AlfalfaGEDB | Msa0177360

M. sativa cultivar zhongmu-4 / Msa0177360

KEGG: K02138
GO: GO:0000274 GO:0000276 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0022626 GO:0031090 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0033177 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0042788 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045263 GO:0045265 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0055086 GO:0070013 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1990904
PFAM: PF05873.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177360	sp\|Q9FT52\|ATP5H_ARATH	80.952	168	32	0	1	168	1	168	3.24e-100	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177360	G7I9M9	97.740	177	4	0	1	177	1	177	1.79e-124	357

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0037410	Msa0177360	0.810933	9.008435e-51	-8.615850e-47
Msa0069440	Msa0177360	0.973819	4.435610e-137	-8.615850e-47
Msa0097600	Msa0177360	0.806140	9.507136e-50	-8.615850e-47
Msa0131490	Msa0177360	0.942502	6.412517e-102	-8.615850e-47
Msa0131560	Msa0177360	0.967899	6.437495e-128	-8.615850e-47
Msa0174770	Msa0177360	0.808284	3.339613e-50	-8.615850e-47
Msa0177360	Msa0178120	0.807404	5.138985e-50	-8.615850e-47
Msa0177360	Msa0181610	0.810354	1.201710e-50	-8.615850e-47
Msa0177360	Msa0221030	0.834195	3.449630e-56	-8.615850e-47
Msa0177360	Msa0225150	0.807704	4.437733e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177360	MtrunA17_Chr1g0200191	97.740	177	4	0	1	177	1	177	3.45e-128	357

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0177360	AT3G52300.1	80.952	168	32	0	1	168	1	168	3.29e-101	288
Msa0177360	AT3G52300.2	78.704	108	23	0	1	108	1	108	8.71e-62	187

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Find 49 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAATTGGCACTCGTT+TGG	0.433018	1_4:+64323469	Msa0177360:CDS
AAACTATCAAAGGTCACACA+AGG	0.675809	1_4:+64326144	Msa0177360:three_prime_UTR
AAAGCGAAAGCGAAAATGAG+CGG	0.621372	1_4:+64322532	Msa0177360:exon
AAAGTACTCATCTGCTGTCA+TGG	0.536378	1_4:-64325736	None:intergenic
AAATTCACGACGAGCTTCAT+CGG	0.482178	1_4:-64322635	None:intergenic
AAGCCGGGAAGAAGATCGAT+TGG	0.530458	1_4:+64322587	Msa0177360:CDS
AATAAATTGTTGTGTTTGTC+TGG	0.357169	1_4:+64326051	Msa0177360:three_prime_UTR
ACAGATGTTGCATTCAAAGC+CGG	0.489390	1_4:+64322571	Msa0177360:CDS
ACGATAGTGTCAAGGTGCGA+AGG	0.595692	1_4:+64322454	None:intergenic
ACTCGAAACAAAGTTCAGCC+AGG	0.598938	1_4:+64322696	Msa0177360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCATCTAAGAACAAAATGA+AGG	-	chr1_4:64322787-64322806	None:intergenic	30.0%
TTGTACCTTTGTAATGATGT+TGG	+	chr1_4:64323016-64323035	Msa0177360:intron	30.0%
TGTACCTTTGTAATGATGTT+GGG	+	chr1_4:64323017-64323036	Msa0177360:intron	30.0%
AGATTATGTATTCAGTTACG+AGG	+	chr1_4:64323161-64323180	Msa0177360:intron	30.0%
CTATAATATTCCCAGTCTAT+GGG	-	chr1_4:64323449-64323468	None:intergenic	30.0%
TCTATAATATTCCCAGTCTA+TGG	-	chr1_4:64323450-64323469	None:intergenic	30.0%
GACTGGGAATATTATAGAAA+AGG	+	chr1_4:64323452-64323471	Msa0177360:CDS	30.0%
GTACCATTGAATACAAGAAT+CGG	-	chr1_4:64323710-64323729	None:intergenic	30.0%
TCTTCCCTATGAAAAGAATA+TGG	-	chr1_4:64323732-64323751	None:intergenic	30.0%
CGAATGAGACAAAAAGATAT+TGG	-	chr1_4:64324550-64324569	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	64322458	64326165	64322458	ID=Msa0177360;Name=Msa0177360
chr1_4	mRNA	64322458	64326165	64322458	ID=Msa0177360-mRNA-1;Parent=Msa0177360;Name=Msa0177360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=89\|1\|1\|1\|1\|1\|5\|314\|177
chr1_4	exon	64322458	64322717	64322458	ID=Msa0177360-mRNA-1:exon:20892;Parent=Msa0177360-mRNA-1
chr1_4	exon	64323437	64323518	64323437	ID=Msa0177360-mRNA-1:exon:20893;Parent=Msa0177360-mRNA-1
chr1_4	exon	64325403	64325467	64325403	ID=Msa0177360-mRNA-1:exon:20894;Parent=Msa0177360-mRNA-1
chr1_4	exon	64325557	64325643	64325557	ID=Msa0177360-mRNA-1:exon:20895;Parent=Msa0177360-mRNA-1
chr1_4	exon	64325723	64326165	64325723	ID=Msa0177360-mRNA-1:exon:20896;Parent=Msa0177360-mRNA-1
chr1_4	five_prime_UTR	64322458	64322546	64322458	ID=Msa0177360-mRNA-1:five_prime_utr;Parent=Msa0177360-mRNA-1
chr1_4	CDS	64322547	64322717	64322547	ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1
chr1_4	CDS	64323437	64323518	64323437	ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1
chr1_4	CDS	64325403	64325467	64325403	ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1
chr1_4	CDS	64325557	64325643	64325557	ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1
chr1_4	CDS	64325723	64325851	64325723	ID=Msa0177360-mRNA-1:cds;Parent=Msa0177360-mRNA-1
chr1_4	three_prime_UTR	64325852	64326165	64325852	ID=Msa0177360-mRNA-1:three_prime_utr;Parent=Msa0177360-mRNA-1

Gene Sequence

>Msa0177360

ATGAGCGGAACAGTGAAAAAAGTTACAGATGTTGCATTCAAAGCCGGGAAGAAGATCGATTGGGACGGGATGGCTAAGCTTCTCGTCACCGATGAAGCTCGTCGTGAATTTTTCAATCTTCGTCGCGCTTTCGACGAAGTTAACACTCAACTCGAAACAAAGTTCAGCCAGGAGCCTGAGCCCATAGACTGGGAATATTATAGAAAAGGAATTGGCACTCGTTTGGTGGATATGTACAAGCAGCATTATGAGAGCATTGAGATCCCCAAGTTTGTTGACACAGTAACTCCTCAATATAAGCCTAAATTTGATGCACTGTTGGTTGAGCTTAAGGAAGCAGAGGAGAAATCTCTGAAAGAATCTGAACGTTTGGAAAAGGAAATTGCTAATGTACAGTCGCTGAAGAAAAGGATTTCTACCATGACAGCAGATGAGTACTTTGCCGAGCATCCTGAGCTGAAGAAGCAATTTGATGAGGAGATTAGGAACGATAACTGGGGCTATTCACACTACAAAACTGAGCAAAACGCCTGA

Protein sequence

>Msa0177360

MSGTVKKVTDVAFKAGKKIDWDGMAKLLVTDEARREFFNLRRAFDEVNTQLETKFSQEPEPIDWEYYRKGIGTRLVDMYKQHYESIEIPKFVDTVTPQYKPKFDALLVELKEAEEKSLKESERLEKEIANVQSLKKRISTMTADEYFAEHPELKKQFDEEIRNDNWGYSHYKTEQNA*