AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1111090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111090 MtrunA17_Chr7g0245941 98.087 366 7 0 1 366 1 366 0.0 752
Msa1111090 MtrunA17_Chr1g0195781 92.896 366 26 0 1 366 1 366 0.0 723
Msa1111090 MtrunA17_Chr8g0351631 66.377 345 116 0 22 366 96 440 5.16e-174 491
Msa1111090 MtrunA17_Chr8g0351611 63.760 367 127 3 1 366 1 362 2.51e-167 471
Msa1111090 MtrunA17_Chr8g0351581 69.231 312 95 1 55 366 20 330 1.43e-163 460
Msa1111090 MtrunA17_Chr8g0351641 63.782 312 108 1 55 366 1 307 8.09e-148 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1111090 AT2G45440.1 74.317 366 93 1 1 366 1 365 0.0 573
Msa1111090 AT3G60880.2 73.497 366 96 1 1 366 1 365 0.0 560
Msa1111090 AT3G60880.1 73.497 366 95 2 1 366 1 364 0.0 557

Find 125 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGGAATATTAAGGTTAT+TGG 0.186837 7_3:+56668950 Msa1111090:CDS
AAGGATAGAATTTGCCAATT+TGG 0.190236 7_3:+56669546 Msa1111090:CDS
GGTGGGTTTGTTTCTGTAAA+AGG 0.216160 7_3:-56669862 None:intergenic
ACCAATTTCCTTCACCAAAT+TGG 0.224725 7_3:-56669560 None:intergenic
GCCAATTTGGTGAAGGAAAT+TGG 0.226319 7_3:+56669559 Msa1111090:CDS
GAAGACTAATGTGTGATTTA+TGG 0.239571 7_3:-56666780 None:intergenic
CGGTTAGTTGTTATTGGTTT+AGG 0.269335 7_3:+56669663 Msa1111090:three_prime_UTR
ATTAAGGTTATTGGAAATAC+TGG 0.273517 7_3:+56668959 Msa1111090:CDS
ATTTGGCGGTTAGTTGTTAT+TGG 0.292413 7_3:+56669657 Msa1111090:exon
TTGGTTAGTCGATATTAATT+TGG 0.295494 7_3:+56669640 Msa1111090:exon
GTGCTTCTTTCATTTATATA+AGG 0.303780 7_3:-56666719 None:intergenic
GCGCACACCGTCAACTGTTT+TGG 0.304655 7_3:+56668929 Msa1111090:CDS
CATTATTCAGGAACTCTTCC+TGG 0.320905 7_3:+56668130 Msa1111090:intron
AGCTGCTTGTGTAGGCTTCC+AGG 0.338802 7_3:-56668148 None:intergenic
GAAGAACAAGCTCTTGATTA+TGG 0.342274 7_3:+56669933 Msa1111090:three_prime_UTR
TTGTTTCTGTAAAAGGGTTT+AGG 0.349029 7_3:-56669855 None:intergenic
GCCATTTGTACCTCTCCCTT+TGG 0.355708 7_3:+56669519 Msa1111090:CDS
CACGATGCTAGATGGGGTTA+TGG 0.357163 7_3:+56669304 Msa1111090:CDS
TACCTCTCCCTTTGGAGAAA+AGG 0.366582 7_3:+56669527 Msa1111090:CDS
GTGAAGGCCAACTAATGAAC+TGG 0.368307 7_3:+56668885 Msa1111090:CDS
GTTGCAAGCAATTTGATTCC+AGG 0.371051 7_3:+56669346 Msa1111090:CDS
GTGTTCAAACCAATGGGATT+TGG 0.372649 7_3:-56669454 None:intergenic
AGCTCTTGCCTTTGATTGAC+TGG 0.378010 7_3:+56669419 Msa1111090:CDS
TAATGCGAGAGCTCATGTTT+GGG 0.389995 7_3:+56669371 Msa1111090:CDS
GTGGGTTTGTTTCTGTAAAA+GGG 0.390300 7_3:-56669861 None:intergenic
ACGATGCTAGATGGGGTTAT+GGG 0.392947 7_3:+56669305 Msa1111090:CDS
ATGAATGCCACGATGCTAGA+TGG 0.396310 7_3:+56669296 Msa1111090:CDS
TTGCTCAACTTGGAGTTGTC+AGG 0.401383 7_3:+56669482 Msa1111090:CDS
TTAATGCGAGAGCTCATGTT+TGG 0.404176 7_3:+56669370 Msa1111090:CDS
AACACGGCTCTTGCTCAACT+TGG 0.407658 7_3:+56669472 Msa1111090:CDS
GCTCTTCCCAGTTCATTAGT+TGG 0.415200 7_3:-56668892 None:intergenic
GGCTGGTGTCAAGGAATGTA+TGG 0.417544 7_3:+56669213 Msa1111090:CDS
GCTACATTCAAGACCTATAC+TGG 0.420080 7_3:+56666894 Msa1111090:CDS
TCATCTCATAACTACGCATT+GGG 0.424346 7_3:-56668191 None:intergenic
AGTTGCATGAATTGCTTCCC+TGG 0.424932 7_3:-56668993 None:intergenic
CTTCATATAAACCCTTACTA+TGG 0.428403 7_3:+56669049 Msa1111090:CDS
AGATGGGGTTATGGGGCTAC+TGG 0.429920 7_3:+56669313 Msa1111090:CDS
ACAAATGGCAGCCTGAAAAC+TGG 0.430651 7_3:-56669505 None:intergenic
GAAATGTGAGGGCGGCTGCC+AGG 0.431645 7_3:-56666752 None:intergenic
TTTCAAAGTGTGCTTTCCAT+GGG 0.435236 7_3:+56669103 Msa1111090:CDS
GGAGTTGAAGGTGTTATTGT+TGG 0.435948 7_3:+56668851 Msa1111090:CDS
AATTGTCAAACATAAATGTA+AGG 0.440991 7_3:-56669958 None:intergenic
GTTATTGTTGGTGGCACAAC+TGG 0.447799 7_3:+56668863 Msa1111090:CDS
GCTCAAAGTACTTGCTTGGC+TGG 0.459949 7_3:+56669196 Msa1111090:CDS
TCATTATAATAATGTTTCAC+TGG 0.461608 7_3:-56669912 None:intergenic
TCATATATAATGTGCCTTCA+CGG 0.466811 7_3:+56669134 Msa1111090:CDS
AGCAATTCATGCAACTGAGC+AGG 0.472668 7_3:+56669000 Msa1111090:CDS
CTTAGCTCAAAGTACTTGCT+TGG 0.473911 7_3:+56669192 Msa1111090:CDS
TTCATCTCATAACTACGCAT+TGG 0.474360 7_3:-56668192 None:intergenic
TATACTGGCGTATGCTTCAC+AGG 0.477913 7_3:+56666909 Msa1111090:CDS
CAAAACCTCCTTGGAAGGTA+TGG 0.482290 7_3:+56669072 Msa1111090:CDS
GTTGAAGGTGTTATTGTTGG+TGG 0.483414 7_3:+56668854 Msa1111090:CDS
GTTAGTCGATATTAATTTGG+CGG 0.484106 7_3:+56669643 Msa1111090:exon
TCAAGATCAAATCGACCGTC+AGG 0.487193 7_3:-56668791 None:intergenic
TTACTATGGCAAAACCTCCT+TGG 0.496884 7_3:+56669063 Msa1111090:CDS
TATAATGTGCCTTCACGGAC+TGG 0.501920 7_3:+56669139 Msa1111090:CDS
TTGTCAGTGGTAACATTGGA+AGG 0.502303 7_3:-56666951 None:intergenic
GTGAATATGCAGATTGAGAA+TGG 0.503509 7_3:+56668830 Msa1111090:CDS
GATTTCACAGCTGCTTGTGT+AGG 0.510543 7_3:-56668156 None:intergenic
AACCAATGGGATTTGGCATG+TGG 0.510972 7_3:-56669447 None:intergenic
TACTTGCTTGGCTGGTGTCA+AGG 0.511271 7_3:+56669204 Msa1111090:CDS
CACCTCTAAAATTGCATGGG+TGG 0.516088 7_3:-56669880 None:intergenic
AGGAATGTATGGGAAATGAC+AGG 0.516838 7_3:+56669224 Msa1111090:CDS
TGAAGAGTTGTTTATCATTG+TGG 0.518195 7_3:-56666807 None:intergenic
AAGAGCTTAGAATTCAATGT+AGG 0.522936 7_3:-56669403 None:intergenic
TGTTGGAACTGAAGACGTCC+AGG 0.522988 7_3:+56669594 Msa1111090:CDS
ACCTCTAAAATTGCATGGGT+GGG 0.523263 7_3:-56669879 None:intergenic
AAGAGCCGTGTTCAAACCAA+TGG 0.526094 7_3:-56669461 None:intergenic
ATGAGCTCTCGCATTAAACC+TGG 0.527824 7_3:-56669364 None:intergenic
AGAAGCACGTACAGTAGTCC+TGG 0.528524 7_3:+56666734 Msa1111090:five_prime_UTR
TCCAAAGGGAGAGGTACAAA+TGG 0.530348 7_3:-56669520 None:intergenic
ATTCCCACCAAAACAGTTGA+CGG 0.533028 7_3:-56668936 None:intergenic
AGAATTTGCCAATTTGGTGA+AGG 0.533742 7_3:+56669552 Msa1111090:CDS
AATCGACCGTCAGGTAGGTA+TGG 0.533788 7_3:-56668782 None:intergenic
GGCACATTATATATGATTGT+GGG 0.534618 7_3:-56669127 None:intergenic
TGTGAAGCATACGCCAGTAT+AGG 0.536807 7_3:-56666907 None:intergenic
AGGCACATTATATATGATTG+TGG 0.538234 7_3:-56669128 None:intergenic
AATGCGAGAGCTCATGTTTG+GGG 0.539435 7_3:+56669372 Msa1111090:CDS
TAGAAGTAGAAGAACGAAAA+CGG 0.543296 7_3:-56666856 None:intergenic
CAGATTGAGAATGGAGTTGA+AGG 0.544549 7_3:+56668839 Msa1111090:CDS
TTCCACATGCCAAATCCCAT+TGG 0.545798 7_3:+56669445 Msa1111090:CDS
TCTTGAATCATATGATGCCT+TGG 0.551015 7_3:+56668808 Msa1111090:CDS
TGAATGCCACGATGCTAGAT+GGG 0.551513 7_3:+56669297 Msa1111090:CDS
GCAATTCATGCAACTGAGCA+GGG 0.554140 7_3:+56669001 Msa1111090:CDS
AGTCGTCGTCATCAAGAACC+TGG 0.556999 7_3:-56669612 None:intergenic
TGTCCACCTCTAAAATTGCA+TGG 0.562045 7_3:-56669884 None:intergenic
TCTCAGACACTTTATGTCCT+CGG 0.562351 7_3:-56668738 None:intergenic
ATACTGGAAGCAACTCAACC+AGG 0.563622 7_3:+56668975 Msa1111090:CDS
ATGAGCAACCATACCTTCCA+AGG 0.567921 7_3:-56669080 None:intergenic
TATGGCAAAACCTCCTTGGA+AGG 0.570023 7_3:+56669067 Msa1111090:CDS
TGGAAAAGCCAGTCAATCAA+AGG 0.572095 7_3:-56669427 None:intergenic
AGAGCCGTGTTCAAACCAAT+GGG 0.577523 7_3:-56669460 None:intergenic
GTTTAGGCATATTTGAAACA+AGG 0.585800 7_3:-56669839 None:intergenic
GTCCACCTCTAAAATTGCAT+GGG 0.588951 7_3:-56669883 None:intergenic
ATAGAATTGCTGTGTGGAGT+GGG 0.595797 7_3:+56669266 Msa1111090:CDS
ACGCATTGGGAGGTGAGAAG+TGG 0.597263 7_3:-56668178 None:intergenic
ATTGTCAAACATAAATGTAA+GGG 0.598120 7_3:-56669957 None:intergenic
ATATATGATTGTGGGCCCCA+TGG 0.599404 7_3:-56669119 None:intergenic
CGATGCTAGATGGGGTTATG+GGG 0.609310 7_3:+56669306 Msa1111090:CDS
TTCAAAGTGTGCTTTCCATG+GGG 0.610187 7_3:+56669104 Msa1111090:CDS
TATTTACAGGACTTGTACCG+AGG 0.611279 7_3:+56668721 Msa1111090:intron
AAGGATACAATAAGTCTACA+AGG 0.613062 7_3:-56669689 None:intergenic
ATGCGAGAGCTCATGTTTGG+GGG 0.614814 7_3:+56669373 Msa1111090:CDS
AAATCCCATTGGTTTGAACA+CGG 0.620889 7_3:+56669456 Msa1111090:CDS
GGAAGGATGAAGCGGAAAAG+CGG 0.623856 7_3:-56666934 None:intergenic
TGAAGGCCAACTAATGAACT+GGG 0.625991 7_3:+56668886 Msa1111090:CDS
TACTGGAAGCAACTCAACCA+GGG 0.628120 7_3:+56668976 Msa1111090:CDS
AATAGAATTGCTGTGTGGAG+TGG 0.632726 7_3:+56669265 Msa1111090:CDS
TTATGGTCTCAGAAATGTGA+GGG 0.638325 7_3:-56666763 None:intergenic
CTCAATCTGCATATTCACCA+AGG 0.638337 7_3:-56668825 None:intergenic
GCTGGTGTCAAGGAATGTAT+GGG 0.645660 7_3:+56669214 Msa1111090:CDS
ATGTCTTGACCAGTCCGTGA+AGG 0.650374 7_3:-56669148 None:intergenic
GTTGGTGGCACAACTGGTGA+AGG 0.654935 7_3:+56668869 Msa1111090:CDS
GATCAAATCGACCGTCAGGT+AGG 0.655832 7_3:-56668787 None:intergenic
TCTCATAACTACGCATTGGG+AGG 0.661369 7_3:-56668188 None:intergenic
GGAATGTATGGGAAATGACA+GGG 0.665453 7_3:+56669225 Msa1111090:CDS
TTACCACTGACAAAACCACT+AGG 0.673289 7_3:+56666961 Msa1111090:CDS
AAAACTCCATACCTACCTGA+CGG 0.675250 7_3:+56668776 Msa1111090:CDS
GTAACATTGGAAGGATGAAG+CGG 0.682034 7_3:-56666942 None:intergenic
TGGTCTCAGAAATGTGAGGG+CGG 0.698944 7_3:-56666760 None:intergenic
AGCAACCATACCTTCCAAGG+AGG 0.704764 7_3:-56669077 None:intergenic
GAATGCCACGATGCTAGATG+GGG 0.719711 7_3:+56669298 Msa1111090:CDS
CATAACCCCATCTAGCATCG+TGG 0.731383 7_3:-56669303 None:intergenic
TTTATGGTCTCAGAAATGTG+AGG 0.742496 7_3:-56666764 None:intergenic
CTGATAATAGAATTGCTGTG+TGG 0.757477 7_3:+56669260 Msa1111090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCAATTAAGATAAT+AGG + chr7_3:56667378-56667397 Msa1111090:intron 10.0%
!!! TTTTTTCAATTAAGATAATA+GGG + chr7_3:56667379-56667398 Msa1111090:intron 10.0%
!!! TTTTTTTAATTAAGATTGTA+AGG + chr7_3:56667682-56667701 Msa1111090:intron 10.0%
!!! TTTTTTAATTAAGATTGTAA+GGG + chr7_3:56667683-56667702 Msa1111090:intron 10.0%
!!! TTTTTCAATTAAGATAATAG+GGG + chr7_3:56667380-56667399 Msa1111090:intron 15.0%
!! ACATTAAACAAACAAAAAAT+TGG - chr7_3:56668096-56668115 None:intergenic 15.0%
!! TATTCTTTATATATATTGTG+TGG + chr7_3:56668318-56668337 Msa1111090:intron 15.0%
!! CTCTGTTTGATAAAAAATAT+CGG + chr7_3:56667498-56667517 Msa1111090:intron 20.0%
!!! ATAACTAAAAAAGGTTTGTT+TGG - chr7_3:56667822-56667841 None:intergenic 20.0%
!! TAAGCTTGTATAACTAAAAA+AGG - chr7_3:56667831-56667850 None:intergenic 20.0%
!!! TATTTTCTTTTTCTGCTATA+AGG + chr7_3:56667983-56668002 Msa1111090:intron 20.0%
!! TGGAAAATATAGAATTTAGT+AGG - chr7_3:56668268-56668287 None:intergenic 20.0%
!!! TTTACACATTGAACATATTT+TGG + chr7_3:56668486-56668505 Msa1111090:intron 20.0%
!!! TAAGGAGTATATTTAAAAAG+TGG + chr7_3:56668599-56668618 Msa1111090:intron 20.0%
!!! TTAATACTGATTTTGTGATA+CGG - chr7_3:56668686-56668705 None:intergenic 20.0%
!! AAGCTATATATTGTATTTAC+AGG + chr7_3:56668708-56668727 Msa1111090:intron 20.0%
!! TCATTATAATAATGTTTCAC+TGG - chr7_3:56669915-56669934 None:intergenic 20.0%
!! ATTGTCAAACATAAATGTAA+GGG - chr7_3:56669960-56669979 None:intergenic 20.0%
!! AATTGTCAAACATAAATGTA+AGG - chr7_3:56669961-56669980 None:intergenic 20.0%
! GTGCTTCTTTCATTTATATA+AGG - chr7_3:56666722-56666741 None:intergenic 25.0%
!! GCTGATAATGATAAGTAAAA+TGG - chr7_3:56666997-56667016 None:intergenic 25.0%
!!! TGCGTTGATTTGTTAAAAAT+TGG + chr7_3:56667145-56667164 Msa1111090:intron 25.0%
!!! GAATTTCTTTTGTTGTTCAT+CGG + chr7_3:56667192-56667211 Msa1111090:intron 25.0%
!! GTAGTGTTTTGTAAAATTAG+CGG + chr7_3:56667601-56667620 Msa1111090:intron 25.0%
! AAGACATGTTTATGTATGTT+TGG - chr7_3:56667882-56667901 None:intergenic 25.0%
! CAAACAAAAAATTGGATTCA+TGG - chr7_3:56668088-56668107 None:intergenic 25.0%
! GTAGTTATGAGATGAAAAAT+AGG + chr7_3:56668199-56668218 Msa1111090:CDS 25.0%
! TTATGAGATGAAAAATAGGT+AGG + chr7_3:56668203-56668222 Msa1111090:intron 25.0%
! AGTAGGAAAACTAATGAATT+TGG - chr7_3:56668251-56668270 None:intergenic 25.0%
! AATGAGACGATTAAAACAAA+TGG - chr7_3:56668288-56668307 None:intergenic 25.0%
!!! TTTAATCGTCTCATTTTTTC+AGG + chr7_3:56668293-56668312 Msa1111090:intron 25.0%
! CAAAATCTCAAACTGAATAA+TGG - chr7_3:56668524-56668543 None:intergenic 25.0%
!!! TAATACTGATTTTGTGATAC+GGG - chr7_3:56668685-56668704 None:intergenic 25.0%
! ATTAAGGTTATTGGAAATAC+TGG + chr7_3:56668959-56668978 Msa1111090:CDS 25.0%
!! TTGGTTAGTCGATATTAATT+TGG + chr7_3:56669640-56669659 Msa1111090:exon 25.0%
!!! TGTCTTTTTAAGTTTCACAA+AGG - chr7_3:56669726-56669745 None:intergenic 25.0%
GAAGACTAATGTGTGATTTA+TGG - chr7_3:56666783-56666802 None:intergenic 30.0%
TGAAGAGTTGTTTATCATTG+TGG - chr7_3:56666810-56666829 None:intergenic 30.0%
TAGAAGTAGAAGAACGAAAA+CGG - chr7_3:56666859-56666878 None:intergenic 30.0%
! TTTTCGTTCTTCTACTTCTA+GGG + chr7_3:56666859-56666878 Msa1111090:five_prime_UTR 30.0%
!!! ACTTCTAGGGTTTTGATTTA+TGG + chr7_3:56666872-56666891 Msa1111090:exon 30.0%
AATGGAAAATTTGAACCTAG+TGG - chr7_3:56666979-56666998 None:intergenic 30.0%
TCGAATTTCGCAATTAGTAA+AGG - chr7_3:56667172-56667191 None:intergenic 30.0%
! CTGATTGAATTTTCAGTGTT+TGG + chr7_3:56667293-56667312 Msa1111090:intron 30.0%
ATGATAAGCTATGAGTTACT+TGG + chr7_3:56667421-56667440 Msa1111090:intron 30.0%
ATACACTTGTGAGAAAATGA+TGG + chr7_3:56667466-56667485 Msa1111090:intron 30.0%
TGAGAAAATGATGGTTACTA+AGG + chr7_3:56667475-56667494 Msa1111090:intron 30.0%
! ATAATCTAGCTTATAGCAGA+TGG + chr7_3:56667528-56667547 Msa1111090:intron 30.0%
!! AGCTAGTTTATAGTTGATAG+CGG + chr7_3:56667557-56667576 Msa1111090:intron 30.0%
AATGATGACACAACATATTG+GGG - chr7_3:56667953-56667972 None:intergenic 30.0%
CAATGATGACACAACATATT+GGG - chr7_3:56667954-56667973 None:intergenic 30.0%
TCAATGATGACACAACATAT+TGG - chr7_3:56667955-56667974 None:intergenic 30.0%
ATGTCTTATACTGTGTAGAT+TGG + chr7_3:56668343-56668362 Msa1111090:intron 30.0%
AATCTCAAACTGAATAATGG+AGG - chr7_3:56668521-56668540 None:intergenic 30.0%
CTTCATATAAACCCTTACTA+TGG + chr7_3:56669049-56669068 Msa1111090:CDS 30.0%
GGCACATTATATATGATTGT+GGG - chr7_3:56669130-56669149 None:intergenic 30.0%
AGGCACATTATATATGATTG+TGG - chr7_3:56669131-56669150 None:intergenic 30.0%
TCATATATAATGTGCCTTCA+CGG + chr7_3:56669134-56669153 Msa1111090:CDS 30.0%
AAGAGCTTAGAATTCAATGT+AGG - chr7_3:56669406-56669425 None:intergenic 30.0%
! ATTCTATCCTTTTCTCCAAA+GGG - chr7_3:56669537-56669556 None:intergenic 30.0%
! AATTCTATCCTTTTCTCCAA+AGG - chr7_3:56669538-56669557 None:intergenic 30.0%
AAGGATAGAATTTGCCAATT+TGG + chr7_3:56669546-56669565 Msa1111090:CDS 30.0%
! GTTAGTCGATATTAATTTGG+CGG + chr7_3:56669643-56669662 Msa1111090:exon 30.0%
AAGGATACAATAAGTCTACA+AGG - chr7_3:56669692-56669711 None:intergenic 30.0%
CACAAAGGAAAAAAACAGAA+AGG - chr7_3:56669711-56669730 None:intergenic 30.0%
! GTTTAGGCATATTTGAAACA+AGG - chr7_3:56669842-56669861 None:intergenic 30.0%
!! TTGTTTCTGTAAAAGGGTTT+AGG - chr7_3:56669858-56669877 None:intergenic 30.0%
TTATGGTCTCAGAAATGTGA+GGG - chr7_3:56666766-56666785 None:intergenic 35.0%
TTTATGGTCTCAGAAATGTG+AGG - chr7_3:56666767-56666786 None:intergenic 35.0%
! GTTTTCGTTCTTCTACTTCT+AGG + chr7_3:56666858-56666877 Msa1111090:five_prime_UTR 35.0%
CTTTATGAACATTGTCGATG+AGG + chr7_3:56667103-56667122 Msa1111090:intron 35.0%
!!! TTTGTTGTTCATCGGTTTTG+TGG + chr7_3:56667200-56667219 Msa1111090:intron 35.0%
!!! TTCATCGGTTTTGTGGTAAA+TGG + chr7_3:56667207-56667226 Msa1111090:intron 35.0%
AACGTTTGTCTGCATTATTC+AGG + chr7_3:56668118-56668137 Msa1111090:intron 35.0%
TCATCTCATAACTACGCATT+GGG - chr7_3:56668194-56668213 None:intergenic 35.0%
TTCATCTCATAACTACGCAT+TGG - chr7_3:56668195-56668214 None:intergenic 35.0%
TCTTATACTGTGTAGATTGG+AGG + chr7_3:56668346-56668365 Msa1111090:intron 35.0%
CTTATACTGTGTAGATTGGA+GGG + chr7_3:56668347-56668366 Msa1111090:intron 35.0%
AACCATAGAGGAGATACAAT+AGG + chr7_3:56668453-56668472 Msa1111090:intron 35.0%
ATACTCCTTAAAACATGCAG+TGG - chr7_3:56668589-56668608 None:intergenic 35.0%
!! AGGTAGGTATGGAGTTTTAA+TGG - chr7_3:56668774-56668793 None:intergenic 35.0%
TCTTGAATCATATGATGCCT+TGG + chr7_3:56668808-56668827 Msa1111090:CDS 35.0%
GTGAATATGCAGATTGAGAA+TGG + chr7_3:56668830-56668849 Msa1111090:CDS 35.0%
!!! CTGTTTTGGTGGGAATATTA+AGG + chr7_3:56668943-56668962 Msa1111090:CDS 35.0%
GGTGGGAATATTAAGGTTAT+TGG + chr7_3:56668950-56668969 Msa1111090:CDS 35.0%
! TTTTCAAAGTGTGCTTTCCA+TGG + chr7_3:56669102-56669121 Msa1111090:CDS 35.0%
TTTCAAAGTGTGCTTTCCAT+GGG + chr7_3:56669103-56669122 Msa1111090:CDS 35.0%
!!! AAGTTTTGAATCACATGTGG+AGG - chr7_3:56669175-56669194 None:intergenic 35.0%
!!! GCTAAGTTTTGAATCACATG+TGG - chr7_3:56669178-56669197 None:intergenic 35.0%
CTGATAATAGAATTGCTGTG+TGG + chr7_3:56669260-56669279 Msa1111090:CDS 35.0%
!! AAATCCCATTGGTTTGAACA+CGG + chr7_3:56669456-56669475 Msa1111090:CDS 35.0%
! AGAATTTGCCAATTTGGTGA+AGG + chr7_3:56669552-56669571 Msa1111090:CDS 35.0%
ACCAATTTCCTTCACCAAAT+TGG - chr7_3:56669563-56669582 None:intergenic 35.0%
! ATTTGGCGGTTAGTTGTTAT+TGG + chr7_3:56669657-56669676 Msa1111090:exon 35.0%
!! CGGTTAGTTGTTATTGGTTT+AGG + chr7_3:56669663-56669682 Msa1111090:three_prime_UTR 35.0%
!! GTGGGTTTGTTTCTGTAAAA+GGG - chr7_3:56669864-56669883 None:intergenic 35.0%
GAAGAACAAGCTCTTGATTA+TGG + chr7_3:56669933-56669952 Msa1111090:three_prime_UTR 35.0%
GCTACATTCAAGACCTATAC+TGG + chr7_3:56666894-56666913 Msa1111090:CDS 40.0%
GTAACATTGGAAGGATGAAG+CGG - chr7_3:56666945-56666964 None:intergenic 40.0%
TTGTCAGTGGTAACATTGGA+AGG - chr7_3:56666954-56666973 None:intergenic 40.0%
!! GGTTTTGTCAGTGGTAACAT+TGG - chr7_3:56666958-56666977 None:intergenic 40.0%
TTACCACTGACAAAACCACT+AGG + chr7_3:56666961-56666980 Msa1111090:CDS 40.0%
ATGGTGATCTACTAGAGTGA+AGG + chr7_3:56667226-56667245 Msa1111090:intron 40.0%
TCGTACATGAAGACAGATAC+AGG - chr7_3:56668023-56668042 None:intergenic 40.0%
TGTATCTGTCTTCATGTACG+AGG + chr7_3:56668022-56668041 Msa1111090:intron 40.0%
CATTATTCAGGAACTCTTCC+TGG + chr7_3:56668130-56668149 Msa1111090:intron 40.0%
AACTGTAGAATGCATGCTCT+GGG + chr7_3:56668377-56668396 Msa1111090:intron 40.0%
GATCTGTGATGAAACCATAG+AGG + chr7_3:56668441-56668460 Msa1111090:intron 40.0%
AGCCTATTGTATCTCCTCTA+TGG - chr7_3:56668458-56668477 None:intergenic 40.0%
! CTGTACCACTGCATGTTTTA+AGG + chr7_3:56668581-56668600 Msa1111090:intron 40.0%
AAAGTGGTCTCATGTGTTTC+TGG + chr7_3:56668615-56668634 Msa1111090:intron 40.0%
TATTTACAGGACTTGTACCG+AGG + chr7_3:56668721-56668740 Msa1111090:intron 40.0%
TCTCAGACACTTTATGTCCT+CGG - chr7_3:56668741-56668760 None:intergenic 40.0%
AAAACTCCATACCTACCTGA+CGG + chr7_3:56668776-56668795 Msa1111090:CDS 40.0%
CTCAATCTGCATATTCACCA+AGG - chr7_3:56668828-56668847 None:intergenic 40.0%
CAGATTGAGAATGGAGTTGA+AGG + chr7_3:56668839-56668858 Msa1111090:CDS 40.0%
!! GGAGTTGAAGGTGTTATTGT+TGG + chr7_3:56668851-56668870 Msa1111090:CDS 40.0%
!! GTTGAAGGTGTTATTGTTGG+TGG + chr7_3:56668854-56668873 Msa1111090:CDS 40.0%
TGAAGGCCAACTAATGAACT+GGG + chr7_3:56668886-56668905 Msa1111090:CDS 40.0%
ATTCCCACCAAAACAGTTGA+CGG - chr7_3:56668939-56668958 None:intergenic 40.0%
! AGGAGGTTTTGCCATAGTAA+GGG - chr7_3:56669063-56669082 None:intergenic 40.0%
! AAGGAGGTTTTGCCATAGTA+AGG - chr7_3:56669064-56669083 None:intergenic 40.0%
TTACTATGGCAAAACCTCCT+TGG + chr7_3:56669063-56669082 Msa1111090:CDS 40.0%
TTCAAAGTGTGCTTTCCATG+GGG + chr7_3:56669104-56669123 Msa1111090:CDS 40.0%
! CTTAGCTCAAAGTACTTGCT+TGG + chr7_3:56669192-56669211 Msa1111090:CDS 40.0%
AGGAATGTATGGGAAATGAC+AGG + chr7_3:56669224-56669243 Msa1111090:CDS 40.0%
GGAATGTATGGGAAATGACA+GGG + chr7_3:56669225-56669244 Msa1111090:CDS 40.0%
AATAGAATTGCTGTGTGGAG+TGG + chr7_3:56669265-56669284 Msa1111090:CDS 40.0%
ATAGAATTGCTGTGTGGAGT+GGG + chr7_3:56669266-56669285 Msa1111090:CDS 40.0%
GTTGCAAGCAATTTGATTCC+AGG + chr7_3:56669346-56669365 Msa1111090:CDS 40.0%
TTAATGCGAGAGCTCATGTT+TGG + chr7_3:56669370-56669389 Msa1111090:CDS 40.0%
TAATGCGAGAGCTCATGTTT+GGG + chr7_3:56669371-56669390 Msa1111090:CDS 40.0%
TGGAAAAGCCAGTCAATCAA+AGG - chr7_3:56669430-56669449 None:intergenic 40.0%
GTGTTCAAACCAATGGGATT+TGG - chr7_3:56669457-56669476 None:intergenic 40.0%
! GCCAATTTGGTGAAGGAAAT+TGG + chr7_3:56669559-56669578 Msa1111090:CDS 40.0%
! ATTGGTCGACAGCATTTTGT+TGG + chr7_3:56669577-56669596 Msa1111090:CDS 40.0%
!! TGATGACGACGACTTTTTCT+TGG + chr7_3:56669621-56669640 Msa1111090:CDS 40.0%
!! GGTGGGTTTGTTTCTGTAAA+AGG - chr7_3:56669865-56669884 None:intergenic 40.0%
!! ACCTCTAAAATTGCATGGGT+GGG - chr7_3:56669882-56669901 None:intergenic 40.0%
!! GTCCACCTCTAAAATTGCAT+GGG - chr7_3:56669886-56669905 None:intergenic 40.0%
!! TGTCCACCTCTAAAATTGCA+TGG - chr7_3:56669887-56669906 None:intergenic 40.0%
TGTGAAGCATACGCCAGTAT+AGG - chr7_3:56666910-56666929 None:intergenic 45.0%
TATACTGGCGTATGCTTCAC+AGG + chr7_3:56666909-56666928 Msa1111090:CDS 45.0%
!!! GAACCTAGTGGTTTTGTCAG+TGG - chr7_3:56666967-56666986 None:intergenic 45.0%
TCTACTAGAGTGAAGGACTC+TGG + chr7_3:56667233-56667252 Msa1111090:intron 45.0%
CACAACATATTGGGGCTCTT+CGG - chr7_3:56667945-56667964 None:intergenic 45.0%
GATTTCACAGCTGCTTGTGT+AGG - chr7_3:56668159-56668178 None:intergenic 45.0%
TCTCATAACTACGCATTGGG+AGG - chr7_3:56668191-56668210 None:intergenic 45.0%
GAACTGTAGAATGCATGCTC+TGG + chr7_3:56668376-56668395 Msa1111090:intron 45.0%
!! CTCATGTGTTTCTGGCATCA+TGG + chr7_3:56668623-56668642 Msa1111090:intron 45.0%
TCAAGATCAAATCGACCGTC+AGG - chr7_3:56668794-56668813 None:intergenic 45.0%
!! GTTATTGTTGGTGGCACAAC+TGG + chr7_3:56668863-56668882 Msa1111090:CDS 45.0%
GTGAAGGCCAACTAATGAAC+TGG + chr7_3:56668885-56668904 Msa1111090:CDS 45.0%
GCTCTTCCCAGTTCATTAGT+TGG - chr7_3:56668895-56668914 None:intergenic 45.0%
!!! ACACCGTCAACTGTTTTGGT+GGG + chr7_3:56668933-56668952 Msa1111090:CDS 45.0%
ATACTGGAAGCAACTCAACC+AGG + chr7_3:56668975-56668994 Msa1111090:CDS 45.0%
TACTGGAAGCAACTCAACCA+GGG + chr7_3:56668976-56668995 Msa1111090:CDS 45.0%
AGTTGCATGAATTGCTTCCC+TGG - chr7_3:56668996-56669015 None:intergenic 45.0%
AGCAATTCATGCAACTGAGC+AGG + chr7_3:56669000-56669019 Msa1111090:CDS 45.0%
GCAATTCATGCAACTGAGCA+GGG + chr7_3:56669001-56669020 Msa1111090:CDS 45.0%
TATGGCAAAACCTCCTTGGA+AGG + chr7_3:56669067-56669086 Msa1111090:CDS 45.0%
CAAAACCTCCTTGGAAGGTA+TGG + chr7_3:56669072-56669091 Msa1111090:CDS 45.0%
ATGAGCAACCATACCTTCCA+AGG - chr7_3:56669083-56669102 None:intergenic 45.0%
ATATATGATTGTGGGCCCCA+TGG - chr7_3:56669122-56669141 None:intergenic 45.0%
TATAATGTGCCTTCACGGAC+TGG + chr7_3:56669139-56669158 Msa1111090:CDS 45.0%
! GCTGGTGTCAAGGAATGTAT+GGG + chr7_3:56669214-56669233 Msa1111090:CDS 45.0%
ATGAATGCCACGATGCTAGA+TGG + chr7_3:56669296-56669315 Msa1111090:CDS 45.0%
TGAATGCCACGATGCTAGAT+GGG + chr7_3:56669297-56669316 Msa1111090:CDS 45.0%
ACGATGCTAGATGGGGTTAT+GGG + chr7_3:56669305-56669324 Msa1111090:CDS 45.0%
ATGAGCTCTCGCATTAAACC+TGG - chr7_3:56669367-56669386 None:intergenic 45.0%
AATGCGAGAGCTCATGTTTG+GGG + chr7_3:56669372-56669391 Msa1111090:CDS 45.0%
AGCTCTTGCCTTTGATTGAC+TGG + chr7_3:56669419-56669438 Msa1111090:CDS 45.0%
TTCCACATGCCAAATCCCAT+TGG + chr7_3:56669445-56669464 Msa1111090:CDS 45.0%
AACCAATGGGATTTGGCATG+TGG - chr7_3:56669450-56669469 None:intergenic 45.0%
AGAGCCGTGTTCAAACCAAT+GGG - chr7_3:56669463-56669482 None:intergenic 45.0%
AAGAGCCGTGTTCAAACCAA+TGG - chr7_3:56669464-56669483 None:intergenic 45.0%
TTGCTCAACTTGGAGTTGTC+AGG + chr7_3:56669482-56669501 Msa1111090:CDS 45.0%
ACAAATGGCAGCCTGAAAAC+TGG - chr7_3:56669508-56669527 None:intergenic 45.0%
! TCCAAAGGGAGAGGTACAAA+TGG - chr7_3:56669523-56669542 None:intergenic 45.0%
! TACCTCTCCCTTTGGAGAAA+AGG + chr7_3:56669527-56669546 Msa1111090:CDS 45.0%
! ATCCTTTTCTCCAAAGGGAG+AGG - chr7_3:56669532-56669551 None:intergenic 45.0%
! ACCCACCCATGCAATTTTAG+AGG + chr7_3:56669878-56669897 Msa1111090:three_prime_UTR 45.0%
!! CACCTCTAAAATTGCATGGG+TGG - chr7_3:56669883-56669902 None:intergenic 45.0%
!! CACCCATGCAATTTTAGAGG+TGG + chr7_3:56669881-56669900 Msa1111090:three_prime_UTR 45.0%
! AGAAGCACGTACAGTAGTCC+TGG + chr7_3:56666734-56666753 Msa1111090:five_prime_UTR 50.0%
TGGTCTCAGAAATGTGAGGG+CGG - chr7_3:56666763-56666782 None:intergenic 50.0%
GGAAGGATGAAGCGGAAAAG+CGG - chr7_3:56666937-56666956 None:intergenic 50.0%
! GTAGAATGCATGCTCTGGGT+AGG + chr7_3:56668381-56668400 Msa1111090:intron 50.0%
! CATGCTCTGGGTAGGATTTC+TGG + chr7_3:56668389-56668408 Msa1111090:intron 50.0%
AATCGACCGTCAGGTAGGTA+TGG - chr7_3:56668785-56668804 None:intergenic 50.0%
GATCAAATCGACCGTCAGGT+AGG - chr7_3:56668790-56668809 None:intergenic 50.0%
!! CACACCGTCAACTGTTTTGG+TGG + chr7_3:56668932-56668951 Msa1111090:CDS 50.0%
! TGCAACTGAGCAGGGTTTTG+CGG + chr7_3:56669009-56669028 Msa1111090:CDS 50.0%
! GGTTTTGCGGTTGGAATGCA+TGG + chr7_3:56669022-56669041 Msa1111090:CDS 50.0%
AGCAACCATACCTTCCAAGG+AGG - chr7_3:56669080-56669099 None:intergenic 50.0%
ATGTCTTGACCAGTCCGTGA+AGG - chr7_3:56669151-56669170 None:intergenic 50.0%
! GCTCAAAGTACTTGCTTGGC+TGG + chr7_3:56669196-56669215 Msa1111090:CDS 50.0%
! TACTTGCTTGGCTGGTGTCA+AGG + chr7_3:56669204-56669223 Msa1111090:CDS 50.0%
! GGCTGGTGTCAAGGAATGTA+TGG + chr7_3:56669213-56669232 Msa1111090:CDS 50.0%
GAATGCCACGATGCTAGATG+GGG + chr7_3:56669298-56669317 Msa1111090:CDS 50.0%
CATAACCCCATCTAGCATCG+TGG - chr7_3:56669306-56669325 None:intergenic 50.0%
CACGATGCTAGATGGGGTTA+TGG + chr7_3:56669304-56669323 Msa1111090:CDS 50.0%
CGATGCTAGATGGGGTTATG+GGG + chr7_3:56669306-56669325 Msa1111090:CDS 50.0%
ATGCGAGAGCTCATGTTTGG+GGG + chr7_3:56669373-56669392 Msa1111090:CDS 50.0%
AACACGGCTCTTGCTCAACT+TGG + chr7_3:56669472-56669491 Msa1111090:CDS 50.0%
! GAGTTGTCAGGCCAGTTTTC+AGG + chr7_3:56669494-56669513 Msa1111090:CDS 50.0%
GCCATTTGTACCTCTCCCTT+TGG + chr7_3:56669519-56669538 Msa1111090:CDS 50.0%
TGTTGGAACTGAAGACGTCC+AGG + chr7_3:56669594-56669613 Msa1111090:CDS 50.0%
AGTCGTCGTCATCAAGAACC+TGG - chr7_3:56669615-56669634 None:intergenic 50.0%
GCTCTTCGGCAAGCACAGTA+AGG - chr7_3:56667931-56667950 None:intergenic 55.0%
AGCTGCTTGTGTAGGCTTCC+AGG - chr7_3:56668151-56668170 None:intergenic 55.0%
ACGCATTGGGAGGTGAGAAG+TGG - chr7_3:56668181-56668200 None:intergenic 55.0%
!! GTTGGTGGCACAACTGGTGA+AGG + chr7_3:56668869-56668888 Msa1111090:CDS 55.0%
! GCGCACACCGTCAACTGTTT+TGG + chr7_3:56668929-56668948 Msa1111090:CDS 55.0%
! ACTGAGCAGGGTTTTGCGGT+TGG + chr7_3:56669013-56669032 Msa1111090:CDS 55.0%
AGATGGGGTTATGGGGCTAC+TGG + chr7_3:56669313-56669332 Msa1111090:CDS 55.0%
GAAATGTGAGGGCGGCTGCC+AGG - chr7_3:56666755-56666774 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 56666708 56669982 56666708 ID=Msa1111090;Name=Msa1111090
chr7_3 mRNA 56666708 56669982 56666708 ID=Msa1111090-mRNA-1;Parent=Msa1111090;Name=Msa1111090-mRNA-1;_AED=0.01;_eAED=0.01;_QI=183|1|1|1|1|1|3|325|366
chr7_3 exon 56666708 56666982 56666708 ID=Msa1111090-mRNA-1:exon:11962;Parent=Msa1111090-mRNA-1
chr7_3 exon 56668140 56668220 56668140 ID=Msa1111090-mRNA-1:exon:11963;Parent=Msa1111090-mRNA-1
chr7_3 exon 56668730 56669982 56668730 ID=Msa1111090-mRNA-1:exon:11964;Parent=Msa1111090-mRNA-1
chr7_3 five_prime_UTR 56666708 56666890 56666708 ID=Msa1111090-mRNA-1:five_prime_utr;Parent=Msa1111090-mRNA-1
chr7_3 CDS 56666891 56666982 56666891 ID=Msa1111090-mRNA-1:cds;Parent=Msa1111090-mRNA-1
chr7_3 CDS 56668140 56668220 56668140 ID=Msa1111090-mRNA-1:cds;Parent=Msa1111090-mRNA-1
chr7_3 CDS 56668730 56669657 56668730 ID=Msa1111090-mRNA-1:cds;Parent=Msa1111090-mRNA-1
chr7_3 three_prime_UTR 56669658 56669982 56669658 ID=Msa1111090-mRNA-1:three_prime_utr;Parent=Msa1111090-mRNA-1
Gene Sequence

>Msa1111090

ATGGCTACATTCAAGACCTATACTGGCGTATGCTTCACAGGATCCGCTTTTCCGCTTCATCCTTCCAATGTTACCACTGACAAAACCACTAGGAACTCTTCCTGGAAGCCTACACAAGCAGCTGTGAAATCCACTTCTCACCTCCCAATGCGTAGTTATGAGATGAAAAATAGGACTTGTACCGAGGACATAAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGACGGTCGATTTGATCTTGAATCATATGATGCCTTGGTGAATATGCAGATTGAGAATGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGCCAACTAATGAACTGGGAAGAGCACATAATGCTTATTGCGCACACCGTCAACTGTTTTGGTGGGAATATTAAGGTTATTGGAAATACTGGAAGCAACTCAACCAGGGAAGCAATTCATGCAACTGAGCAGGGTTTTGCGGTTGGAATGCATGGTGCTCTTCATATAAACCCTTACTATGGCAAAACCTCCTTGGAAGGTATGGTTGCTCATTTTCAAAGTGTGCTTTCCATGGGGCCCACAATCATATATAATGTGCCTTCACGGACTGGTCAAGACATTCCTCCACATGTGATTCAAAACTTAGCTCAAAGTACTTGCTTGGCTGGTGTCAAGGAATGTATGGGAAATGACAGGGTTAAAGAGTATACTGATAATAGAATTGCTGTGTGGAGTGGGAACGATGATGAATGCCACGATGCTAGATGGGGTTATGGGGCTACTGGAGTGATATCTGTTGCAAGCAATTTGATTCCAGGTTTAATGCGAGAGCTCATGTTTGGGGGAAAAAATCCTACATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGCTGCCATTTGTACCTCTCCCTTTGGAGAAAAGGATAGAATTTGCCAATTTGGTGAAGGAAATTGGTCGACAGCATTTTGTTGGAACTGAAGACGTCCAGGTTCTTGATGACGACGACTTTTTCTTGGTTAGTCGATATTAA

Protein sequence

>Msa1111090

MATFKTYTGVCFTGSAFPLHPSNVTTDKTTRNSSWKPTQAAVKSTSHLPMRSYEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLESYDALVNMQIENGVEGVIVGGTTGEGQLMNWEEHIMLIAHTVNCFGGNIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLEGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQSTCLAGVKECMGNDRVKEYTDNRIAVWSGNDDECHDARWGYGATGVISVASNLIPGLMRELMFGGKNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLEKRIEFANLVKEIGRQHFVGTEDVQVLDDDDFFLVSRY*