Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441840 | XP_013458822.1 | 97.421 | 349 | 3 | 2 | 1 | 344 | 1 | 348 | 0.0 | 686 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441840 | sp|Q29Q26|AKR2B_ARATH | 64.957 | 351 | 109 | 4 | 1 | 344 | 1 | 344 | 4.41e-154 | 439 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441840 | A0A072USU9 | 97.421 | 349 | 3 | 2 | 1 | 344 | 1 | 348 | 0.0 | 686 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0168370 | Msa0441840 | 0.803089 | 4.117092e-49 | -8.615850e-47 |
| Msa0394010 | Msa0441840 | 0.915867 | 3.531112e-85 | -8.615850e-47 |
| Msa0441840 | Msa0489460 | 0.961255 | 1.720489e-119 | -8.615850e-47 |
| Msa0441840 | Msa1355490 | 0.806409 | 8.342985e-50 | -8.615850e-47 |
| Msa0347400 | Msa0441840 | 0.811774 | 5.916592e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441840 | MtrunA17_Chr3g0079591 | 97.421 | 349 | 3 | 2 | 1 | 344 | 1 | 348 | 0.0 | 686 |
| Msa0441840 | MtrunA17_Chr3g0142201 | 56.846 | 241 | 90 | 6 | 1 | 234 | 1 | 234 | 2.38e-81 | 253 |
| Msa0441840 | MtrunA17_Chr6g0463271 | 45.798 | 238 | 102 | 6 | 1 | 234 | 1 | 215 | 9.39e-53 | 178 |
| Msa0441840 | MtrunA17_Chr1g0176011 | 57.895 | 171 | 54 | 4 | 50 | 220 | 18 | 170 | 1.15e-51 | 176 |
| Msa0441840 | MtrunA17_Chr3g0142931 | 49.223 | 193 | 75 | 5 | 42 | 234 | 39 | 208 | 1.65e-49 | 170 |
| Msa0441840 | MtrunA17_Chr1g0175931 | 56.725 | 171 | 56 | 4 | 50 | 220 | 18 | 170 | 8.34e-49 | 167 |
| Msa0441840 | MtrunA17_Chr1g0175951 | 59.184 | 147 | 58 | 2 | 74 | 220 | 2 | 146 | 1.67e-47 | 164 |
| Msa0441840 | MtrunA17_Chr3g0144061 | 57.426 | 101 | 38 | 2 | 136 | 234 | 1 | 98 | 3.52e-31 | 114 |
| Msa0441840 | MtrunA17_Chr1g0175991 | 51.079 | 139 | 48 | 5 | 50 | 188 | 34 | 152 | 8.50e-30 | 115 |
| Msa0441840 | MtrunA17_Chr4g0065471 | 44.444 | 108 | 43 | 3 | 178 | 279 | 26 | 122 | 8.10e-16 | 76.3 |
| Msa0441840 | MtrunA17_Chr5g0418551 | 38.235 | 136 | 82 | 1 | 203 | 338 | 75 | 208 | 3.50e-15 | 74.3 |
| Msa0441840 | MtrunA17_Chr1g0187681 | 34.400 | 125 | 79 | 2 | 223 | 344 | 10 | 134 | 5.19e-13 | 69.7 |
| Msa0441840 | MtrunA17_Chr6g0461061 | 37.000 | 100 | 62 | 1 | 240 | 338 | 230 | 329 | 3.31e-12 | 67.4 |
| Msa0441840 | MtrunA17_Chr1g0180301 | 37.705 | 122 | 66 | 4 | 226 | 338 | 43 | 163 | 3.73e-12 | 64.7 |
| Msa0441840 | MtrunA17_Chr3g0082141 | 31.544 | 149 | 88 | 3 | 180 | 326 | 665 | 801 | 1.50e-11 | 65.9 |
| Msa0441840 | MtrunA17_Chr3g0082141 | 31.944 | 144 | 77 | 4 | 200 | 322 | 440 | 583 | 7.07e-11 | 63.9 |
| Msa0441840 | MtrunA17_Chr3g0125011 | 33.929 | 112 | 72 | 1 | 215 | 324 | 13 | 124 | 2.98e-11 | 61.2 |
| Msa0441840 | MtrunA17_Chr1g0196261 | 37.113 | 97 | 60 | 1 | 228 | 323 | 348 | 444 | 5.04e-11 | 63.5 |
| Msa0441840 | MtrunA17_Chr4g0038681 | 45.570 | 79 | 42 | 1 | 250 | 327 | 154 | 232 | 8.87e-11 | 62.8 |
| Msa0441840 | MtrunA17_Chr1g0164551 | 31.544 | 149 | 88 | 3 | 180 | 326 | 227 | 363 | 9.42e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0441840 | AT2G17390.1 | 64.957 | 351 | 109 | 4 | 1 | 344 | 1 | 344 | 4.49e-155 | 439 |
| Msa0441840 | AT4G35450.2 | 64.368 | 348 | 114 | 6 | 1 | 344 | 1 | 342 | 1.22e-149 | 425 |
| Msa0441840 | AT4G35450.3 | 64.368 | 348 | 114 | 6 | 1 | 344 | 1 | 342 | 1.22e-149 | 425 |
| Msa0441840 | AT4G35450.1 | 64.368 | 348 | 114 | 6 | 1 | 344 | 1 | 342 | 1.22e-149 | 425 |
| Msa0441840 | AT4G35450.5 | 63.202 | 356 | 113 | 7 | 1 | 344 | 1 | 350 | 4.17e-147 | 419 |
| Msa0441840 | AT4G35450.4 | 67.647 | 306 | 94 | 3 | 41 | 344 | 2 | 304 | 1.26e-146 | 416 |
| Msa0441840 | AT2G03430.1 | 37.705 | 122 | 74 | 1 | 202 | 323 | 67 | 186 | 1.00e-14 | 73.2 |
| Msa0441840 | AT3G23280.1 | 34.400 | 125 | 79 | 2 | 223 | 344 | 10 | 134 | 1.11e-13 | 72.0 |
| Msa0441840 | AT3G23280.2 | 34.400 | 125 | 79 | 2 | 223 | 344 | 10 | 134 | 1.15e-13 | 72.0 |
| Msa0441840 | AT5G53470.1 | 34.615 | 104 | 68 | 0 | 224 | 327 | 222 | 325 | 2.41e-13 | 70.5 |
| Msa0441840 | AT5G12320.1 | 33.333 | 117 | 76 | 1 | 210 | 326 | 3 | 117 | 4.50e-12 | 63.5 |
| Msa0441840 | AT4G27780.1 | 32.593 | 135 | 79 | 3 | 205 | 327 | 206 | 340 | 8.06e-12 | 66.2 |
| Msa0441840 | AT2G47450.1 | 45.238 | 84 | 45 | 1 | 245 | 327 | 152 | 235 | 2.62e-11 | 64.7 |
| Msa0441840 | AT3G04710.3 | 38.400 | 125 | 75 | 2 | 216 | 340 | 310 | 432 | 5.73e-11 | 64.3 |
| Msa0441840 | AT3G04710.2 | 38.400 | 125 | 75 | 2 | 216 | 340 | 86 | 208 | 8.97e-11 | 63.2 |
| Msa0441840 | AT3G04710.1 | 38.400 | 125 | 75 | 2 | 216 | 340 | 86 | 208 | 9.31e-11 | 63.2 |
Find 99 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGCTGAACTTTAT+TGG | 0.122980 | 3_3:-10325994 | None:intergenic |
| TCTTCTTCTTCTTCAGATTC+AGG | 0.165026 | 3_3:+10323932 | Msa0441840:five_prime_UTR |
| GCTGCTTCTTCTGAAAATTC+TGG | 0.165755 | 3_3:+10326284 | Msa0441840:CDS |
| TTGCAGTACTCTGCAAAATA+TGG | 0.286124 | 3_3:+10328211 | Msa0441840:intron |
| TTTAATTTCGCAACATCTAT+AGG | 0.306488 | 3_3:-10328245 | None:intergenic |
| TCAGCCATGGTCATAAAATT+AGG | 0.317600 | 3_3:-10325822 | None:intergenic |
| CATGCATGCCTTGCAATTAC+AGG | 0.322895 | 3_3:-10328310 | None:intergenic |
| GATTCATCTTCTGTTTCATC+TGG | 0.324823 | 3_3:-10326308 | None:intergenic |
| CTTCATTATGCAGCAGGTTA+TGG | 0.341988 | 3_3:+10328015 | Msa0441840:CDS |
| TCTCAAAAGGATATTCCTTC+TGG | 0.350480 | 3_3:+10324129 | Msa0441840:CDS |
| GTTGTCGCAAAATTCTCTTT+TGG | 0.359269 | 3_3:+10328562 | Msa0441840:three_prime_UTR |
| TATGACCATGGCTGAGCGCC+TGG | 0.371236 | 3_3:+10325830 | Msa0441840:CDS |
| TGGAAAACCGGTCCCAGGTC+CGG | 0.375249 | 3_3:-10324940 | None:intergenic |
| AGAGAGAATGGCACGCATAA+AGG | 0.386835 | 3_3:+10326013 | Msa0441840:CDS |
| CTCATTGCTGAGAAATCAAA+AGG | 0.392741 | 3_3:-10324987 | None:intergenic |
| CTGCTTCTTCTGAAAATTCT+GGG | 0.395319 | 3_3:+10326285 | Msa0441840:CDS |
| TCAGCCAATTCCTTGATACT+TGG | 0.405646 | 3_3:-10325657 | None:intergenic |
| GGATCCAAGTATCAAGGAAT+TGG | 0.418761 | 3_3:+10325653 | Msa0441840:intron |
| TACTGCTGATTATCAAAGTT+AGG | 0.425274 | 3_3:-10325768 | None:intergenic |
| CTGAACTTTATTGGACGGAT+TGG | 0.428989 | 3_3:-10325985 | None:intergenic |
| ACCAGTCCCAGGTGGAAAAC+CGG | 0.440893 | 3_3:-10324952 | None:intergenic |
| TTGAAAGCTGCGCTAGCCTC+TGG | 0.443610 | 3_3:+10327344 | Msa0441840:CDS |
| AGGTCCGGGAGTTGCGTTCG+AGG | 0.459739 | 3_3:-10324925 | None:intergenic |
| GCGCAAGCTCTCCTTGAGGC+TGG | 0.462394 | 3_3:+10327952 | Msa0441840:CDS |
| GGAAAACCGGTCCCAGGTCC+GGG | 0.463114 | 3_3:-10324939 | None:intergenic |
| TCGAACGCAACTCCCGGACC+TGG | 0.465039 | 3_3:+10324927 | Msa0441840:CDS |
| ATGGGCATTCCTCCAACCTC+TGG | 0.465285 | 3_3:+10326254 | Msa0441840:CDS |
| TCTAAAATATGTTTCAAAGA+TGG | 0.467672 | 3_3:-10326041 | None:intergenic |
| TGGAGCAAAAGTAGATGCTT+TGG | 0.468103 | 3_3:+10327972 | Msa0441840:CDS |
| TATCTAGGTTTCTTCGCTCA+TGG | 0.468456 | 3_3:+10324098 | Msa0441840:intron |
| GAAGAAGTTGGGACTAGCCA+TGG | 0.471435 | 3_3:+10326235 | Msa0441840:CDS |
| GAAGAAGAAGAAGAGCGATA+AGG | 0.472336 | 3_3:-10323911 | None:intergenic |
| GTATCTTTCATCCATGCAAC+AGG | 0.477789 | 3_3:+10325788 | Msa0441840:CDS |
| AAAAGAAAATGGAAACTTGA+GGG | 0.478831 | 3_3:+10328354 | Msa0441840:three_prime_UTR |
| GAGAAATCAAAAGGGTTGGC+TGG | 0.479871 | 3_3:-10324978 | None:intergenic |
| TATCAAGATTAGCGCCGTAA+TGG | 0.480898 | 3_3:+10328502 | Msa0441840:three_prime_UTR |
| CATGGCTTCCAATTCTCAAA+AGG | 0.488909 | 3_3:+10324116 | Msa0441840:exon |
| AAACATCTTTCTCAAGAAGC+TGG | 0.492614 | 3_3:-10328286 | None:intergenic |
| GCTAGCCTCTGGTGCTGATA+AGG | 0.495452 | 3_3:+10327355 | Msa0441840:CDS |
| TAATGAGATCCAGATCTGTT+GGG | 0.509322 | 3_3:+10328605 | Msa0441840:three_prime_UTR |
| ACAGCTCTTCATTATGCAGC+AGG | 0.511661 | 3_3:+10328009 | Msa0441840:CDS |
| TCAACGAAATGAAACCATTA+CGG | 0.513851 | 3_3:-10328516 | None:intergenic |
| ACTGCTGATTATCAAAGTTA+GGG | 0.515114 | 3_3:-10325767 | None:intergenic |
| AGTTCAGCTTGAAGAGAGAA+TGG | 0.515247 | 3_3:+10326001 | Msa0441840:CDS |
| ATAATGAGATCCAGATCTGT+TGG | 0.519485 | 3_3:+10328604 | Msa0441840:three_prime_UTR |
| ATTATGCAGCAGGTTATGGC+AGG | 0.522371 | 3_3:+10328019 | Msa0441840:CDS |
| TTCATCCATGCAACAGGTCA+TGG | 0.523490 | 3_3:+10325794 | Msa0441840:CDS |
| GCAGCTGCATCTCCAGAGGT+TGG | 0.525843 | 3_3:-10326266 | None:intergenic |
| GCAACTCCCGGACCTGGGAC+CGG | 0.525973 | 3_3:+10324933 | Msa0441840:CDS |
| ATTGGTAAAACTTTCAAGCA+TGG | 0.527566 | 3_3:-10325967 | None:intergenic |
| GTCACAGGATCCAAGTATCA+AGG | 0.533298 | 3_3:+10325647 | Msa0441840:intron |
| TTTGATTTCTCAGCAATGAG+TGG | 0.534737 | 3_3:+10324990 | Msa0441840:CDS |
| TGCTGAGAAATCAAAAGGGT+TGG | 0.535067 | 3_3:-10324982 | None:intergenic |
| CCAGGTGGAAAACCGGTCCC+AGG | 0.535701 | 3_3:-10324945 | None:intergenic |
| GTGGCCTTGCTCCTTGAAAA+CGG | 0.539036 | 3_3:+10328051 | Msa0441840:CDS |
| CCTGGGTAATGCATTGATGC+AGG | 0.543657 | 3_3:+10325848 | Msa0441840:CDS |
| CGAACGCAACTCCCGGACCT+GGG | 0.544955 | 3_3:+10324928 | Msa0441840:CDS |
| TCAAGCTGAACTTTATTGGA+CGG | 0.545387 | 3_3:-10325990 | None:intergenic |
| AGATCCATCATTCAATCAGA+TGG | 0.548584 | 3_3:+10325692 | Msa0441840:CDS |
| CAGCTTCAGAAAACTTTGCA+TGG | 0.549622 | 3_3:+10325720 | Msa0441840:CDS |
| ACATCCTCGAACGCAACTCC+CGG | 0.550672 | 3_3:+10324921 | Msa0441840:CDS |
| ATGACCATGGCTGAGCGCCT+GGG | 0.553159 | 3_3:+10325831 | Msa0441840:CDS |
| TTTGCATGGAGGAGCACCAC+AGG | 0.559317 | 3_3:+10325734 | Msa0441840:CDS |
| AGTACTCTGCAAAATATGGA+TGG | 0.567263 | 3_3:+10328215 | Msa0441840:intron |
| ATTTGCCATGACCTGTTGCA+TGG | 0.569040 | 3_3:-10325799 | None:intergenic |
| GTTCATCATACTGCTAGTGT+TGG | 0.576940 | 3_3:+10326335 | Msa0441840:CDS |
| AAGAAGTTGGGACTAGCCAT+GGG | 0.580948 | 3_3:+10326236 | Msa0441840:CDS |
| GCTGCATCTCCAGAGGTTGG+AGG | 0.582935 | 3_3:-10326263 | None:intergenic |
| CAAGCATGGAAGACATCGAT+GGG | 0.587730 | 3_3:-10325953 | None:intergenic |
| ATAAACCTCATCATTACAGC+AGG | 0.589232 | 3_3:-10326083 | None:intergenic |
| TCAGCCATCTGATTGAATGA+TGG | 0.589706 | 3_3:-10325696 | None:intergenic |
| TAAGGATGAAGAAGATTCAG+AGG | 0.591403 | 3_3:+10327373 | Msa0441840:CDS |
| TAATTGCAAGGCATGCATGA+TGG | 0.592113 | 3_3:+10328314 | Msa0441840:exon |
| TTGGCTGGAAAACCAGTCCC+AGG | 0.592571 | 3_3:-10324963 | None:intergenic |
| TCAAGCATGGAAGACATCGA+TGG | 0.593586 | 3_3:-10325954 | None:intergenic |
| GTACTCTGCAAAATATGGAT+GGG | 0.595986 | 3_3:+10328216 | Msa0441840:intron |
| AGAAGCAGCTGCATCTCCAG+AGG | 0.600724 | 3_3:-10326270 | None:intergenic |
| TGCAGCAGGTTATGGCAGGA+AGG | 0.601460 | 3_3:+10328023 | Msa0441840:CDS |
| AAGGATGAAGAAGATTCAGA+GGG | 0.609631 | 3_3:+10327374 | Msa0441840:CDS |
| ATTACCCAGGCGCTCAGCCA+TGG | 0.617162 | 3_3:-10325835 | None:intergenic |
| TTCATCCTTATCAGCACCAG+AGG | 0.620315 | 3_3:-10327360 | None:intergenic |
| TGCTAGTGTTGGTGACATTG+AGG | 0.628525 | 3_3:+10326346 | Msa0441840:CDS |
| TCATTGCTGAGAAATCAAAA+GGG | 0.629369 | 3_3:-10324986 | None:intergenic |
| AAAGAAAATGGAAACTTGAG+GGG | 0.632524 | 3_3:+10328355 | Msa0441840:three_prime_UTR |
| CATGGAGGAGCACCACAGGA+TGG | 0.634179 | 3_3:+10325738 | Msa0441840:CDS |
| AGACGAGAAAGCTGGTTCAG+CGG | 0.641290 | 3_3:+10324875 | Msa0441840:intron |
| TAGATACTGGAATGATGAGG+AGG | 0.645865 | 3_3:+10326208 | Msa0441840:intron |
| CCTGCATCAATGCATTACCC+AGG | 0.649558 | 3_3:-10325848 | None:intergenic |
| AGAGGTTGGAGGAATGCCCA+TGG | 0.656046 | 3_3:-10326252 | None:intergenic |
| ATCTAGATACTGGAATGATG+AGG | 0.659169 | 3_3:+10326205 | Msa0441840:intron |
| GGAGGAGCACCACAGGATGG+TGG | 0.665535 | 3_3:+10325741 | Msa0441840:CDS |
| CATCTTTCTCAAGAAGCTGG+AGG | 0.671030 | 3_3:-10328283 | None:intergenic |
| TTATGGCAGGAAGGAATGTG+TGG | 0.674267 | 3_3:+10328032 | Msa0441840:CDS |
| TTAGGGAGACCACCATCCTG+TGG | 0.684695 | 3_3:-10325750 | None:intergenic |
| GCTGGAAAACCAGTCCCAGG+TGG | 0.687890 | 3_3:-10324960 | None:intergenic |
| GTGTGCGCAAGCTCTCCTTG+AGG | 0.688818 | 3_3:+10327948 | Msa0441840:CDS |
| GCGGTCCTGCTGTAATGATG+AGG | 0.692207 | 3_3:+10326078 | Msa0441840:CDS |
| CTTCAGAAAACTTTGCATGG+AGG | 0.695368 | 3_3:+10325723 | Msa0441840:CDS |
| TTAGATGAGATAGAGAATGG+CGG | 0.730427 | 3_3:+10326059 | Msa0441840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTCTTTTTTAAAAA+TGG | - | chr3_3:10326112-10326131 | None:intergenic | 10.0% |
| !!! | AAAAAGAAAATCATATTTTA+TGG | + | chr3_3:10326118-10326137 | Msa0441840:intron | 10.0% |
| !!! | GTTATAAATAAGAAATTTTA+TGG | - | chr3_3:10328450-10328469 | None:intergenic | 10.0% |
| !! | AGCAAAATTAAGAATAATTA+AGG | - | chr3_3:10323980-10323999 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTTTTTTTTTTG+TGG | + | chr3_3:10324306-10324325 | Msa0441840:intron | 15.0% |
| !! | ATCTTTGTAATAATCATTTA+AGG | + | chr3_3:10325421-10325440 | Msa0441840:intron | 15.0% |
| !!! | TAGTTAAATAGTTTTATACA+TGG | - | chr3_3:10325595-10325614 | None:intergenic | 15.0% |
| !!! | AAAATCATATTTTATGGTTT+TGG | + | chr3_3:10326124-10326143 | Msa0441840:intron | 15.0% |
| !! | AAATTTAAAGAGATGAAAAT+AGG | + | chr3_3:10326502-10326521 | Msa0441840:intron | 15.0% |
| !! | ATAAATAAATAATACAATGG+TGG | - | chr3_3:10327268-10327287 | None:intergenic | 15.0% |
| !! | CCATTGTATTATTTATTTAT+CGG | + | chr3_3:10327268-10327287 | Msa0441840:intron | 15.0% |
| !! | AAAAACGAATAACAATTTCT+AGG | - | chr3_3:10324072-10324091 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTTGTTCACTAT+CGG | + | chr3_3:10324203-10324222 | Msa0441840:intron | 20.0% |
| !! | TGTACAAAAAAAACATAATC+AGG | - | chr3_3:10324263-10324282 | None:intergenic | 20.0% |
| !! | ACATAATTGAATATAATCAC+AGG | + | chr3_3:10324403-10324422 | Msa0441840:intron | 20.0% |
| !! | CATATTAGTAAAAATCACAT+AGG | - | chr3_3:10324623-10324642 | None:intergenic | 20.0% |
| !!! | CTATGTGATTTTTACTAATA+TGG | + | chr3_3:10324621-10324640 | Msa0441840:intron | 20.0% |
| !! | TATTTGTATAGACAATACAA+AGG | + | chr3_3:10324654-10324673 | Msa0441840:intron | 20.0% |
| !! | ATTTGTATAGACAATACAAA+GGG | + | chr3_3:10324655-10324674 | Msa0441840:intron | 20.0% |
| !!! | CAAAATTAGTAAAGTGTTAT+TGG | - | chr3_3:10324752-10324771 | None:intergenic | 20.0% |
| !! | TACATCAATAACAATTAACA+GGG | - | chr3_3:10325098-10325117 | None:intergenic | 20.0% |
| !! | TTACATCAATAACAATTAAC+AGG | - | chr3_3:10325099-10325118 | None:intergenic | 20.0% |
| !! | AATACTATTATGATCCAAAT+TGG | - | chr3_3:10325386-10325405 | None:intergenic | 20.0% |
| !!! | TTTATTGAAGAGTTTAAGTT+AGG | + | chr3_3:10325461-10325480 | Msa0441840:intron | 20.0% |
| !! | TATAAAACTATTTAACTACG+TGG | + | chr3_3:10325597-10325616 | Msa0441840:intron | 20.0% |
| !! | ATACATTCTTATCTAACAAT+CGG | - | chr3_3:10325915-10325934 | None:intergenic | 20.0% |
| !!! | TCTAAAATATGTTTCAAAGA+TGG | - | chr3_3:10326044-10326063 | None:intergenic | 20.0% |
| !! | ATTTACATAACAAATTATGG+TGG | - | chr3_3:10326155-10326174 | None:intergenic | 20.0% |
| !! | CCAATTTACATAACAAATTA+TGG | - | chr3_3:10326158-10326177 | None:intergenic | 20.0% |
| !!! | CCATAATTTGTTATGTAAAT+TGG | + | chr3_3:10326155-10326174 | Msa0441840:intron | 20.0% |
| !!! | ATGAAACTTTTTTGAATAGA+AGG | + | chr3_3:10326450-10326469 | Msa0441840:intron | 20.0% |
| !!! | TTGTTTAAGGTAATATCAAA+AGG | + | chr3_3:10326581-10326600 | Msa0441840:intron | 20.0% |
| !!! | AAACTGATATATTTTTCGAA+AGG | - | chr3_3:10326682-10326701 | None:intergenic | 20.0% |
| !!! | AGAATTTTATTTTTCTCAAG+AGG | - | chr3_3:10326755-10326774 | None:intergenic | 20.0% |
| !! | ATTACTATAATACTTATGCA+TGG | - | chr3_3:10326834-10326853 | None:intergenic | 20.0% |
| !!! | GTTTTATTTGTTTAATTCGA+AGG | + | chr3_3:10327152-10327171 | Msa0441840:intron | 20.0% |
| !! | CCGATAAATAAATAATACAA+TGG | - | chr3_3:10327271-10327290 | None:intergenic | 20.0% |
| !! | AGTATTTACACTAATCAATT+AGG | + | chr3_3:10327319-10327338 | Msa0441840:intron | 20.0% |
| !! | GTATTTACACTAATCAATTA+GGG | + | chr3_3:10327320-10327339 | Msa0441840:intron | 20.0% |
| !!! | TACATAAATTCTAAGAAACA+AGG | - | chr3_3:10327486-10327505 | None:intergenic | 20.0% |
| !!! | AGAATTTATGTATTTGTTGT+TGG | + | chr3_3:10327494-10327513 | Msa0441840:intron | 20.0% |
| !!! | TTCGTTTTTTTCAGATATCT+AGG | + | chr3_3:10324083-10324102 | Msa0441840:intron | 25.0% |
| ! | AATTATAGATAGATACCAGA+AGG | - | chr3_3:10324147-10324166 | None:intergenic | 25.0% |
| ! | TTACCTATAAAACACAAACA+TGG | + | chr3_3:10324334-10324353 | Msa0441840:intron | 25.0% |
| !!! | ATGTGCTTTAATTTTACTCT+TGG | + | chr3_3:10324842-10324861 | Msa0441840:intron | 25.0% |
| !!! | AAATTCTGAACTTTTTTCAG+AGG | + | chr3_3:10325251-10325270 | Msa0441840:intron | 25.0% |
| ! | AAAATGAAAAGAGAAAGAGT+CGG | - | chr3_3:10325527-10325546 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTCACTCACTA+GGG | + | chr3_3:10325537-10325556 | Msa0441840:intron | 25.0% |
| ! | TTAAAATGTCAATATGTCAC+AGG | + | chr3_3:10325632-10325651 | Msa0441840:intron | 25.0% |
| !! | AAATCCTAATTTTATGACCA+TGG | + | chr3_3:10325818-10325837 | Msa0441840:CDS | 25.0% |
| !! | ATTTTAGATGAGATAGAGAA+TGG | + | chr3_3:10326056-10326075 | Msa0441840:CDS | 25.0% |
| !! | AATTCTTTTCATCTAGATAC+TGG | + | chr3_3:10326195-10326214 | Msa0441840:intron | 25.0% |
| ! | AAAGCTTATAGAATGATAGT+TGG | - | chr3_3:10326639-10326658 | None:intergenic | 25.0% |
| !! | ACTATCATTCTATAAGCTTT+TGG | + | chr3_3:10326639-10326658 | Msa0441840:intron | 25.0% |
| !! | CTATCATTCTATAAGCTTTT+GGG | + | chr3_3:10326640-10326659 | Msa0441840:intron | 25.0% |
| !! | AACGTTGTGTTCTAATTTTA+GGG | - | chr3_3:10326916-10326935 | None:intergenic | 25.0% |
| !! | TAACGTTGTGTTCTAATTTT+AGG | - | chr3_3:10326917-10326936 | None:intergenic | 25.0% |
| !!! | CCAGTAAAACACAATTTTTT+GGG | + | chr3_3:10327047-10327066 | Msa0441840:intron | 25.0% |
| ! | TTAATCCATACATTGGAATT+TGG | - | chr3_3:10327900-10327919 | None:intergenic | 25.0% |
| !!! | GCATATTTTAATCCATACAT+TGG | - | chr3_3:10327907-10327926 | None:intergenic | 25.0% |
| !! | TTTAATTTCGCAACATCTAT+AGG | - | chr3_3:10328248-10328267 | None:intergenic | 25.0% |
| !! | TCAAGTTTCCATTTTCTTTT+TGG | - | chr3_3:10328354-10328373 | None:intergenic | 25.0% |
| ! | AAAAAGAAAATGGAAACTTG+AGG | + | chr3_3:10328353-10328372 | Msa0441840:three_prime_UTR | 25.0% |
| ! | AAAAGAAAATGGAAACTTGA+GGG | + | chr3_3:10328354-10328373 | Msa0441840:three_prime_UTR | 25.0% |
| !! | GAAAAAACAAAAGCATGATA+TGG | + | chr3_3:10328377-10328396 | Msa0441840:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTAACACAACGAT+GGG | - | chr3_3:10328419-10328438 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTTAACACAACGA+TGG | - | chr3_3:10328420-10328439 | None:intergenic | 25.0% |
| !! | AGGAATATCCTTTTGAGAAT+TGG | - | chr3_3:10324127-10324146 | None:intergenic | 30.0% |
| ! | TGTCCATGTTTGTGTTTTAT+AGG | - | chr3_3:10324340-10324359 | None:intergenic | 30.0% |
| ! | GAAGTGTGTTATTGTTGTAT+TGG | + | chr3_3:10324480-10324499 | Msa0441840:intron | 30.0% |
| AACACACTTATCATGATATC+TGG | - | chr3_3:10324515-10324534 | None:intergenic | 30.0% | |
| ! | TAAGTGTGTTATTGTCATGT+TGG | + | chr3_3:10324525-10324544 | Msa0441840:intron | 30.0% |
| TAGACACTTATCCTTTACTT+AGG | + | chr3_3:10324686-10324705 | Msa0441840:intron | 30.0% | |
| AGACACTTATCCTTTACTTA+GGG | + | chr3_3:10324687-10324706 | Msa0441840:intron | 30.0% | |
| !! | CTAATTTTGCTGTAGTCTTT+TGG | + | chr3_3:10324763-10324782 | Msa0441840:intron | 30.0% |
| !!! | ATTTTTTTAGACGAGAAAGC+TGG | + | chr3_3:10324867-10324886 | Msa0441840:intron | 30.0% |
| TCATTGCTGAGAAATCAAAA+GGG | - | chr3_3:10324989-10325008 | None:intergenic | 30.0% | |
| ! | TGCTATTTGCATTATATGTG+TGG | + | chr3_3:10325046-10325065 | Msa0441840:intron | 30.0% |
| !! | ACATGCATGTTTTTATAAGC+TGG | + | chr3_3:10325148-10325167 | Msa0441840:intron | 30.0% |
| !!! | TTCTGGGAATAGGTTTTATT+AGG | + | chr3_3:10325225-10325244 | Msa0441840:intron | 30.0% |
| !!! | TCTGGGAATAGGTTTTATTA+GGG | + | chr3_3:10325226-10325245 | Msa0441840:intron | 30.0% |
| TAAGTTAGGTGAAGAATTTG+AGG | + | chr3_3:10325475-10325494 | Msa0441840:intron | 30.0% | |
| AAATGAAAAGAGAAAGAGTC+GGG | - | chr3_3:10325526-10325545 | None:intergenic | 30.0% | |
| !! | CTTTTCATTTTTCACTCACT+AGG | + | chr3_3:10325536-10325555 | Msa0441840:intron | 30.0% |
| ! | ACTGCTGATTATCAAAGTTA+GGG | - | chr3_3:10325770-10325789 | None:intergenic | 30.0% |
| ! | TACTGCTGATTATCAAAGTT+AGG | - | chr3_3:10325771-10325790 | None:intergenic | 30.0% |
| ATTGGTAAAACTTTCAAGCA+TGG | - | chr3_3:10325970-10325989 | None:intergenic | 30.0% | |
| !!! | CATATTGACTTTTCGCAATA+TGG | + | chr3_3:10326374-10326393 | Msa0441840:intron | 30.0% |
| ACAAATTTGTAGTTGTGCTT+GGG | + | chr3_3:10326426-10326445 | Msa0441840:intron | 30.0% | |
| GTTTCTGCATGAATTGTTTA+AGG | + | chr3_3:10326568-10326587 | Msa0441840:intron | 30.0% | |
| ! | ATGGAATCATTTTCAAACCA+AGG | - | chr3_3:10326815-10326834 | None:intergenic | 30.0% |
| TTATAGTAATGTAGTCCACT+AGG | + | chr3_3:10326844-10326863 | Msa0441840:intron | 30.0% | |
| AGTTTATTGAAGCAAGTTCT+AGG | + | chr3_3:10326940-10326959 | Msa0441840:intron | 30.0% | |
| GGAATATAAGTCAATTGAGT+AGG | - | chr3_3:10326987-10327006 | None:intergenic | 30.0% | |
| !!! | GCCAGTAAAACACAATTTTT+TGG | + | chr3_3:10327046-10327065 | Msa0441840:intron | 30.0% |
| ! | CCCAAAAAATTGTGTTTTAC+TGG | - | chr3_3:10327050-10327069 | None:intergenic | 30.0% |
| ATTGCTCCTTTCTTTAGTAT+TGG | + | chr3_3:10327197-10327216 | Msa0441840:intron | 30.0% | |
| AGCAAACCAATACTAAAGAA+AGG | - | chr3_3:10327206-10327225 | None:intergenic | 30.0% | |
| ! | TTACATTTTGCTTGTGGTTA+CGG | + | chr3_3:10327407-10327426 | Msa0441840:CDS | 30.0% |
| ! | AGTACTTTCATTTAGAACCA+TGG | + | chr3_3:10327519-10327538 | Msa0441840:intron | 30.0% |
| GAAGAAAATCACAATGCTAT+AGG | - | chr3_3:10327597-10327616 | None:intergenic | 30.0% | |
| TAGAATATTAGATTCTAGCC+TGG | + | chr3_3:10327750-10327769 | Msa0441840:intron | 30.0% | |
| !! | GAATTTTGACGATTCTAGTT+TGG | + | chr3_3:10327869-10327888 | Msa0441840:intron | 30.0% |
| TTCTTCCAAATTCCAATGTA+TGG | + | chr3_3:10327892-10327911 | Msa0441840:intron | 30.0% | |
| AACAAGATGTAGGAAGAAAT+TGG | - | chr3_3:10328136-10328155 | None:intergenic | 30.0% | |
| !! | TTCCATTTTCTTTTTGGTGA+CGG | - | chr3_3:10328348-10328367 | None:intergenic | 30.0% |
| AAAGAAAATGGAAACTTGAG+GGG | + | chr3_3:10328355-10328374 | Msa0441840:three_prime_UTR | 30.0% | |
| TCAACGAAATGAAACCATTA+CGG | - | chr3_3:10328519-10328538 | None:intergenic | 30.0% | |
| !!! | GAGTGTTTTTGGTTTAAGAG+AGG | - | chr3_3:10323872-10323891 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCAGATTC+AGG | + | chr3_3:10323932-10323951 | Msa0441840:five_prime_UTR | 35.0% | |
| TCTCAAAAGGATATTCCTTC+TGG | + | chr3_3:10324129-10324148 | Msa0441840:CDS | 35.0% | |
| !!! | TATTGTCGTCTTGGTTTTGT+TGG | + | chr3_3:10324429-10324448 | Msa0441840:intron | 35.0% |
| GTAATATATGTAACACCGAC+AGG | - | chr3_3:10324559-10324578 | None:intergenic | 35.0% | |
| AAAATCGCATAGGAAGATAC+TGG | - | chr3_3:10324588-10324607 | None:intergenic | 35.0% | |
| GACACTAGTAAAAATCGCAT+AGG | - | chr3_3:10324598-10324617 | None:intergenic | 35.0% | |
| CTCATTGCTGAGAAATCAAA+AGG | - | chr3_3:10324990-10325009 | None:intergenic | 35.0% | |
| ! | TTTGATTTCTCAGCAATGAG+TGG | + | chr3_3:10324990-10325009 | Msa0441840:CDS | 35.0% |
| TGTCATCGTACAATGATTCT+GGG | + | chr3_3:10325209-10325228 | Msa0441840:intron | 35.0% | |
| AGCTTTCCATATCATGATAG+TGG | + | chr3_3:10325338-10325357 | Msa0441840:intron | 35.0% | |
| CTGATTCCACTATCATGATA+TGG | - | chr3_3:10325347-10325366 | None:intergenic | 35.0% | |
| AAATTGGCAGCAACTACAAA+AGG | - | chr3_3:10325370-10325389 | None:intergenic | 35.0% | |
| ! | TTTTGTAGTTGCTGCCAATT+TGG | + | chr3_3:10325369-10325388 | Msa0441840:intron | 35.0% |
| AGATCCATCATTCAATCAGA+TGG | + | chr3_3:10325692-10325711 | Msa0441840:CDS | 35.0% | |
| TCAGCCATGGTCATAAAATT+AGG | - | chr3_3:10325825-10325844 | None:intergenic | 35.0% | |
| ATGTATATGCTGTCTATCAC+AGG | + | chr3_3:10325929-10325948 | Msa0441840:intron | 35.0% | |
| TCAAGCTGAACTTTATTGGA+CGG | - | chr3_3:10325993-10326012 | None:intergenic | 35.0% | |
| CTCTTCAAGCTGAACTTTAT+TGG | - | chr3_3:10325997-10326016 | None:intergenic | 35.0% | |
| TTAGATGAGATAGAGAATGG+CGG | + | chr3_3:10326059-10326078 | Msa0441840:CDS | 35.0% | |
| ATAAACCTCATCATTACAGC+AGG | - | chr3_3:10326086-10326105 | None:intergenic | 35.0% | |
| ATCTAGATACTGGAATGATG+AGG | + | chr3_3:10326205-10326224 | Msa0441840:intron | 35.0% | |
| ! | CTGCTTCTTCTGAAAATTCT+GGG | + | chr3_3:10326285-10326304 | Msa0441840:CDS | 35.0% |
| GATTCATCTTCTGTTTCATC+TGG | - | chr3_3:10326311-10326330 | None:intergenic | 35.0% | |
| GACAAATTTGTAGTTGTGCT+TGG | + | chr3_3:10326425-10326444 | Msa0441840:intron | 35.0% | |
| TGAACTAAACCTAACCACAT+CGG | - | chr3_3:10326478-10326497 | None:intergenic | 35.0% | |
| GTAATTAATTGTCTCGCAGT+TGG | + | chr3_3:10326533-10326552 | Msa0441840:intron | 35.0% | |
| TTCTATTCCAAACAACTCCT+TGG | + | chr3_3:10326795-10326814 | Msa0441840:intron | 35.0% | |
| TTTCAAACCAAGGAGTTGTT+TGG | - | chr3_3:10326805-10326824 | None:intergenic | 35.0% | |
| !!! | GCGGGTGTTTTATTTCTTTA+AGG | - | chr3_3:10326876-10326895 | None:intergenic | 35.0% |
| ACTTCCCTGAGTAACTTATA+AGG | + | chr3_3:10327011-10327030 | Msa0441840:intron | 35.0% | |
| TCCTCCTTATAAGTTACTCA+GGG | - | chr3_3:10327018-10327037 | None:intergenic | 35.0% | |
| ATCCTCCTTATAAGTTACTC+AGG | - | chr3_3:10327019-10327038 | None:intergenic | 35.0% | |
| TAAGGATGAAGAAGATTCAG+AGG | + | chr3_3:10327373-10327392 | Msa0441840:CDS | 35.0% | |
| AAGGATGAAGAAGATTCAGA+GGG | + | chr3_3:10327374-10327393 | Msa0441840:CDS | 35.0% | |
| ! | ACTGCTTTACATTTTGCTTG+TGG | + | chr3_3:10327401-10327420 | Msa0441840:CDS | 35.0% |
| ! | GCCTGGTTCTTGTATATATA+TGG | + | chr3_3:10327767-10327786 | Msa0441840:intron | 35.0% |
| GCCATATATATACAAGAACC+AGG | - | chr3_3:10327771-10327790 | None:intergenic | 35.0% | |
| ATATGCTCCTGATATATTCC+AGG | + | chr3_3:10327921-10327940 | Msa0441840:intron | 35.0% | |
| ATACCACTACAACAAGATGT+AGG | - | chr3_3:10328146-10328165 | None:intergenic | 35.0% | |
| ! | CATCTTGTTGTAGTGGTATT+TGG | + | chr3_3:10328147-10328166 | Msa0441840:intron | 35.0% |
| TTGCAGTACTCTGCAAAATA+TGG | + | chr3_3:10328211-10328230 | Msa0441840:intron | 35.0% | |
| AGTACTCTGCAAAATATGGA+TGG | + | chr3_3:10328215-10328234 | Msa0441840:intron | 35.0% | |
| GTACTCTGCAAAATATGGAT+GGG | + | chr3_3:10328216-10328235 | Msa0441840:intron | 35.0% | |
| AAACATCTTTCTCAAGAAGC+TGG | - | chr3_3:10328289-10328308 | None:intergenic | 35.0% | |
| ! | GATGTTTTCCTGTAATTGCA+AGG | + | chr3_3:10328302-10328321 | Msa0441840:exon | 35.0% |
| ! | GTTGTCGCAAAATTCTCTTT+TGG | + | chr3_3:10328562-10328581 | Msa0441840:three_prime_UTR | 35.0% |
| ATAATGAGATCCAGATCTGT+TGG | + | chr3_3:10328604-10328623 | Msa0441840:three_prime_UTR | 35.0% | |
| TAATGAGATCCAGATCTGTT+GGG | + | chr3_3:10328605-10328624 | Msa0441840:three_prime_UTR | 35.0% | |
| ! | GACTTTTCCAACTCTCACAA+GGG | + | chr3_3:10323813-10323832 | Msa0441840:five_prime_UTR | 40.0% |
| TGAAAAACCCTTGTGAGAGT+TGG | - | chr3_3:10323823-10323842 | None:intergenic | 40.0% | |
| !!! | AGAGTGTGAGAGAGTGTTTT+TGG | - | chr3_3:10323883-10323902 | None:intergenic | 40.0% |
| GAAGAAGAAGAAGAGCGATA+AGG | - | chr3_3:10323914-10323933 | None:intergenic | 40.0% | |
| TATCTAGGTTTCTTCGCTCA+TGG | + | chr3_3:10324098-10324117 | Msa0441840:intron | 40.0% | |
| CATGGCTTCCAATTCTCAAA+AGG | + | chr3_3:10324116-10324135 | Msa0441840:exon | 40.0% | |
| TGCTGAGAAATCAAAAGGGT+TGG | - | chr3_3:10324985-10325004 | None:intergenic | 40.0% | |
| TTTATAAGCTGGTCATGCGT+TGG | + | chr3_3:10325159-10325178 | Msa0441840:intron | 40.0% | |
| ACAGGCTGCAAAATTGCAAA+TGG | - | chr3_3:10325192-10325211 | None:intergenic | 40.0% | |
| CAGAATCATTGTACGATGAC+AGG | - | chr3_3:10325210-10325229 | None:intergenic | 40.0% | |
| CTGTCATCGTACAATGATTC+TGG | + | chr3_3:10325208-10325227 | Msa0441840:intron | 40.0% | |
| ! | CGTACAATGATTCTGGGAAT+AGG | + | chr3_3:10325215-10325234 | Msa0441840:intron | 40.0% |
| !! | TAAAGAACGCTTTTTGCCGA+CGG | - | chr3_3:10325286-10325305 | None:intergenic | 40.0% |
| ! | GGACTTTTGAACTCATCGTA+TGG | + | chr3_3:10325496-10325515 | Msa0441840:intron | 40.0% |
| GGATCCAAGTATCAAGGAAT+TGG | + | chr3_3:10325653-10325672 | Msa0441840:intron | 40.0% | |
| TCAGCCAATTCCTTGATACT+TGG | - | chr3_3:10325660-10325679 | None:intergenic | 40.0% | |
| TCAGCCATCTGATTGAATGA+TGG | - | chr3_3:10325699-10325718 | None:intergenic | 40.0% | |
| CAGCTTCAGAAAACTTTGCA+TGG | + | chr3_3:10325720-10325739 | Msa0441840:CDS | 40.0% | |
| CTTCAGAAAACTTTGCATGG+AGG | + | chr3_3:10325723-10325742 | Msa0441840:CDS | 40.0% | |
| GTATCTTTCATCCATGCAAC+AGG | + | chr3_3:10325788-10325807 | Msa0441840:CDS | 40.0% | |
| CTGAACTTTATTGGACGGAT+TGG | - | chr3_3:10325988-10326007 | None:intergenic | 40.0% | |
| AGTTCAGCTTGAAGAGAGAA+TGG | + | chr3_3:10326001-10326020 | Msa0441840:CDS | 40.0% | |
| TAGATACTGGAATGATGAGG+AGG | + | chr3_3:10326208-10326227 | Msa0441840:intron | 40.0% | |
| !!! | TGAGGAGGTTTTGAAGAAGT+TGG | + | chr3_3:10326223-10326242 | Msa0441840:CDS | 40.0% |
| !!! | GAGGAGGTTTTGAAGAAGTT+GGG | + | chr3_3:10326224-10326243 | Msa0441840:CDS | 40.0% |
| ! | GCTGCTTCTTCTGAAAATTC+TGG | + | chr3_3:10326284-10326303 | Msa0441840:CDS | 40.0% |
| GTTCATCATACTGCTAGTGT+TGG | + | chr3_3:10326335-10326354 | Msa0441840:CDS | 40.0% | |
| !! | AGCTTTTGGGAGCTTCATAT+TGG | + | chr3_3:10326653-10326672 | Msa0441840:intron | 40.0% |
| !! | GCTTTTGGGAGCTTCATATT+GGG | + | chr3_3:10326654-10326673 | Msa0441840:intron | 40.0% |
| AGTAATGTAGTCCACTAGGT+TGG | + | chr3_3:10326848-10326867 | Msa0441840:intron | 40.0% | |
| !! | TCTTTAAGGTACCAACCTAG+TGG | - | chr3_3:10326862-10326881 | None:intergenic | 40.0% |
| GCAAAAAAAACTTCTGCAGC+GGG | - | chr3_3:10326894-10326913 | None:intergenic | 40.0% | |
| GGCAAAAAAAACTTCTGCAG+CGG | - | chr3_3:10326895-10326914 | None:intergenic | 40.0% | |
| TCCCTGAGTAACTTATAAGG+AGG | + | chr3_3:10327014-10327033 | Msa0441840:intron | 40.0% | |
| TTGTGTATGCCCTTGTGTAA+AGG | + | chr3_3:10327116-10327135 | Msa0441840:intron | 40.0% | |
| AGCATGCAACCTTTACACAA+GGG | - | chr3_3:10327128-10327147 | None:intergenic | 40.0% | |
| AAGCATGCAACCTTTACACA+AGG | - | chr3_3:10327129-10327148 | None:intergenic | 40.0% | |
| TCTTCACTTGCTTTACACCA+TGG | - | chr3_3:10327539-10327558 | None:intergenic | 40.0% | |
| AGCAAGTGAAGAATGTAACG+AGG | + | chr3_3:10327547-10327566 | Msa0441840:intron | 40.0% | |
| CGGACAGTATTCATAATGCT+TGG | + | chr3_3:10327631-10327650 | Msa0441840:intron | 40.0% | |
| CAGTAGTGTCATCATTGAGT+CGG | - | chr3_3:10327701-10327720 | None:intergenic | 40.0% | |
| GACTCAATGATGACACTACT+GGG | + | chr3_3:10327700-10327719 | Msa0441840:intron | 40.0% | |
| ACAATGCTGCTATGCTCATT+TGG | + | chr3_3:10327724-10327743 | Msa0441840:intron | 40.0% | |
| CACTTCACCTGGAATATATC+AGG | - | chr3_3:10327931-10327950 | None:intergenic | 40.0% | |
| TGGAGCAAAAGTAGATGCTT+TGG | + | chr3_3:10327972-10327991 | Msa0441840:CDS | 40.0% | |
| CTTCATTATGCAGCAGGTTA+TGG | + | chr3_3:10328015-10328034 | Msa0441840:CDS | 40.0% | |
| GAAATTGGCATGAACAGTTG+AGG | - | chr3_3:10328121-10328140 | None:intergenic | 40.0% | |
| ! | CTTCCTACATCTTGTTGTAG+TGG | + | chr3_3:10328140-10328159 | Msa0441840:intron | 40.0% |
| TAATTGCAAGGCATGCATGA+TGG | + | chr3_3:10328314-10328333 | Msa0441840:exon | 40.0% | |
| TGCCGTCACCAAAAAGAAAA+TGG | + | chr3_3:10328343-10328362 | Msa0441840:three_prime_UTR | 40.0% | |
| TATCAAGATTAGCGCCGTAA+TGG | + | chr3_3:10328502-10328521 | Msa0441840:three_prime_UTR | 40.0% | |
| ! | GGACTTTTCCAACTCTCACA+AGG | + | chr3_3:10323812-10323831 | Msa0441840:five_prime_UTR | 45.0% |
| !! | CACAGGTGTTATTGTCGTCT+TGG | + | chr3_3:10324420-10324439 | Msa0441840:intron | 45.0% |
| !!! | CGTCTTGGTTTTGTTGGTGT+TGG | + | chr3_3:10324435-10324454 | Msa0441840:intron | 45.0% |
| GTGCAGTACACCCTAAGTAA+AGG | - | chr3_3:10324700-10324719 | None:intergenic | 45.0% | |
| ! | GAGAAATCAAAAGGGTTGGC+TGG | - | chr3_3:10324981-10325000 | None:intergenic | 45.0% |
| !! | AAAGAACGCTTTTTGCCGAC+GGG | - | chr3_3:10325285-10325304 | None:intergenic | 45.0% |
| GTCACAGGATCCAAGTATCA+AGG | + | chr3_3:10325647-10325666 | Msa0441840:intron | 45.0% | |
| TTCATCCATGCAACAGGTCA+TGG | + | chr3_3:10325794-10325813 | Msa0441840:CDS | 45.0% | |
| ATTTGCCATGACCTGTTGCA+TGG | - | chr3_3:10325802-10325821 | None:intergenic | 45.0% | |
| CAAGCATGGAAGACATCGAT+GGG | - | chr3_3:10325956-10325975 | None:intergenic | 45.0% | |
| TCAAGCATGGAAGACATCGA+TGG | - | chr3_3:10325957-10325976 | None:intergenic | 45.0% | |
| AGAGAGAATGGCACGCATAA+AGG | + | chr3_3:10326013-10326032 | Msa0441840:CDS | 45.0% | |
| !! | AAGAAGTTGGGACTAGCCAT+GGG | + | chr3_3:10326236-10326255 | Msa0441840:CDS | 45.0% |
| !! | TGCTAGTGTTGGTGACATTG+AGG | + | chr3_3:10326346-10326365 | Msa0441840:CDS | 45.0% |
| !! | TTGAATAGAAGGTGCCGATG+TGG | + | chr3_3:10326461-10326480 | Msa0441840:intron | 45.0% |
| AAGTTACTCAGGGAAGTCTG+TGG | - | chr3_3:10327008-10327027 | None:intergenic | 45.0% | |
| ! | CAATGGTGGAACTTCACAAC+AGG | - | chr3_3:10327254-10327273 | None:intergenic | 45.0% |
| TTCATCCTTATCAGCACCAG+AGG | - | chr3_3:10327363-10327382 | None:intergenic | 45.0% | |
| GTGAAGAATGTAACGAGGCT+CGG | + | chr3_3:10327552-10327571 | Msa0441840:intron | 45.0% | |
| TGAAGAATGTAACGAGGCTC+GGG | + | chr3_3:10327553-10327572 | Msa0441840:intron | 45.0% | |
| TTCTTCCACCACAGTGAACT+CGG | + | chr3_3:10327611-10327630 | Msa0441840:intron | 45.0% | |
| AATACTGTCCGAGTTCACTG+TGG | - | chr3_3:10327622-10327641 | None:intergenic | 45.0% | |
| CGACTCAATGATGACACTAC+TGG | + | chr3_3:10327699-10327718 | Msa0441840:intron | 45.0% | |
| TCTAACAAGCCCTCTCTAGA+AGG | - | chr3_3:10327825-10327844 | None:intergenic | 45.0% | |
| ACAGCTCTTCATTATGCAGC+AGG | + | chr3_3:10328009-10328028 | Msa0441840:CDS | 45.0% | |
| ATTATGCAGCAGGTTATGGC+AGG | + | chr3_3:10328019-10328038 | Msa0441840:CDS | 45.0% | |
| TTATGGCAGGAAGGAATGTG+TGG | + | chr3_3:10328032-10328051 | Msa0441840:CDS | 45.0% | |
| CATCTTTCTCAAGAAGCTGG+AGG | - | chr3_3:10328286-10328305 | None:intergenic | 45.0% | |
| CATGCATGCCTTGCAATTAC+AGG | - | chr3_3:10328313-10328332 | None:intergenic | 45.0% | |
| ATATGTAACACCGACAGGCG+TGG | - | chr3_3:10324554-10324573 | None:intergenic | 50.0% | |
| ! | AGACGAGAAAGCTGGTTCAG+CGG | + | chr3_3:10324875-10324894 | Msa0441840:intron | 50.0% |
| AGCTGGTCATGCGTTGGATT+TGG | + | chr3_3:10325165-10325184 | Msa0441840:intron | 50.0% | |
| CCTGCATCAATGCATTACCC+AGG | - | chr3_3:10325851-10325870 | None:intergenic | 50.0% | |
| ! | CCTGGGTAATGCATTGATGC+AGG | + | chr3_3:10325848-10325867 | Msa0441840:CDS | 50.0% |
| !! | GAAGAAGTTGGGACTAGCCA+TGG | + | chr3_3:10326235-10326254 | Msa0441840:CDS | 50.0% |
| !! | TAGAAGGTGCCGATGTGGTT+AGG | + | chr3_3:10326466-10326485 | Msa0441840:intron | 50.0% |
| ! | TTTTGCTTGTGGTTACGGCG+AGG | + | chr3_3:10327412-10327431 | Msa0441840:CDS | 50.0% |
| AGAAGGAGGAGAGGGCTAAA+TGG | - | chr3_3:10327808-10327827 | None:intergenic | 50.0% | |
| ! | AACAAGCCCTCTCTAGAAGG+AGG | - | chr3_3:10327822-10327841 | None:intergenic | 50.0% |
| !! | CTACTTTTGCTCCAGCCTCA+AGG | - | chr3_3:10327966-10327985 | None:intergenic | 50.0% |
| ! | GTGGCCTTGCTCCTTGAAAA+CGG | + | chr3_3:10328051-10328070 | Msa0441840:CDS | 50.0% |
| !! | AGCACCGTTTTCAAGGAGCA+AGG | - | chr3_3:10328058-10328077 | None:intergenic | 50.0% |
| ! | ACACTGCAGCACCGTTTTCA+AGG | - | chr3_3:10328065-10328084 | None:intergenic | 50.0% |
| ATGTTGGACACCACGCCTGT+CGG | + | chr3_3:10324541-10324560 | Msa0441840:intron | 55.0% | |
| ACATCCTCGAACGCAACTCC+CGG | + | chr3_3:10324921-10324940 | Msa0441840:CDS | 55.0% | |
| ACCAGTCCCAGGTGGAAAAC+CGG | - | chr3_3:10324955-10324974 | None:intergenic | 55.0% | |
| TTGGCTGGAAAACCAGTCCC+AGG | - | chr3_3:10324966-10324985 | None:intergenic | 55.0% | |
| TCAGAGGTCTTCACACCCGT+CGG | + | chr3_3:10325267-10325286 | Msa0441840:intron | 55.0% | |
| !! | TTTGCATGGAGGAGCACCAC+AGG | + | chr3_3:10325734-10325753 | Msa0441840:CDS | 55.0% |
| TTAGGGAGACCACCATCCTG+TGG | - | chr3_3:10325753-10325772 | None:intergenic | 55.0% | |
| GCGGTCCTGCTGTAATGATG+AGG | + | chr3_3:10326078-10326097 | Msa0441840:CDS | 55.0% | |
| AGAGGTTGGAGGAATGCCCA+TGG | - | chr3_3:10326255-10326274 | None:intergenic | 55.0% | |
| ATGGGCATTCCTCCAACCTC+TGG | + | chr3_3:10326254-10326273 | Msa0441840:CDS | 55.0% | |
| AGAAGCAGCTGCATCTCCAG+AGG | - | chr3_3:10326273-10326292 | None:intergenic | 55.0% | |
| ! | TTGAAAGCTGCGCTAGCCTC+TGG | + | chr3_3:10327344-10327363 | Msa0441840:CDS | 55.0% |
| !! | GCTAGCCTCTGGTGCTGATA+AGG | + | chr3_3:10327355-10327374 | Msa0441840:CDS | 55.0% |
| ACTGTCCGAGTTCACTGTGG+TGG | - | chr3_3:10327619-10327638 | None:intergenic | 55.0% | |
| ! | CCCTCTCTAGAAGGAGGAGA+GGG | - | chr3_3:10327816-10327835 | None:intergenic | 55.0% |
| ! | CCCTCTCCTCCTTCTAGAGA+GGG | + | chr3_3:10327813-10327832 | Msa0441840:intron | 55.0% |
| TGCAGCAGGTTATGGCAGGA+AGG | + | chr3_3:10328023-10328042 | Msa0441840:CDS | 55.0% | |
| TGGAAAACCGGTCCCAGGTC+CGG | - | chr3_3:10324943-10324962 | None:intergenic | 60.0% | |
| !! | CTGGGACCGGTTTTCCACCT+GGG | + | chr3_3:10324946-10324965 | Msa0441840:CDS | 60.0% |
| !! | ACCGGTTTTCCACCTGGGAC+TGG | + | chr3_3:10324951-10324970 | Msa0441840:CDS | 60.0% |
| GCTGGAAAACCAGTCCCAGG+TGG | - | chr3_3:10324963-10324982 | None:intergenic | 60.0% | |
| !! | CATGGAGGAGCACCACAGGA+TGG | + | chr3_3:10325738-10325757 | Msa0441840:CDS | 60.0% |
| TATGACCATGGCTGAGCGCC+TGG | + | chr3_3:10325830-10325849 | Msa0441840:CDS | 60.0% | |
| ATGACCATGGCTGAGCGCCT+GGG | + | chr3_3:10325831-10325850 | Msa0441840:CDS | 60.0% | |
| ATTACCCAGGCGCTCAGCCA+TGG | - | chr3_3:10325838-10325857 | None:intergenic | 60.0% | |
| GCTGCATCTCCAGAGGTTGG+AGG | - | chr3_3:10326266-10326285 | None:intergenic | 60.0% | |
| GCAGCTGCATCTCCAGAGGT+TGG | - | chr3_3:10326269-10326288 | None:intergenic | 60.0% | |
| ! | GCCCTCTCCTCCTTCTAGAG+AGG | + | chr3_3:10327812-10327831 | Msa0441840:intron | 60.0% |
| ! | GCCCTCTCTAGAAGGAGGAG+AGG | - | chr3_3:10327817-10327836 | None:intergenic | 60.0% |
| GAGCTTGCGCACACTTCACC+TGG | - | chr3_3:10327942-10327961 | None:intergenic | 60.0% | |
| GTGTGCGCAAGCTCTCCTTG+AGG | + | chr3_3:10327948-10327967 | Msa0441840:CDS | 60.0% | |
| AGGTCCGGGAGTTGCGTTCG+AGG | - | chr3_3:10324928-10324947 | None:intergenic | 65.0% | |
| TCGAACGCAACTCCCGGACC+TGG | + | chr3_3:10324927-10324946 | Msa0441840:CDS | 65.0% | |
| CGAACGCAACTCCCGGACCT+GGG | + | chr3_3:10324928-10324947 | Msa0441840:CDS | 65.0% | |
| GGAAAACCGGTCCCAGGTCC+GGG | - | chr3_3:10324942-10324961 | None:intergenic | 65.0% | |
| CCAGGTGGAAAACCGGTCCC+AGG | - | chr3_3:10324948-10324967 | None:intergenic | 65.0% | |
| !! | CCTGGGACCGGTTTTCCACC+TGG | + | chr3_3:10324945-10324964 | Msa0441840:CDS | 65.0% |
| !! | GGAGGAGCACCACAGGATGG+TGG | + | chr3_3:10325741-10325760 | Msa0441840:CDS | 65.0% |
| GCGCAAGCTCTCCTTGAGGC+TGG | + | chr3_3:10327952-10327971 | Msa0441840:CDS | 65.0% | |
| GCAACTCCCGGACCTGGGAC+CGG | + | chr3_3:10324933-10324952 | Msa0441840:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 10323811 | 10328633 | 10323811 | ID=Msa0441840;Name=Msa0441840 |
| chr3_3 | mRNA | 10323811 | 10328633 | 10323811 | ID=Msa0441840-mRNA-1;Parent=Msa0441840;Name=Msa0441840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=155|0.87|0.88|1|0.87|0.88|9|317|344 |
| chr3_3 | exon | 10323811 | 10323953 | 10323811 | ID=Msa0441840-mRNA-1:exon:2234;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10324105 | 10324150 | 10324105 | ID=Msa0441840-mRNA-1:exon:2235;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10324877 | 10325022 | 10324877 | ID=Msa0441840-mRNA-1:exon:2236;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10325654 | 10325869 | 10325654 | ID=Msa0441840-mRNA-1:exon:2237;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10325951 | 10326099 | 10325951 | ID=Msa0441840-mRNA-1:exon:2238;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10326211 | 10326367 | 10326211 | ID=Msa0441840-mRNA-1:exon:2239;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10327341 | 10327433 | 10327341 | ID=Msa0441840-mRNA-1:exon:2240;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10327943 | 10328082 | 10327943 | ID=Msa0441840-mRNA-1:exon:2241;Parent=Msa0441840-mRNA-1 |
| chr3_3 | exon | 10328217 | 10328633 | 10328217 | ID=Msa0441840-mRNA-1:exon:2242;Parent=Msa0441840-mRNA-1 |
| chr3_3 | five_prime_UTR | 10323811 | 10323953 | 10323811 | ID=Msa0441840-mRNA-1:five_prime_utr;Parent=Msa0441840-mRNA-1 |
| chr3_3 | five_prime_UTR | 10324105 | 10324116 | 10324105 | ID=Msa0441840-mRNA-1:five_prime_utr;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10324117 | 10324150 | 10324117 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10324877 | 10325022 | 10324877 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10325654 | 10325869 | 10325654 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10325951 | 10326099 | 10325951 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10326211 | 10326367 | 10326211 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10327341 | 10327433 | 10327341 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10327943 | 10328082 | 10327943 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | CDS | 10328217 | 10328316 | 10328217 | ID=Msa0441840-mRNA-1:cds;Parent=Msa0441840-mRNA-1 |
| chr3_3 | three_prime_UTR | 10328317 | 10328633 | 10328317 | ID=Msa0441840-mRNA-1:three_prime_utr;Parent=Msa0441840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
