AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0441550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441550 MtrunA17_Chr3g0079321 95.937 443 18 0 86 528 149 591 0.0 855
Msa0441550 MtrunA17_Chr3g0079321 88.889 90 10 0 1 90 1 90 9.98e-46 169
Msa0441550 MtrunA17_Chr4g0056511 66.895 438 145 0 87 524 148 585 0.0 625
Msa0441550 MtrunA17_Chr4g0056511 59.756 82 33 0 8 89 6 87 2.93e-13 72.4
Msa0441550 MtrunA17_Chr7g0234061 61.905 441 161 4 87 523 150 587 0.0 558
Msa0441550 MtrunA17_Chr7g0234061 64.706 68 24 0 22 89 22 89 3.65e-11 65.9
Msa0441550 MtrunA17_Chr3g0143671 49.132 403 184 7 88 489 152 534 1.75e-125 378
Msa0441550 MtrunA17_Chr1g0157341 40.293 546 242 10 8 489 8 533 3.98e-119 361
Msa0441550 MtrunA17_Chr4g0024861 39.775 533 236 11 22 489 19 531 3.48e-118 358
Msa0441550 MtrunA17_Chr4g0038671 47.395 403 190 7 88 489 152 533 9.56e-118 358
Msa0441550 MtrunA17_Chr5g0402831 47.277 404 190 6 86 489 151 531 6.04e-117 355
Msa0441550 MtrunA17_Chr8g0374271 43.578 436 213 8 56 489 130 534 1.94e-113 347
Msa0441550 MtrunA17_Chr2g0322441 46.410 390 188 6 101 489 165 534 4.98e-112 343
Msa0441550 MtrunA17_Chr4g0024641 44.337 415 210 6 82 495 66 460 3.75e-110 350
Msa0441550 MtrunA17_Chr4g0024641 43.662 71 40 0 425 495 514 584 8.75e-12 68.2
Msa0441550 MtrunA17_Chr4g0024641 43.662 71 40 0 425 495 576 646 8.75e-12 68.2
Msa0441550 MtrunA17_Chr4g0024641 43.662 71 40 0 425 495 638 708 8.75e-12 68.2
Msa0441550 MtrunA17_Chr4g0024641 43.662 71 40 0 425 495 700 770 8.75e-12 68.2
Msa0441550 MtrunA17_Chr4g0024641 43.662 71 40 0 425 495 824 894 8.75e-12 68.2
Msa0441550 MtrunA17_Chr4g0024641 46.154 65 35 0 425 489 886 950 1.54e-11 67.4
Msa0441550 MtrunA17_Chr4g0024641 45.455 66 36 0 430 495 457 522 2.25e-11 66.6
Msa0441550 MtrunA17_Chr4g0024641 42.254 71 41 0 425 495 762 832 9.77e-11 64.7
Msa0441550 MtrunA17_Chr4g0075071 44.924 394 196 6 97 489 162 535 9.07e-110 337
Msa0441550 MtrunA17_Chr8g0374261 43.826 413 204 7 88 496 151 539 2.41e-107 331
Msa0441550 MtrunA17_Chr8g0374261 53.571 56 26 0 34 89 34 89 3.98e-11 65.5
Msa0441550 MtrunA17_Chr4g0043251 41.278 407 219 8 87 489 148 538 3.47e-99 310
Msa0441550 MtrunA17_Chr4g0043251 50.000 86 39 1 4 89 6 87 2.75e-11 65.9
Msa0441550 MtrunA17_Chr1g0197301 46.246 333 171 6 159 489 4 330 2.18e-95 293
Msa0441550 MtrunA17_Chr3g0121151 40.196 408 222 9 87 489 187 577 2.45e-95 301
Msa0441550 MtrunA17_Chr4g0043261 39.853 409 218 9 87 489 146 532 2.09e-94 297
Msa0441550 MtrunA17_Chr3g0121161 39.706 408 224 9 87 489 187 577 1.01e-93 297
Msa0441550 MtrunA17_Chr3g0121171 40.686 408 220 9 87 489 147 537 2.38e-90 303
Msa0441550 MtrunA17_Chr3g0121171 39.951 408 223 9 87 489 722 1112 3.08e-89 300
Msa0441550 MtrunA17_Chr3g0121171 39.951 408 223 9 87 489 1297 1687 4.22e-88 296
Msa0441550 MtrunA17_Chr3g0121171 39.416 411 221 8 87 489 1863 2253 2.42e-87 295
Msa0441550 MtrunA17_Chr5g0404361 29.176 425 256 15 91 488 205 611 2.52e-34 137
Msa0441550 MtrunA17_Chr5g0404341 28.499 393 231 16 91 453 159 531 2.00e-30 125
Msa0441550 MtrunA17_Chr3g0118321 26.185 443 266 18 87 489 142 563 1.50e-29 122
Msa0441550 MtrunA17_Chr4g0075781 38.068 176 79 3 88 263 21 166 3.14e-29 113
Msa0441550 MtrunA17_Chr7g0237491 28.784 403 236 15 89 453 156 545 5.09e-29 120
Msa0441550 MtrunA17_Chr5g0429511 28.497 386 239 14 91 453 152 523 5.26e-29 120
Msa0441550 MtrunA17_Chr7g0238941 27.692 390 250 12 91 453 159 543 2.23e-28 119
Msa0441550 MtrunA17_Chr4g0005921 23.775 551 306 17 32 488 27 557 8.29e-28 117
Msa0441550 MtrunA17_Chr8g0346581 25.512 537 303 18 10 453 4 536 2.19e-27 115
Msa0441550 MtrunA17_Chr7g0238351 28.141 398 248 12 88 453 155 546 4.11e-27 115
Msa0441550 MtrunA17_Chr8g0382691 25.404 433 267 11 91 489 158 568 2.89e-26 112
Msa0441550 MtrunA17_Chr7g0237441 26.733 404 245 15 88 453 155 545 3.27e-26 112
Msa0441550 MtrunA17_Chr3g0104061 24.111 506 287 16 32 453 29 521 5.05e-26 111
Msa0441550 MtrunA17_Chr5g0436461 28.244 393 230 15 91 453 149 519 6.22e-26 111
Msa0441550 MtrunA17_Chr3g0118331 25.986 431 259 15 96 489 155 562 9.18e-25 108
Msa0441550 MtrunA17_Chr4g0031901 25.871 402 239 13 91 453 169 550 1.49e-24 107
Msa0441550 MtrunA17_Chr7g0238981 26.076 395 258 13 88 453 169 558 2.00e-23 103
Msa0441550 MtrunA17_Chr5g0431581 27.436 390 242 13 91 453 150 525 1.14e-20 95.5
Msa0441550 MtrunA17_Chr5g0437681 25.629 437 268 19 91 488 149 567 1.32e-19 92.0
Msa0441550 MtrunA17_Chr3g0114211 25.964 389 251 15 91 453 158 535 1.40e-19 92.0
Msa0441550 MtrunA17_Chr2g0278811 26.253 419 244 17 91 453 163 572 2.79e-19 91.3
Msa0441550 MtrunA17_Chr3g0118351 23.988 346 210 8 181 489 5 334 2.19e-18 86.7
Msa0441550 MtrunA17_Chr4g0024651 47.692 65 33 1 22 85 19 83 3.44e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0441550 AT4G25240.2 67.381 420 136 1 86 505 149 567 0.0 617
Msa0441550 AT4G25240.2 59.036 83 34 0 8 90 8 90 4.16e-17 85.1
Msa0441550 AT4G25240.1 67.381 420 136 1 86 505 149 567 0.0 617
Msa0441550 AT4G25240.1 59.036 83 34 0 8 90 8 90 4.16e-17 85.1
Msa0441550 AT5G51480.1 63.288 444 160 3 86 527 148 590 0.0 613
Msa0441550 AT5G51480.1 62.857 70 26 0 21 90 20 89 7.65e-19 90.5
Msa0441550 AT4G12420.1 65.796 421 144 0 87 507 146 566 0.0 595
Msa0441550 AT4G12420.1 58.427 89 33 1 1 89 1 85 6.19e-23 103
Msa0441550 AT4G12420.2 65.796 421 144 0 87 507 146 566 0.0 595
Msa0441550 AT4G12420.2 58.427 89 33 1 1 89 1 85 6.19e-23 103
Msa0441550 AT5G48450.2 56.696 448 174 7 87 528 150 583 6.91e-175 506
Msa0441550 AT5G48450.2 54.545 77 35 0 13 89 13 89 6.72e-16 81.3
Msa0441550 AT5G48450.1 57.079 445 170 7 87 523 150 581 3.98e-174 505
Msa0441550 AT5G48450.1 54.545 77 35 0 13 89 13 89 7.47e-16 80.9
Msa0441550 AT4G22010.1 47.772 404 189 7 88 489 148 531 2.09e-119 362
Msa0441550 AT1G21850.1 46.898 403 191 6 88 489 151 531 1.04e-117 358
Msa0441550 AT1G21850.1 43.038 79 45 0 11 89 11 89 1.48e-12 70.5
Msa0441550 AT1G76160.1 45.409 403 198 6 88 489 150 531 8.38e-116 353
Msa0441550 AT1G76160.1 41.667 84 47 1 6 89 7 88 3.94e-11 65.9
Msa0441550 AT1G41830.1 45.255 411 203 7 88 497 151 540 6.26e-113 346
Msa0441550 AT1G21860.1 44.059 404 203 6 87 489 150 531 8.36e-111 340
Msa0441550 AT1G21860.1 44.304 79 44 0 11 89 11 89 1.75e-13 73.6
Msa0441550 AT1G75790.1 42.482 419 209 8 86 492 147 545 2.46e-109 337
Msa0441550 AT4G38420.1 45.721 409 195 8 88 489 152 540 4.63e-109 336
Msa0441550 AT4G38420.1 37.037 81 50 1 10 90 12 91 4.32e-11 65.9
Msa0441550 AT3G13390.1 43.137 408 211 7 87 489 149 540 1.23e-108 335
Msa0441550 AT4G28090.1 45.074 406 199 10 88 489 150 535 2.66e-108 334
Msa0441550 AT1G55570.1 41.205 415 223 7 87 496 150 548 5.11e-106 328
Msa0441550 AT1G55560.1 37.615 545 253 13 15 489 10 537 1.82e-105 327
Msa0441550 AT5G66920.1 41.584 404 211 7 88 489 159 539 8.10e-103 320
Msa0441550 AT5G66920.1 55.102 49 22 0 41 89 49 97 8.51e-11 65.1
Msa0441550 AT3G13400.2 41.565 409 215 9 87 489 148 538 1.54e-101 317
Msa0441550 AT3G13400.1 41.565 409 215 9 87 489 148 538 1.54e-101 317
Msa0441550 AT4G37160.1 43.137 408 205 9 86 489 151 535 9.38e-99 309
Msa0441550 AT2G23630.2 41.707 410 217 7 87 495 156 544 2.07e-96 303
Msa0441550 AT2G23630.1 41.707 410 217 7 87 495 151 539 2.54e-96 303
Msa0441550 AT4G38420.3 44.857 350 166 8 88 430 152 481 7.58e-85 271
Msa0441550 AT4G38420.3 36.585 82 51 1 9 90 11 91 4.52e-11 65.9
Msa0441550 AT4G38420.2 43.034 323 157 8 88 403 152 454 9.96e-73 239
Msa0441550 AT4G38420.2 36.585 82 51 1 9 90 11 91 5.06e-11 65.5
Msa0441550 AT4G37160.2 40.312 320 168 8 86 403 151 449 1.53e-66 222
Msa0441550 AT4G39830.1 23.540 582 323 16 8 489 19 578 1.50e-37 146
Msa0441550 AT4G39830.4 24.764 424 268 10 101 489 63 470 7.26e-34 134
Msa0441550 AT4G39830.2 24.342 456 289 11 74 489 44 483 8.17e-34 134
Msa0441550 AT4G39830.3 24.342 456 289 11 74 489 42 481 1.23e-33 134
Msa0441550 AT5G21105.1 27.483 433 251 15 96 489 168 576 1.97e-31 128
Msa0441550 AT5G21105.3 28.718 390 220 14 96 446 168 538 3.27e-30 124
Msa0441550 AT5G21105.2 28.030 396 226 13 130 489 13 385 4.02e-30 122
Msa0441550 AT5G58910.2 25.185 540 300 20 5 453 6 532 6.58e-30 124
Msa0441550 AT5G58910.1 26.547 501 269 21 38 453 2 488 3.23e-29 121
Msa0441550 AT5G58910.3 26.036 507 271 20 38 453 38 531 6.58e-29 120
Msa0441550 AT5G48100.1 27.342 395 251 12 90 457 146 531 2.85e-27 116
Msa0441550 AT5G21100.1 23.963 434 267 12 96 489 151 561 1.90e-26 113
Msa0441550 AT5G03260.1 29.695 394 224 16 91 453 151 522 7.81e-25 108
Msa0441550 AT5G60020.1 27.654 405 245 15 88 453 147 542 2.90e-24 107
Msa0441550 AT5G60020.3 27.654 405 245 15 88 453 115 510 3.00e-24 106
Msa0441550 AT5G01190.1 25.140 537 297 18 8 453 1 523 1.09e-23 105
Msa0441550 AT5G60020.2 27.930 401 241 15 88 449 147 538 2.14e-23 104
Msa0441550 AT2G30210.1 27.595 395 242 15 91 453 153 535 1.89e-22 101
Msa0441550 AT1G18140.1 26.253 419 231 18 98 461 161 556 2.38e-22 101
Msa0441550 AT5G01190.2 25.407 492 267 16 49 453 31 509 3.64e-22 100
Msa0441550 AT2G38080.1 25.945 397 241 15 88 453 149 523 4.57e-22 100
Msa0441550 AT2G29130.1 24.688 401 247 13 91 453 155 538 1.70e-21 98.6
Msa0441550 AT3G09220.2 25.581 387 249 12 91 448 54 430 2.67e-21 97.4
Msa0441550 AT3G09220.1 25.581 387 249 12 91 448 151 527 2.94e-21 97.8
Msa0441550 AT2G46570.1 25.336 446 252 12 91 488 157 569 1.22e-20 95.9
Msa0441550 AT2G46570.2 25.336 446 252 12 91 488 72 484 1.41e-20 95.1

Find 118 sgRNAs with CRISPR-Local

Find 382 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATCAACGGTACATATAA+AGG 0.235380 3_3:-9965363 Msa0441550:CDS
TTGCAGGTTATAGCTATAAA+TGG 0.248006 3_3:-9968310 Msa0441550:intron
TGTTCTGTTCATCGGCTTGC+TGG 0.257454 3_3:+9965404 None:intergenic
GAATCTGAGAGCAGAAAATT+TGG 0.265348 3_3:-9964394 Msa0441550:CDS
TCGGTGTCGCCGGCTTCTTC+AGG 0.271054 3_3:+9964327 None:intergenic
TCACATCTAGTTAAAGCTTT+TGG 0.272272 3_3:-9963835 Msa0441550:exon
CTATTCAAAATGTGATTAAA+AGG 0.277027 3_3:-9963668 Msa0441550:three_prime_UTR
TAGTAATTCATATTCTTAAT+AGG 0.282613 3_3:-9963634 Msa0441550:three_prime_UTR
TAGTTGAAATTCCCACATTA+TGG 0.287649 3_3:+9966856 None:intergenic
TTCTTACCCAACAACGAAAA+AGG 0.291492 3_3:+9965275 None:intergenic
TCCACCACTGCTTCTCCTCT+TGG 0.296372 3_3:-9969219 Msa0441550:CDS
AAGTGTGATTAGTAATTTCT+TGG 0.309191 3_3:-9963767 Msa0441550:three_prime_UTR
AATAATACTCTTGTACCTAA+TGG 0.326501 3_3:-9967447 Msa0441550:CDS
TCCTCTTGGTGTTCCTCAAA+AGG 0.329327 3_3:-9969205 Msa0441550:intron
CTTGGATTTAGGATGGACTA+TGG 0.332483 3_3:-9965181 Msa0441550:intron
GTTTCATGATCTATCCCATT+AGG 0.337800 3_3:+9967432 None:intergenic
GCTATAAATGGGAAATTTCC+TGG 0.342290 3_3:-9968298 Msa0441550:CDS
TCATTATGGCAGAAGGTTAC+AGG 0.370428 3_3:-9966648 Msa0441550:CDS
ATAATACTCTTGTACCTAAT+GGG 0.372995 3_3:-9967446 Msa0441550:CDS
AGTAGTCTGTACTCGCGTTC+TGG 0.373371 3_3:+9966703 None:intergenic
CTCTGTTCAAAACTTTCATC+TGG 0.374331 3_3:-9965307 Msa0441550:CDS
CGAAAGGACCCTTGAGGGTT+AGG 0.374840 3_3:+9965597 None:intergenic
TAAAACCTGACGTTCCGTTT+CGG 0.375200 3_3:-9965473 Msa0441550:CDS
GGTTTGTGAATGAATCATTA+TGG 0.383149 3_3:-9966662 Msa0441550:CDS
AATTCCAAGGGTGGAGCATC+TGG 0.393938 3_3:-9966603 Msa0441550:CDS
CCAGATGGTGTTCTTATCAA+TGG 0.394586 3_3:-9967489 Msa0441550:CDS
TCAAAATCATAATCTATTGC+TGG 0.416012 3_3:-9966817 Msa0441550:CDS
TCACCGTCGGGCTGCGCAAA+AGG 0.416320 3_3:+9967702 None:intergenic
CAAGAAACACTTACAATAAG+TGG 0.417064 3_3:-9965141 Msa0441550:CDS
CTAACCCTCAAGGGTCCTTT+CGG 0.421813 3_3:-9965596 Msa0441550:CDS
CCACATTATGGACACGAATT+CGG 0.426819 3_3:+9966868 None:intergenic
GTTCAAAACTTTCATCTGGA+TGG 0.433014 3_3:-9965303 Msa0441550:CDS
ACAACTCGAGCTGCAATTAA+CGG 0.437704 3_3:-9965507 Msa0441550:CDS
TGGAGCATGGACAGCAATCC+TGG 0.442003 3_3:-9964442 Msa0441550:CDS
ATCACTGGTGTTCTGTTCAT+CGG 0.467144 3_3:+9965396 None:intergenic
TCATCAACGGTACATATAAA+GGG 0.471123 3_3:-9965362 Msa0441550:CDS
AGGATTGCTGTCCATGCTCC+AGG 0.473930 3_3:+9964444 None:intergenic
GTTCTGTTCATCGGCTTGCT+GGG 0.478544 3_3:+9965405 None:intergenic
TCATCTGGTGGTGGTGGCAG+AGG 0.480319 3_3:+9966579 None:intergenic
AGAGTATTATTGTACTGATA+AGG 0.480921 3_3:+9967459 None:intergenic
TGCAGGTTATAGCTATAAAT+GGG 0.486118 3_3:-9968309 Msa0441550:intron
TACTAATCACACTTCTTGAC+AGG 0.487280 3_3:+9963776 None:intergenic
CAGATGGTGTTCTTATCAAT+GGG 0.490691 3_3:-9967488 Msa0441550:CDS
TTCCCATGAGCAATGTGAAA+AGG 0.492544 3_3:+9963870 None:intergenic
GCAAGCCGAAACGGAACGTC+AGG 0.492678 3_3:+9965468 None:intergenic
AGGACCAGATGCTCCACCCT+TGG 0.494547 3_3:+9966599 None:intergenic
CTCTAGACAATGTTGGATCA+TGG 0.498904 3_3:-9964416 Msa0441550:CDS
TTTACACTACTCAAATTCCA+AGG 0.507295 3_3:-9966616 Msa0441550:CDS
GAAACAATTAACGTTGATCC+AGG 0.516538 3_3:-9967414 Msa0441550:intron
TTCAAAACTTTCATCTGGAT+GGG 0.517941 3_3:-9965302 Msa0441550:CDS
ACCAACTTTGATATTCATGC+TGG 0.519723 3_3:-9966756 Msa0441550:CDS
GCTCTAAGATCAACACTTGA+CGG 0.523581 3_3:-9967531 Msa0441550:CDS
GAAGCCGGCGACACCGAGAC+TGG 0.527100 3_3:-9964321 Msa0441550:CDS
TGAAGTTCTGTGTAAACAGT+TGG 0.529500 3_3:+9969249 None:intergenic
ACCAAGAGGAGAAGCAGTGG+TGG 0.530783 3_3:+9969218 None:intergenic
CCGAATTCGTGTCCATAATG+TGG 0.531461 3_3:-9966868 Msa0441550:CDS
GCTGACAACAATCAGCTAAG+AGG 0.532345 3_3:-9965447 Msa0441550:CDS
ATTAGTAATTTCTTGGTCTG+AGG 0.532746 3_3:-9963760 Msa0441550:three_prime_UTR
GTCTGTACTCGCGTTCTGGT+CGG 0.532806 3_3:+9966707 None:intergenic
GCAGATTCTACTTTGAGAAG+TGG 0.534225 3_3:-9963896 Msa0441550:CDS
CCATTGATAAGAACACCATC+TGG 0.534528 3_3:+9967489 None:intergenic
TGAAGGGTATTACACCGATC+AGG 0.538222 3_3:-9966787 Msa0441550:CDS
TGCACCAGTCTCGGTGTCGC+CGG 0.546572 3_3:+9964317 None:intergenic
TTGTTGTCAGCAAGCCGAAA+CGG 0.546970 3_3:+9965459 None:intergenic
CGTACCGAAAGGACCCTTGA+GGG 0.550715 3_3:+9965592 None:intergenic
CATAATGAAAATTTCACCGT+CGG 0.555555 3_3:+9967689 None:intergenic
GTTGTGCCGTTGATCGCCAC+CGG 0.555618 3_3:+9965525 None:intergenic
ATAATGAAAATTTCACCGTC+GGG 0.559708 3_3:+9967690 None:intergenic
GTGACATTAATCACAGGTCC+AGG 0.561946 3_3:+9968280 None:intergenic
TTTGTAGTGACATTAATCAC+AGG 0.563923 3_3:+9968274 None:intergenic
AGTGAATGTGTATAATCAGC+TGG 0.564829 3_3:-9968239 Msa0441550:CDS
CGAATTCGTGTCCATAATGT+GGG 0.565215 3_3:-9966867 Msa0441550:CDS
ATGATTGATCTATCAATCAC+TGG 0.566439 3_3:+9965381 None:intergenic
GTTGGTGTAATTTGCCTGAT+CGG 0.567425 3_3:+9966773 None:intergenic
GCCAGCATGAATATCAAAGT+TGG 0.570786 3_3:+9966755 None:intergenic
TGTACTCGCGTTCTGGTCGG+TGG 0.571925 3_3:+9966710 None:intergenic
ACAGCACCGGTGGCGATCAA+CGG 0.572276 3_3:-9965531 Msa0441550:CDS
TGAGAGCAGAAAATTTGGAC+AGG 0.573207 3_3:-9964389 Msa0441550:CDS
CTTGTTAAAGGTTACAGCAC+CGG 0.575674 3_3:-9965544 Msa0441550:CDS
CCAGAAAATGTTCTATATTG+CGG 0.576586 3_3:-9964294 Msa0441550:CDS
CTTGACGGTGGAAAAGACCT+TGG 0.578216 3_3:-9967516 Msa0441550:CDS
AATATCTCGCAGCACAACTC+AGG 0.579985 3_3:-9965113 Msa0441550:intron
TGGTGTTCTTATCAATGGGA+AGG 0.580003 3_3:-9967484 Msa0441550:CDS
AAAGCAGAAAAGAGTAGGAC+TGG 0.580521 3_3:+9966733 None:intergenic
AAGAAACACTTACAATAAGT+GGG 0.581952 3_3:-9965140 Msa0441550:CDS
TTAGGATGGACTATGGCGAT+TGG 0.582570 3_3:-9965174 Msa0441550:intron
ATTGTCAATCCTGAAGAAGC+CGG 0.584686 3_3:-9964336 Msa0441550:CDS
CACTACTCAAATTCCAAGGG+TGG 0.584854 3_3:-9966612 Msa0441550:CDS
ACTATATTGTTGCAAGTGCG+AGG 0.588609 3_3:-9966683 Msa0441550:CDS
AACACCAAGAGGAGAAGCAG+TGG 0.595232 3_3:+9969215 None:intergenic
CTGGTGTCTCTAGACAATGT+TGG 0.597006 3_3:-9964423 Msa0441550:CDS
TTACACTACTCAAATTCCAA+GGG 0.598552 3_3:-9966615 Msa0441550:CDS
GAGCTCGTCCTAACCCTCAA+GGG 0.599281 3_3:-9965605 Msa0441550:CDS
GAGCAGAAAATTTGGACAGG+TGG 0.600104 3_3:-9964386 Msa0441550:CDS
AATTTGGACAGGTGGTACCT+AGG 0.611380 3_3:-9964378 Msa0441550:CDS
TCAGATAAGTTTCTTGACCT+AGG 0.612670 3_3:+9964361 None:intergenic
GAACACCATCTGGTATTCCA+AGG 0.613050 3_3:+9967499 None:intergenic
GGTGTTCTTATCAATGGGAA+GGG 0.615393 3_3:-9967483 Msa0441550:CDS
GGAGCTCGTCCTAACCCTCA+AGG 0.616297 3_3:-9965606 Msa0441550:CDS
CCTCAAGGGTCCTTTCGGTA+CGG 0.617590 3_3:-9965591 Msa0441550:CDS
CTATTGCTGGTAGAAACTGA+AGG 0.617963 3_3:-9966804 Msa0441550:CDS
GAATGAATCATTATGGCAGA+AGG 0.620430 3_3:-9966655 Msa0441550:CDS
CTTGATTGAGCCGTACCGAA+AGG 0.621022 3_3:+9965581 None:intergenic
TATTGCTGGTAGAAACTGAA+GGG 0.621251 3_3:-9966803 Msa0441550:CDS
GGTGGAAAGCAGAAAAGAGT+AGG 0.625394 3_3:+9966728 None:intergenic
ATGAAGATCTTCTCATAACA+TGG 0.639852 3_3:-9968216 Msa0441550:intron
CAACATTGTCTAGAGACACC+AGG 0.642184 3_3:+9964424 None:intergenic
AGGCTAAACACATCTGCAAG+TGG 0.642227 3_3:-9965627 Msa0441550:CDS
AAAGACCTTGGAATACCAGA+TGG 0.643410 3_3:-9967504 Msa0441550:CDS
ATTGATAGATCAATCATCAA+CGG 0.647112 3_3:-9965375 Msa0441550:CDS
GTTAAAGGTTACAGCACCGG+TGG 0.660172 3_3:-9965541 Msa0441550:CDS
TAGGTCAAGAAACTTATCTG+AGG 0.669852 3_3:-9964359 Msa0441550:CDS
TTGAAAACAGAGCAATGTTG+AGG 0.674788 3_3:+9969292 None:intergenic
TTGGTATACTCAAGACTACA+CGG 0.674976 3_3:-9967658 Msa0441550:intron
TATACACATTCACTACCACA+TGG 0.678509 3_3:+9968248 None:intergenic
CTAAGATCAACACTTGACGG+TGG 0.682768 3_3:-9967528 Msa0441550:CDS
CCGTACCGAAAGGACCCTTG+AGG 0.699100 3_3:+9965591 None:intergenic
TGTCACTACAAATAACCATG+TGG 0.751441 3_3:-9968263 Msa0441550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGCTTAAATTAAAAAATTA+GGG + chr3_3:9964449-9964468 None:intergenic 10.0%
!! TTAGCTTAAATTAAAAAATT+AGG + chr3_3:9964450-9964469 None:intergenic 10.0%
!!! AATTACAAATATATTTTTTC+AGG - chr3_3:9966082-9966101 Msa0441550:intron 10.0%
!!! TTTTCTAATGATTTTAATTT+AGG - chr3_3:9967936-9967955 Msa0441550:intron 10.0%
!!! TTTCTAATGATTTTAATTTA+GGG - chr3_3:9967937-9967956 Msa0441550:intron 10.0%
!!! TTTTTTGAAAGAAAGAAAAA+AGG + chr3_3:9963888-9963907 None:intergenic 15.0%
!!! CTTTTTAAACATATTTGAAA+GGG + chr3_3:9964269-9964288 None:intergenic 15.0%
!!! ACTTTTTAAACATATTTGAA+AGG + chr3_3:9964270-9964289 None:intergenic 15.0%
!!! TGTTGATTATGATAATAATA+TGG - chr3_3:9964638-9964657 Msa0441550:intron 15.0%
!! TATGTTTGTTTGATAAATAT+AGG - chr3_3:9965429-9965448 Msa0441550:CDS 15.0%
!! ATATCATATCATTATTTGTA+CGG + chr3_3:9965662-9965681 None:intergenic 15.0%
!!! CATTATTTCTTAAGTATTTT+TGG - chr3_3:9966533-9966552 Msa0441550:intron 15.0%
!! TATAAAATATGGTCAAATAA+TGG - chr3_3:9966767-9966786 Msa0441550:CDS 15.0%
!!! GTGCTTTTTAAAATAAATTA+AGG - chr3_3:9968056-9968075 Msa0441550:intron 15.0%
!! TAGTAATTCATATTCTTAAT+AGG - chr3_3:9969348-9969367 Msa0441550:exon 15.0%
!!! TCAAAAAAGTGTTGTTTTTT+TGG - chr3_3:9963900-9963919 Msa0441550:CDS 20.0%
!!! CAAAAAAGTGTTGTTTTTTT+GGG - chr3_3:9963901-9963920 Msa0441550:CDS 20.0%
!!! AAAAAAAGGACTCATTTTTA+TGG + chr3_3:9963941-9963960 None:intergenic 20.0%
!!! AATGATCAATTTTTTTGTGT+TGG - chr3_3:9964107-9964126 Msa0441550:intron 20.0%
!!! AATTTTTGTTGTGTTTCTTA+TGG - chr3_3:9964223-9964242 Msa0441550:intron 20.0%
!!! AAAAAGTGTTGATTTGAAAA+AGG - chr3_3:9964283-9964302 Msa0441550:CDS 20.0%
!! CAATAAATTCTTAGAACATT+TGG + chr3_3:9964620-9964639 None:intergenic 20.0%
!!! GTATGTTATTTTGAAATGTA+TGG - chr3_3:9964907-9964926 Msa0441550:intron 20.0%
!! TAAGATAAAAAAGAAGAGAT+AGG - chr3_3:9964938-9964957 Msa0441550:intron 20.0%
!! TGATAAAAAATGTTTATTGC+AGG - chr3_3:9965053-9965072 Msa0441550:intron 20.0%
!! AAATTGGACAATAAAGTTAA+TGG + chr3_3:9965605-9965624 None:intergenic 20.0%
!! ATTAACTTTATTGTCCAATT+TGG - chr3_3:9965604-9965623 Msa0441550:CDS 20.0%
!!! GAAGAATAAGATATAGTTTT+TGG + chr3_3:9965819-9965838 None:intergenic 20.0%
!! AATCAAGGATATAAGAAAAA+GGG + chr3_3:9965925-9965944 None:intergenic 20.0%
!! AAATCAAGGATATAAGAAAA+AGG + chr3_3:9965926-9965945 None:intergenic 20.0%
!!! ATTTTGAATTCGAAAGTTTA+AGG + chr3_3:9966152-9966171 None:intergenic 20.0%
!!! AACAAATATCTATTGTTTCT+GGG - chr3_3:9966731-9966750 Msa0441550:CDS 20.0%
!! ATGCTATTCAGTATAAAATA+TGG - chr3_3:9966756-9966775 Msa0441550:CDS 20.0%
!!! AGGTAATAATAATTCAGTTT+TGG + chr3_3:9966864-9966883 None:intergenic 20.0%
!! ATATAACAATTTACAAGAGT+GGG - chr3_3:9966904-9966923 Msa0441550:intron 20.0%
!! TGGAATGTAAAATATAAATG+TGG - chr3_3:9967159-9967178 Msa0441550:intron 20.0%
!!! TATATTTAGTTCTAATGACT+CGG - chr3_3:9967214-9967233 Msa0441550:intron 20.0%
!!! TACTGATTTTTACTTGTTAA+AGG - chr3_3:9967426-9967445 Msa0441550:CDS 20.0%
!!! ATTTGTAACAATTGATTTCT+TGG - chr3_3:9967783-9967802 Msa0441550:intron 20.0%
!! AATCATTTGAAAAAAACCTA+AGG + chr3_3:9968003-9968022 None:intergenic 20.0%
!!! ATTTTTTCTCGTTAATTAGA+TGG - chr3_3:9968084-9968103 Msa0441550:intron 20.0%
!! TTATAAATCTTCAATTCCTA+GGG - chr3_3:9968470-9968489 Msa0441550:intron 20.0%
!! AAAAATAGACTTGTAACAAA+CGG + chr3_3:9968772-9968791 None:intergenic 20.0%
!!! GTTTTTTGTTCTTTTAGTTA+TGG - chr3_3:9969257-9969276 Msa0441550:CDS 20.0%
!! CTATTCAAAATGTGATTAAA+AGG - chr3_3:9969314-9969333 Msa0441550:CDS 20.0%
!! ATTCTCACAATTTTCAACAA+TGG - chr3_3:9963636-9963655 Msa0441550:three_prime_UTR 25.0%
!! TTCTCACAATTTTCAACAAT+GGG - chr3_3:9963637-9963656 Msa0441550:three_prime_UTR 25.0%
!!! TTTAAGCTTGTTTTTTCATC+TGG - chr3_3:9963834-9963853 Msa0441550:exon 25.0%
!!! TTAAGCTTGTTTTTTCATCT+GGG - chr3_3:9963835-9963854 Msa0441550:exon 25.0%
! GCACAAACAAAATAAAATTG+GGG + chr3_3:9964427-9964446 None:intergenic 25.0%
! GGCACAAACAAAATAAAATT+GGG + chr3_3:9964428-9964447 None:intergenic 25.0%
!!! CAAAATTTTGATGTTTACTG+CGG - chr3_3:9964869-9964888 Msa0441550:intron 25.0%
! AAATAACATACAGAAACCAA+AGG + chr3_3:9964898-9964917 None:intergenic 25.0%
! TGCAAGTATATGAATAACAA+TGG + chr3_3:9965021-9965040 None:intergenic 25.0%
!! GGTGAAATTTTCATTATGAT+TGG - chr3_3:9965298-9965317 Msa0441550:CDS 25.0%
!!! TTTTCATTATGATTGGTGAT+TGG - chr3_3:9965305-9965324 Msa0441550:CDS 25.0%
!! AGAGTATTATTGTACTGATA+AGG + chr3_3:9965526-9965545 None:intergenic 25.0%
! AATAATACTCTTGTACCTAA+TGG - chr3_3:9965535-9965554 Msa0441550:CDS 25.0%
! ATAATACTCTTGTACCTAAT+GGG - chr3_3:9965536-9965555 Msa0441550:CDS 25.0%
! GAAAAAGACTAATACCAAAT+TGG + chr3_3:9965621-9965640 None:intergenic 25.0%
! AGCTTCTAAATGAAACATTT+CGG + chr3_3:9965950-9965969 None:intergenic 25.0%
! GAGTTATATTATTCAGTTGT+TGG - chr3_3:9966032-9966051 Msa0441550:intron 25.0%
! TATTATTCAGTTGTTGGAAT+TGG - chr3_3:9966038-9966057 Msa0441550:intron 25.0%
! TCAAAATCATAATCTATTGC+TGG - chr3_3:9966165-9966184 Msa0441550:intron 25.0%
! TTGTTATAAAAATCATCTGG+TGG + chr3_3:9966418-9966437 None:intergenic 25.0%
!! ACCAGATGATTTTTATAACA+AGG - chr3_3:9966417-9966436 Msa0441550:intron 25.0%
!! CCAGATGATTTTTATAACAA+GGG - chr3_3:9966418-9966437 Msa0441550:intron 25.0%
! GAACAAATATCTATTGTTTC+TGG - chr3_3:9966730-9966749 Msa0441550:CDS 25.0%
! GATATAACAATTTACAAGAG+TGG - chr3_3:9966903-9966922 Msa0441550:intron 25.0%
! TGACAACTTCATTAACATAT+TGG - chr3_3:9966996-9967015 Msa0441550:intron 25.0%
!! GAGTTTTGCTAAAAAGATTA+TGG - chr3_3:9967183-9967202 Msa0441550:intron 25.0%
! ATTGATAGATCAATCATCAA+CGG - chr3_3:9967607-9967626 Msa0441550:intron 25.0%
!! ACAATTGATTTCTTGGATTT+AGG - chr3_3:9967790-9967809 Msa0441550:intron 25.0%
!! GTAAGTGTTTCTTGAATTTT+CGG + chr3_3:9967835-9967854 None:intergenic 25.0%
! AAGAAACACTTACAATAAGT+GGG - chr3_3:9967842-9967861 Msa0441550:intron 25.0%
! AGTGCCATCTAATTAAAAAA+GGG + chr3_3:9968352-9968371 None:intergenic 25.0%
! TAGTGCCATCTAATTAAAAA+AGG + chr3_3:9968353-9968372 None:intergenic 25.0%
! ATGTAAAAGTTACAAGCATT+TGG - chr3_3:9968380-9968399 Msa0441550:intron 25.0%
! ACCTAATACATAAATACCTT+TGG - chr3_3:9968414-9968433 Msa0441550:intron 25.0%
!!! TCCAAAGGTATTTATGTATT+AGG + chr3_3:9968418-9968437 None:intergenic 25.0%
! TAATACATAAATACCTTTGG+AGG - chr3_3:9968417-9968436 Msa0441550:intron 25.0%
! AATACATAAATACCTTTGGA+GGG - chr3_3:9968418-9968437 Msa0441550:intron 25.0%
! GTTATAAATCTTCAATTCCT+AGG - chr3_3:9968469-9968488 Msa0441550:intron 25.0%
! TATAAATCTTCAATTCCTAG+GGG - chr3_3:9968471-9968490 Msa0441550:intron 25.0%
!! GTCTATTTTACCAATATAAC+AGG - chr3_3:9968510-9968529 Msa0441550:intron 25.0%
! AAAATAGACTTGTAACAAAC+GGG + chr3_3:9968771-9968790 None:intergenic 25.0%
! AAGTGTGATTAGTAATTTCT+TGG - chr3_3:9969215-9969234 Msa0441550:CDS 25.0%
TTTACTTGTGAGAATGAATG+TGG + chr3_3:9963590-9963609 None:intergenic 30.0%
!! TTTTCAACACTCTGTTTTTC+TGG - chr3_3:9963706-9963725 Msa0441550:three_prime_UTR 30.0%
ACAAGCTTAAAAGAACGAAA+TGG + chr3_3:9963825-9963844 None:intergenic 30.0%
CAGCAGAAACAAACAAAAAA+AGG + chr3_3:9963955-9963974 None:intergenic 30.0%
CATATAACAAAGTGAAACAG+AGG + chr3_3:9964072-9964091 None:intergenic 30.0%
GTTGAGATTGTATGTGTAAA+TGG - chr3_3:9964142-9964161 Msa0441550:intron 30.0%
!! TTTGATTCTGAGGTTGAAAA+AGG - chr3_3:9964165-9964184 Msa0441550:intron 30.0%
!! TTGATTCTGAGGTTGAAAAA+GGG - chr3_3:9964166-9964185 Msa0441550:intron 30.0%
GGGCACAAACAAAATAAAAT+TGG + chr3_3:9964429-9964448 None:intergenic 30.0%
TATGGTTAAATTCTGATTGC+AGG - chr3_3:9964656-9964675 Msa0441550:intron 30.0%
TTGCAGGTTATAGCTATAAA+TGG - chr3_3:9964672-9964691 Msa0441550:intron 30.0%
TGCAGGTTATAGCTATAAAT+GGG - chr3_3:9964673-9964692 Msa0441550:intron 30.0%
TTTGTAGTGACATTAATCAC+AGG + chr3_3:9964711-9964730 None:intergenic 30.0%
ATGAAGATCTTCTCATAACA+TGG - chr3_3:9964766-9964785 Msa0441550:intron 30.0%
AACACATACTATGTCACATT+CGG - chr3_3:9964969-9964988 Msa0441550:intron 30.0%
! TTTCAAGTGAAGGATCAAAT+AGG - chr3_3:9965166-9965185 Msa0441550:CDS 30.0%
TTCAAGTGAAGGATCAAATA+GGG - chr3_3:9965167-9965186 Msa0441550:CDS 30.0%
! TCCCTTTGTTATCAACAATA+GGG - chr3_3:9965243-9965262 Msa0441550:intron 30.0%
!! TCCCTATTGTTGATAACAAA+GGG + chr3_3:9965247-9965266 None:intergenic 30.0%
ATAATGAAAATTTCACCGTC+GGG + chr3_3:9965295-9965314 None:intergenic 30.0%
CATAATGAAAATTTCACCGT+CGG + chr3_3:9965296-9965315 None:intergenic 30.0%
TTAATGGCGATAATAATACC+TGG + chr3_3:9965589-9965608 None:intergenic 30.0%
!!! CAATTTTTCCACTGGTTTAT+TGG - chr3_3:9965735-9965754 Msa0441550:intron 30.0%
AAATTACTTTACAGAGAGTG+AGG + chr3_3:9965783-9965802 None:intergenic 30.0%
!!! TTTGAACCCTTTTTTTGAAC+AGG - chr3_3:9965896-9965915 Msa0441550:intron 30.0%
!!! TTGAACCCTTTTTTTGAACA+GGG - chr3_3:9965897-9965916 Msa0441550:intron 30.0%
TGAAACATTTCGGAAAATCA+AGG + chr3_3:9965940-9965959 None:intergenic 30.0%
GCTGACTATATCATATAGAA+TGG - chr3_3:9965967-9965986 Msa0441550:intron 30.0%
ATAACTCAAAAAGTAGTCTG+TGG + chr3_3:9966019-9966038 None:intergenic 30.0%
TAGTTGAAATTCCCACATTA+TGG + chr3_3:9966129-9966148 None:intergenic 30.0%
GGTTTGTGAATGAATCATTA+TGG - chr3_3:9966320-9966339 Msa0441550:intron 30.0%
TTTACACTACTCAAATTCCA+AGG - chr3_3:9966366-9966385 Msa0441550:intron 30.0%
TTACACTACTCAAATTCCAA+GGG - chr3_3:9966367-9966386 Msa0441550:intron 30.0%
TTATAAAAATCATCTGGTGG+TGG + chr3_3:9966415-9966434 None:intergenic 30.0%
! CCCTTGTTATAAAAATCATC+TGG + chr3_3:9966421-9966440 None:intergenic 30.0%
TGGTCAAATAATGGCTATAT+CGG - chr3_3:9966776-9966795 Msa0441550:CDS 30.0%
! TTGATCAAACTGCAATTTTC+TGG - chr3_3:9966826-9966845 Msa0441550:CDS 30.0%
TTAGTTGATTAACCTCACAA+GGG + chr3_3:9966942-9966961 None:intergenic 30.0%
TGATAACAAATTTCCTTGTG+AGG - chr3_3:9966972-9966991 Msa0441550:intron 30.0%
TTAAATAGGCAACGAAATAG+CGG - chr3_3:9967060-9967079 Msa0441550:intron 30.0%
ATGATTGATCTATCAATCAC+TGG + chr3_3:9967604-9967623 None:intergenic 30.0%
ATCATCAACGGTACATATAA+AGG - chr3_3:9967619-9967638 Msa0441550:intron 30.0%
TCATCAACGGTACATATAAA+GGG - chr3_3:9967620-9967639 Msa0441550:intron 30.0%
TTCAAAACTTTCATCTGGAT+GGG - chr3_3:9967680-9967699 Msa0441550:CDS 30.0%
TAGTAAGAAGAGAAAGTGAA+AGG + chr3_3:9967739-9967758 None:intergenic 30.0%
TTGATTTCTTGGATTTAGGA+TGG - chr3_3:9967794-9967813 Msa0441550:intron 30.0%
CAAGAAACACTTACAATAAG+TGG - chr3_3:9967841-9967860 Msa0441550:intron 30.0%
TTTACTAAGGACATGTTTCA+TGG - chr3_3:9967964-9967983 Msa0441550:intron 30.0%
!!! TGGTTTTAAAAGAGTTCCTT+AGG - chr3_3:9967984-9968003 Msa0441550:intron 30.0%
!!! GTTGCCCTTTTTTAATTAGA+TGG - chr3_3:9968345-9968364 Msa0441550:intron 30.0%
CCAGAAAATGTTCTATATTG+CGG - chr3_3:9968688-9968707 Msa0441550:intron 30.0%
!! ACTTTTGTTTGTATTGGAGA+GGG + chr3_3:9968714-9968733 None:intergenic 30.0%
!! TACTTTTGTTTGTATTGGAG+AGG + chr3_3:9968715-9968734 None:intergenic 30.0%
!!! GAGGTTACTTTTGTTTGTAT+TGG + chr3_3:9968720-9968739 None:intergenic 30.0%
! TCACATCTAGTTAAAGCTTT+TGG - chr3_3:9969147-9969166 Msa0441550:intron 30.0%
ATTAGTAATTTCTTGGTCTG+AGG - chr3_3:9969222-9969241 Msa0441550:CDS 30.0%
! CTTACTTTGTACACATTTTC+TGG - chr3_3:9969280-9969299 Msa0441550:CDS 30.0%
! AAAAGTTTTGCTTGTTCCAT+TGG - chr3_3:9969423-9969442 Msa0441550:five_prime_UTR 30.0%
TTGAAAACAGAGCAATGTTG+AGG + chr3_3:9963693-9963712 None:intergenic 35.0%
TGAAGTTCTGTGTAAACAGT+TGG + chr3_3:9963736-9963755 None:intergenic 35.0%
TGGAATCAGAAAAGCAAAGA+AGG + chr3_3:9963805-9963824 None:intergenic 35.0%
!! TTGTTTGTTTCTGCTGAAAG+TGG - chr3_3:9963959-9963978 Msa0441550:intron 35.0%
GTGTAAATGGTTTGATTCTG+AGG - chr3_3:9964155-9964174 Msa0441550:intron 35.0%
! GTTTGTGATTTTGTGACTGA+TGG - chr3_3:9964341-9964360 Msa0441550:CDS 35.0%
GCTATAAATGGGAAATTTCC+TGG - chr3_3:9964684-9964703 Msa0441550:intron 35.0%
TGTCACTACAAATAACCATG+TGG - chr3_3:9964719-9964738 Msa0441550:intron 35.0%
TATACACATTCACTACCACA+TGG + chr3_3:9964737-9964756 None:intergenic 35.0%
AGTGAATGTGTATAATCAGC+TGG - chr3_3:9964743-9964762 Msa0441550:intron 35.0%
AAAAATGTTTATTGCAGGCC+TGG - chr3_3:9965058-9965077 Msa0441550:intron 35.0%
ATTGTCCAATTCCTTCGAAA+TGG - chr3_3:9965128-9965147 Msa0441550:CDS 35.0%
CAATTCCATTTCGAAGGAAT+TGG + chr3_3:9965136-9965155 None:intergenic 35.0%
CAATTCCTTCGAAATGGAAT+TGG - chr3_3:9965134-9965153 Msa0441550:CDS 35.0%
! CTCTTTGGAAATTAGTGGAA+GGG + chr3_3:9965207-9965226 None:intergenic 35.0%
! AGAAGCTCTTTGGAAATTAG+TGG + chr3_3:9965212-9965231 None:intergenic 35.0%
ACTAATTTCCAAAGAGCTTC+TGG - chr3_3:9965211-9965230 Msa0441550:intron 35.0%
! GTCCCTTTGTTATCAACAAT+AGG - chr3_3:9965242-9965261 Msa0441550:intron 35.0%
!! CTCCCTATTGTTGATAACAA+AGG + chr3_3:9965248-9965267 None:intergenic 35.0%
TTGGTATACTCAAGACTACA+CGG - chr3_3:9965324-9965343 Msa0441550:CDS 35.0%
CAGATGGTGTTCTTATCAAT+GGG - chr3_3:9965494-9965513 Msa0441550:CDS 35.0%
GTTTCATGATCTATCCCATT+AGG + chr3_3:9965553-9965572 None:intergenic 35.0%
GAAACAATTAACGTTGATCC+AGG - chr3_3:9965568-9965587 Msa0441550:CDS 35.0%
CCAGTGGAAAAATTGAAAGT+GGG + chr3_3:9965730-9965749 None:intergenic 35.0%
ACCAGTGGAAAAATTGAAAG+TGG + chr3_3:9965731-9965750 None:intergenic 35.0%
AACTCAAACCAATAAACCAG+TGG + chr3_3:9965746-9965765 None:intergenic 35.0%
TATTGCTGGTAGAAACTGAA+GGG - chr3_3:9966179-9966198 Msa0441550:intron 35.0%
ACCAACTTTGATATTCATGC+TGG - chr3_3:9966226-9966245 Msa0441550:intron 35.0%
GAATGAATCATTATGGCAGA+AGG - chr3_3:9966327-9966346 Msa0441550:intron 35.0%
!! TGAACCAAGCAAAAAGTATC+AGG - chr3_3:9966449-9966468 Msa0441550:intron 35.0%
!! CAAACCTGATACTTTTTGCT+TGG + chr3_3:9966456-9966475 None:intergenic 35.0%
CTTAGAATCTGATGTCATAG+AGG - chr3_3:9966479-9966498 Msa0441550:intron 35.0%
TCATAGAGGATTATATCGCA+TGG - chr3_3:9966493-9966512 Msa0441550:intron 35.0%
! TCCAAGTTAAGTGCAGTTTT+AGG - chr3_3:9966609-9966628 Msa0441550:CDS 35.0%
TCCTAAAACTGCACTTAACT+TGG + chr3_3:9966613-9966632 None:intergenic 35.0%
ATTGTTTGCAAATGTCAGTG+AGG - chr3_3:9966643-9966662 Msa0441550:CDS 35.0%
! TAGACTATAGTTCTATAGCG+TGG - chr3_3:9966699-9966718 Msa0441550:CDS 35.0%
!!! TAATTCAGTTTTGGCTAACG+CGG + chr3_3:9966855-9966874 None:intergenic 35.0%
TTATATCCGTAACGCAAAGT+AGG + chr3_3:9966890-9966909 None:intergenic 35.0%
TGATAACAAATTCCCTTGTG+AGG - chr3_3:9966927-9966946 Msa0441550:intron 35.0%
GTTAGTTGATTAACCTCACA+AGG + chr3_3:9966943-9966962 None:intergenic 35.0%
TTTAACAACACTGCTGCAAA+AGG + chr3_3:9967045-9967064 None:intergenic 35.0%
! TTGCAGCAGTGTTGTTAAAT+AGG - chr3_3:9967046-9967065 Msa0441550:intron 35.0%
! TAATGACTCGGAATGATCAA+GGG - chr3_3:9967226-9967245 Msa0441550:intron 35.0%
TTTACATCATGATGCTGAGT+AGG - chr3_3:9967335-9967354 Msa0441550:intron 35.0%
!!! CAGATGAAAGTTTTGAACAG+AGG + chr3_3:9967677-9967696 None:intergenic 35.0%
CTCTGTTCAAAACTTTCATC+TGG - chr3_3:9967675-9967694 Msa0441550:CDS 35.0%
GTTCAAAACTTTCATCTGGA+TGG - chr3_3:9967679-9967698 Msa0441550:CDS 35.0%
TTCTTACCCAACAACGAAAA+AGG + chr3_3:9967710-9967729 None:intergenic 35.0%
! AATTTAGGGCCTGTTTACTA+AGG - chr3_3:9967951-9967970 Msa0441550:intron 35.0%
GAAACATGTCCTTAGTAAAC+AGG + chr3_3:9967963-9967982 None:intergenic 35.0%
TTAATTAGATGGCACTACTG+AGG - chr3_3:9968095-9968114 Msa0441550:intron 35.0%
TAATTAGATGGCACTACTGA+GGG - chr3_3:9968096-9968115 Msa0441550:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr3_3:9968193-9968212 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr3_3:9968192-9968211 Msa0441550:intron 35.0%
CTAATTAAAAAAGGGCAACC+CGG + chr3_3:9968344-9968363 None:intergenic 35.0%
TTGTAAAATACTCCCTCCAA+AGG + chr3_3:9968433-9968452 None:intergenic 35.0%
CCAGGAAAAACCTGTTATAT+TGG + chr3_3:9968523-9968542 None:intergenic 35.0%
! CCAATATAACAGGTTTTTCC+TGG - chr3_3:9968520-9968539 Msa0441550:intron 35.0%
GAATCTGAGAGCAGAAAATT+TGG - chr3_3:9968588-9968607 Msa0441550:intron 35.0%
TCAGATAAGTTTCTTGACCT+AGG + chr3_3:9968624-9968643 None:intergenic 35.0%
TAGGTCAAGAAACTTATCTG+AGG - chr3_3:9968623-9968642 Msa0441550:intron 35.0%
! CCGCAATATAGAACATTTTC+TGG + chr3_3:9968691-9968710 None:intergenic 35.0%
ACTGTCAATGGAAAAATGAG+AGG + chr3_3:9968739-9968758 None:intergenic 35.0%
! AAACGAGTATCTCTTTTGAG+TGG - chr3_3:9968870-9968889 Msa0441550:intron 35.0%
! TTCCTTTTCACATTGCTCAT+GGG - chr3_3:9969110-9969129 Msa0441550:intron 35.0%
! CATCTAGTTAAAGCTTTTGG+CGG - chr3_3:9969150-9969169 Msa0441550:intron 35.0%
TACTAATCACACTTCTTGAC+AGG + chr3_3:9969209-9969228 None:intergenic 35.0%
!! ACAAGCAAAACTTTTGACTC+AGG + chr3_3:9969418-9969437 None:intergenic 35.0%
! AGCAAAGAAGGAACCTTTTG+AGG + chr3_3:9963793-9963812 None:intergenic 40.0%
!! TCATCTGGGTCGTTTTCTTT+TGG - chr3_3:9963849-9963868 Msa0441550:CDS 40.0%
! TGTGATTTTGTGACTGATGG+TGG - chr3_3:9964344-9964363 Msa0441550:CDS 40.0%
!! CTTGGCTTGTGTGATTTCAA+TGG - chr3_3:9964368-9964387 Msa0441550:CDS 40.0%
!! TATAGTTTTGCCACCTACTG+TGG - chr3_3:9964554-9964573 Msa0441550:intron 40.0%
ATTCCGATTCATACCACAGT+AGG + chr3_3:9964570-9964589 None:intergenic 40.0%
ACATACTATGTCACATTCGG+TGG - chr3_3:9964972-9964991 Msa0441550:intron 40.0%
TACGTCCAATTCCATTTCGA+AGG + chr3_3:9965142-9965161 None:intergenic 40.0%
! GACGTATCAGTTTCAAGTGA+AGG - chr3_3:9965156-9965175 Msa0441550:CDS 40.0%
! GCTCTTTGGAAATTAGTGGA+AGG + chr3_3:9965208-9965227 None:intergenic 40.0%
AATTTCCAAAGAGCTTCTGG+TGG - chr3_3:9965214-9965233 Msa0441550:intron 40.0%
!! GCTCTAAGATCAACACTTGA+CGG - chr3_3:9965451-9965470 Msa0441550:CDS 40.0%
AAAGACCTTGGAATACCAGA+TGG - chr3_3:9965478-9965497 Msa0441550:CDS 40.0%
CCATTGATAAGAACACCATC+TGG + chr3_3:9965496-9965515 None:intergenic 40.0%
CCAGATGGTGTTCTTATCAA+TGG - chr3_3:9965493-9965512 Msa0441550:CDS 40.0%
TGGTGTTCTTATCAATGGGA+AGG - chr3_3:9965498-9965517 Msa0441550:CDS 40.0%
GGTGTTCTTATCAATGGGAA+GGG - chr3_3:9965499-9965518 Msa0441550:CDS 40.0%
GGAAAAATTGAAAGTGGGTG+TGG + chr3_3:9965725-9965744 None:intergenic 40.0%
! CCCACTTTCAATTTTTCCAC+TGG - chr3_3:9965727-9965746 Msa0441550:intron 40.0%
TGATGTTCTCACAGAAAGCA+CGG + chr3_3:9965873-9965892 None:intergenic 40.0%
GGGTTCCCTGTTCAAAAAAA+GGG + chr3_3:9965905-9965924 None:intergenic 40.0%
AGGGTTCCCTGTTCAAAAAA+AGG + chr3_3:9965906-9965925 None:intergenic 40.0%
GGAACAGTTTGAATTCTGAC+TGG - chr3_3:9966059-9966078 Msa0441550:intron 40.0%
CCACATTATGGACACGAATT+CGG + chr3_3:9966117-9966136 None:intergenic 40.0%
CGAATTCGTGTCCATAATGT+GGG - chr3_3:9966115-9966134 Msa0441550:intron 40.0%
CTATTGCTGGTAGAAACTGA+AGG - chr3_3:9966178-9966197 Msa0441550:intron 40.0%
! GTTGGTGTAATTTGCCTGAT+CGG + chr3_3:9966212-9966231 None:intergenic 40.0%
GCCAGCATGAATATCAAAGT+TGG + chr3_3:9966230-9966249 None:intergenic 40.0%
AAAGCAGAAAAGAGTAGGAC+TGG + chr3_3:9966252-9966271 None:intergenic 40.0%
ACTATATTGTTGCAAGTGCG+AGG - chr3_3:9966299-9966318 Msa0441550:intron 40.0%
TCATTATGGCAGAAGGTTAC+AGG - chr3_3:9966334-9966353 Msa0441550:intron 40.0%
!! TAAAAATCATCTGGTGGTGG+TGG + chr3_3:9966412-9966431 None:intergenic 40.0%
GCTATATCGGAGCTATAGTA+TGG - chr3_3:9966789-9966808 Msa0441550:CDS 40.0%
CCTATACCTACTTTGCGTTA+CGG - chr3_3:9966881-9966900 Msa0441550:CDS 40.0%
ATGAAGTTGTCAACCTCACA+AGG + chr3_3:9966988-9967007 None:intergenic 40.0%
AGTTAAGTGACAACTCACGT+TGG - chr3_3:9967132-9967151 Msa0441550:intron 40.0%
! CTAATGACTCGGAATGATCA+AGG - chr3_3:9967225-9967244 Msa0441550:intron 40.0%
! TGATGTTTTCCCTTATCAGC+TGG - chr3_3:9967296-9967315 Msa0441550:intron 40.0%
GCATATTAGCCAGCTGATAA+GGG + chr3_3:9967308-9967327 None:intergenic 40.0%
TGCATATTAGCCAGCTGATA+AGG + chr3_3:9967309-9967328 None:intergenic 40.0%
CTTGTTAAAGGTTACAGCAC+CGG - chr3_3:9967438-9967457 Msa0441550:CDS 40.0%
ACAACTCGAGCTGCAATTAA+CGG - chr3_3:9967475-9967494 Msa0441550:CDS 40.0%
TAAAACCTGACGTTCCGTTT+CGG - chr3_3:9967509-9967528 Msa0441550:CDS 40.0%
ATCACTGGTGTTCTGTTCAT+CGG + chr3_3:9967589-9967608 None:intergenic 40.0%
!! GGTACTCCTTTTTCGTTGTT+GGG - chr3_3:9967701-9967720 Msa0441550:CDS 40.0%
!! CTTGGATTTAGGATGGACTA+TGG - chr3_3:9967801-9967820 Msa0441550:intron 40.0%
CATGTTAGCAAGCTTATGCA+TGG - chr3_3:9968027-9968046 Msa0441550:intron 40.0%
AATTAGATGGCACTACTGAG+GGG - chr3_3:9968097-9968116 Msa0441550:intron 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr3_3:9968142-9968161 Msa0441550:intron 40.0%
ACTGCCTCTTGTGTAAAAAC+AGG - chr3_3:9968186-9968205 Msa0441550:intron 40.0%
CTGCCTCTTGTGTAAAAACA+GGG - chr3_3:9968187-9968206 Msa0441550:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_3:9968218-9968237 Msa0441550:CDS 40.0%
AATGATTGATTGAGTCCCCT+AGG + chr3_3:9968489-9968508 None:intergenic 40.0%
CTCTAGACAATGTTGGATCA+TGG - chr3_3:9968566-9968585 Msa0441550:intron 40.0%
TGAGAGCAGAAAATTTGGAC+AGG - chr3_3:9968593-9968612 Msa0441550:intron 40.0%
ATTGTCAATCCTGAAGAAGC+CGG - chr3_3:9968646-9968665 Msa0441550:intron 40.0%
GGGTACAAAAACACTGTCAA+TGG + chr3_3:9968751-9968770 None:intergenic 40.0%
! GCAGATTCTACTTTGAGAAG+TGG - chr3_3:9969086-9969105 Msa0441550:intron 40.0%
! CTTCCTTTTCACATTGCTCA+TGG - chr3_3:9969109-9969128 Msa0441550:intron 40.0%
TTCCCATGAGCAATGTGAAA+AGG + chr3_3:9969115-9969134 None:intergenic 40.0%
!! TCCTCTTGGTGTTCCTCAAA+AGG - chr3_3:9963777-9963796 Msa0441550:three_prime_UTR 45.0%
!! ACCTTTTGAGGAACACCAAG+AGG + chr3_3:9963781-9963800 None:intergenic 45.0%
!! TTTGTGACTGATGGTGGACT+TGG - chr3_3:9964350-9964369 Msa0441550:CDS 45.0%
CCACCTACTGTGGTATGAAT+CGG - chr3_3:9964564-9964583 Msa0441550:intron 45.0%
GTGACATTAATCACAGGTCC+AGG + chr3_3:9964705-9964724 None:intergenic 45.0%
ATGTTTACTGCGGTGTCCTT+TGG - chr3_3:9964879-9964898 Msa0441550:intron 45.0%
TTCAAATGCGGCGTAACTCA+TGG - chr3_3:9965083-9965102 Msa0441550:intron 45.0%
CAAATCCACCAGAAGCTCTT+TGG + chr3_3:9965222-9965241 None:intergenic 45.0%
!! CAAAGAGCTTCTGGTGGATT+TGG - chr3_3:9965220-9965239 Msa0441550:intron 45.0%
CTAAGATCAACACTTGACGG+TGG - chr3_3:9965454-9965473 Msa0441550:CDS 45.0%
GAACACCATCTGGTATTCCA+AGG + chr3_3:9965486-9965505 None:intergenic 45.0%
TGTACGCTGTATGTAGGCAT+TGG + chr3_3:9965702-9965721 None:intergenic 45.0%
CCGAATTCGTGTCCATAATG+TGG - chr3_3:9966114-9966133 Msa0441550:intron 45.0%
!! TGAAGGGTATTACACCGATC+AGG - chr3_3:9966195-9966214 Msa0441550:intron 45.0%
GGTGGAAAGCAGAAAAGAGT+AGG + chr3_3:9966257-9966276 None:intergenic 45.0%
CACTACTCAAATTCCAAGGG+TGG - chr3_3:9966370-9966389 Msa0441550:intron 45.0%
GCTATAGTATGGCTGCATAG+CGG - chr3_3:9966800-9966819 Msa0441550:CDS 45.0%
CCGTAACGCAAAGTAGGTAT+AGG + chr3_3:9966884-9966903 None:intergenic 45.0%
! TGACAACTCACGTTGGTTGA+TGG - chr3_3:9967139-9967158 Msa0441550:intron 45.0%
AGGCTAAACACATCTGCAAG+TGG - chr3_3:9967355-9967374 Msa0441550:intron 45.0%
TTGTTGTCAGCAAGCCGAAA+CGG + chr3_3:9967526-9967545 None:intergenic 45.0%
GCTGACAACAATCAGCTAAG+AGG - chr3_3:9967535-9967554 Msa0441550:intron 45.0%
!! GGGTACTCCTTTTTCGTTGT+TGG - chr3_3:9967700-9967719 Msa0441550:CDS 45.0%
!! TTAGGATGGACTATGGCGAT+TGG - chr3_3:9967808-9967827 Msa0441550:intron 45.0%
AATATCTCGCAGCACAACTC+AGG - chr3_3:9967869-9967888 Msa0441550:intron 45.0%
GTTAGCAAGCTTATGCATGG+AGG - chr3_3:9968030-9968049 Msa0441550:intron 45.0%
GTCATGTGACTGTAAGGTCA+CGG - chr3_3:9968148-9968167 Msa0441550:intron 45.0%
TCATGTGACTGTAAGGTCAC+GGG - chr3_3:9968149-9968168 Msa0441550:intron 45.0%
TTACACAAGAGGCAGTTTCC+AGG + chr3_3:9968182-9968201 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_3:9968214-9968233 Msa0441550:intron 45.0%
GCGTACAATACACCAAATGG+TGG - chr3_3:9968217-9968236 Msa0441550:CDS 45.0%
CAACATTGTCTAGAGACACC+AGG + chr3_3:9968561-9968580 None:intergenic 45.0%
CTGGTGTCTCTAGACAATGT+TGG - chr3_3:9968559-9968578 Msa0441550:intron 45.0%
GAGCAGAAAATTTGGACAGG+TGG - chr3_3:9968596-9968615 Msa0441550:intron 45.0%
AATTTGGACAGGTGGTACCT+AGG - chr3_3:9968604-9968623 Msa0441550:intron 45.0%
!! ATTTTCTGGTGCACCAGTCT+CGG + chr3_3:9968677-9968696 None:intergenic 45.0%
!!! GATTATAAATTAAATTTTAA+TGG - chr3_3:9964528-9964547 Msa0441550:intron 5.0%
!! AATATATAATAAAATGAAAT+AGG + chr3_3:9966583-9966602 None:intergenic 5.0%
AACACCAAGAGGAGAAGCAG+TGG + chr3_3:9963770-9963789 None:intergenic 50.0%
CCGATTCATACCACAGTAGG+TGG + chr3_3:9964567-9964586 None:intergenic 50.0%
TTACGCCGCATTTGAACACC+AGG + chr3_3:9965079-9965098 None:intergenic 50.0%
TCATGGCAGGATGGAGTTCT+TGG - chr3_3:9965100-9965119 Msa0441550:intron 50.0%
CTTGACGGTGGAAAAGACCT+TGG - chr3_3:9965466-9965485 Msa0441550:CDS 50.0%
GTGTGGTGTACGCTGTATGT+AGG + chr3_3:9965708-9965727 None:intergenic 50.0%
AGTAGTCTGTACTCGCGTTC+TGG + chr3_3:9966282-9966301 None:intergenic 50.0%
! AATTCCAAGGGTGGAGCATC+TGG - chr3_3:9966379-9966398 Msa0441550:intron 50.0%
CTAACCCTCAAGGGTCCTTT+CGG - chr3_3:9967386-9967405 Msa0441550:intron 50.0%
CTTGATTGAGCCGTACCGAA+AGG + chr3_3:9967404-9967423 None:intergenic 50.0%
! GTTAAAGGTTACAGCACCGG+TGG - chr3_3:9967441-9967460 Msa0441550:CDS 50.0%
!! GTTCTGTTCATCGGCTTGCT+GGG + chr3_3:9967580-9967599 None:intergenic 50.0%
!! TGTTCTGTTCATCGGCTTGC+TGG + chr3_3:9967581-9967600 None:intergenic 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3_3:9968126-9968145 None:intergenic 50.0%
TCCACCACTGCTTCTCCTCT+TGG - chr3_3:9963763-9963782 Msa0441550:three_prime_UTR 55.0%
ACCAAGAGGAGAAGCAGTGG+TGG + chr3_3:9963767-9963786 None:intergenic 55.0%
GCAGGCCTGGTGTTCAAATG+CGG - chr3_3:9965071-9965090 Msa0441550:intron 55.0%
AATGCGGCGTAACTCATGGC+AGG - chr3_3:9965087-9965106 Msa0441550:intron 55.0%
! ATTCCTTTTGCGCAGCCCGA+CGG - chr3_3:9965277-9965296 Msa0441550:intron 55.0%
GTCTGTACTCGCGTTCTGGT+CGG + chr3_3:9966278-9966297 None:intergenic 55.0%
GAGCTCGTCCTAACCCTCAA+GGG - chr3_3:9967377-9967396 Msa0441550:intron 55.0%
CGAAAGGACCCTTGAGGGTT+AGG + chr3_3:9967388-9967407 None:intergenic 55.0%
CGTACCGAAAGGACCCTTGA+GGG + chr3_3:9967393-9967412 None:intergenic 55.0%
CCTCAAGGGTCCTTTCGGTA+CGG - chr3_3:9967391-9967410 Msa0441550:intron 55.0%
GCACTACTGAGGGGTAACCT+TGG - chr3_3:9968106-9968125 Msa0441550:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr3_3:9968161-9968180 Msa0441550:intron 55.0%
!!! TGCACCGGGTTGCCCTTTTT+TGG - chr3_3:9968277-9968296 Msa0441550:CDS 55.0%
!!! GCACCGGGTTGCCCTTTTTT+GGG - chr3_3:9968278-9968297 Msa0441550:CDS 55.0%
GGTCCCAAAAAAGGGCAACC+CGG + chr3_3:9968284-9968303 None:intergenic 55.0%
CGGGAAGGGGTCCCAAAAAA+GGG + chr3_3:9968292-9968311 None:intergenic 55.0%
!!! CCTTTTTTGGGACCCCTTCC+CGG - chr3_3:9968290-9968309 Msa0441550:CDS 55.0%
CGGCGTAACTCATGGCAGGA+TGG - chr3_3:9965091-9965110 Msa0441550:intron 60.0%
TGTACTCGCGTTCTGGTCGG+TGG + chr3_3:9966275-9966294 None:intergenic 60.0%
AGGACCAGATGCTCCACCCT+TGG + chr3_3:9966386-9966405 None:intergenic 60.0%
!! TCATCTGGTGGTGGTGGCAG+AGG + chr3_3:9966406-9966425 None:intergenic 60.0%
GGAGCTCGTCCTAACCCTCA+AGG - chr3_3:9967376-9967395 Msa0441550:intron 60.0%
CCGTACCGAAAGGACCCTTG+AGG + chr3_3:9967394-9967413 None:intergenic 60.0%
!! ACAGCACCGGTGGCGATCAA+CGG - chr3_3:9967451-9967470 Msa0441550:CDS 60.0%
! GTTGTGCCGTTGATCGCCAC+CGG + chr3_3:9967460-9967479 None:intergenic 60.0%
GCAAGCCGAAACGGAACGTC+AGG + chr3_3:9967517-9967536 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr3_3:9968115-9968134 Msa0441550:intron 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3_3:9968230-9968249 Msa0441550:CDS 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr3_3:9968257-9968276 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr3_3:9968258-9968277 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3_3:9968262-9968281 Msa0441550:CDS 60.0%
CCGGGAAGGGGTCCCAAAAA+AGG + chr3_3:9968293-9968312 None:intergenic 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr3_3:9968257-9968276 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr3_3:9968258-9968277 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3_3:9968262-9968281 Msa0441550:CDS 60.0%
TCACCGTCGGGCTGCGCAAA+AGG + chr3_3:9965283-9965302 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3_3:9968232-9968251 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_3:9968245-9968264 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_3:9968246-9968265 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_3:9968245-9968264 Msa0441550:CDS 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_3:9968246-9968265 Msa0441550:CDS 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3_3:9968263-9968282 Msa0441550:CDS 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_3:9968245-9968264 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_3:9968246-9968265 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_3:9968245-9968264 Msa0441550:CDS 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_3:9968246-9968265 Msa0441550:CDS 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3_3:9968263-9968282 Msa0441550:CDS 65.0%
!! TCGGTGTCGCCGGCTTCTTC+AGG + chr3_3:9968658-9968677 None:intergenic 65.0%
!! TGCACCAGTCTCGGTGTCGC+CGG + chr3_3:9968668-9968687 None:intergenic 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_3:9968247-9968266 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_3:9968251-9968270 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_3:9968252-9968271 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_3:9968247-9968266 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_3:9968251-9968270 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_3:9968252-9968271 None:intergenic 70.0%
GAAGCCGGCGACACCGAGAC+TGG - chr3_3:9968661-9968680 Msa0441550:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 9963545 9969459 9963545 ID=Msa0441550;Name=Msa0441550
chr3_3 mRNA 9963545 9969459 9963545 ID=Msa0441550-mRNA-1;Parent=Msa0441550;Name=Msa0441550-mRNA-1;_AED=0.14;_eAED=0.14;_QI=87|0.88|0.9|1|0.77|0.7|10|299|528
chr3_3 exon 9963545 9963943 9963545 ID=Msa0441550-mRNA-1:exon:2117;Parent=Msa0441550-mRNA-1
chr3_3 exon 9964273 9964472 9964273 ID=Msa0441550-mRNA-1:exon:2116;Parent=Msa0441550-mRNA-1
chr3_3 exon 9965114 9965192 9965114 ID=Msa0441550-mRNA-1:exon:2115;Parent=Msa0441550-mRNA-1
chr3_3 exon 9965282 9965647 9965282 ID=Msa0441550-mRNA-1:exon:2114;Parent=Msa0441550-mRNA-1
chr3_3 exon 9966534 9966900 9966534 ID=Msa0441550-mRNA-1:exon:2113;Parent=Msa0441550-mRNA-1
chr3_3 exon 9967415 9967553 9967415 ID=Msa0441550-mRNA-1:exon:2112;Parent=Msa0441550-mRNA-1
chr3_3 exon 9967659 9967740 9967659 ID=Msa0441550-mRNA-1:exon:2111;Parent=Msa0441550-mRNA-1
chr3_3 exon 9968217 9968326 9968217 ID=Msa0441550-mRNA-1:exon:2110;Parent=Msa0441550-mRNA-1
chr3_3 exon 9969206 9969398 9969206 ID=Msa0441550-mRNA-1:exon:2109;Parent=Msa0441550-mRNA-1
chr3_3 exon 9969422 9969459 9969422 ID=Msa0441550-mRNA-1:exon:2108;Parent=Msa0441550-mRNA-1
chr3_3 five_prime_UTR 9969422 9969459 9969422 ID=Msa0441550-mRNA-1:five_prime_utr;Parent=Msa0441550-mRNA-1
chr3_3 five_prime_UTR 9969350 9969398 9969350 ID=Msa0441550-mRNA-1:five_prime_utr;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9969206 9969349 9969206 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9968217 9968326 9968217 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9967659 9967740 9967659 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9967415 9967553 9967415 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9966534 9966900 9966534 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9965282 9965647 9965282 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9965114 9965192 9965114 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9964273 9964472 9964273 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 CDS 9963844 9963943 9963844 ID=Msa0441550-mRNA-1:cds;Parent=Msa0441550-mRNA-1
chr3_3 three_prime_UTR 9963545 9963843 9963545 ID=Msa0441550-mRNA-1:three_prime_utr;Parent=Msa0441550-mRNA-1
Gene Sequence

>Msa0441550

ATGGGTCTCTTCAGATTCTCTCTCTGTTTTTTCATCCTCAACATTGCTCTGTTTTCAACACTCTGTTTTTCTGGTGATCCAACTGTTTACACAGAACTTCACGTCTCTTCCACCACTGCTTCTCCTCTTGGTGTTCCTCAAAAGGTTATAGCTATAAATGGGAAATTTCCTGGACCTGTGATTAATGTCACTACAAATAACCATGTGGTAGTGAATGTGTATAATCAGCTGGATGAAGATCTTCTCATAACATGGGAGATTATACAGATTCCTTTTGCGCAGCCCGACGGTGAAATTTTCATTATGATTGGTGATTGGTATACTCAAGACTACACGGCTCTAAGATCAACACTTGACGGTGGAAAAGACCTTGGAATACCAGATGGTGTTCTTATCAATGGGAAGGGACCTTATCAGTACAATAATACTCTTGTACCTAATGGGATAGATCATGAAACAATTAACGTTGATCCAGGCAAGACTTACCGAATTCGTGTCCATAATGTGGGAATTTCAACTACCTTAAACTTTCGAATTCAAAATCATAATCTATTGCTGGTAGAAACTGAAGGGTATTACACCGATCAGGCAAATTACACCAACTTTGATATTCATGCTGGCCAGTCCTACTCTTTTCTGCTTTCCACCGACCAGAACGCGAGTACAGACTACTATATTGTTGCAAGTGCGAGGTTTGTGAATGAATCATTATGGCAGAAGGTTACAGGTGTTGCTGTTTTACACTACTCAAATTCCAAGGGTGGAGCATCTGGTCCTCTGCCACCACCACCAGATGATTTTTATAACAAGGGCGCATCAATGAACCAAGCAAAAAGTATCAGGCTAAACACATCTGCAAGTGGAGCTCGTCCTAACCCTCAAGGGTCCTTTCGGTACGGCTCAATCAAGATTACTGATTTTTACTTGTTAAAGGTTACAGCACCGGTGGCGATCAACGGCACAACTCGAGCTGCAATTAACGGAATCTCATTTCTAAAACCTGACGTTCCGTTTCGGCTTGCTGACAACAATCAGCTAAGAGGAATTTATAAGCTTGATTTTCCCAGCAAGCCGATGAACAGAACACCAGTGATTGATAGATCAATCATCAACGGTACATATAAAGGGTTCATTGAGATTGTGTTGCAAAACAATGACTCCTCTGTTCAAAACTTTCATCTGGATGGGTACTCCTTTTTCGTTGTTGGGATGGACTATGGCGATTGGTCCGAAAATTCAAGAAACACTTACAATAAGTGGGATGCAATATCTCGCAGCACAACTCAGGTTTTTCCTGGAGCATGGACAGCAATCCTGGTGTCTCTAGACAATGTTGGATCATGGAATCTGAGAGCAGAAAATTTGGACAGGTGGTACCTAGGTCAAGAAACTTATCTGAGGATTGTCAATCCTGAAGAAGCCGGCGACACCGAGACTGGTGCACCAGAAAATGTTCTATATTGCGGCCCTCTCCAATACAAACAAAAAAAGCAGACACATTCTTCATCTTCTGCAGATTCTACTTTGAGAAGTGGCTTCCTTTTCACATTGCTCATGGGAATTCTTGTGATTTTCACATCTAGTTAA
Protein sequence

>Msa0441550

MGLFRFSLCFFILNIALFSTLCFSGDPTVYTELHVSSTTASPLGVPQKVIAINGKFPGPVINVTTNNHVVVNVYNQLDEDLLITWEIIQIPFAQPDGEIFIMIGDWYTQDYTALRSTLDGGKDLGIPDGVLINGKGPYQYNNTLVPNGIDHETINVDPGKTYRIRVHNVGISTTLNFRIQNHNLLLVETEGYYTDQANYTNFDIHAGQSYSFLLSTDQNASTDYYIVASARFVNESLWQKVTGVAVLHYSNSKGGASGPLPPPPDDFYNKGASMNQAKSIRLNTSASGARPNPQGSFRYGSIKITDFYLLKVTAPVAINGTTRAAINGISFLKPDVPFRLADNNQLRGIYKLDFPSKPMNRTPVIDRSIINGTYKGFIEIVLQNNDSSVQNFHLDGYSFFVVGMDYGDWSENSRNTYNKWDAISRSTTQVFPGAWTAILVSLDNVGSWNLRAENLDRWYLGQETYLRIVNPEEAGDTETGAPENVLYCGPLQYKQKKQTHSSSSADSTLRSGFLFTLLMGILVIFTSS*