AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1184370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184370 MtrunA17_Chr8g0334441 100.000 64 0 0 1 64 1 64 1.31e-43 134
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1184370 AT3G08610.1 75.000 64 16 0 1 64 1 64 2.50e-33 108

Find 47 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATAAATCTTGGTATTTA+TGG 0.074576 8_1:-20012219 Msa1184370:three_prime_UTR
TAGGGTACCTGTTTGTTAAT+TGG 0.273208 8_1:+20013629 None:intergenic
CAGGGATTCATTTAAAATAA+AGG 0.278340 8_1:+20012152 None:intergenic
ACATAAATCTTGGTATTTAT+GGG 0.302254 8_1:-20012218 Msa1184370:three_prime_UTR
TGCTGGAATGCTTTGTGTTA+TGG 0.308874 8_1:-20013866 Msa1184370:CDS
AGCTAGGCTGGGCTTATATA+TGG 0.316757 8_1:-20014026 None:intergenic
GCTGGAATGCTTTGTGTTAT+GGG 0.333642 8_1:-20013865 Msa1184370:CDS
TTACCTTTGGGAATAATTGC+TGG 0.341296 8_1:-20013883 Msa1184370:CDS
GTTGGAAGCTATGTTACCTT+TGG 0.352532 8_1:-20013896 Msa1184370:CDS
AATCGATAATTTATGTAAGT+TGG 0.365119 8_1:-20012081 Msa1184370:three_prime_UTR
AAGGCAAGGATTGGGATTAC+AGG 0.380141 8_1:+20012171 None:intergenic
AAGAAAGAAAGAAAGAAAGA+AGG 0.384033 8_1:-20013951 Msa1184370:five_prime_UTR
TTTAAAATAAAGGCAAGGAT+TGG 0.393599 8_1:+20012162 None:intergenic
TTGTGCTTTGACATAAATCT+TGG 0.394534 8_1:-20012228 Msa1184370:three_prime_UTR
TTGGAAGCTATGTTACCTTT+GGG 0.406774 8_1:-20013895 Msa1184370:CDS
AGAAAGAAAGAAAGAAAGAA+GGG 0.406986 8_1:-20013950 Msa1184370:five_prime_UTR
CTCTGCTTCCATGGAACAGC+TGG 0.418718 8_1:+20012425 None:intergenic
ATCGATAATTTATGTAAGTT+GGG 0.419344 8_1:-20012080 Msa1184370:three_prime_UTR
TTAAAATAAAGGCAAGGATT+GGG 0.421257 8_1:+20012163 None:intergenic
TCTTCTTCCAATTAACAAAC+AGG 0.422157 8_1:-20013636 Msa1184370:intron
CTTCTTGTCCCTACGTTCCA+TGG 0.446698 8_1:+20013674 None:intergenic
TGCTTAGTGAAGGTGTGGAC+AGG 0.462427 8_1:+20012133 None:intergenic
AAATCATTGCCGATGTGCTT+AGG 0.473520 8_1:+20013708 None:intergenic
AGTGAGTCTTGAAGAAGGAG+AGG 0.485634 8_1:-20013996 Msa1184370:five_prime_UTR
AGCACATCGGCAATGATTTG+TGG 0.486432 8_1:-20013704 Msa1184370:CDS
AGAGATGGCGTTGCATTGGT+TGG 0.487344 8_1:-20013914 Msa1184370:exon
AAGTGAGTGAGTCTTGAAGA+AGG 0.499853 8_1:-20014001 Msa1184370:five_prime_UTR
GCACATCGGCAATGATTTGT+GGG 0.508503 8_1:-20013703 Msa1184370:CDS
AGAGAGAGATGGCGTTGCAT+TGG 0.509492 8_1:-20013918 Msa1184370:exon
AGCAATCTACTCTGCTTCCA+TGG 0.524941 8_1:+20012416 None:intergenic
CGGCAATGATTTGTGGGACG+TGG 0.531999 8_1:-20013697 Msa1184370:CDS
GTTGCTCTCCAGCTGTTCCA+TGG 0.544090 8_1:-20012433 Msa1184370:three_prime_UTR
TATGTATATTATAACGCTTA+CGG 0.553100 8_1:+20012355 None:intergenic
TGATTTGTGGGACGTGGCCA+TGG 0.553811 8_1:-20013691 Msa1184370:CDS
ATTCATTTAAAATAAAGGCA+AGG 0.569026 8_1:+20012157 None:intergenic
GGACGTGGCCATGGAACGTA+GGG 0.570234 8_1:-20013682 Msa1184370:CDS
GGAATTGAAGAAGAGAGAGA+TGG 0.582978 8_1:-20013929 Msa1184370:exon
ACATAAATTATCGATTGCCA+TGG 0.587402 8_1:+20012088 None:intergenic
ATTCCAGCAATTATTCCCAA+AGG 0.601922 8_1:+20013880 None:intergenic
GCTTAGTGAAGGTGTGGACA+GGG 0.615579 8_1:+20012134 None:intergenic
AGCACAAAATTGTACAAGAG+AGG 0.616768 8_1:-20012114 Msa1184370:three_prime_UTR
TGTGGTTAGCCTAAGCACAT+CGG 0.628887 8_1:-20013717 Msa1184370:intron
ATTTCATACAAGAAAACACA+TGG 0.631983 8_1:+20012381 None:intergenic
CTCGTCCGTGAGCAGCTCTG+TGG 0.632697 8_1:+20013824 None:intergenic
TACATCCACAGAGCTGCTCA+CGG 0.640107 8_1:-20013829 Msa1184370:CDS
GGGACGTGGCCATGGAACGT+AGG 0.664354 8_1:-20013683 Msa1184370:CDS
TTGTACAAGAGAGGACACCA+TGG 0.707418 8_1:-20012105 Msa1184370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAAAATTGAATTGAAT+TGG - chr8_1:20012346-20012365 Msa1184370:three_prime_UTR 10.0%
!! AAATTAAAATTGAATTGAAT+TGG - chr8_1:20012346-20012365 Msa1184370:three_prime_UTR 10.0%
!! AAAAGAAAGAAAGAAAAAAA+GGG + chr8_1:20012495-20012514 None:intergenic 15.0%
!! AAAAAGAAAGAAAGAAAAAA+AGG + chr8_1:20012496-20012515 None:intergenic 15.0%
!! AAAAGAAAGAAAGAAAAAAA+GGG + chr8_1:20012495-20012514 None:intergenic 15.0%
!! AAAAAGAAAGAAAGAAAAAA+AGG + chr8_1:20012496-20012515 None:intergenic 15.0%
!! AAAGAAAGAAAGAAAAAAAG+GGG + chr8_1:20012494-20012513 None:intergenic 20.0%
!!! TAAAACTTAATTTTCCTATC+AGG - chr8_1:20012607-20012626 Msa1184370:intron 20.0%
!! TTTAATTATTCTATCCTGAT+AGG + chr8_1:20012624-20012643 None:intergenic 20.0%
!! TTCTCATATAAATGCAAATA+AGG + chr8_1:20012843-20012862 None:intergenic 20.0%
!! CTCAAAATCTTAAAACTATT+TGG - chr8_1:20013056-20013075 Msa1184370:intron 20.0%
!!! TTTCTTTTTTCTCTCAATAA+AGG + chr8_1:20013427-20013446 None:intergenic 20.0%
!! TACATAAAGAAAATCAAATC+TGG + chr8_1:20013546-20013565 None:intergenic 20.0%
!! CTTTATGTATGAAATTATCA+AGG - chr8_1:20013557-20013576 Msa1184370:intron 20.0%
!! ATTTATATGTTTCCAAATGT+AGG - chr8_1:20013598-20013617 Msa1184370:intron 20.0%
!! TATGTATATTATAACGCTTA+CGG + chr8_1:20013743-20013762 None:intergenic 20.0%
!! ACATAAATCTTGGTATTTAT+GGG - chr8_1:20013877-20013896 Msa1184370:CDS 20.0%
!!! ATTCATTTAAAATAAAGGCA+AGG + chr8_1:20013941-20013960 None:intergenic 20.0%
!! AATCGATAATTTATGTAAGT+TGG - chr8_1:20014014-20014033 Msa1184370:five_prime_UTR 20.0%
!! ATCGATAATTTATGTAAGTT+GGG - chr8_1:20014015-20014034 Msa1184370:five_prime_UTR 20.0%
!! AAAGAAAGAAAGAAAAAAAG+GGG + chr8_1:20012494-20012513 None:intergenic 20.0%
!!! TAAAACTTAATTTTCCTATC+AGG - chr8_1:20012607-20012626 Msa1184370:intron 20.0%
!! TTTAATTATTCTATCCTGAT+AGG + chr8_1:20012624-20012643 None:intergenic 20.0%
!! TTCTCATATAAATGCAAATA+AGG + chr8_1:20012843-20012862 None:intergenic 20.0%
!! CTCAAAATCTTAAAACTATT+TGG - chr8_1:20013056-20013075 Msa1184370:intron 20.0%
!!! TTTCTTTTTTCTCTCAATAA+AGG + chr8_1:20013427-20013446 None:intergenic 20.0%
!! TACATAAAGAAAATCAAATC+TGG + chr8_1:20013546-20013565 None:intergenic 20.0%
!! CTTTATGTATGAAATTATCA+AGG - chr8_1:20013557-20013576 Msa1184370:intron 20.0%
!! ATTTATATGTTTCCAAATGT+AGG - chr8_1:20013598-20013617 Msa1184370:intron 20.0%
!! TATGTATATTATAACGCTTA+CGG + chr8_1:20013743-20013762 None:intergenic 20.0%
!! ACATAAATCTTGGTATTTAT+GGG - chr8_1:20013877-20013896 Msa1184370:CDS 20.0%
!!! ATTCATTTAAAATAAAGGCA+AGG + chr8_1:20013941-20013960 None:intergenic 20.0%
!! AATCGATAATTTATGTAAGT+TGG - chr8_1:20014014-20014033 Msa1184370:five_prime_UTR 20.0%
! AAGAAAGAAAGAAAGAAAGA+AGG - chr8_1:20012136-20012155 Msa1184370:three_prime_UTR 25.0%
! AGAAAGAAAGAAAGAAAGAA+GGG - chr8_1:20012133-20012152 Msa1184370:three_prime_UTR 25.0%
!!! TTGAATTGGATCTATTTTTG+TGG - chr8_1:20012360-20012379 Msa1184370:three_prime_UTR 25.0%
!!! CTTTTTTTCCCTATTATCAA+TGG - chr8_1:20012510-20012529 Msa1184370:intron 25.0%
!! AATCAGATCCATTGATAATA+GGG + chr8_1:20012521-20012540 None:intergenic 25.0%
! ATTCTCGTATGCTAATTTAT+TGG - chr8_1:20012647-20012666 Msa1184370:intron 25.0%
!!! TATGCTAATTTATTGGTTTG+TGG - chr8_1:20012654-20012673 Msa1184370:intron 25.0%
!!! ATAAAGCCCTTTTAAGTTTA+TGG - chr8_1:20012762-20012781 Msa1184370:intron 25.0%
!!! TAAAGCCCTTTTAAGTTTAT+GGG - chr8_1:20012763-20012782 Msa1184370:intron 25.0%
! TTGTACCCATAAACTTAAAA+GGG + chr8_1:20012771-20012790 None:intergenic 25.0%
! TTTGTACCCATAAACTTAAA+AGG + chr8_1:20012772-20012791 None:intergenic 25.0%
! AAATTATAGTGAAGTTAGAG+AGG - chr8_1:20012789-20012808 Msa1184370:intron 25.0%
! AATTATAGTGAAGTTAGAGA+GGG - chr8_1:20012790-20012809 Msa1184370:intron 25.0%
! AGAAATTACCTTCATTATGT+TGG + chr8_1:20013115-20013134 None:intergenic 25.0%
! CTATATGATAGATCAGATAA+TGG + chr8_1:20013221-20013240 None:intergenic 25.0%
! TTATCTGATCTATCATATAG+TGG - chr8_1:20013221-20013240 Msa1184370:intron 25.0%
! ATTTCATACAAGAAAACACA+TGG + chr8_1:20013717-20013736 None:intergenic 25.0%
!!! TGTTTTCTTTTAGTTGAACA+TGG - chr8_1:20013776-20013795 Msa1184370:intron 25.0%
! GACATAAATCTTGGTATTTA+TGG - chr8_1:20013876-20013895 Msa1184370:CDS 25.0%
! TTAAAATAAAGGCAAGGATT+GGG + chr8_1:20013935-20013954 None:intergenic 25.0%
!! TTTAAAATAAAGGCAAGGAT+TGG + chr8_1:20013936-20013955 None:intergenic 25.0%
!! CAGGGATTCATTTAAAATAA+AGG + chr8_1:20013946-20013965 None:intergenic 25.0%
! TCGATAATTTATGTAAGTTG+GGG - chr8_1:20014016-20014035 Msa1184370:five_prime_UTR 25.0%
! AAGAAAGAAAGAAAGAAAGA+AGG - chr8_1:20012136-20012155 Msa1184370:three_prime_UTR 25.0%
! AGAAAGAAAGAAAGAAAGAA+GGG - chr8_1:20012133-20012152 Msa1184370:three_prime_UTR 25.0%
!!! TTGAATTGGATCTATTTTTG+TGG - chr8_1:20012360-20012379 Msa1184370:three_prime_UTR 25.0%
!!! CTTTTTTTCCCTATTATCAA+TGG - chr8_1:20012510-20012529 Msa1184370:intron 25.0%
!! AATCAGATCCATTGATAATA+GGG + chr8_1:20012521-20012540 None:intergenic 25.0%
! ATTCTCGTATGCTAATTTAT+TGG - chr8_1:20012647-20012666 Msa1184370:intron 25.0%
!!! TATGCTAATTTATTGGTTTG+TGG - chr8_1:20012654-20012673 Msa1184370:intron 25.0%
!!! ATAAAGCCCTTTTAAGTTTA+TGG - chr8_1:20012762-20012781 Msa1184370:intron 25.0%
!!! TAAAGCCCTTTTAAGTTTAT+GGG - chr8_1:20012763-20012782 Msa1184370:intron 25.0%
! TTGTACCCATAAACTTAAAA+GGG + chr8_1:20012771-20012790 None:intergenic 25.0%
! TTTGTACCCATAAACTTAAA+AGG + chr8_1:20012772-20012791 None:intergenic 25.0%
! AAATTATAGTGAAGTTAGAG+AGG - chr8_1:20012789-20012808 Msa1184370:intron 25.0%
! AATTATAGTGAAGTTAGAGA+GGG - chr8_1:20012790-20012809 Msa1184370:intron 25.0%
! AGAAATTACCTTCATTATGT+TGG + chr8_1:20013115-20013134 None:intergenic 25.0%
! CTATATGATAGATCAGATAA+TGG + chr8_1:20013221-20013240 None:intergenic 25.0%
! TTATCTGATCTATCATATAG+TGG - chr8_1:20013221-20013240 Msa1184370:intron 25.0%
! ATTTCATACAAGAAAACACA+TGG + chr8_1:20013717-20013736 None:intergenic 25.0%
!!! TGTTTTCTTTTAGTTGAACA+TGG - chr8_1:20013776-20013795 Msa1184370:intron 25.0%
! GACATAAATCTTGGTATTTA+TGG - chr8_1:20013876-20013895 Msa1184370:CDS 25.0%
! TTAAAATAAAGGCAAGGATT+GGG + chr8_1:20013935-20013954 None:intergenic 25.0%
!! TTTAAAATAAAGGCAAGGAT+TGG + chr8_1:20013936-20013955 None:intergenic 25.0%
!! CAGGGATTCATTTAAAATAA+AGG + chr8_1:20013946-20013965 None:intergenic 25.0%
TCTTCTTCCAATTAACAAAC+AGG - chr8_1:20012459-20012478 Msa1184370:three_prime_UTR 30.0%
GAAAGAAAAAAAGGGGATTA+GGG + chr8_1:20012487-20012506 None:intergenic 30.0%
AGAAAGAAAAAAAGGGGATT+AGG + chr8_1:20012488-20012507 None:intergenic 30.0%
! CAATCAGATCCATTGATAAT+AGG + chr8_1:20012522-20012541 None:intergenic 30.0%
AATTGCAATTGCATCTGTAA+TGG + chr8_1:20012581-20012600 None:intergenic 30.0%
! TACAGATGCAATTGCAATTT+TGG - chr8_1:20012582-20012601 Msa1184370:intron 30.0%
! AAGTGTTAAGCTTAAGTTGT+TGG - chr8_1:20012684-20012703 Msa1184370:intron 30.0%
! AGTGTTAAGCTTAAGTTGTT+GGG - chr8_1:20012685-20012704 Msa1184370:intron 30.0%
TTCCAATATGTTTAGGCATA+GGG - chr8_1:20012817-20012836 Msa1184370:intron 30.0%
TGTAAGTGAGTGACTTAAAT+AGG + chr8_1:20012906-20012925 None:intergenic 30.0%
AATCTCAGCACAAAAACAAA+TGG + chr8_1:20012968-20012987 None:intergenic 30.0%
TTACACATCCAACATAATGA+AGG - chr8_1:20013104-20013123 Msa1184370:intron 30.0%
TGCAATATCTGCAATGATTT+GGG - chr8_1:20013145-20013164 Msa1184370:intron 30.0%
GTTGGATATTCTGAATCATA+GGG - chr8_1:20013294-20013313 Msa1184370:intron 30.0%
ATATTCTGAATCATAGGGAT+TGG - chr8_1:20013299-20013318 Msa1184370:intron 30.0%
! TCTCCTTGATATTCTTCTTT+TGG - chr8_1:20013331-20013350 Msa1184370:intron 30.0%
TGACCAAAAGAAGAATATCA+AGG + chr8_1:20013337-20013356 None:intergenic 30.0%
CAGATAAAACAACCTACATT+TGG + chr8_1:20013613-20013632 None:intergenic 30.0%
TTGTGCTTTGACATAAATCT+TGG - chr8_1:20013867-20013886 Msa1184370:CDS 30.0%
! TACAATTTTGTGCTTAGTGA+AGG + chr8_1:20013975-20013994 None:intergenic 30.0%
! ACATAAATTATCGATTGCCA+TGG + chr8_1:20014010-20014029 None:intergenic 30.0%
TCTTCTTCCAATTAACAAAC+AGG - chr8_1:20012459-20012478 Msa1184370:three_prime_UTR 30.0%
GAAAGAAAAAAAGGGGATTA+GGG + chr8_1:20012487-20012506 None:intergenic 30.0%
AGAAAGAAAAAAAGGGGATT+AGG + chr8_1:20012488-20012507 None:intergenic 30.0%
! CAATCAGATCCATTGATAAT+AGG + chr8_1:20012522-20012541 None:intergenic 30.0%
AATTGCAATTGCATCTGTAA+TGG + chr8_1:20012581-20012600 None:intergenic 30.0%
! TACAGATGCAATTGCAATTT+TGG - chr8_1:20012582-20012601 Msa1184370:intron 30.0%
! AAGTGTTAAGCTTAAGTTGT+TGG - chr8_1:20012684-20012703 Msa1184370:intron 30.0%
! AGTGTTAAGCTTAAGTTGTT+GGG - chr8_1:20012685-20012704 Msa1184370:intron 30.0%
TTCCAATATGTTTAGGCATA+GGG - chr8_1:20012817-20012836 Msa1184370:intron 30.0%
TGTAAGTGAGTGACTTAAAT+AGG + chr8_1:20012906-20012925 None:intergenic 30.0%
AATCTCAGCACAAAAACAAA+TGG + chr8_1:20012968-20012987 None:intergenic 30.0%
TTACACATCCAACATAATGA+AGG - chr8_1:20013104-20013123 Msa1184370:intron 30.0%
TGCAATATCTGCAATGATTT+GGG - chr8_1:20013145-20013164 Msa1184370:intron 30.0%
GTTGGATATTCTGAATCATA+GGG - chr8_1:20013294-20013313 Msa1184370:intron 30.0%
ATATTCTGAATCATAGGGAT+TGG - chr8_1:20013299-20013318 Msa1184370:intron 30.0%
! TCTCCTTGATATTCTTCTTT+TGG - chr8_1:20013331-20013350 Msa1184370:intron 30.0%
TGACCAAAAGAAGAATATCA+AGG + chr8_1:20013337-20013356 None:intergenic 30.0%
CAGATAAAACAACCTACATT+TGG + chr8_1:20013613-20013632 None:intergenic 30.0%
TTGTGCTTTGACATAAATCT+TGG - chr8_1:20013867-20013886 Msa1184370:CDS 30.0%
! TACAATTTTGTGCTTAGTGA+AGG + chr8_1:20013975-20013994 None:intergenic 30.0%
! ACATAAATTATCGATTGCCA+TGG + chr8_1:20014010-20014029 None:intergenic 30.0%
TTGGAAGCTATGTTACCTTT+GGG - chr8_1:20012200-20012219 Msa1184370:three_prime_UTR 35.0%
! TTACCTTTGGGAATAATTGC+TGG - chr8_1:20012212-20012231 Msa1184370:three_prime_UTR 35.0%
ATTCCAGCAATTATTCCCAA+AGG + chr8_1:20012218-20012237 None:intergenic 35.0%
! TAGGGTACCTGTTTGTTAAT+TGG + chr8_1:20012469-20012488 None:intergenic 35.0%
TCTGATTGTCAACTCTATAG+CGG - chr8_1:20012534-20012553 Msa1184370:intron 35.0%
!! GCTAATTTATTGGTTTGTGG+AGG - chr8_1:20012657-20012676 Msa1184370:intron 35.0%
CTTCCAATATGTTTAGGCAT+AGG - chr8_1:20012816-20012835 Msa1184370:intron 35.0%
!!! GTGGTTTGTCATTTTTGCAA+TGG + chr8_1:20012884-20012903 None:intergenic 35.0%
AAGTGAGTGACTTAAATAGG+TGG + chr8_1:20012903-20012922 None:intergenic 35.0%
!! GATCCTTTGAGCTTTAAGTA+TGG - chr8_1:20012929-20012948 Msa1184370:intron 35.0%
TGTCCATACTTAAAGCTCAA+AGG + chr8_1:20012935-20012954 None:intergenic 35.0%
GTGCAATATCTGCAATGATT+TGG - chr8_1:20013144-20013163 Msa1184370:intron 35.0%
GCAATATCTGCAATGATTTG+GGG - chr8_1:20013146-20013165 Msa1184370:intron 35.0%
TGGTCTTTACCAACTTCTTT+AGG - chr8_1:20013241-20013260 Msa1184370:intron 35.0%
CATTAGCATCCTAAAGAAGT+TGG + chr8_1:20013253-20013272 None:intergenic 35.0%
!! CAACTTCTTTAGGATGCTAA+TGG - chr8_1:20013251-20013270 Msa1184370:intron 35.0%
GATGCTAATGGTTATTCAGA+GGG - chr8_1:20013263-20013282 Msa1184370:intron 35.0%
CGTTGGATATTCTGAATCAT+AGG - chr8_1:20013293-20013312 Msa1184370:intron 35.0%
! GATATTCTTCTTTTGGTCAG+TGG - chr8_1:20013338-20013357 Msa1184370:intron 35.0%
! TTTTGGTCAGTGGTTTCATT+AGG - chr8_1:20013348-20013367 Msa1184370:intron 35.0%
!! TTGCAATTTTGACGACTACA+AGG - chr8_1:20013451-20013470 Msa1184370:intron 35.0%
ACGACTACAAGGACAATATT+AGG - chr8_1:20013462-20013481 Msa1184370:intron 35.0%
AGCACAAAATTGTACAAGAG+AGG - chr8_1:20013981-20014000 Msa1184370:five_prime_UTR 35.0%
TTGGAAGCTATGTTACCTTT+GGG - chr8_1:20012200-20012219 Msa1184370:three_prime_UTR 35.0%
! TTACCTTTGGGAATAATTGC+TGG - chr8_1:20012212-20012231 Msa1184370:three_prime_UTR 35.0%
ATTCCAGCAATTATTCCCAA+AGG + chr8_1:20012218-20012237 None:intergenic 35.0%
! TAGGGTACCTGTTTGTTAAT+TGG + chr8_1:20012469-20012488 None:intergenic 35.0%
TCTGATTGTCAACTCTATAG+CGG - chr8_1:20012534-20012553 Msa1184370:intron 35.0%
!! GCTAATTTATTGGTTTGTGG+AGG - chr8_1:20012657-20012676 Msa1184370:intron 35.0%
CTTCCAATATGTTTAGGCAT+AGG - chr8_1:20012816-20012835 Msa1184370:intron 35.0%
!!! GTGGTTTGTCATTTTTGCAA+TGG + chr8_1:20012884-20012903 None:intergenic 35.0%
AAGTGAGTGACTTAAATAGG+TGG + chr8_1:20012903-20012922 None:intergenic 35.0%
!! GATCCTTTGAGCTTTAAGTA+TGG - chr8_1:20012929-20012948 Msa1184370:intron 35.0%
TGTCCATACTTAAAGCTCAA+AGG + chr8_1:20012935-20012954 None:intergenic 35.0%
GTGCAATATCTGCAATGATT+TGG - chr8_1:20013144-20013163 Msa1184370:intron 35.0%
GCAATATCTGCAATGATTTG+GGG - chr8_1:20013146-20013165 Msa1184370:intron 35.0%
TGGTCTTTACCAACTTCTTT+AGG - chr8_1:20013241-20013260 Msa1184370:intron 35.0%
CATTAGCATCCTAAAGAAGT+TGG + chr8_1:20013253-20013272 None:intergenic 35.0%
!! CAACTTCTTTAGGATGCTAA+TGG - chr8_1:20013251-20013270 Msa1184370:intron 35.0%
GATGCTAATGGTTATTCAGA+GGG - chr8_1:20013263-20013282 Msa1184370:intron 35.0%
CGTTGGATATTCTGAATCAT+AGG - chr8_1:20013293-20013312 Msa1184370:intron 35.0%
! GATATTCTTCTTTTGGTCAG+TGG - chr8_1:20013338-20013357 Msa1184370:intron 35.0%
! TTTTGGTCAGTGGTTTCATT+AGG - chr8_1:20013348-20013367 Msa1184370:intron 35.0%
!! TTGCAATTTTGACGACTACA+AGG - chr8_1:20013451-20013470 Msa1184370:intron 35.0%
ACGACTACAAGGACAATATT+AGG - chr8_1:20013462-20013481 Msa1184370:intron 35.0%
AGCACAAAATTGTACAAGAG+AGG - chr8_1:20013981-20014000 Msa1184370:five_prime_UTR 35.0%
AAGTGAGTGAGTCTTGAAGA+AGG - chr8_1:20012094-20012113 Msa1184370:three_prime_UTR 40.0%
GGAATTGAAGAAGAGAGAGA+TGG - chr8_1:20012166-20012185 Msa1184370:three_prime_UTR 40.0%
GTTGGAAGCTATGTTACCTT+TGG - chr8_1:20012199-20012218 Msa1184370:three_prime_UTR 40.0%
TGCTGGAATGCTTTGTGTTA+TGG - chr8_1:20012229-20012248 Msa1184370:three_prime_UTR 40.0%
GCTGGAATGCTTTGTGTTAT+GGG - chr8_1:20012230-20012249 Msa1184370:three_prime_UTR 40.0%
AAATCATTGCCGATGTGCTT+AGG + chr8_1:20012390-20012409 None:intergenic 40.0%
GGGAGACTTCCAATATGTTT+AGG - chr8_1:20012810-20012829 Msa1184370:intron 40.0%
AATGTATAGACCACCTAACC+TGG - chr8_1:20013019-20013038 Msa1184370:intron 40.0%
ATGTATAGACCACCTAACCT+GGG - chr8_1:20013020-20013039 Msa1184370:intron 40.0%
GGATGCTAATGGTTATTCAG+AGG - chr8_1:20013262-20013281 Msa1184370:intron 40.0%
! ATTCAGAGGGTTTTCTTCGT+TGG - chr8_1:20013276-20013295 Msa1184370:intron 40.0%
GTGGTTTCATTAGGAGGATT+AGG - chr8_1:20013357-20013376 Msa1184370:intron 40.0%
! TTTTGTGCTTAGTGAAGGTG+TGG + chr8_1:20013970-20013989 None:intergenic 40.0%
AAGTGAGTGAGTCTTGAAGA+AGG - chr8_1:20012094-20012113 Msa1184370:three_prime_UTR 40.0%
GGAATTGAAGAAGAGAGAGA+TGG - chr8_1:20012166-20012185 Msa1184370:three_prime_UTR 40.0%
GTTGGAAGCTATGTTACCTT+TGG - chr8_1:20012199-20012218 Msa1184370:three_prime_UTR 40.0%
TGCTGGAATGCTTTGTGTTA+TGG - chr8_1:20012229-20012248 Msa1184370:three_prime_UTR 40.0%
GCTGGAATGCTTTGTGTTAT+GGG - chr8_1:20012230-20012249 Msa1184370:three_prime_UTR 40.0%
AAATCATTGCCGATGTGCTT+AGG + chr8_1:20012390-20012409 None:intergenic 40.0%
GGGAGACTTCCAATATGTTT+AGG - chr8_1:20012810-20012829 Msa1184370:intron 40.0%
AATGTATAGACCACCTAACC+TGG - chr8_1:20013019-20013038 Msa1184370:intron 40.0%
ATGTATAGACCACCTAACCT+GGG - chr8_1:20013020-20013039 Msa1184370:intron 40.0%
GGATGCTAATGGTTATTCAG+AGG - chr8_1:20013262-20013281 Msa1184370:intron 40.0%
! ATTCAGAGGGTTTTCTTCGT+TGG - chr8_1:20013276-20013295 Msa1184370:intron 40.0%
GTGGTTTCATTAGGAGGATT+AGG - chr8_1:20013357-20013376 Msa1184370:intron 40.0%
! TTTTGTGCTTAGTGAAGGTG+TGG + chr8_1:20013970-20013989 None:intergenic 40.0%
AGTGAGTCTTGAAGAAGGAG+AGG - chr8_1:20012099-20012118 Msa1184370:three_prime_UTR 45.0%
!! TGTGGTTAGCCTAAGCACAT+CGG - chr8_1:20012378-20012397 Msa1184370:three_prime_UTR 45.0%
AGCACATCGGCAATGATTTG+TGG - chr8_1:20012391-20012410 Msa1184370:three_prime_UTR 45.0%
! GCACATCGGCAATGATTTGT+GGG - chr8_1:20012392-20012411 Msa1184370:three_prime_UTR 45.0%
CTGTAATGGCAACGAGAGTA+TGG + chr8_1:20012567-20012586 None:intergenic 45.0%
GGCCCTATGCCTAAACATAT+TGG + chr8_1:20012822-20012841 None:intergenic 45.0%
TAGTTAGAGCTTCCCAGGTT+AGG + chr8_1:20013035-20013054 None:intergenic 45.0%
TGAGATAGTTAGAGCTTCCC+AGG + chr8_1:20013040-20013059 None:intergenic 45.0%
! CTGCAATGATTTGGGGTCTA+TGG - chr8_1:20013153-20013172 Msa1184370:intron 45.0%
! TCTGAATCATAGGGATTGGC+AGG - chr8_1:20013303-20013322 Msa1184370:intron 45.0%
TGGTCAGTGGTTTCATTAGG+AGG - chr8_1:20013351-20013370 Msa1184370:intron 45.0%
! TGTTTTATCTGCGTGCGTGA+AGG - chr8_1:20013622-20013641 Msa1184370:intron 45.0%
! GTTTTATCTGCGTGCGTGAA+GGG - chr8_1:20013623-20013642 Msa1184370:intron 45.0%
AGCAATCTACTCTGCTTCCA+TGG + chr8_1:20013682-20013701 None:intergenic 45.0%
AAGGCAAGGATTGGGATTAC+AGG + chr8_1:20013927-20013946 None:intergenic 45.0%
TTGTACAAGAGAGGACACCA+TGG - chr8_1:20013990-20014009 Msa1184370:five_prime_UTR 45.0%
AGTGAGTCTTGAAGAAGGAG+AGG - chr8_1:20012099-20012118 Msa1184370:three_prime_UTR 45.0%
!! TGTGGTTAGCCTAAGCACAT+CGG - chr8_1:20012378-20012397 Msa1184370:three_prime_UTR 45.0%
AGCACATCGGCAATGATTTG+TGG - chr8_1:20012391-20012410 Msa1184370:three_prime_UTR 45.0%
! GCACATCGGCAATGATTTGT+GGG - chr8_1:20012392-20012411 Msa1184370:three_prime_UTR 45.0%
CTGTAATGGCAACGAGAGTA+TGG + chr8_1:20012567-20012586 None:intergenic 45.0%
GGCCCTATGCCTAAACATAT+TGG + chr8_1:20012822-20012841 None:intergenic 45.0%
TAGTTAGAGCTTCCCAGGTT+AGG + chr8_1:20013035-20013054 None:intergenic 45.0%
TGAGATAGTTAGAGCTTCCC+AGG + chr8_1:20013040-20013059 None:intergenic 45.0%
! CTGCAATGATTTGGGGTCTA+TGG - chr8_1:20013153-20013172 Msa1184370:intron 45.0%
! TCTGAATCATAGGGATTGGC+AGG - chr8_1:20013303-20013322 Msa1184370:intron 45.0%
TGGTCAGTGGTTTCATTAGG+AGG - chr8_1:20013351-20013370 Msa1184370:intron 45.0%
! TGTTTTATCTGCGTGCGTGA+AGG - chr8_1:20013622-20013641 Msa1184370:intron 45.0%
! GTTTTATCTGCGTGCGTGAA+GGG - chr8_1:20013623-20013642 Msa1184370:intron 45.0%
AGCAATCTACTCTGCTTCCA+TGG + chr8_1:20013682-20013701 None:intergenic 45.0%
AAGGCAAGGATTGGGATTAC+AGG + chr8_1:20013927-20013946 None:intergenic 45.0%
TTGTACAAGAGAGGACACCA+TGG - chr8_1:20013990-20014009 Msa1184370:five_prime_UTR 45.0%
AGAGAGAGATGGCGTTGCAT+TGG - chr8_1:20012177-20012196 Msa1184370:three_prime_UTR 50.0%
! AGAGATGGCGTTGCATTGGT+TGG - chr8_1:20012181-20012200 Msa1184370:three_prime_UTR 50.0%
TACATCCACAGAGCTGCTCA+CGG - chr8_1:20012266-20012285 Msa1184370:three_prime_UTR 50.0%
CTTCTTGTCCCTACGTTCCA+TGG + chr8_1:20012424-20012443 None:intergenic 50.0%
TTAGAGCTTCCCAGGTTAGG+TGG + chr8_1:20013032-20013051 None:intergenic 50.0%
! GCTTAGTGAAGGTGTGGACA+GGG + chr8_1:20013964-20013983 None:intergenic 50.0%
! TGCTTAGTGAAGGTGTGGAC+AGG + chr8_1:20013965-20013984 None:intergenic 50.0%
AGAGAGAGATGGCGTTGCAT+TGG - chr8_1:20012177-20012196 Msa1184370:three_prime_UTR 50.0%
! AGAGATGGCGTTGCATTGGT+TGG - chr8_1:20012181-20012200 Msa1184370:three_prime_UTR 50.0%
TACATCCACAGAGCTGCTCA+CGG - chr8_1:20012266-20012285 Msa1184370:three_prime_UTR 50.0%
CTTCTTGTCCCTACGTTCCA+TGG + chr8_1:20012424-20012443 None:intergenic 50.0%
TTAGAGCTTCCCAGGTTAGG+TGG + chr8_1:20013032-20013051 None:intergenic 50.0%
! GCTTAGTGAAGGTGTGGACA+GGG + chr8_1:20013964-20013983 None:intergenic 50.0%
! TGCTTAGTGAAGGTGTGGAC+AGG + chr8_1:20013965-20013984 None:intergenic 50.0%
! CGGCAATGATTTGTGGGACG+TGG - chr8_1:20012398-20012417 Msa1184370:three_prime_UTR 55.0%
! TGATTTGTGGGACGTGGCCA+TGG - chr8_1:20012404-20012423 Msa1184370:three_prime_UTR 55.0%
GTTGCTCTCCAGCTGTTCCA+TGG - chr8_1:20013662-20013681 Msa1184370:CDS 55.0%
CTCTGCTTCCATGGAACAGC+TGG + chr8_1:20013673-20013692 None:intergenic 55.0%
! CGGCAATGATTTGTGGGACG+TGG - chr8_1:20012398-20012417 Msa1184370:three_prime_UTR 55.0%
! TGATTTGTGGGACGTGGCCA+TGG - chr8_1:20012404-20012423 Msa1184370:three_prime_UTR 55.0%
GTTGCTCTCCAGCTGTTCCA+TGG - chr8_1:20013662-20013681 Msa1184370:CDS 55.0%
CTCTGCTTCCATGGAACAGC+TGG + chr8_1:20013673-20013692 None:intergenic 55.0%
GGACGTGGCCATGGAACGTA+GGG - chr8_1:20012413-20012432 Msa1184370:three_prime_UTR 60.0%
GGACGTGGCCATGGAACGTA+GGG - chr8_1:20012413-20012432 Msa1184370:three_prime_UTR 60.0%
CTCGTCCGTGAGCAGCTCTG+TGG + chr8_1:20012274-20012293 None:intergenic 65.0%
GGGACGTGGCCATGGAACGT+AGG - chr8_1:20012412-20012431 Msa1184370:three_prime_UTR 65.0%
CTCGTCCGTGAGCAGCTCTG+TGG + chr8_1:20012274-20012293 None:intergenic 65.0%
GGGACGTGGCCATGGAACGT+AGG - chr8_1:20012412-20012431 Msa1184370:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 20012080 20014037 20012080 ID=Msa1184370;Name=Msa1184370
chr8_1 mRNA 20012080 20014037 20012080 ID=Msa1184370-mRNA-1;Parent=Msa1184370;Name=Msa1184370-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|0.5|0.33|3|425|64
chr8_1 exon 20012080 20012497 20012080 ID=Msa1184370-mRNA-1:exon:7761;Parent=Msa1184370-mRNA-1
chr8_1 exon 20013637 20013730 20013637 ID=Msa1184370-mRNA-1:exon:7760;Parent=Msa1184370-mRNA-1
chr8_1 exon 20013825 20014037 20013825 ID=Msa1184370-mRNA-1:exon:7759;Parent=Msa1184370-mRNA-1
chr8_1 five_prime_UTR 20013933 20014037 20013933 ID=Msa1184370-mRNA-1:five_prime_utr;Parent=Msa1184370-mRNA-1
chr8_1 CDS 20013825 20013932 20013825 ID=Msa1184370-mRNA-1:cds;Parent=Msa1184370-mRNA-1
chr8_1 CDS 20013644 20013730 20013644 ID=Msa1184370-mRNA-1:cds;Parent=Msa1184370-mRNA-1
chr8_1 three_prime_UTR 20013637 20013643 20013637 ID=Msa1184370-mRNA-1:three_prime_utr;Parent=Msa1184370-mRNA-1
chr8_1 three_prime_UTR 20012080 20012497 20012080 ID=Msa1184370-mRNA-1:three_prime_utr;Parent=Msa1184370-mRNA-1
Gene Sequence

>Msa1184370

ATGGCGTTGCATTGGTTGGAAGCTATGTTACCTTTGGGAATAATTGCTGGAATGCTTTGTGTTATGGGTAACGCTCAGTATTACATCCACAGAGCTGCTCACGGACGACCTAAGCACATCGGCAATGATTTGTGGGACGTGGCCATGGAACGTAGGGACAAGAAGCTCGTCGATCAAGCTTCTTCTTCCAATTAA

Protein sequence

>Msa1184370

MALHWLEAMLPLGIIAGMLCVMGNAQYYIHRAAHGRPKHIGNDLWDVAMERRDKKLVDQASSSN*