AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1084960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084960 MtrunA17_Chr7g0245941 98.087 366 7 0 1 366 1 366 0.0 752
Msa1084960 MtrunA17_Chr1g0195781 92.896 366 26 0 1 366 1 366 0.0 723
Msa1084960 MtrunA17_Chr8g0351631 66.377 345 116 0 22 366 96 440 5.16e-174 491
Msa1084960 MtrunA17_Chr8g0351611 63.760 367 127 3 1 366 1 362 2.51e-167 471
Msa1084960 MtrunA17_Chr8g0351581 69.231 312 95 1 55 366 20 330 1.43e-163 460
Msa1084960 MtrunA17_Chr8g0351641 63.782 312 108 1 55 366 1 307 8.09e-148 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1084960 AT2G45440.1 74.317 366 93 1 1 366 1 365 0.0 573
Msa1084960 AT3G60880.2 73.497 366 96 1 1 366 1 365 0.0 560
Msa1084960 AT3G60880.1 73.497 366 95 2 1 366 1 364 0.0 557

Find 125 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCTTCTTTCATTTATTTA+AGG 0.102765 7_2:-85309297 None:intergenic
GGTGGGAATATTAAGGTTAT+TGG 0.186837 7_2:+85311591 Msa1084960:CDS
AAGGATAGAATTTGCCAATT+TGG 0.190236 7_2:+85312187 Msa1084960:CDS
GGTGGGTTTGTTTCTGTAAA+AGG 0.216160 7_2:-85312503 None:intergenic
ACCAATTTCCTTCACCAAAT+TGG 0.224725 7_2:-85312201 None:intergenic
GCCAATTTGGTGAAGGAAAT+TGG 0.226319 7_2:+85312200 Msa1084960:CDS
CGGTTAGTTGTTATTGGTTT+AGG 0.269335 7_2:+85312304 Msa1084960:three_prime_UTR
ATTAAGGTTATTGGAAATAC+TGG 0.273517 7_2:+85311600 Msa1084960:CDS
ATTTGGCGGTTAGTTGTTAT+TGG 0.292413 7_2:+85312298 Msa1084960:exon
TTGGTTAGTCGATATTAATT+TGG 0.295494 7_2:+85312281 Msa1084960:exon
GAAGACTGATGTGTGATTTA+TGG 0.299034 7_2:-85309358 None:intergenic
GCGCACACCGTCAACTGTTT+TGG 0.304655 7_2:+85311570 Msa1084960:CDS
CATTATTCAGGAACTCTTCC+TGG 0.320905 7_2:+85310771 Msa1084960:intron
AGCTGCTTGTGTAGGCTTCC+AGG 0.338802 7_2:-85310789 None:intergenic
GAAGAACAAGCTCTTGATTA+TGG 0.342274 7_2:+85312574 Msa1084960:three_prime_UTR
TTGTTTCTGTAAAAGGGTTT+AGG 0.349029 7_2:-85312496 None:intergenic
GCCATTTGTACCTCTCCCTT+TGG 0.355708 7_2:+85312160 Msa1084960:CDS
CACGATGCTAGATGGGGTTA+TGG 0.357163 7_2:+85311945 Msa1084960:CDS
TACCTCTCCCTTTGGAGAAA+AGG 0.366582 7_2:+85312168 Msa1084960:CDS
GTGAAGGCCAACTAATGAAC+TGG 0.368307 7_2:+85311526 Msa1084960:CDS
GTTGCAAGCAATTTGATTCC+AGG 0.371051 7_2:+85311987 Msa1084960:CDS
GTGTTCAAACCAATGGGATT+TGG 0.372649 7_2:-85312095 None:intergenic
AGCTCTTGCCTTTGATTGAC+TGG 0.378010 7_2:+85312060 Msa1084960:CDS
TAATGCGAGAGCTCATGTTT+GGG 0.389995 7_2:+85312012 Msa1084960:CDS
GTGGGTTTGTTTCTGTAAAA+GGG 0.390300 7_2:-85312502 None:intergenic
ACGATGCTAGATGGGGTTAT+GGG 0.392947 7_2:+85311946 Msa1084960:CDS
ATGAATGCCACGATGCTAGA+TGG 0.396310 7_2:+85311937 Msa1084960:CDS
TTGCTCAACTTGGAGTTGTC+AGG 0.401383 7_2:+85312123 Msa1084960:CDS
TTAATGCGAGAGCTCATGTT+TGG 0.404176 7_2:+85312011 Msa1084960:CDS
AACACGGCTCTTGCTCAACT+TGG 0.407658 7_2:+85312113 Msa1084960:CDS
GCTCTTCCCAGTTCATTAGT+TGG 0.415200 7_2:-85311533 None:intergenic
GGCTGGTGTCAAGGAATGTA+TGG 0.417544 7_2:+85311854 Msa1084960:CDS
GCTACATTCAAGACCTATAC+TGG 0.420080 7_2:+85309472 Msa1084960:CDS
TCATCTCATAACTACGCATT+GGG 0.424346 7_2:-85310832 None:intergenic
AGTTGCATGAATTGCTTCCC+TGG 0.424932 7_2:-85311634 None:intergenic
CTTCATATAAACCCTTACTA+TGG 0.428403 7_2:+85311690 Msa1084960:CDS
AGATGGGGTTATGGGGCTAC+TGG 0.429920 7_2:+85311954 Msa1084960:CDS
ACAAATGGCAGCCTGAAAAC+TGG 0.430651 7_2:-85312146 None:intergenic
GAAATGTGAGGGCGGCTGCC+AGG 0.431645 7_2:-85309330 None:intergenic
TTTCAAAGTGTGCTTTCCAT+GGG 0.435236 7_2:+85311744 Msa1084960:CDS
GGAGTTGAAGGTGTTATTGT+TGG 0.435948 7_2:+85311492 Msa1084960:CDS
AATTGTCAAACATAAATGTA+AGG 0.440991 7_2:-85312599 None:intergenic
GTTATTGTTGGTGGCACAAC+TGG 0.447799 7_2:+85311504 Msa1084960:CDS
GCTCAAAGTACTTGCTTGGC+TGG 0.459949 7_2:+85311837 Msa1084960:CDS
TCATTATAATAATGTTTCAC+TGG 0.461608 7_2:-85312553 None:intergenic
TCATATATAATGTGCCTTCA+CGG 0.466811 7_2:+85311775 Msa1084960:CDS
AGCAATTCATGCAACTGAGC+AGG 0.472668 7_2:+85311641 Msa1084960:CDS
CTTAGCTCAAAGTACTTGCT+TGG 0.473911 7_2:+85311833 Msa1084960:CDS
TTCATCTCATAACTACGCAT+TGG 0.474360 7_2:-85310833 None:intergenic
TATACTGGCGTATGCTTCAC+AGG 0.477913 7_2:+85309487 Msa1084960:CDS
CAAAACCTCCTTGGAAGGTA+TGG 0.482290 7_2:+85311713 Msa1084960:CDS
GTTGAAGGTGTTATTGTTGG+TGG 0.483414 7_2:+85311495 Msa1084960:CDS
GTTAGTCGATATTAATTTGG+CGG 0.484106 7_2:+85312284 Msa1084960:exon
TCAAGATCAAATCGACCGTC+AGG 0.487193 7_2:-85311432 None:intergenic
TTACTATGGCAAAACCTCCT+TGG 0.496884 7_2:+85311704 Msa1084960:CDS
TATAATGTGCCTTCACGGAC+TGG 0.501920 7_2:+85311780 Msa1084960:CDS
TTGTCAGTGGTAACATTGGA+AGG 0.502303 7_2:-85309529 None:intergenic
GTGAATATGCAGATTGAGAA+TGG 0.503509 7_2:+85311471 Msa1084960:CDS
GATTTCACAGCTGCTTGTGT+AGG 0.510543 7_2:-85310797 None:intergenic
AACCAATGGGATTTGGCATG+TGG 0.510972 7_2:-85312088 None:intergenic
TACTTGCTTGGCTGGTGTCA+AGG 0.511271 7_2:+85311845 Msa1084960:CDS
CACCTCTAAAATTGCATGGG+TGG 0.516088 7_2:-85312521 None:intergenic
AGGAATGTATGGGAAATGAC+AGG 0.516838 7_2:+85311865 Msa1084960:CDS
TGAAGAGTTGTTTATCATTG+TGG 0.518195 7_2:-85309385 None:intergenic
AAGAGCTTAGAATTCAATGT+AGG 0.522936 7_2:-85312044 None:intergenic
TGTTGGAACTGAAGACGTCC+AGG 0.522988 7_2:+85312235 Msa1084960:CDS
ACCTCTAAAATTGCATGGGT+GGG 0.523263 7_2:-85312520 None:intergenic
AAGAGCCGTGTTCAAACCAA+TGG 0.526094 7_2:-85312102 None:intergenic
ATGAGCTCTCGCATTAAACC+TGG 0.527824 7_2:-85312005 None:intergenic
AGAAGCACGTACAGTAGTCC+TGG 0.528524 7_2:+85309312 Msa1084960:five_prime_UTR
TCCAAAGGGAGAGGTACAAA+TGG 0.530348 7_2:-85312161 None:intergenic
ATTCCCACCAAAACAGTTGA+CGG 0.533028 7_2:-85311577 None:intergenic
AGAATTTGCCAATTTGGTGA+AGG 0.533742 7_2:+85312193 Msa1084960:CDS
AATCGACCGTCAGGTAGGTA+TGG 0.533788 7_2:-85311423 None:intergenic
GGCACATTATATATGATTGT+GGG 0.534618 7_2:-85311768 None:intergenic
TGTGAAGCATACGCCAGTAT+AGG 0.536807 7_2:-85309485 None:intergenic
AGGCACATTATATATGATTG+TGG 0.538234 7_2:-85311769 None:intergenic
AATGCGAGAGCTCATGTTTG+GGG 0.539435 7_2:+85312013 Msa1084960:CDS
TAGAAGTAGAAGAACGAAAA+CGG 0.543296 7_2:-85309434 None:intergenic
CAGATTGAGAATGGAGTTGA+AGG 0.544549 7_2:+85311480 Msa1084960:CDS
TTCCACATGCCAAATCCCAT+TGG 0.545798 7_2:+85312086 Msa1084960:CDS
TCTTGAATCATATGATGCCT+TGG 0.551015 7_2:+85311449 Msa1084960:CDS
TGAATGCCACGATGCTAGAT+GGG 0.551513 7_2:+85311938 Msa1084960:CDS
GCAATTCATGCAACTGAGCA+GGG 0.554140 7_2:+85311642 Msa1084960:CDS
AGTCGTCGTCATCAAGAACC+TGG 0.556999 7_2:-85312253 None:intergenic
TGTCCACCTCTAAAATTGCA+TGG 0.562045 7_2:-85312525 None:intergenic
TCTCAGACACTTTATGTCCT+CGG 0.562351 7_2:-85311379 None:intergenic
ATACTGGAAGCAACTCAACC+AGG 0.563622 7_2:+85311616 Msa1084960:CDS
ATGAGCAACCATACCTTCCA+AGG 0.567921 7_2:-85311721 None:intergenic
TATGGCAAAACCTCCTTGGA+AGG 0.570023 7_2:+85311708 Msa1084960:CDS
TGGAAAAGCCAGTCAATCAA+AGG 0.572095 7_2:-85312068 None:intergenic
AGAGCCGTGTTCAAACCAAT+GGG 0.577523 7_2:-85312101 None:intergenic
GTTTAGGCATATTTGAAACA+AGG 0.585800 7_2:-85312480 None:intergenic
GTCCACCTCTAAAATTGCAT+GGG 0.588951 7_2:-85312524 None:intergenic
ATAGAATTGCTGTGTGGAGT+GGG 0.595797 7_2:+85311907 Msa1084960:CDS
ACGCATTGGGAGGTGAGAAG+TGG 0.597263 7_2:-85310819 None:intergenic
ATTGTCAAACATAAATGTAA+GGG 0.598120 7_2:-85312598 None:intergenic
ATATATGATTGTGGGCCCCA+TGG 0.599404 7_2:-85311760 None:intergenic
CGATGCTAGATGGGGTTATG+GGG 0.609310 7_2:+85311947 Msa1084960:CDS
TTCAAAGTGTGCTTTCCATG+GGG 0.610187 7_2:+85311745 Msa1084960:CDS
TATTTACAGGACTTGTACCG+AGG 0.611279 7_2:+85311362 Msa1084960:intron
AAGGATACAATAAGTCTACA+AGG 0.613062 7_2:-85312330 None:intergenic
ATGCGAGAGCTCATGTTTGG+GGG 0.614814 7_2:+85312014 Msa1084960:CDS
AAATCCCATTGGTTTGAACA+CGG 0.620889 7_2:+85312097 Msa1084960:CDS
GGAAGGATGAAGCGGAAAAG+CGG 0.623856 7_2:-85309512 None:intergenic
TGAAGGCCAACTAATGAACT+GGG 0.625991 7_2:+85311527 Msa1084960:CDS
TACTGGAAGCAACTCAACCA+GGG 0.628120 7_2:+85311617 Msa1084960:CDS
AATAGAATTGCTGTGTGGAG+TGG 0.632726 7_2:+85311906 Msa1084960:CDS
TTATGGTCTCAGAAATGTGA+GGG 0.638325 7_2:-85309341 None:intergenic
CTCAATCTGCATATTCACCA+AGG 0.638337 7_2:-85311466 None:intergenic
GCTGGTGTCAAGGAATGTAT+GGG 0.645660 7_2:+85311855 Msa1084960:CDS
ATGTCTTGACCAGTCCGTGA+AGG 0.650374 7_2:-85311789 None:intergenic
GTTGGTGGCACAACTGGTGA+AGG 0.654935 7_2:+85311510 Msa1084960:CDS
GATCAAATCGACCGTCAGGT+AGG 0.655832 7_2:-85311428 None:intergenic
TCTCATAACTACGCATTGGG+AGG 0.661369 7_2:-85310829 None:intergenic
GGAATGTATGGGAAATGACA+GGG 0.665453 7_2:+85311866 Msa1084960:CDS
TTACCACTGACAAAACCACT+AGG 0.673289 7_2:+85309539 Msa1084960:CDS
AAAACTCCATACCTACCTGA+CGG 0.675250 7_2:+85311417 Msa1084960:CDS
GTAACATTGGAAGGATGAAG+CGG 0.682034 7_2:-85309520 None:intergenic
TGGTCTCAGAAATGTGAGGG+CGG 0.698944 7_2:-85309338 None:intergenic
AGCAACCATACCTTCCAAGG+AGG 0.704764 7_2:-85311718 None:intergenic
GAATGCCACGATGCTAGATG+GGG 0.719711 7_2:+85311939 Msa1084960:CDS
CATAACCCCATCTAGCATCG+TGG 0.731383 7_2:-85311944 None:intergenic
TTTATGGTCTCAGAAATGTG+AGG 0.742496 7_2:-85309342 None:intergenic
CTGATAATAGAATTGCTGTG+TGG 0.757477 7_2:+85311901 Msa1084960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAATTAAGATAAT+AGG + chr7_2:85310019-85310038 Msa1084960:intron 10.0%
!!! TTTTTTCAATTAAGATAATA+GGG + chr7_2:85310020-85310039 Msa1084960:intron 10.0%
!!! TTTTTTTAATTAAGATTGTA+AGG + chr7_2:85310323-85310342 Msa1084960:intron 10.0%
!!! TTTTTTAATTAAGATTGTAA+GGG + chr7_2:85310324-85310343 Msa1084960:intron 10.0%
!!! TTTTTCAATTAAGATAATAG+GGG + chr7_2:85310021-85310040 Msa1084960:intron 15.0%
!! ACATTAAACAAACAAAAAAT+TGG - chr7_2:85310737-85310756 None:intergenic 15.0%
!! TATTCTTTATATATATTGTG+TGG + chr7_2:85310959-85310978 Msa1084960:intron 15.0%
!! CTCTGTTTGATAAAAAATAT+CGG + chr7_2:85310139-85310158 Msa1084960:intron 20.0%
!!! ATAACTAAAAAAGGTTTGTT+TGG - chr7_2:85310463-85310482 None:intergenic 20.0%
!! TAAGCTTGTATAACTAAAAA+AGG - chr7_2:85310472-85310491 None:intergenic 20.0%
!!! TATTTTCTTTTTCTGCTATA+AGG + chr7_2:85310624-85310643 Msa1084960:intron 20.0%
!! TGGAAAATATAGAATTTAGT+AGG - chr7_2:85310909-85310928 None:intergenic 20.0%
!!! TTTACACATTGAACATATTT+TGG + chr7_2:85311127-85311146 Msa1084960:intron 20.0%
!!! TAAGGAGTATATTTAAAAAG+TGG + chr7_2:85311240-85311259 Msa1084960:intron 20.0%
!!! TTAATACTGATTTTGTGATA+CGG - chr7_2:85311327-85311346 None:intergenic 20.0%
!! AAGCTATATATTGTATTTAC+AGG + chr7_2:85311349-85311368 Msa1084960:intron 20.0%
!! TCATTATAATAATGTTTCAC+TGG - chr7_2:85312556-85312575 None:intergenic 20.0%
!! ATTGTCAAACATAAATGTAA+GGG - chr7_2:85312601-85312620 None:intergenic 20.0%
!! AATTGTCAAACATAAATGTA+AGG - chr7_2:85312602-85312621 None:intergenic 20.0%
! GTGCTTCTTTCATTTATTTA+AGG - chr7_2:85309300-85309319 None:intergenic 25.0%
!! GCTGATAATGATAAGTAAAA+TGG - chr7_2:85309575-85309594 None:intergenic 25.0%
!!! TGCGTTGATTTGTTAAAAAT+TGG + chr7_2:85309786-85309805 Msa1084960:intron 25.0%
!!! GAATTTCTTTTGTTGTTCAT+CGG + chr7_2:85309833-85309852 Msa1084960:intron 25.0%
!! GTAGTGTTTTGTAAAATTAG+CGG + chr7_2:85310242-85310261 Msa1084960:intron 25.0%
! AAGACATGTTTATGTATGTT+TGG - chr7_2:85310523-85310542 None:intergenic 25.0%
! CAAACAAAAAATTGGATTCA+TGG - chr7_2:85310729-85310748 None:intergenic 25.0%
! GTAGTTATGAGATGAAAAAT+AGG + chr7_2:85310840-85310859 Msa1084960:CDS 25.0%
! TTATGAGATGAAAAATAGGT+AGG + chr7_2:85310844-85310863 Msa1084960:intron 25.0%
! AGTAGGAAAACTAATGAATT+TGG - chr7_2:85310892-85310911 None:intergenic 25.0%
! AATGAGACGATTAAAACAAA+TGG - chr7_2:85310929-85310948 None:intergenic 25.0%
!!! TTTAATCGTCTCATTTTTTC+AGG + chr7_2:85310934-85310953 Msa1084960:intron 25.0%
! CAAAATCTCAAACTGAATAA+TGG - chr7_2:85311165-85311184 None:intergenic 25.0%
!!! TAATACTGATTTTGTGATAC+GGG - chr7_2:85311326-85311345 None:intergenic 25.0%
! ATTAAGGTTATTGGAAATAC+TGG + chr7_2:85311600-85311619 Msa1084960:CDS 25.0%
!! TTGGTTAGTCGATATTAATT+TGG + chr7_2:85312281-85312300 Msa1084960:exon 25.0%
!!! TGTCTTTTTAAGTTTCACAA+AGG - chr7_2:85312367-85312386 None:intergenic 25.0%
TGAAGAGTTGTTTATCATTG+TGG - chr7_2:85309388-85309407 None:intergenic 30.0%
TAGAAGTAGAAGAACGAAAA+CGG - chr7_2:85309437-85309456 None:intergenic 30.0%
! TTTTCGTTCTTCTACTTCTA+GGG + chr7_2:85309437-85309456 Msa1084960:five_prime_UTR 30.0%
!!! ACTTCTAGGGTTTTGATTTA+TGG + chr7_2:85309450-85309469 Msa1084960:exon 30.0%
AATGGAAAATTTGAACCTAG+TGG - chr7_2:85309557-85309576 None:intergenic 30.0%
TCGAATTTCGCAATTAGTAA+AGG - chr7_2:85309813-85309832 None:intergenic 30.0%
! CTGATTGAATTTTCAGTGTT+TGG + chr7_2:85309934-85309953 Msa1084960:intron 30.0%
ATGATAAGCTATGAGTTACT+TGG + chr7_2:85310062-85310081 Msa1084960:intron 30.0%
ATACACTTGTGAGAAAATGA+TGG + chr7_2:85310107-85310126 Msa1084960:intron 30.0%
TGAGAAAATGATGGTTACTA+AGG + chr7_2:85310116-85310135 Msa1084960:intron 30.0%
! ATAATCTAGCTTATAGCAGA+TGG + chr7_2:85310169-85310188 Msa1084960:intron 30.0%
!! AGCTAGTTTATAGTTGATAG+CGG + chr7_2:85310198-85310217 Msa1084960:intron 30.0%
AATGATGACACAACATATTG+GGG - chr7_2:85310594-85310613 None:intergenic 30.0%
CAATGATGACACAACATATT+GGG - chr7_2:85310595-85310614 None:intergenic 30.0%
TCAATGATGACACAACATAT+TGG - chr7_2:85310596-85310615 None:intergenic 30.0%
ATGTCTTATACTGTGTAGAT+TGG + chr7_2:85310984-85311003 Msa1084960:intron 30.0%
AATCTCAAACTGAATAATGG+AGG - chr7_2:85311162-85311181 None:intergenic 30.0%
CTTCATATAAACCCTTACTA+TGG + chr7_2:85311690-85311709 Msa1084960:CDS 30.0%
GGCACATTATATATGATTGT+GGG - chr7_2:85311771-85311790 None:intergenic 30.0%
AGGCACATTATATATGATTG+TGG - chr7_2:85311772-85311791 None:intergenic 30.0%
TCATATATAATGTGCCTTCA+CGG + chr7_2:85311775-85311794 Msa1084960:CDS 30.0%
AAGAGCTTAGAATTCAATGT+AGG - chr7_2:85312047-85312066 None:intergenic 30.0%
! ATTCTATCCTTTTCTCCAAA+GGG - chr7_2:85312178-85312197 None:intergenic 30.0%
! AATTCTATCCTTTTCTCCAA+AGG - chr7_2:85312179-85312198 None:intergenic 30.0%
AAGGATAGAATTTGCCAATT+TGG + chr7_2:85312187-85312206 Msa1084960:CDS 30.0%
! GTTAGTCGATATTAATTTGG+CGG + chr7_2:85312284-85312303 Msa1084960:exon 30.0%
AAGGATACAATAAGTCTACA+AGG - chr7_2:85312333-85312352 None:intergenic 30.0%
CACAAAGGAAAAAAACAGAA+AGG - chr7_2:85312352-85312371 None:intergenic 30.0%
! GTTTAGGCATATTTGAAACA+AGG - chr7_2:85312483-85312502 None:intergenic 30.0%
!! TTGTTTCTGTAAAAGGGTTT+AGG - chr7_2:85312499-85312518 None:intergenic 30.0%
TTATGGTCTCAGAAATGTGA+GGG - chr7_2:85309344-85309363 None:intergenic 35.0%
TTTATGGTCTCAGAAATGTG+AGG - chr7_2:85309345-85309364 None:intergenic 35.0%
GAAGACTGATGTGTGATTTA+TGG - chr7_2:85309361-85309380 None:intergenic 35.0%
! GTTTTCGTTCTTCTACTTCT+AGG + chr7_2:85309436-85309455 Msa1084960:five_prime_UTR 35.0%
CTTTATGAACATTGTCGATG+AGG + chr7_2:85309744-85309763 Msa1084960:intron 35.0%
!!! TTTGTTGTTCATCGGTTTTG+TGG + chr7_2:85309841-85309860 Msa1084960:intron 35.0%
!!! TTCATCGGTTTTGTGGTAAA+TGG + chr7_2:85309848-85309867 Msa1084960:intron 35.0%
AACGTTTGTCTGCATTATTC+AGG + chr7_2:85310759-85310778 Msa1084960:intron 35.0%
TCATCTCATAACTACGCATT+GGG - chr7_2:85310835-85310854 None:intergenic 35.0%
TTCATCTCATAACTACGCAT+TGG - chr7_2:85310836-85310855 None:intergenic 35.0%
TCTTATACTGTGTAGATTGG+AGG + chr7_2:85310987-85311006 Msa1084960:intron 35.0%
CTTATACTGTGTAGATTGGA+GGG + chr7_2:85310988-85311007 Msa1084960:intron 35.0%
AACCATAGAGGAGATACAAT+AGG + chr7_2:85311094-85311113 Msa1084960:intron 35.0%
ATACTCCTTAAAACATGCAG+TGG - chr7_2:85311230-85311249 None:intergenic 35.0%
!! AGGTAGGTATGGAGTTTTAA+TGG - chr7_2:85311415-85311434 None:intergenic 35.0%
TCTTGAATCATATGATGCCT+TGG + chr7_2:85311449-85311468 Msa1084960:CDS 35.0%
GTGAATATGCAGATTGAGAA+TGG + chr7_2:85311471-85311490 Msa1084960:CDS 35.0%
!!! CTGTTTTGGTGGGAATATTA+AGG + chr7_2:85311584-85311603 Msa1084960:CDS 35.0%
GGTGGGAATATTAAGGTTAT+TGG + chr7_2:85311591-85311610 Msa1084960:CDS 35.0%
! TTTTCAAAGTGTGCTTTCCA+TGG + chr7_2:85311743-85311762 Msa1084960:CDS 35.0%
TTTCAAAGTGTGCTTTCCAT+GGG + chr7_2:85311744-85311763 Msa1084960:CDS 35.0%
!!! AAGTTTTGAATCACATGTGG+AGG - chr7_2:85311816-85311835 None:intergenic 35.0%
!!! GCTAAGTTTTGAATCACATG+TGG - chr7_2:85311819-85311838 None:intergenic 35.0%
CTGATAATAGAATTGCTGTG+TGG + chr7_2:85311901-85311920 Msa1084960:CDS 35.0%
!! AAATCCCATTGGTTTGAACA+CGG + chr7_2:85312097-85312116 Msa1084960:CDS 35.0%
! AGAATTTGCCAATTTGGTGA+AGG + chr7_2:85312193-85312212 Msa1084960:CDS 35.0%
ACCAATTTCCTTCACCAAAT+TGG - chr7_2:85312204-85312223 None:intergenic 35.0%
! ATTTGGCGGTTAGTTGTTAT+TGG + chr7_2:85312298-85312317 Msa1084960:exon 35.0%
!! CGGTTAGTTGTTATTGGTTT+AGG + chr7_2:85312304-85312323 Msa1084960:three_prime_UTR 35.0%
!! GTGGGTTTGTTTCTGTAAAA+GGG - chr7_2:85312505-85312524 None:intergenic 35.0%
GAAGAACAAGCTCTTGATTA+TGG + chr7_2:85312574-85312593 Msa1084960:three_prime_UTR 35.0%
GCTACATTCAAGACCTATAC+TGG + chr7_2:85309472-85309491 Msa1084960:CDS 40.0%
GTAACATTGGAAGGATGAAG+CGG - chr7_2:85309523-85309542 None:intergenic 40.0%
TTGTCAGTGGTAACATTGGA+AGG - chr7_2:85309532-85309551 None:intergenic 40.0%
!! GGTTTTGTCAGTGGTAACAT+TGG - chr7_2:85309536-85309555 None:intergenic 40.0%
TTACCACTGACAAAACCACT+AGG + chr7_2:85309539-85309558 Msa1084960:CDS 40.0%
ATGGTGATCTACTAGAGTGA+AGG + chr7_2:85309867-85309886 Msa1084960:intron 40.0%
TCGTACATGAAGACAGATAC+AGG - chr7_2:85310664-85310683 None:intergenic 40.0%
TGTATCTGTCTTCATGTACG+AGG + chr7_2:85310663-85310682 Msa1084960:intron 40.0%
CATTATTCAGGAACTCTTCC+TGG + chr7_2:85310771-85310790 Msa1084960:intron 40.0%
AACTGTAGAATGCATGCTCT+GGG + chr7_2:85311018-85311037 Msa1084960:intron 40.0%
GATCTGTGATGAAACCATAG+AGG + chr7_2:85311082-85311101 Msa1084960:intron 40.0%
AGCCTATTGTATCTCCTCTA+TGG - chr7_2:85311099-85311118 None:intergenic 40.0%
! CTGTACCACTGCATGTTTTA+AGG + chr7_2:85311222-85311241 Msa1084960:intron 40.0%
AAAGTGGTCTCATGTGTTTC+TGG + chr7_2:85311256-85311275 Msa1084960:intron 40.0%
TATTTACAGGACTTGTACCG+AGG + chr7_2:85311362-85311381 Msa1084960:intron 40.0%
TCTCAGACACTTTATGTCCT+CGG - chr7_2:85311382-85311401 None:intergenic 40.0%
AAAACTCCATACCTACCTGA+CGG + chr7_2:85311417-85311436 Msa1084960:CDS 40.0%
CTCAATCTGCATATTCACCA+AGG - chr7_2:85311469-85311488 None:intergenic 40.0%
CAGATTGAGAATGGAGTTGA+AGG + chr7_2:85311480-85311499 Msa1084960:CDS 40.0%
!! GGAGTTGAAGGTGTTATTGT+TGG + chr7_2:85311492-85311511 Msa1084960:CDS 40.0%
!! GTTGAAGGTGTTATTGTTGG+TGG + chr7_2:85311495-85311514 Msa1084960:CDS 40.0%
TGAAGGCCAACTAATGAACT+GGG + chr7_2:85311527-85311546 Msa1084960:CDS 40.0%
ATTCCCACCAAAACAGTTGA+CGG - chr7_2:85311580-85311599 None:intergenic 40.0%
! AGGAGGTTTTGCCATAGTAA+GGG - chr7_2:85311704-85311723 None:intergenic 40.0%
! AAGGAGGTTTTGCCATAGTA+AGG - chr7_2:85311705-85311724 None:intergenic 40.0%
TTACTATGGCAAAACCTCCT+TGG + chr7_2:85311704-85311723 Msa1084960:CDS 40.0%
TTCAAAGTGTGCTTTCCATG+GGG + chr7_2:85311745-85311764 Msa1084960:CDS 40.0%
! CTTAGCTCAAAGTACTTGCT+TGG + chr7_2:85311833-85311852 Msa1084960:CDS 40.0%
AGGAATGTATGGGAAATGAC+AGG + chr7_2:85311865-85311884 Msa1084960:CDS 40.0%
GGAATGTATGGGAAATGACA+GGG + chr7_2:85311866-85311885 Msa1084960:CDS 40.0%
AATAGAATTGCTGTGTGGAG+TGG + chr7_2:85311906-85311925 Msa1084960:CDS 40.0%
ATAGAATTGCTGTGTGGAGT+GGG + chr7_2:85311907-85311926 Msa1084960:CDS 40.0%
GTTGCAAGCAATTTGATTCC+AGG + chr7_2:85311987-85312006 Msa1084960:CDS 40.0%
TTAATGCGAGAGCTCATGTT+TGG + chr7_2:85312011-85312030 Msa1084960:CDS 40.0%
TAATGCGAGAGCTCATGTTT+GGG + chr7_2:85312012-85312031 Msa1084960:CDS 40.0%
TGGAAAAGCCAGTCAATCAA+AGG - chr7_2:85312071-85312090 None:intergenic 40.0%
GTGTTCAAACCAATGGGATT+TGG - chr7_2:85312098-85312117 None:intergenic 40.0%
! GCCAATTTGGTGAAGGAAAT+TGG + chr7_2:85312200-85312219 Msa1084960:CDS 40.0%
! ATTGGTCGACAGCATTTTGT+TGG + chr7_2:85312218-85312237 Msa1084960:CDS 40.0%
!! TGATGACGACGACTTTTTCT+TGG + chr7_2:85312262-85312281 Msa1084960:CDS 40.0%
!! GGTGGGTTTGTTTCTGTAAA+AGG - chr7_2:85312506-85312525 None:intergenic 40.0%
!! ACCTCTAAAATTGCATGGGT+GGG - chr7_2:85312523-85312542 None:intergenic 40.0%
!! GTCCACCTCTAAAATTGCAT+GGG - chr7_2:85312527-85312546 None:intergenic 40.0%
!! TGTCCACCTCTAAAATTGCA+TGG - chr7_2:85312528-85312547 None:intergenic 40.0%
TGTGAAGCATACGCCAGTAT+AGG - chr7_2:85309488-85309507 None:intergenic 45.0%
TATACTGGCGTATGCTTCAC+AGG + chr7_2:85309487-85309506 Msa1084960:CDS 45.0%
!!! GAACCTAGTGGTTTTGTCAG+TGG - chr7_2:85309545-85309564 None:intergenic 45.0%
TCTACTAGAGTGAAGGACTC+TGG + chr7_2:85309874-85309893 Msa1084960:intron 45.0%
CACAACATATTGGGGCTCTT+CGG - chr7_2:85310586-85310605 None:intergenic 45.0%
GATTTCACAGCTGCTTGTGT+AGG - chr7_2:85310800-85310819 None:intergenic 45.0%
TCTCATAACTACGCATTGGG+AGG - chr7_2:85310832-85310851 None:intergenic 45.0%
GAACTGTAGAATGCATGCTC+TGG + chr7_2:85311017-85311036 Msa1084960:intron 45.0%
!! CTCATGTGTTTCTGGCATCA+TGG + chr7_2:85311264-85311283 Msa1084960:intron 45.0%
TCAAGATCAAATCGACCGTC+AGG - chr7_2:85311435-85311454 None:intergenic 45.0%
!! GTTATTGTTGGTGGCACAAC+TGG + chr7_2:85311504-85311523 Msa1084960:CDS 45.0%
GTGAAGGCCAACTAATGAAC+TGG + chr7_2:85311526-85311545 Msa1084960:CDS 45.0%
GCTCTTCCCAGTTCATTAGT+TGG - chr7_2:85311536-85311555 None:intergenic 45.0%
!!! ACACCGTCAACTGTTTTGGT+GGG + chr7_2:85311574-85311593 Msa1084960:CDS 45.0%
ATACTGGAAGCAACTCAACC+AGG + chr7_2:85311616-85311635 Msa1084960:CDS 45.0%
TACTGGAAGCAACTCAACCA+GGG + chr7_2:85311617-85311636 Msa1084960:CDS 45.0%
AGTTGCATGAATTGCTTCCC+TGG - chr7_2:85311637-85311656 None:intergenic 45.0%
AGCAATTCATGCAACTGAGC+AGG + chr7_2:85311641-85311660 Msa1084960:CDS 45.0%
GCAATTCATGCAACTGAGCA+GGG + chr7_2:85311642-85311661 Msa1084960:CDS 45.0%
TATGGCAAAACCTCCTTGGA+AGG + chr7_2:85311708-85311727 Msa1084960:CDS 45.0%
CAAAACCTCCTTGGAAGGTA+TGG + chr7_2:85311713-85311732 Msa1084960:CDS 45.0%
ATGAGCAACCATACCTTCCA+AGG - chr7_2:85311724-85311743 None:intergenic 45.0%
ATATATGATTGTGGGCCCCA+TGG - chr7_2:85311763-85311782 None:intergenic 45.0%
TATAATGTGCCTTCACGGAC+TGG + chr7_2:85311780-85311799 Msa1084960:CDS 45.0%
! GCTGGTGTCAAGGAATGTAT+GGG + chr7_2:85311855-85311874 Msa1084960:CDS 45.0%
ATGAATGCCACGATGCTAGA+TGG + chr7_2:85311937-85311956 Msa1084960:CDS 45.0%
TGAATGCCACGATGCTAGAT+GGG + chr7_2:85311938-85311957 Msa1084960:CDS 45.0%
ACGATGCTAGATGGGGTTAT+GGG + chr7_2:85311946-85311965 Msa1084960:CDS 45.0%
ATGAGCTCTCGCATTAAACC+TGG - chr7_2:85312008-85312027 None:intergenic 45.0%
AATGCGAGAGCTCATGTTTG+GGG + chr7_2:85312013-85312032 Msa1084960:CDS 45.0%
AGCTCTTGCCTTTGATTGAC+TGG + chr7_2:85312060-85312079 Msa1084960:CDS 45.0%
TTCCACATGCCAAATCCCAT+TGG + chr7_2:85312086-85312105 Msa1084960:CDS 45.0%
AACCAATGGGATTTGGCATG+TGG - chr7_2:85312091-85312110 None:intergenic 45.0%
AGAGCCGTGTTCAAACCAAT+GGG - chr7_2:85312104-85312123 None:intergenic 45.0%
AAGAGCCGTGTTCAAACCAA+TGG - chr7_2:85312105-85312124 None:intergenic 45.0%
TTGCTCAACTTGGAGTTGTC+AGG + chr7_2:85312123-85312142 Msa1084960:CDS 45.0%
ACAAATGGCAGCCTGAAAAC+TGG - chr7_2:85312149-85312168 None:intergenic 45.0%
! TCCAAAGGGAGAGGTACAAA+TGG - chr7_2:85312164-85312183 None:intergenic 45.0%
! TACCTCTCCCTTTGGAGAAA+AGG + chr7_2:85312168-85312187 Msa1084960:CDS 45.0%
! ATCCTTTTCTCCAAAGGGAG+AGG - chr7_2:85312173-85312192 None:intergenic 45.0%
! ACCCACCCATGCAATTTTAG+AGG + chr7_2:85312519-85312538 Msa1084960:three_prime_UTR 45.0%
!! CACCTCTAAAATTGCATGGG+TGG - chr7_2:85312524-85312543 None:intergenic 45.0%
!! CACCCATGCAATTTTAGAGG+TGG + chr7_2:85312522-85312541 Msa1084960:three_prime_UTR 45.0%
! AGAAGCACGTACAGTAGTCC+TGG + chr7_2:85309312-85309331 Msa1084960:five_prime_UTR 50.0%
TGGTCTCAGAAATGTGAGGG+CGG - chr7_2:85309341-85309360 None:intergenic 50.0%
GGAAGGATGAAGCGGAAAAG+CGG - chr7_2:85309515-85309534 None:intergenic 50.0%
! GTAGAATGCATGCTCTGGGT+AGG + chr7_2:85311022-85311041 Msa1084960:intron 50.0%
! CATGCTCTGGGTAGGATTTC+TGG + chr7_2:85311030-85311049 Msa1084960:intron 50.0%
AATCGACCGTCAGGTAGGTA+TGG - chr7_2:85311426-85311445 None:intergenic 50.0%
GATCAAATCGACCGTCAGGT+AGG - chr7_2:85311431-85311450 None:intergenic 50.0%
!! CACACCGTCAACTGTTTTGG+TGG + chr7_2:85311573-85311592 Msa1084960:CDS 50.0%
! TGCAACTGAGCAGGGTTTTG+CGG + chr7_2:85311650-85311669 Msa1084960:CDS 50.0%
! GGTTTTGCGGTTGGAATGCA+TGG + chr7_2:85311663-85311682 Msa1084960:CDS 50.0%
AGCAACCATACCTTCCAAGG+AGG - chr7_2:85311721-85311740 None:intergenic 50.0%
ATGTCTTGACCAGTCCGTGA+AGG - chr7_2:85311792-85311811 None:intergenic 50.0%
! GCTCAAAGTACTTGCTTGGC+TGG + chr7_2:85311837-85311856 Msa1084960:CDS 50.0%
! TACTTGCTTGGCTGGTGTCA+AGG + chr7_2:85311845-85311864 Msa1084960:CDS 50.0%
! GGCTGGTGTCAAGGAATGTA+TGG + chr7_2:85311854-85311873 Msa1084960:CDS 50.0%
GAATGCCACGATGCTAGATG+GGG + chr7_2:85311939-85311958 Msa1084960:CDS 50.0%
CATAACCCCATCTAGCATCG+TGG - chr7_2:85311947-85311966 None:intergenic 50.0%
CACGATGCTAGATGGGGTTA+TGG + chr7_2:85311945-85311964 Msa1084960:CDS 50.0%
CGATGCTAGATGGGGTTATG+GGG + chr7_2:85311947-85311966 Msa1084960:CDS 50.0%
ATGCGAGAGCTCATGTTTGG+GGG + chr7_2:85312014-85312033 Msa1084960:CDS 50.0%
AACACGGCTCTTGCTCAACT+TGG + chr7_2:85312113-85312132 Msa1084960:CDS 50.0%
! GAGTTGTCAGGCCAGTTTTC+AGG + chr7_2:85312135-85312154 Msa1084960:CDS 50.0%
GCCATTTGTACCTCTCCCTT+TGG + chr7_2:85312160-85312179 Msa1084960:CDS 50.0%
TGTTGGAACTGAAGACGTCC+AGG + chr7_2:85312235-85312254 Msa1084960:CDS 50.0%
AGTCGTCGTCATCAAGAACC+TGG - chr7_2:85312256-85312275 None:intergenic 50.0%
GCTCTTCGGCAAGCACAGTA+AGG - chr7_2:85310572-85310591 None:intergenic 55.0%
AGCTGCTTGTGTAGGCTTCC+AGG - chr7_2:85310792-85310811 None:intergenic 55.0%
ACGCATTGGGAGGTGAGAAG+TGG - chr7_2:85310822-85310841 None:intergenic 55.0%
!! GTTGGTGGCACAACTGGTGA+AGG + chr7_2:85311510-85311529 Msa1084960:CDS 55.0%
! GCGCACACCGTCAACTGTTT+TGG + chr7_2:85311570-85311589 Msa1084960:CDS 55.0%
! ACTGAGCAGGGTTTTGCGGT+TGG + chr7_2:85311654-85311673 Msa1084960:CDS 55.0%
AGATGGGGTTATGGGGCTAC+TGG + chr7_2:85311954-85311973 Msa1084960:CDS 55.0%
GAAATGTGAGGGCGGCTGCC+AGG - chr7_2:85309333-85309352 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 85309286 85312623 85309286 ID=Msa1084960;Name=Msa1084960
chr7_2 mRNA 85309286 85312623 85309286 ID=Msa1084960-mRNA-1;Parent=Msa1084960;Name=Msa1084960-mRNA-1;_AED=0.01;_eAED=0.01;_QI=183|1|1|1|1|1|3|325|366
chr7_2 exon 85309286 85309560 85309286 ID=Msa1084960-mRNA-1:exon:23033;Parent=Msa1084960-mRNA-1
chr7_2 exon 85310781 85310861 85310781 ID=Msa1084960-mRNA-1:exon:23034;Parent=Msa1084960-mRNA-1
chr7_2 exon 85311371 85312623 85311371 ID=Msa1084960-mRNA-1:exon:23035;Parent=Msa1084960-mRNA-1
chr7_2 five_prime_UTR 85309286 85309468 85309286 ID=Msa1084960-mRNA-1:five_prime_utr;Parent=Msa1084960-mRNA-1
chr7_2 CDS 85309469 85309560 85309469 ID=Msa1084960-mRNA-1:cds;Parent=Msa1084960-mRNA-1
chr7_2 CDS 85310781 85310861 85310781 ID=Msa1084960-mRNA-1:cds;Parent=Msa1084960-mRNA-1
chr7_2 CDS 85311371 85312298 85311371 ID=Msa1084960-mRNA-1:cds;Parent=Msa1084960-mRNA-1
chr7_2 three_prime_UTR 85312299 85312623 85312299 ID=Msa1084960-mRNA-1:three_prime_utr;Parent=Msa1084960-mRNA-1
Gene Sequence

>Msa1084960

ATGGCTACATTCAAGACCTATACTGGCGTATGCTTCACAGGATCCGCTTTTCCGCTTCATCCTTCCAATGTTACCACTGACAAAACCACTAGGAACTCTTCCTGGAAGCCTACACAAGCAGCTGTGAAATCCACTTCTCACCTCCCAATGCGTAGTTATGAGATGAAAAATAGGACTTGTACCGAGGACATAAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGACGGTCGATTTGATCTTGAATCATATGATGCCTTGGTGAATATGCAGATTGAGAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGCCAACTAATGAACTGGGAAGAGCACATAATGCTTATTGCGCACACCGTCAACTGTTTTGGTGGGAATATTAAGGTTATTGGAAATACTGGAAGCAACTCAACCAGGGAAGCAATTCATGCAACTGAGCAGGGTTTTGCGGTTGGAATGCATGGTGCTCTTCATATAAACCCTTACTATGGCAAAACCTCCTTGGAAGGTATGGTTGCTCATTTTCAAAGTGTGCTTTCCATGGGGCCCACAATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCACATGTGATTCAAAACTTAGCTCAAAGTACTTGCTTGGCTGGTGTCAAGGAATGTATGGGAAATGACAGGGTTAAAGAGTATACTGATAATAGAATTGCTGTGTGGAGTGGGAACGATGATGAATGCCACGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAATTTGATTCCAGGTTTAATGCGAGAGCTCATGTTTGGGGGAAAAAATCCTACATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGCTGCCATTTGTACCTCTCCCTTTGGAGAAAAGGATAGAATTTGCCAATTTGGTGAAGGAAATTGGTCGACAGCATTTTGTTGGAACTGAAGACGTCCAGGTTCTTGATGACGACGACTTTTTCTTGGTTAGTCGATATTAA

Protein sequence

>Msa1084960

MATFKTYTGVCFTGSAFPLHPSNVTTDKTTRNSSWKPTQAAVKSTSHLPMRSYEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLESYDALVNMQIENGVEGVIVGGTTGEGQLMNWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLEGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQSTCLAGVKECMGNDRVKEYTDNRIAVWSGNDDECHDARWGYGATGVISVASNLIPGLMRELMFGGKNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLEKRIEFANLVKEIGRQHFVGTEDVQVLDDDDFFLVSRY*