AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1442850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442850 MtrunA17_Chr8g0381271 100.000 64 0 0 1 64 1 64 4.47e-42 130
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1442850 AT1G67785.1 77.419 62 13 1 1 62 1 61 2.32e-30 101

Find 63 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTGTTCCAACAATTAT+TGG 0.198021 tig0030213:-48646 None:intergenic
TTTGTCTGTGTATTGGTATT+TGG 0.264190 tig0030213:+48682 Msa1442850:three_prime_UTR
CATGATATTGCTCCCTAAAA+TGG 0.275849 tig0030213:+48617 Msa1442850:three_prime_UTR
CAAAGGAAAATAAAGTTTCT+TGG 0.284054 tig0030213:-48755 None:intergenic
TCATATGCTCAAATAAAATA+TGG 0.321339 tig0030213:+48533 Msa1442850:three_prime_UTR
GATACATTTGCCTGCTTGTT+GGG 0.334856 tig0030213:+48949 Msa1442850:three_prime_UTR
GGGTCAGAGAACAATTAATT+CGG 0.374447 tig0030213:+48411 Msa1442850:CDS
TGCAGAATAAAGATTCAAAA+TGG 0.377318 tig0030213:+47921 Msa1442850:exon
GAATTTAAGTCTACATTTGT+GGG 0.398198 tig0030213:+48832 Msa1442850:three_prime_UTR
ACATTTGTGGGCTATTGATC+TGG 0.411130 tig0030213:+48844 Msa1442850:three_prime_UTR
GTTTCCCTATGTTATATTGA+CGG 0.422674 tig0030213:+49048 Msa1442850:three_prime_UTR
CGCTCTTCATCAGGACGAAA+AGG 0.423832 tig0030213:+48023 Msa1442850:CDS
GGAATTTAAGTCTACATTTG+TGG 0.424860 tig0030213:+48831 Msa1442850:three_prime_UTR
GTGAAGGTTGCAACGTACTT+TGG 0.431142 tig0030213:+47943 Msa1442850:CDS
CCATGGACAAAGTCCATGTC+TGG 0.443394 tig0030213:+47998 Msa1442850:CDS
GATCATGTTGTGGAAGTTGC+TGG 0.450125 tig0030213:+48810 Msa1442850:three_prime_UTR
TGTCTGGATCGCTCTTCATC+AGG 0.451814 tig0030213:+48014 Msa1442850:CDS
AGATACATTTGCCTGCTTGT+TGG 0.455588 tig0030213:+48948 Msa1442850:three_prime_UTR
CTGTGTATTGGTATTTGGCT+CGG 0.458423 tig0030213:+48687 Msa1442850:three_prime_UTR
TTGATCCGTCAATATAACAT+AGG 0.459663 tig0030213:-49053 None:intergenic
CACGATAAAGAGATGGAAGA+AGG 0.461385 tig0030213:-49012 None:intergenic
ATAACATAGGGAAACTATGT+AGG 0.462278 tig0030213:-49040 None:intergenic
GGTCAGAGAACAATTAATTC+GGG 0.478951 tig0030213:+48412 Msa1442850:CDS
TGGTACTTGCCAATAATTGT+TGG 0.479210 tig0030213:+48637 Msa1442850:three_prime_UTR
ACTTCTTCGTTGAGATGAGA+TGG 0.481225 tig0030213:-47847 None:intergenic
TACTCAAAGGAAATGACAAC+AGG 0.482928 tig0030213:-48887 None:intergenic
TGATCCGTCAATATAACATA+GGG 0.490282 tig0030213:-49052 None:intergenic
TCCACATCTCACACTTTCAA+AGG 0.490834 tig0030213:-48772 None:intergenic
GATGTGGAAGCCGACTTAGT+AGG 0.491463 tig0030213:+48787 Msa1442850:three_prime_UTR
AACGTACTTTGGAATGTCCT+TGG 0.500806 tig0030213:+47954 Msa1442850:CDS
ATGTGGAAGCCGACTTAGTA+GGG 0.504314 tig0030213:+48788 Msa1442850:three_prime_UTR
AGAAGGAAGCGGAGATCAGA+AGG 0.504547 tig0030213:+48390 Msa1442850:CDS
TGTGTATTGGTATTTGGCTC+GGG 0.505124 tig0030213:+48688 Msa1442850:three_prime_UTR
CCAGACATGGACTTTGTCCA+TGG 0.515687 tig0030213:-47998 None:intergenic
GCATTTCAAATTTAATTGAG+TGG 0.516067 tig0030213:+48566 Msa1442850:three_prime_UTR
TGGTCTATGTGAAATAATGA+TGG 0.527833 tig0030213:+47770 None:intergenic
TGTGTTGCAGCAAGAGAGGT+TGG 0.535566 tig0030213:+48367 Msa1442850:intron
TTCGTTGAGATGAGATGGGA+AGG 0.540040 tig0030213:-47842 None:intergenic
TAATTTGCTGCCCAACAAGC+AGG 0.540779 tig0030213:-48959 None:intergenic
AGAGAGGTTGGAGAAGGAAG+CGG 0.542879 tig0030213:+48379 Msa1442850:CDS
ATCTCATCTCAACGAAGAAG+TGG 0.550078 tig0030213:+47849 Msa1442850:five_prime_UTR
AAACTGAATCGAAGCAAAGA+AGG 0.560808 tig0030213:+47895 Msa1442850:five_prime_UTR
ACGATAAAGAGATGGAAGAA+GGG 0.561057 tig0030213:-49011 None:intergenic
CCAGAAAACGAATGCTGCCA+AGG 0.569490 tig0030213:-47971 None:intergenic
ATATGAAGAATCCTTCTGAC+TGG 0.574630 tig0030213:-48441 None:intergenic
CTTCTTCGTTGAGATGAGAT+GGG 0.578259 tig0030213:-47846 None:intergenic
AATATCATGTATAACATCAA+AGG 0.580442 tig0030213:-48603 None:intergenic
GAAAGCAAACATATACTCAA+AGG 0.581829 tig0030213:-48900 None:intergenic
TAACATAGGGAAACTATGTA+GGG 0.587795 tig0030213:-49039 None:intergenic
GGGTAATCACGATAAAGAGA+TGG 0.592035 tig0030213:-49019 None:intergenic
CAACATGATCCCTACTAAGT+CGG 0.595762 tig0030213:-48797 None:intergenic
ATAAAGATTCAAAATGGTGA+AGG 0.596896 tig0030213:+47927 Msa1442850:exon
GCAGCAAGAGAGGTTGGAGA+AGG 0.597767 tig0030213:+48373 Msa1442850:intron
GATGAAGAGCGATCCAGACA+TGG 0.613241 tig0030213:-48011 None:intergenic
ACTTAGTAGGGATCATGTTG+TGG 0.616365 tig0030213:+48800 Msa1442850:three_prime_UTR
TCGGGAGCAAGCCAGTCAGA+AGG 0.625525 tig0030213:+48430 Msa1442850:CDS
CAAGAGAAATTACAAAGCAG+AGG 0.631364 tig0030213:-48496 None:intergenic
GAAGGAAGCGGAGATCAGAA+GGG 0.632205 tig0030213:+48391 Msa1442850:CDS
TCCTTTGAAAGTGTGAGATG+TGG 0.637352 tig0030213:+48771 Msa1442850:three_prime_UTR
TCGTTGAGATGAGATGGGAA+GGG 0.656923 tig0030213:-47841 None:intergenic
GGTCTATGTGAAATAATGAT+GGG 0.659362 tig0030213:+47771 None:intergenic
GTAATGTGTTGCAGCAAGAG+AGG 0.669103 tig0030213:+48363 Msa1442850:intron
AGGATATGAAATATGCATCG+CGG 0.738003 tig0030213:-48867 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTGTGTTATTTAAT+TGG + tig0030213:48339-48358 Msa1442850:intron 10.0%
!!! AATATTTTGTGTTATTTAAT+TGG + tig0030213:48339-48358 Msa1442850:intron 10.0%
!! AGTGAAATTGAAATTGAATA+TGG - tig0030213:48125-48144 None:intergenic 20.0%
!! ATTAATTTCACTCATTTAAG+AGG + tig0030213:48162-48181 Msa1442850:intron 20.0%
!! TCATATGCTCAAATAAAATA+TGG + tig0030213:48533-48552 Msa1442850:three_prime_UTR 20.0%
!! AATATCATGTATAACATCAA+AGG - tig0030213:48606-48625 None:intergenic 20.0%
!! AGTGAAATTGAAATTGAATA+TGG - tig0030213:48125-48144 None:intergenic 20.0%
!! ATTAATTTCACTCATTTAAG+AGG + tig0030213:48162-48181 Msa1442850:intron 20.0%
!! TCATATGCTCAAATAAAATA+TGG + tig0030213:48533-48552 Msa1442850:three_prime_UTR 20.0%
!! AATATCATGTATAACATCAA+AGG - tig0030213:48606-48625 None:intergenic 20.0%
!! ATTGTGAAAAACACTTTTCT+CGG - tig0030213:47811-47830 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG + tig0030213:47921-47940 Msa1442850:exon 25.0%
! ATAAAGATTCAAAATGGTGA+AGG + tig0030213:47927-47946 Msa1442850:exon 25.0%
! AATATGGAAATTATCCGAAA+AGG - tig0030213:48109-48128 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG - tig0030213:48204-48223 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG - tig0030213:48205-48224 None:intergenic 25.0%
! GCATTTCAAATTTAATTGAG+TGG + tig0030213:48566-48585 Msa1442850:three_prime_UTR 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG - tig0030213:48758-48777 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG + tig0030213:48832-48851 Msa1442850:three_prime_UTR 25.0%
!! ATTGTGAAAAACACTTTTCT+CGG - tig0030213:47811-47830 None:intergenic 25.0%
! TGCAGAATAAAGATTCAAAA+TGG + tig0030213:47921-47940 Msa1442850:exon 25.0%
! ATAAAGATTCAAAATGGTGA+AGG + tig0030213:47927-47946 Msa1442850:exon 25.0%
! AATATGGAAATTATCCGAAA+AGG - tig0030213:48109-48128 None:intergenic 25.0%
! TCGTTATAAGATGAAATCTA+GGG - tig0030213:48204-48223 None:intergenic 25.0%
! TTCGTTATAAGATGAAATCT+AGG - tig0030213:48205-48224 None:intergenic 25.0%
! GCATTTCAAATTTAATTGAG+TGG + tig0030213:48566-48585 Msa1442850:three_prime_UTR 25.0%
! CAAAGGAAAATAAAGTTTCT+TGG - tig0030213:48758-48777 None:intergenic 25.0%
! GAATTTAAGTCTACATTTGT+GGG + tig0030213:48832-48851 Msa1442850:three_prime_UTR 25.0%
! TTGTGAAAAACACTTTTCTC+GGG - tig0030213:47810-47829 None:intergenic 30.0%
TGAAGATTTCGAAGAAGTAA+GGG - tig0030213:48056-48075 None:intergenic 30.0%
ATGAAGATTTCGAAGAAGTA+AGG - tig0030213:48057-48076 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG + tig0030213:48092-48111 Msa1442850:intron 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG + tig0030213:48268-48287 Msa1442850:intron 30.0%
! TATTGGCAAGTACCATTTTA+GGG - tig0030213:48632-48651 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG - tig0030213:48633-48652 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG - tig0030213:48649-48668 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG + tig0030213:48682-48701 Msa1442850:three_prime_UTR 30.0%
CCAAAAATAAGCAATGCAAA+CGG - tig0030213:48732-48751 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG + tig0030213:48831-48850 Msa1442850:three_prime_UTR 30.0%
GAAAGCAAACATATACTCAA+AGG - tig0030213:48903-48922 None:intergenic 30.0%
TAACATAGGGAAACTATGTA+GGG - tig0030213:49042-49061 None:intergenic 30.0%
ATAACATAGGGAAACTATGT+AGG - tig0030213:49043-49062 None:intergenic 30.0%
! TTGTGAAAAACACTTTTCTC+GGG - tig0030213:47810-47829 None:intergenic 30.0%
TGAAGATTTCGAAGAAGTAA+GGG - tig0030213:48056-48075 None:intergenic 30.0%
ATGAAGATTTCGAAGAAGTA+AGG - tig0030213:48057-48076 None:intergenic 30.0%
!!! CAATTCTTGCTATTCCTTTT+CGG + tig0030213:48092-48111 Msa1442850:intron 30.0%
! TGTGGTGAATTTGTTCTTTA+AGG + tig0030213:48268-48287 Msa1442850:intron 30.0%
! TATTGGCAAGTACCATTTTA+GGG - tig0030213:48632-48651 None:intergenic 30.0%
! TTATTGGCAAGTACCATTTT+AGG - tig0030213:48633-48652 None:intergenic 30.0%
AGCATTGTTCCAACAATTAT+TGG - tig0030213:48649-48668 None:intergenic 30.0%
! TTTGTCTGTGTATTGGTATT+TGG + tig0030213:48682-48701 Msa1442850:three_prime_UTR 30.0%
CCAAAAATAAGCAATGCAAA+CGG - tig0030213:48732-48751 None:intergenic 30.0%
GGAATTTAAGTCTACATTTG+TGG + tig0030213:48831-48850 Msa1442850:three_prime_UTR 30.0%
GAAAGCAAACATATACTCAA+AGG - tig0030213:48903-48922 None:intergenic 30.0%
TAACATAGGGAAACTATGTA+GGG - tig0030213:49042-49061 None:intergenic 30.0%
ATAACATAGGGAAACTATGT+AGG - tig0030213:49043-49062 None:intergenic 30.0%
AAACTGAATCGAAGCAAAGA+AGG + tig0030213:47895-47914 Msa1442850:five_prime_UTR 35.0%
GAAGATTTCGAAGAAGTAAG+GGG - tig0030213:48055-48074 None:intergenic 35.0%
TACTTATGTGTGCAATGTTG+AGG + tig0030213:48229-48248 Msa1442850:intron 35.0%
GGGTCAGAGAACAATTAATT+CGG + tig0030213:48411-48430 Msa1442850:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG + tig0030213:48412-48431 Msa1442850:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG - tig0030213:48444-48463 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG - tig0030213:48499-48518 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG + tig0030213:48617-48636 Msa1442850:three_prime_UTR 35.0%
TGGTACTTGCCAATAATTGT+TGG + tig0030213:48637-48656 Msa1442850:three_prime_UTR 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG + tig0030213:48729-48748 Msa1442850:three_prime_UTR 35.0%
AGGATATGAAATATGCATCG+CGG - tig0030213:48870-48889 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG - tig0030213:48890-48909 None:intergenic 35.0%
ACGATAAAGAGATGGAAGAA+GGG - tig0030213:49014-49033 None:intergenic 35.0%
AAACTGAATCGAAGCAAAGA+AGG + tig0030213:47895-47914 Msa1442850:five_prime_UTR 35.0%
GAAGATTTCGAAGAAGTAAG+GGG - tig0030213:48055-48074 None:intergenic 35.0%
TACTTATGTGTGCAATGTTG+AGG + tig0030213:48229-48248 Msa1442850:intron 35.0%
GGGTCAGAGAACAATTAATT+CGG + tig0030213:48411-48430 Msa1442850:CDS 35.0%
GGTCAGAGAACAATTAATTC+GGG + tig0030213:48412-48431 Msa1442850:CDS 35.0%
ATATGAAGAATCCTTCTGAC+TGG - tig0030213:48444-48463 None:intergenic 35.0%
CAAGAGAAATTACAAAGCAG+AGG - tig0030213:48499-48518 None:intergenic 35.0%
CATGATATTGCTCCCTAAAA+TGG + tig0030213:48617-48636 Msa1442850:three_prime_UTR 35.0%
TGGTACTTGCCAATAATTGT+TGG + tig0030213:48637-48656 Msa1442850:three_prime_UTR 35.0%
!! CCGTTTGCATTGCTTATTTT+TGG + tig0030213:48729-48748 Msa1442850:three_prime_UTR 35.0%
AGGATATGAAATATGCATCG+CGG - tig0030213:48870-48889 None:intergenic 35.0%
TACTCAAAGGAAATGACAAC+AGG - tig0030213:48890-48909 None:intergenic 35.0%
ACGATAAAGAGATGGAAGAA+GGG - tig0030213:49014-49033 None:intergenic 35.0%
! TTTTCTCGGGCTCAAACTTT+CGG - tig0030213:47797-47816 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG - tig0030213:47849-47868 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG - tig0030213:47850-47869 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG + tig0030213:47849-47868 Msa1442850:five_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG + tig0030213:47954-47973 Msa1442850:CDS 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG + tig0030213:47981-48000 Msa1442850:CDS 40.0%
! GGTAACTGAGTTATTGACTG+TGG + tig0030213:48250-48269 Msa1442850:intron 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG + tig0030213:48675-48694 Msa1442850:three_prime_UTR 40.0%
! CTGTGTATTGGTATTTGGCT+CGG + tig0030213:48687-48706 Msa1442850:three_prime_UTR 40.0%
! TGTGTATTGGTATTTGGCTC+GGG + tig0030213:48688-48707 Msa1442850:three_prime_UTR 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG + tig0030213:48771-48790 Msa1442850:three_prime_UTR 40.0%
TCCACATCTCACACTTTCAA+AGG - tig0030213:48775-48794 None:intergenic 40.0%
CAACATGATCCCTACTAAGT+CGG - tig0030213:48800-48819 None:intergenic 40.0%
ACTTAGTAGGGATCATGTTG+TGG + tig0030213:48800-48819 Msa1442850:three_prime_UTR 40.0%
! ACATTTGTGGGCTATTGATC+TGG + tig0030213:48844-48863 Msa1442850:three_prime_UTR 40.0%
AGATACATTTGCCTGCTTGT+TGG + tig0030213:48948-48967 Msa1442850:three_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG + tig0030213:48949-48968 Msa1442850:three_prime_UTR 40.0%
CACGATAAAGAGATGGAAGA+AGG - tig0030213:49015-49034 None:intergenic 40.0%
GGGTAATCACGATAAAGAGA+TGG - tig0030213:49022-49041 None:intergenic 40.0%
! TTTTCTCGGGCTCAAACTTT+CGG - tig0030213:47797-47816 None:intergenic 40.0%
CTTCTTCGTTGAGATGAGAT+GGG - tig0030213:47849-47868 None:intergenic 40.0%
ACTTCTTCGTTGAGATGAGA+TGG - tig0030213:47850-47869 None:intergenic 40.0%
ATCTCATCTCAACGAAGAAG+TGG + tig0030213:47849-47868 Msa1442850:five_prime_UTR 40.0%
!! AACGTACTTTGGAATGTCCT+TGG + tig0030213:47954-47973 Msa1442850:CDS 40.0%
!! ATTCGTTTTCTGGCAATCCA+TGG + tig0030213:47981-48000 Msa1442850:CDS 40.0%
! GGTAACTGAGTTATTGACTG+TGG + tig0030213:48250-48269 Msa1442850:intron 40.0%
! GCTCGATTTTGTCTGTGTAT+TGG + tig0030213:48675-48694 Msa1442850:three_prime_UTR 40.0%
! CTGTGTATTGGTATTTGGCT+CGG + tig0030213:48687-48706 Msa1442850:three_prime_UTR 40.0%
! TGTGTATTGGTATTTGGCTC+GGG + tig0030213:48688-48707 Msa1442850:three_prime_UTR 40.0%
! TCCTTTGAAAGTGTGAGATG+TGG + tig0030213:48771-48790 Msa1442850:three_prime_UTR 40.0%
TCCACATCTCACACTTTCAA+AGG - tig0030213:48775-48794 None:intergenic 40.0%
CAACATGATCCCTACTAAGT+CGG - tig0030213:48800-48819 None:intergenic 40.0%
ACTTAGTAGGGATCATGTTG+TGG + tig0030213:48800-48819 Msa1442850:three_prime_UTR 40.0%
! ACATTTGTGGGCTATTGATC+TGG + tig0030213:48844-48863 Msa1442850:three_prime_UTR 40.0%
AGATACATTTGCCTGCTTGT+TGG + tig0030213:48948-48967 Msa1442850:three_prime_UTR 40.0%
GATACATTTGCCTGCTTGTT+GGG + tig0030213:48949-48968 Msa1442850:three_prime_UTR 40.0%
CACGATAAAGAGATGGAAGA+AGG - tig0030213:49015-49034 None:intergenic 40.0%
GGGTAATCACGATAAAGAGA+TGG - tig0030213:49022-49041 None:intergenic 40.0%
TCGTTGAGATGAGATGGGAA+GGG - tig0030213:47844-47863 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG - tig0030213:47845-47864 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG + tig0030213:47943-47962 Msa1442850:CDS 45.0%
GTAATGTGTTGCAGCAAGAG+AGG + tig0030213:48363-48382 Msa1442850:intron 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG + tig0030213:48788-48807 Msa1442850:three_prime_UTR 45.0%
GATCATGTTGTGGAAGTTGC+TGG + tig0030213:48810-48829 Msa1442850:three_prime_UTR 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG - tig0030213:48962-48981 None:intergenic 45.0%
TCGTTGAGATGAGATGGGAA+GGG - tig0030213:47844-47863 None:intergenic 45.0%
TTCGTTGAGATGAGATGGGA+AGG - tig0030213:47845-47864 None:intergenic 45.0%
GTGAAGGTTGCAACGTACTT+TGG + tig0030213:47943-47962 Msa1442850:CDS 45.0%
GTAATGTGTTGCAGCAAGAG+AGG + tig0030213:48363-48382 Msa1442850:intron 45.0%
! ATGTGGAAGCCGACTTAGTA+GGG + tig0030213:48788-48807 Msa1442850:three_prime_UTR 45.0%
GATCATGTTGTGGAAGTTGC+TGG + tig0030213:48810-48829 Msa1442850:three_prime_UTR 45.0%
!! TAATTTGCTGCCCAACAAGC+AGG - tig0030213:48962-48981 None:intergenic 45.0%
CCAGAAAACGAATGCTGCCA+AGG - tig0030213:47974-47993 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG + tig0030213:47971-47990 Msa1442850:CDS 50.0%
CCAGACATGGACTTTGTCCA+TGG - tig0030213:48001-48020 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG + tig0030213:47998-48017 Msa1442850:CDS 50.0%
GATGAAGAGCGATCCAGACA+TGG - tig0030213:48014-48033 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG + tig0030213:48014-48033 Msa1442850:CDS 50.0%
CGCTCTTCATCAGGACGAAA+AGG + tig0030213:48023-48042 Msa1442850:CDS 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG + tig0030213:48367-48386 Msa1442850:intron 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG + tig0030213:48379-48398 Msa1442850:CDS 50.0%
AGAAGGAAGCGGAGATCAGA+AGG + tig0030213:48390-48409 Msa1442850:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG + tig0030213:48391-48410 Msa1442850:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG + tig0030213:48787-48806 Msa1442850:three_prime_UTR 50.0%
CCAGAAAACGAATGCTGCCA+AGG - tig0030213:47974-47993 None:intergenic 50.0%
! CCTTGGCAGCATTCGTTTTC+TGG + tig0030213:47971-47990 Msa1442850:CDS 50.0%
CCAGACATGGACTTTGTCCA+TGG - tig0030213:48001-48020 None:intergenic 50.0%
CCATGGACAAAGTCCATGTC+TGG + tig0030213:47998-48017 Msa1442850:CDS 50.0%
GATGAAGAGCGATCCAGACA+TGG - tig0030213:48014-48033 None:intergenic 50.0%
TGTCTGGATCGCTCTTCATC+AGG + tig0030213:48014-48033 Msa1442850:CDS 50.0%
CGCTCTTCATCAGGACGAAA+AGG + tig0030213:48023-48042 Msa1442850:CDS 50.0%
TGTGTTGCAGCAAGAGAGGT+TGG + tig0030213:48367-48386 Msa1442850:intron 50.0%
AGAGAGGTTGGAGAAGGAAG+CGG + tig0030213:48379-48398 Msa1442850:CDS 50.0%
AGAAGGAAGCGGAGATCAGA+AGG + tig0030213:48390-48409 Msa1442850:CDS 50.0%
GAAGGAAGCGGAGATCAGAA+GGG + tig0030213:48391-48410 Msa1442850:CDS 50.0%
! GATGTGGAAGCCGACTTAGT+AGG + tig0030213:48787-48806 Msa1442850:three_prime_UTR 50.0%
GCAGCAAGAGAGGTTGGAGA+AGG + tig0030213:48373-48392 Msa1442850:intron 55.0%
GCAGCAAGAGAGGTTGGAGA+AGG + tig0030213:48373-48392 Msa1442850:intron 55.0%
TCGGGAGCAAGCCAGTCAGA+AGG + tig0030213:48430-48449 Msa1442850:CDS 60.0%
TCGGGAGCAAGCCAGTCAGA+AGG + tig0030213:48430-48449 Msa1442850:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0030213 gene 47784 49068 47784 ID=Msa1442850;Name=Msa1442850
tig0030213 mRNA 47784 49068 47784 ID=Msa1442850-mRNA-1;Parent=Msa1442850;Name=Msa1442850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=156|1|1|1|1|1|2|602|64
tig0030213 exon 47784 48044 47784 ID=Msa1442850-mRNA-1:exon:13518;Parent=Msa1442850-mRNA-1
tig0030213 exon 48377 49068 48377 ID=Msa1442850-mRNA-1:exon:13519;Parent=Msa1442850-mRNA-1
tig0030213 five_prime_UTR 47784 47939 47784 ID=Msa1442850-mRNA-1:five_prime_utr;Parent=Msa1442850-mRNA-1
tig0030213 CDS 47940 48044 47940 ID=Msa1442850-mRNA-1:cds;Parent=Msa1442850-mRNA-1
tig0030213 CDS 48377 48466 48377 ID=Msa1442850-mRNA-1:cds;Parent=Msa1442850-mRNA-1
tig0030213 three_prime_UTR 48467 49068 48467 ID=Msa1442850-mRNA-1:three_prime_utr;Parent=Msa1442850-mRNA-1
Gene Sequence

>Msa1442850

ATGGTGAAGGTTGCAACGTACTTTGGAATGTCCTTGGCAGCATTCGTTTTCTGGCAATCCATGGACAAAGTCCATGTCTGGATCGCTCTTCATCAGGACGAAAAGCAAGAGAGGTTGGAGAAGGAAGCGGAGATCAGAAGGGTCAGAGAACAATTAATTCGGGAGCAAGCCAGTCAGAAGGATTCTTCATATTGA

Protein sequence

>Msa1442850

MVKVATYFGMSLAAFVFWQSMDKVHVWIALHQDEKQERLEKEAEIRRVREQLIREQASQKDSSY*