGGA+TGG | - | chr1_4:64323776-64323795 | None:intergenic | 45.0% | |
| !! | TTTTAAGGATCGGGGCAGTT+GGG | - | chr1_4:64323833-64323852 | None:intergenic | 45.0% |
| !! | TTTTTAAGGATCGGGGCAGT+TGG | - | chr1_4:64323834-64323853 | None:intergenic | 45.0% |
| AGAGAGAGCTGACAACAGTT+TGG | - | chr1_4:64323957-64323976 | None:intergenic | 45.0% | |
| ACGGATCCGAACTTGTACTT+TGG | - | chr1_4:64324698-64324717 | None:intergenic | 45.0% | |
| !! | ATTTCAGATAGGGGTGTTCG+GGG | - | chr1_4:64324809-64324828 | None:intergenic | 45.0% |
| ! | GCTGAAGTTGGTTGAGCTTA+AGG | + | chr1_4:64325550-64325569 | Msa0177360:intron | 45.0% |
| TGCTAATGTACAGTCGCTGA+AGG | + | chr1_4:64325622-64325641 | Msa0177360:CDS | 45.0% | |
| CAGTCAAGACACCCAATTTC+AGG | + | chr1_4:64326006-64326025 | Msa0177360:three_prime_UTR | 45.0% | |
| !! | ATAAAAAAATACTAATATAA+GGG | - | chr1_4:64323550-64323569 | None:intergenic | 5.0% |
| !! | AATAAAAAAATACTAATATA+AGG | - | chr1_4:64323551-64323570 | None:intergenic | 5.0% |
| AAGCCGGGAAGAAGATCGAT+TGG | + | chr1_4:64322587-64322606 | Msa0177360:CDS | 50.0% | |
| AGCCGGGAAGAAGATCGATT+GGG | + | chr1_4:64322588-64322607 | Msa0177360:CDS | 50.0% | |
| GTCCCAATCGATCTTCTTCC+CGG | - | chr1_4:64322593-64322612 | None:intergenic | 50.0% | |
| GGGAAGAAGATCGATTGGGA+CGG | + | chr1_4:64322592-64322611 | Msa0177360:CDS | 50.0% | |
| GGAAGAAGATCGATTGGGAC+GGG | + | chr1_4:64322593-64322612 | Msa0177360:CDS | 50.0% | |
| GACACCTGACACATCAACAC+CGG | - | chr1_4:64323359-64323378 | None:intergenic | 50.0% | |
| TATTCCCAGTCTATGGGCTC+AGG | - | chr1_4:64323443-64323462 | None:intergenic | 50.0% | |
| AGGAATTGGCACTCGTTTGG+TGG | + | chr1_4:64323472-64323491 | Msa0177360:CDS | 50.0% | |
| !! | AAACGTGATGATGGGGTGGA+AGG | + | chr1_4:64324572-64324591 | Msa0177360:intron | 50.0% |
| GGTTGAGCTTAAGGAAGCAG+AGG | + | chr1_4:64325559-64325578 | Msa0177360:CDS | 50.0% | |
| CTTCTTCAGCTCAGGATGCT+CGG | - | chr1_4:64325763-64325782 | None:intergenic | 50.0% | |
| GAAGATCGATTGGGACGGGA+TGG | + | chr1_4:64322597-64322616 | Msa0177360:CDS | 55.0% | |
| !! | CGCAAAACGTGATGATGGGG+TGG | + | chr1_4:64324568-64324587 | Msa0177360:intron | 55.0% |
| !! | AGATAGGGGTGTTCGGGGTT+GGG | - | chr1_4:64324804-64324823 | None:intergenic | 55.0% |
| AGGAGCCTGAGCCCATAGAC+TGG | + | chr1_4:64323435-64323454 | Msa0177360:intron | 60.0% | |
| GGAGCCTGAGCCCATAGACT+GGG | + | chr1_4:64323436-64323455 | Msa0177360:intron | 60.0% | |
| ATCGGGGCAGTTGGGTTCTC+CGG | - | chr1_4:64323825-64323844 | None:intergenic | 60.0% | |
| !! | CAGATAGGGGTGTTCGGGGT+TGG | - | chr1_4:64324805-64324824 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 64322458 | 64326165 | 64322458 | ID=Msa0177360;Name=Msa0177360 |
| chr1_4 | mRNA | 64322458 | 64326165 | 64322458 | ID=Msa0177360-mRNA-1;Parent=Msa0177360;Name=Msa0177360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89|1|1|1|1|1|5|314|177 |
| chr1_4 | exon | 64322458 | 64322717 | 64322458 | ID=Msa0177360-mRNA-1:exon:20892;Parent=Msa0177360-mRNA-1 |
| chr1_4 | exon | 64323437 | 64323518 | 64323437 | ID=Msa0177360-mRNA-1:exon:20893;Parent=Msa0177360-mRNA-1 |
| chr1_4 | exon | 64325403 | 64325467 | 64325403 | ID=Msa0177360-mRNA-1:exon:20894;Parent=Msa0177360-mRNA-1 |
| chr1_4 | exon | 64325557 | 64325643 | 64325557 | ID=Msa0177360-mRNA-1:exon:20895;Parent=Msa0177360-mRNA-1 |
| chr1_4 | exon | 64325723 | 64326165 | 64325723 | ID=Msa0177360-mRNA-1:exon:20896;Parent=Msa0177360-mRNA-1 |
| chr1_4 | five_prime_UTR | 64322458 | 64322546 | 64322458 | ID=Msa0177360-mRNA-1:five_prime_utr;Parent=Msa0177360-mRNA-1 |
| chr1_4 | CDS | 64322547 | 64322717 | 64322547 | ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1 |
| chr1_4 | CDS | 64323437 | 64323518 | 64323437 | ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1 |
| chr1_4 | CDS | 64325403 | 64325467 | 64325403 | ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1 |
| chr1_4 | CDS | 64325557 | 64325643 | 64325557 | ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1 |
| chr1_4 | CDS | 64325723 | 64325851 | 64325723 | ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1 |
| chr1_4 | three_prime_UTR | 64325852 | 64326165 | 64325852 | ID=Msa0177360-mRNA-1:three_prime_utr;Parent=Msa0177360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
