Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347400 | XP_013458822.1 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347400 | sp|Q29Q26|AKR2B_ARATH | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.19e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347400 | A0A072USU9 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0065390 | Msa0347400 | 0.817132 | 3.863248e-52 | -8.615850e-47 |
| Msa0110710 | Msa0347400 | 0.819915 | 9.036324e-53 | -8.615850e-47 |
| Msa0157020 | Msa0347400 | 0.807251 | 5.537556e-50 | -8.615850e-47 |
| Msa0284260 | Msa0347400 | 0.801253 | 9.823420e-49 | -8.615850e-47 |
| Msa0347400 | Msa0394010 | 0.936377 | 1.913428e-97 | -8.615850e-47 |
| Msa0347400 | Msa0441840 | 0.811774 | 5.916592e-51 | -8.615850e-47 |
| Msa0347400 | Msa0463810 | 0.824229 | 9.038812e-54 | -8.615850e-47 |
| Msa0347400 | Msa0489460 | 0.880661 | 4.565837e-70 | -8.615850e-47 |
| Msa0347400 | Msa0521780 | -0.821090 | 4.856097e-53 | -8.615850e-47 |
| Msa0347400 | Msa0690500 | 0.816291 | 5.966367e-52 | -8.615850e-47 |
| Msa0347400 | Msa0706530 | 0.809215 | 2.112521e-50 | -8.615850e-47 |
| Msa0347400 | Msa0717510 | 0.815376 | 9.544139e-52 | -8.615850e-47 |
| Msa0347400 | Msa0734430 | 0.813458 | 2.534202e-51 | -8.615850e-47 |
| Msa0347400 | Msa0930160 | 0.804326 | 2.279713e-49 | -8.615850e-47 |
| Msa0347400 | Msa1157680 | 0.801216 | 9.995585e-49 | -8.615850e-47 |
| Msa0347400 | Msa1215210 | 0.802180 | 6.341193e-49 | -8.615850e-47 |
| Msa0347400 | Msa1215530 | 0.812289 | 4.568736e-51 | -8.615850e-47 |
| Msa0347400 | Msa1219250 | 0.806570 | 7.714977e-50 | -8.615850e-47 |
| Msa0347400 | Msa1238410 | 0.801960 | 7.035651e-49 | -8.615850e-47 |
| Msa0347400 | Msa1404790 | 0.804537 | 2.059578e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347400 | MtrunA17_Chr3g0079591 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Msa0347400 | MtrunA17_Chr3g0142201 | 57.676 | 241 | 93 | 5 | 1 | 239 | 1 | 234 | 3.36e-85 | 263 |
| Msa0347400 | MtrunA17_Chr1g0176011 | 57.955 | 176 | 56 | 4 | 50 | 225 | 18 | 175 | 5.59e-54 | 182 |
| Msa0347400 | MtrunA17_Chr6g0463271 | 44.856 | 243 | 102 | 6 | 1 | 239 | 1 | 215 | 6.61e-52 | 176 |
| Msa0347400 | MtrunA17_Chr1g0175931 | 56.818 | 176 | 58 | 4 | 50 | 225 | 18 | 175 | 3.68e-51 | 174 |
| Msa0347400 | MtrunA17_Chr1g0175951 | 59.211 | 152 | 60 | 2 | 74 | 225 | 2 | 151 | 8.83e-50 | 170 |
| Msa0347400 | MtrunA17_Chr3g0142931 | 47.980 | 198 | 75 | 5 | 42 | 239 | 39 | 208 | 1.13e-48 | 167 |
| Msa0347400 | MtrunA17_Chr3g0144061 | 60.577 | 104 | 35 | 1 | 136 | 239 | 1 | 98 | 3.55e-35 | 124 |
| Msa0347400 | MtrunA17_Chr1g0175991 | 51.079 | 139 | 48 | 5 | 50 | 188 | 34 | 152 | 1.04e-29 | 115 |
| Msa0347400 | MtrunA17_Chr4g0065471 | 42.478 | 113 | 43 | 3 | 178 | 284 | 26 | 122 | 4.52e-15 | 74.3 |
| Msa0347400 | MtrunA17_Chr5g0418551 | 36.879 | 141 | 82 | 1 | 203 | 343 | 75 | 208 | 1.89e-14 | 72.4 |
| Msa0347400 | MtrunA17_Chr1g0187681 | 33.588 | 131 | 84 | 2 | 222 | 349 | 4 | 134 | 2.76e-13 | 70.5 |
| Msa0347400 | MtrunA17_Chr6g0461061 | 37.000 | 100 | 62 | 1 | 245 | 343 | 230 | 329 | 3.26e-12 | 67.4 |
| Msa0347400 | MtrunA17_Chr1g0180301 | 37.705 | 122 | 66 | 4 | 231 | 343 | 43 | 163 | 3.39e-12 | 65.1 |
| Msa0347400 | MtrunA17_Chr4g0038681 | 39.316 | 117 | 68 | 2 | 219 | 332 | 116 | 232 | 2.12e-11 | 64.7 |
| Msa0347400 | MtrunA17_Chr1g0196261 | 37.113 | 97 | 60 | 1 | 233 | 328 | 348 | 444 | 5.40e-11 | 63.5 |
| Msa0347400 | MtrunA17_Chr3g0082141 | 30.128 | 156 | 86 | 3 | 180 | 331 | 665 | 801 | 8.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0347400 | AT2G17390.1 | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.26e-153 | 434 |
| Msa0347400 | AT4G35450.2 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0347400 | AT4G35450.3 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0347400 | AT4G35450.1 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0347400 | AT4G35450.5 | 63.510 | 359 | 112 | 7 | 1 | 349 | 1 | 350 | 2.96e-146 | 417 |
| Msa0347400 | AT4G35450.4 | 67.961 | 309 | 93 | 3 | 41 | 349 | 2 | 304 | 8.30e-146 | 414 |
| Msa0347400 | AT2G03430.1 | 39.000 | 100 | 61 | 0 | 229 | 328 | 87 | 186 | 3.54e-14 | 71.6 |
| Msa0347400 | AT3G23280.1 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.10e-13 | 72.4 |
| Msa0347400 | AT3G23280.2 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.20e-13 | 72.0 |
| Msa0347400 | AT5G53470.1 | 34.615 | 104 | 68 | 0 | 229 | 332 | 222 | 325 | 2.79e-13 | 70.5 |
| Msa0347400 | AT5G12320.1 | 35.354 | 99 | 64 | 0 | 233 | 331 | 19 | 117 | 5.31e-12 | 63.5 |
| Msa0347400 | AT4G27780.1 | 33.654 | 104 | 69 | 0 | 229 | 332 | 237 | 340 | 8.63e-12 | 65.9 |
| Msa0347400 | AT2G47450.1 | 40.351 | 114 | 66 | 2 | 220 | 332 | 123 | 235 | 1.67e-11 | 65.1 |
Find 101 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGCTGAACTTTAT+TGG | 0.122980 | 3_1:-8409572 | None:intergenic |
| TCTTCTTCTTCTTCAGATTC+AGG | 0.165026 | 3_1:+8407511 | Msa0347400:five_prime_UTR |
| GCTGCTTCTTCTGAAAATTC+TGG | 0.165755 | 3_1:+8409862 | Msa0347400:CDS |
| TTGCAGTACTCTGCAAAATA+TGG | 0.286124 | 3_1:+8411804 | Msa0347400:intron |
| CCCACATCTTCTGTTTCATC+TGG | 0.296289 | 3_1:-8409886 | None:intergenic |
| TTTAATTTCGCAACATCTAT+AGG | 0.306488 | 3_1:-8411838 | None:intergenic |
| TCAGCCATGGTCATAAAATT+AGG | 0.317600 | 3_1:-8409400 | None:intergenic |
| CATGCATGCCTTGCAATTAC+AGG | 0.322895 | 3_1:-8411903 | None:intergenic |
| CTTCATTATGCAGCAGGTTA+TGG | 0.341988 | 3_1:+8411607 | Msa0347400:CDS |
| TCTCAAAAGGATATTCCTTC+TGG | 0.350480 | 3_1:+8407709 | Msa0347400:CDS |
| GTTGTCGCAAAATTCTCTTT+TGG | 0.359269 | 3_1:+8412155 | Msa0347400:three_prime_UTR |
| TATGACCATGGCTGAGCGCC+TGG | 0.371236 | 3_1:+8409408 | Msa0347400:CDS |
| TGGAAAACCGGTCCCAGGTC+CGG | 0.375249 | 3_1:-8408518 | None:intergenic |
| AGAGAGAATGGCACGCATAA+AGG | 0.386835 | 3_1:+8409591 | Msa0347400:CDS |
| CTCATTGCTGAGAAATCAAA+AGG | 0.392741 | 3_1:-8408565 | None:intergenic |
| CTGCTTCTTCTGAAAATTCT+GGG | 0.395319 | 3_1:+8409863 | Msa0347400:CDS |
| TCAGCCAATTCCTTGATACT+TGG | 0.405646 | 3_1:-8409235 | None:intergenic |
| GGATCCAAGTATCAAGGAAT+TGG | 0.418761 | 3_1:+8409231 | Msa0347400:intron |
| TACTGCTGATTATCAAAGTT+AGG | 0.425274 | 3_1:-8409346 | None:intergenic |
| CTGAACTTTATTGGACGGAT+TGG | 0.428989 | 3_1:-8409563 | None:intergenic |
| ACCAGTCCCAGGTGGAAAAC+CGG | 0.440893 | 3_1:-8408530 | None:intergenic |
| TTGAAAGCTGCGCTAGCCTC+TGG | 0.443610 | 3_1:+8410936 | Msa0347400:CDS |
| AGGTCCGGGAGTTGCGTTCG+AGG | 0.459739 | 3_1:-8408503 | None:intergenic |
| GCGCAAGCTCTCCTTGAGGC+TGG | 0.462394 | 3_1:+8411544 | Msa0347400:CDS |
| GGAAAACCGGTCCCAGGTCC+GGG | 0.463114 | 3_1:-8408517 | None:intergenic |
| TCGAACGCAACTCCCGGACC+TGG | 0.465039 | 3_1:+8408505 | Msa0347400:CDS |
| ATGGGCATTCCTCCAACCTC+TGG | 0.465285 | 3_1:+8409832 | Msa0347400:CDS |
| TCTAAAATATGTTTCAAAGA+TGG | 0.467672 | 3_1:-8409619 | None:intergenic |
| TGGAGCAAAAGTAGATGCTT+TGG | 0.468103 | 3_1:+8411564 | Msa0347400:CDS |
| TATCTAGGTTTCTTCGCTCA+TGG | 0.468456 | 3_1:+8407678 | Msa0347400:intron |
| GAAGAAGTTGGGACTAGCCA+TGG | 0.471435 | 3_1:+8409813 | Msa0347400:CDS |
| GAAGAAGAAGAAGAGCGATA+AGG | 0.472336 | 3_1:-8407493 | None:intergenic |
| GTATCTTTCATCCATGCAAC+AGG | 0.477789 | 3_1:+8409366 | Msa0347400:CDS |
| AAAAGAAAATGGAAACTTGA+GGG | 0.478831 | 3_1:+8411947 | Msa0347400:three_prime_UTR |
| GAGAAATCAAAAGGGTTGGC+TGG | 0.479871 | 3_1:-8408556 | None:intergenic |
| TATCAAGATTAGCGCCGTAA+TGG | 0.480898 | 3_1:+8412095 | Msa0347400:three_prime_UTR |
| CATGGCTTCCAATTCTCAAA+AGG | 0.488909 | 3_1:+8407696 | Msa0347400:exon |
| AAACATCTTTCTCAAGAAGC+TGG | 0.492614 | 3_1:-8411879 | None:intergenic |
| GCTAGCCTCTGGTGCTGATA+AGG | 0.495452 | 3_1:+8410947 | Msa0347400:CDS |
| TAATGAGATCCAGATCTGTT+GGG | 0.509322 | 3_1:+8412198 | Msa0347400:three_prime_UTR |
| ACAGCTCTTCATTATGCAGC+AGG | 0.511661 | 3_1:+8411601 | Msa0347400:CDS |
| TCAACGAAATGAAACCATTA+CGG | 0.513851 | 3_1:-8412109 | None:intergenic |
| ACTGCTGATTATCAAAGTTA+GGG | 0.515114 | 3_1:-8409345 | None:intergenic |
| AGTTCAGCTTGAAGAGAGAA+TGG | 0.515247 | 3_1:+8409579 | Msa0347400:CDS |
| ATAATGAGATCCAGATCTGT+TGG | 0.519485 | 3_1:+8412197 | Msa0347400:three_prime_UTR |
| ATTATGCAGCAGGTTATGGC+AGG | 0.522371 | 3_1:+8411611 | Msa0347400:CDS |
| TTCATCCATGCAACAGGTCA+TGG | 0.523490 | 3_1:+8409372 | Msa0347400:CDS |
| GCAGCTGCATCTCCAGAGGT+TGG | 0.525843 | 3_1:-8409844 | None:intergenic |
| GCAACTCCCGGACCTGGGAC+CGG | 0.525973 | 3_1:+8408511 | Msa0347400:CDS |
| ATTGGTAAAACTTTCAAGCA+TGG | 0.527566 | 3_1:-8409545 | None:intergenic |
| GTCACAGGATCCAAGTATCA+AGG | 0.533298 | 3_1:+8409225 | Msa0347400:intron |
| TTTGATTTCTCAGCAATGAG+TGG | 0.534737 | 3_1:+8408568 | Msa0347400:CDS |
| TGCTGAGAAATCAAAAGGGT+TGG | 0.535067 | 3_1:-8408560 | None:intergenic |
| CCAGGTGGAAAACCGGTCCC+AGG | 0.535701 | 3_1:-8408523 | None:intergenic |
| GTGGCCTTGCTCCTTGAAAA+CGG | 0.539036 | 3_1:+8411643 | Msa0347400:CDS |
| CCTGGGTAATGCATTGATGC+AGG | 0.543657 | 3_1:+8409426 | Msa0347400:CDS |
| CGAACGCAACTCCCGGACCT+GGG | 0.544955 | 3_1:+8408506 | Msa0347400:CDS |
| TCAAGCTGAACTTTATTGGA+CGG | 0.545387 | 3_1:-8409568 | None:intergenic |
| AGATCCATCATTCAATCAGA+TGG | 0.548584 | 3_1:+8409270 | Msa0347400:CDS |
| CAGCTTCAGAAAACTTTGCA+TGG | 0.549622 | 3_1:+8409298 | Msa0347400:CDS |
| ACATCCTCGAACGCAACTCC+CGG | 0.550672 | 3_1:+8408499 | Msa0347400:CDS |
| ATGACCATGGCTGAGCGCCT+GGG | 0.553159 | 3_1:+8409409 | Msa0347400:CDS |
| GCCAGATGAAACAGAAGATG+TGG | 0.557340 | 3_1:+8409885 | Msa0347400:CDS |
| TTTGCATGGAGGAGCACCAC+AGG | 0.559317 | 3_1:+8409312 | Msa0347400:CDS |
| AGTACTCTGCAAAATATGGA+TGG | 0.567263 | 3_1:+8411808 | Msa0347400:intron |
| ATTTGCCATGACCTGTTGCA+TGG | 0.569040 | 3_1:-8409377 | None:intergenic |
| GTTCATCATACTGCTAGTGT+TGG | 0.576940 | 3_1:+8409928 | Msa0347400:CDS |
| AAGAAGTTGGGACTAGCCAT+GGG | 0.580948 | 3_1:+8409814 | Msa0347400:CDS |
| GCTGCATCTCCAGAGGTTGG+AGG | 0.582935 | 3_1:-8409841 | None:intergenic |
| CAAGCATGGAAGACATCGAT+GGG | 0.587730 | 3_1:-8409531 | None:intergenic |
| ATAAACCTCATCATTACAGC+AGG | 0.589232 | 3_1:-8409661 | None:intergenic |
| TCAGCCATCTGATTGAATGA+TGG | 0.589706 | 3_1:-8409274 | None:intergenic |
| TAAGGATGAAGAAGATTCAG+AGG | 0.591403 | 3_1:+8410965 | Msa0347400:CDS |
| TAATTGCAAGGCATGCATGA+TGG | 0.592113 | 3_1:+8411907 | Msa0347400:exon |
| TTGGCTGGAAAACCAGTCCC+AGG | 0.592571 | 3_1:-8408541 | None:intergenic |
| TCAAGCATGGAAGACATCGA+TGG | 0.593586 | 3_1:-8409532 | None:intergenic |
| GTACTCTGCAAAATATGGAT+GGG | 0.595986 | 3_1:+8411809 | Msa0347400:intron |
| AGAAGCAGCTGCATCTCCAG+AGG | 0.600724 | 3_1:-8409848 | None:intergenic |
| TGCAGCAGGTTATGGCAGGA+AGG | 0.601460 | 3_1:+8411615 | Msa0347400:CDS |
| AAGGATGAAGAAGATTCAGA+GGG | 0.609631 | 3_1:+8410966 | Msa0347400:CDS |
| ATTACCCAGGCGCTCAGCCA+TGG | 0.617162 | 3_1:-8409413 | None:intergenic |
| TTCATCCTTATCAGCACCAG+AGG | 0.620315 | 3_1:-8410952 | None:intergenic |
| TGCTAGTGTTGGTGACATTG+AGG | 0.628525 | 3_1:+8409939 | Msa0347400:CDS |
| TCATTGCTGAGAAATCAAAA+GGG | 0.629369 | 3_1:-8408564 | None:intergenic |
| AAAGAAAATGGAAACTTGAG+GGG | 0.632524 | 3_1:+8411948 | Msa0347400:three_prime_UTR |
| CATGGAGGAGCACCACAGGA+TGG | 0.634179 | 3_1:+8409316 | Msa0347400:CDS |
| AGACGAGAAAGCTGGTTCAG+CGG | 0.641290 | 3_1:+8408453 | Msa0347400:intron |
| TAGATACTGGAATGATGAGG+AGG | 0.645865 | 3_1:+8409786 | Msa0347400:intron |
| CCTGCATCAATGCATTACCC+AGG | 0.649558 | 3_1:-8409426 | None:intergenic |
| CCAGATGAAACAGAAGATGT+GGG | 0.652505 | 3_1:+8409886 | Msa0347400:CDS |
| AGAGGTTGGAGGAATGCCCA+TGG | 0.656046 | 3_1:-8409830 | None:intergenic |
| ATCTAGATACTGGAATGATG+AGG | 0.659169 | 3_1:+8409783 | Msa0347400:intron |
| GGAGGAGCACCACAGGATGG+TGG | 0.665535 | 3_1:+8409319 | Msa0347400:CDS |
| CATCTTTCTCAAGAAGCTGG+AGG | 0.671030 | 3_1:-8411876 | None:intergenic |
| TTATGGCAGGAAGGAATGTG+TGG | 0.674267 | 3_1:+8411624 | Msa0347400:CDS |
| TTAGGGAGACCACCATCCTG+TGG | 0.684695 | 3_1:-8409328 | None:intergenic |
| GCTGGAAAACCAGTCCCAGG+TGG | 0.687890 | 3_1:-8408538 | None:intergenic |
| GTGTGCGCAAGCTCTCCTTG+AGG | 0.688818 | 3_1:+8411540 | Msa0347400:CDS |
| GCGGTCCTGCTGTAATGATG+AGG | 0.692207 | 3_1:+8409656 | Msa0347400:CDS |
| CTTCAGAAAACTTTGCATGG+AGG | 0.695368 | 3_1:+8409301 | Msa0347400:CDS |
| TTAGATGAGATAGAGAATGG+CGG | 0.730427 | 3_1:+8409637 | Msa0347400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTCTTTTTTAAAAA+TGG | - | chr3_1:8409690-8409709 | None:intergenic | 10.0% |
| !!! | AAAAAGAAAATCATATTTTA+TGG | + | chr3_1:8409696-8409715 | Msa0347400:intron | 10.0% |
| !!! | GTTATAAATAAGAAATTTTA+TGG | - | chr3_1:8412043-8412062 | None:intergenic | 10.0% |
| !! | AGCAAAATTAAGAATAATTA+AGG | - | chr3_1:8407559-8407578 | None:intergenic | 15.0% |
| !! | ATCTTTGTAATAATCATTTA+AGG | + | chr3_1:8408999-8409018 | Msa0347400:intron | 15.0% |
| !!! | TAGTTAAATAGTTTTATACA+TGG | - | chr3_1:8409173-8409192 | None:intergenic | 15.0% |
| !!! | AAAATCATATTTTATGGTTT+TGG | + | chr3_1:8409702-8409721 | Msa0347400:intron | 15.0% |
| !! | ATAAATAAATAATACAATGG+TGG | - | chr3_1:8410860-8410879 | None:intergenic | 15.0% |
| !! | CCATTGTATTATTTATTTAT+CGG | + | chr3_1:8410860-8410879 | Msa0347400:intron | 15.0% |
| !! | AAAAACGAATAACAATTTCT+AGG | - | chr3_1:8407651-8407670 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTTGTTCACTAT+CGG | + | chr3_1:8407783-8407802 | Msa0347400:intron | 20.0% |
| !! | TGTACAAAAAAAACATAATC+AGG | - | chr3_1:8407843-8407862 | None:intergenic | 20.0% |
| !!! | TGAGTTTGATTTTTTTTTTG+TGG | + | chr3_1:8407883-8407902 | Msa0347400:intron | 20.0% |
| !! | ACATAATTGAATATAATCAC+AGG | + | chr3_1:8407980-8407999 | Msa0347400:intron | 20.0% |
| !! | CATATTAGTAAAAATCACAT+AGG | - | chr3_1:8408200-8408219 | None:intergenic | 20.0% |
| !!! | CTATGTGATTTTTACTAATA+TGG | + | chr3_1:8408198-8408217 | Msa0347400:intron | 20.0% |
| !! | TATTTGTATAGACAATACAA+AGG | + | chr3_1:8408231-8408250 | Msa0347400:intron | 20.0% |
| !! | ATTTGTATAGACAATACAAA+GGG | + | chr3_1:8408232-8408251 | Msa0347400:intron | 20.0% |
| !!! | CAAAATTAGTAAAGTGTTAT+TGG | - | chr3_1:8408330-8408349 | None:intergenic | 20.0% |
| !! | TACATCAATAACAATTAACA+GGG | - | chr3_1:8408676-8408695 | None:intergenic | 20.0% |
| !! | TTACATCAATAACAATTAAC+AGG | - | chr3_1:8408677-8408696 | None:intergenic | 20.0% |
| !! | AATACTATTATGATCCAAAT+TGG | - | chr3_1:8408964-8408983 | None:intergenic | 20.0% |
| !!! | TTTATTGAAGAGTTTAAGTT+AGG | + | chr3_1:8409039-8409058 | Msa0347400:intron | 20.0% |
| !! | TATAAAACTATTTAACTACG+TGG | + | chr3_1:8409175-8409194 | Msa0347400:intron | 20.0% |
| !! | ATACATTCTTATCTAACAAT+CGG | - | chr3_1:8409493-8409512 | None:intergenic | 20.0% |
| !!! | TCTAAAATATGTTTCAAAGA+TGG | - | chr3_1:8409622-8409641 | None:intergenic | 20.0% |
| !! | ATTTACATAACAAATTATGG+TGG | - | chr3_1:8409733-8409752 | None:intergenic | 20.0% |
| !! | CCAATTTACATAACAAATTA+TGG | - | chr3_1:8409736-8409755 | None:intergenic | 20.0% |
| !!! | CCATAATTTGTTATGTAAAT+TGG | + | chr3_1:8409733-8409752 | Msa0347400:intron | 20.0% |
| !!! | ATGAAACTTTTTTGAATAGA+AGG | + | chr3_1:8410043-8410062 | Msa0347400:intron | 20.0% |
| !! | GAATTTAAAGAGATGAAAAT+AGG | + | chr3_1:8410095-8410114 | Msa0347400:intron | 20.0% |
| !!! | TTGTTTAAGGTAATATCAAA+AGG | + | chr3_1:8410174-8410193 | Msa0347400:intron | 20.0% |
| !!! | AAACTGATATATTTTTCGAA+AGG | - | chr3_1:8410275-8410294 | None:intergenic | 20.0% |
| !!! | AGAATTTTATTTTTCTCAAG+AGG | - | chr3_1:8410348-8410367 | None:intergenic | 20.0% |
| !! | ATTACTATAATACTTATGCA+TGG | - | chr3_1:8410427-8410446 | None:intergenic | 20.0% |
| !! | TGTTTATTTGTTTAATTCGA+AGG | + | chr3_1:8410744-8410763 | Msa0347400:intron | 20.0% |
| !! | CCGATAAATAAATAATACAA+TGG | - | chr3_1:8410863-8410882 | None:intergenic | 20.0% |
| !! | AGTATTTACACTAATCAATT+AGG | + | chr3_1:8410911-8410930 | Msa0347400:intron | 20.0% |
| !! | GTATTTACACTAATCAATTA+GGG | + | chr3_1:8410912-8410931 | Msa0347400:intron | 20.0% |
| !!! | TACATAAATTCTAAGAAACA+AGG | - | chr3_1:8411078-8411097 | None:intergenic | 20.0% |
| !!! | AGAATTTATGTATTTGTTGT+TGG | + | chr3_1:8411086-8411105 | Msa0347400:intron | 20.0% |
| !!! | TCGTTTTTTTTCAGATATCT+AGG | + | chr3_1:8407663-8407682 | Msa0347400:intron | 25.0% |
| ! | AATTATAGATAGATACCAGA+AGG | - | chr3_1:8407727-8407746 | None:intergenic | 25.0% |
| ! | TTACCTATAAAACACAAACA+TGG | + | chr3_1:8407911-8407930 | Msa0347400:intron | 25.0% |
| !!! | ATGTGCTTTAATTTTACTCT+TGG | + | chr3_1:8408420-8408439 | Msa0347400:intron | 25.0% |
| !!! | AAATTCTGAACTTTTTTCAG+AGG | + | chr3_1:8408829-8408848 | Msa0347400:intron | 25.0% |
| ! | AAAATGAAAAGAGAAAGAGT+CGG | - | chr3_1:8409105-8409124 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTCACTCACTA+GGG | + | chr3_1:8409115-8409134 | Msa0347400:intron | 25.0% |
| ! | TTAAAATGTCAATATGTCAC+AGG | + | chr3_1:8409210-8409229 | Msa0347400:intron | 25.0% |
| !! | AAATCCTAATTTTATGACCA+TGG | + | chr3_1:8409396-8409415 | Msa0347400:CDS | 25.0% |
| !! | ATTTTAGATGAGATAGAGAA+TGG | + | chr3_1:8409634-8409653 | Msa0347400:CDS | 25.0% |
| !! | AATTCTTTTCATCTAGATAC+TGG | + | chr3_1:8409773-8409792 | Msa0347400:intron | 25.0% |
| ! | AAAGCTTATAGAATGATAGT+TGG | - | chr3_1:8410232-8410251 | None:intergenic | 25.0% |
| !! | ACTATCATTCTATAAGCTTT+TGG | + | chr3_1:8410232-8410251 | Msa0347400:intron | 25.0% |
| !! | CTATCATTCTATAAGCTTTT+GGG | + | chr3_1:8410233-8410252 | Msa0347400:intron | 25.0% |
| !! | AACGTTGTGTTCTAATTTTA+GGG | - | chr3_1:8410509-8410528 | None:intergenic | 25.0% |
| !! | TAACGTTGTGTTCTAATTTT+AGG | - | chr3_1:8410510-8410529 | None:intergenic | 25.0% |
| !!! | CCAGTAAAACACAATTTTTT+GGG | + | chr3_1:8410640-8410659 | Msa0347400:intron | 25.0% |
| ! | TTAATCCATACATTGGAATT+TGG | - | chr3_1:8411492-8411511 | None:intergenic | 25.0% |
| !!! | GCATATTTTAATCCATACAT+TGG | - | chr3_1:8411499-8411518 | None:intergenic | 25.0% |
| !! | TTTAATTTCGCAACATCTAT+AGG | - | chr3_1:8411841-8411860 | None:intergenic | 25.0% |
| !! | TCAAGTTTCCATTTTCTTTT+TGG | - | chr3_1:8411947-8411966 | None:intergenic | 25.0% |
| ! | AAAAAGAAAATGGAAACTTG+AGG | + | chr3_1:8411946-8411965 | Msa0347400:three_prime_UTR | 25.0% |
| ! | AAAAGAAAATGGAAACTTGA+GGG | + | chr3_1:8411947-8411966 | Msa0347400:three_prime_UTR | 25.0% |
| !! | GAAAAAACAAAAGCATGATA+TGG | + | chr3_1:8411970-8411989 | Msa0347400:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTAACACAACGAT+GGG | - | chr3_1:8412012-8412031 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTTAACACAACGA+TGG | - | chr3_1:8412013-8412032 | None:intergenic | 25.0% |
| !! | AGGAATATCCTTTTGAGAAT+TGG | - | chr3_1:8407707-8407726 | None:intergenic | 30.0% |
| ! | TGTCCATGTTTGTGTTTTAT+AGG | - | chr3_1:8407917-8407936 | None:intergenic | 30.0% |
| ! | GAAGTGTGTTATTGTTGTAT+TGG | + | chr3_1:8408057-8408076 | Msa0347400:intron | 30.0% |
| AACACACTTATCATGATATC+TGG | - | chr3_1:8408092-8408111 | None:intergenic | 30.0% | |
| ! | TAAGTGTGTTATTGTCATGT+TGG | + | chr3_1:8408102-8408121 | Msa0347400:intron | 30.0% |
| TAGACACTTATCCTTTACTT+AGG | + | chr3_1:8408263-8408282 | Msa0347400:intron | 30.0% | |
| AGACACTTATCCTTTACTTA+GGG | + | chr3_1:8408264-8408283 | Msa0347400:intron | 30.0% | |
| !! | CTAATTTTGCTGTAGTCTTT+TGG | + | chr3_1:8408341-8408360 | Msa0347400:intron | 30.0% |
| !!! | ATTTTTTTAGACGAGAAAGC+TGG | + | chr3_1:8408445-8408464 | Msa0347400:intron | 30.0% |
| TCATTGCTGAGAAATCAAAA+GGG | - | chr3_1:8408567-8408586 | None:intergenic | 30.0% | |
| ! | TGCTATTTGCATTATATGTG+TGG | + | chr3_1:8408624-8408643 | Msa0347400:intron | 30.0% |
| !! | ACATGCATGTTTTTATAAGC+TGG | + | chr3_1:8408726-8408745 | Msa0347400:intron | 30.0% |
| !!! | TTCTGGGAATAGGTTTTATT+AGG | + | chr3_1:8408803-8408822 | Msa0347400:intron | 30.0% |
| !!! | TCTGGGAATAGGTTTTATTA+GGG | + | chr3_1:8408804-8408823 | Msa0347400:intron | 30.0% |
| TAAGTTAGGTGAAGAATTTG+AGG | + | chr3_1:8409053-8409072 | Msa0347400:intron | 30.0% | |
| AAATGAAAAGAGAAAGAGTC+GGG | - | chr3_1:8409104-8409123 | None:intergenic | 30.0% | |
| !! | CTTTTCATTTTTCACTCACT+AGG | + | chr3_1:8409114-8409133 | Msa0347400:intron | 30.0% |
| ! | ACTGCTGATTATCAAAGTTA+GGG | - | chr3_1:8409348-8409367 | None:intergenic | 30.0% |
| ! | TACTGCTGATTATCAAAGTT+AGG | - | chr3_1:8409349-8409368 | None:intergenic | 30.0% |
| ATTGGTAAAACTTTCAAGCA+TGG | - | chr3_1:8409548-8409567 | None:intergenic | 30.0% | |
| !!! | CATATTGACTTTTCGCAATA+TGG | + | chr3_1:8409967-8409986 | Msa0347400:intron | 30.0% |
| ACAAATTTGTAGTTGTGCTT+GGG | + | chr3_1:8410019-8410038 | Msa0347400:intron | 30.0% | |
| GTAATTAATTGTCTCACAGT+TGG | + | chr3_1:8410126-8410145 | Msa0347400:intron | 30.0% | |
| GTTTCTGCATGAATTGTTTA+AGG | + | chr3_1:8410161-8410180 | Msa0347400:intron | 30.0% | |
| ! | ATGGAATCATTTTCAAACCA+AGG | - | chr3_1:8410408-8410427 | None:intergenic | 30.0% |
| TTATAGTAATGTAGTCCACT+AGG | + | chr3_1:8410437-8410456 | Msa0347400:intron | 30.0% | |
| AGTTTATTGAAGCAAGTTCT+AGG | + | chr3_1:8410533-8410552 | Msa0347400:intron | 30.0% | |
| GGAATATAAGTCAATTGAGT+AGG | - | chr3_1:8410580-8410599 | None:intergenic | 30.0% | |
| !!! | GCCAGTAAAACACAATTTTT+TGG | + | chr3_1:8410639-8410658 | Msa0347400:intron | 30.0% |
| ! | CCCAAAAAATTGTGTTTTAC+TGG | - | chr3_1:8410643-8410662 | None:intergenic | 30.0% |
| ATTGCTCCTTTCTTTAGTAT+TGG | + | chr3_1:8410789-8410808 | Msa0347400:intron | 30.0% | |
| AGCAAACCAATACTAAAGAA+AGG | - | chr3_1:8410798-8410817 | None:intergenic | 30.0% | |
| ! | TTACATTTTGCTTGTGGTTA+CGG | + | chr3_1:8410999-8411018 | Msa0347400:CDS | 30.0% |
| ! | AGTACTTTCATTTAGAACCA+TGG | + | chr3_1:8411111-8411130 | Msa0347400:intron | 30.0% |
| GAAGAAAATCACAATGCTAT+AGG | - | chr3_1:8411189-8411208 | None:intergenic | 30.0% | |
| TAGAATATTAGATTCTAGCC+TGG | + | chr3_1:8411342-8411361 | Msa0347400:intron | 30.0% | |
| !! | GAATTTTGACGATTCTAGTT+TGG | + | chr3_1:8411461-8411480 | Msa0347400:intron | 30.0% |
| TTCTTCCAAATTCCAATGTA+TGG | + | chr3_1:8411484-8411503 | Msa0347400:intron | 30.0% | |
| AACAAGATGTAGGAAGAAAT+TGG | - | chr3_1:8411728-8411747 | None:intergenic | 30.0% | |
| !! | TTCCATTTTCTTTTTGGTGA+CGG | - | chr3_1:8411941-8411960 | None:intergenic | 30.0% |
| AAAGAAAATGGAAACTTGAG+GGG | + | chr3_1:8411948-8411967 | Msa0347400:three_prime_UTR | 30.0% | |
| TCAACGAAATGAAACCATTA+CGG | - | chr3_1:8412112-8412131 | None:intergenic | 30.0% | |
| !!! | GAGTGTTTTTGGTTTAAGAG+AGG | - | chr3_1:8407454-8407473 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCAGATTC+AGG | + | chr3_1:8407511-8407530 | Msa0347400:five_prime_UTR | 35.0% | |
| TCTCAAAAGGATATTCCTTC+TGG | + | chr3_1:8407709-8407728 | Msa0347400:CDS | 35.0% | |
| !!! | TATTGTCGTCTTGGTTTTGT+TGG | + | chr3_1:8408006-8408025 | Msa0347400:intron | 35.0% |
| GTAATATATGTAACACCGAC+AGG | - | chr3_1:8408136-8408155 | None:intergenic | 35.0% | |
| AAAATCGCATAGGAAGATAC+TGG | - | chr3_1:8408165-8408184 | None:intergenic | 35.0% | |
| GACACTAGTAAAAATCGCAT+AGG | - | chr3_1:8408175-8408194 | None:intergenic | 35.0% | |
| CTCATTGCTGAGAAATCAAA+AGG | - | chr3_1:8408568-8408587 | None:intergenic | 35.0% | |
| ! | TTTGATTTCTCAGCAATGAG+TGG | + | chr3_1:8408568-8408587 | Msa0347400:CDS | 35.0% |
| TGTCATCGTACAATGATTCT+GGG | + | chr3_1:8408787-8408806 | Msa0347400:intron | 35.0% | |
| AGCTTTCCATATCATGATAG+TGG | + | chr3_1:8408916-8408935 | Msa0347400:intron | 35.0% | |
| CTGATTCCACTATCATGATA+TGG | - | chr3_1:8408925-8408944 | None:intergenic | 35.0% | |
| AAATTGGCAGCAACTACAAA+AGG | - | chr3_1:8408948-8408967 | None:intergenic | 35.0% | |
| ! | TTTTGTAGTTGCTGCCAATT+TGG | + | chr3_1:8408947-8408966 | Msa0347400:intron | 35.0% |
| AGATCCATCATTCAATCAGA+TGG | + | chr3_1:8409270-8409289 | Msa0347400:CDS | 35.0% | |
| TCAGCCATGGTCATAAAATT+AGG | - | chr3_1:8409403-8409422 | None:intergenic | 35.0% | |
| ATGTATATGCTGTCTATCAC+AGG | + | chr3_1:8409507-8409526 | Msa0347400:intron | 35.0% | |
| TCAAGCTGAACTTTATTGGA+CGG | - | chr3_1:8409571-8409590 | None:intergenic | 35.0% | |
| CTCTTCAAGCTGAACTTTAT+TGG | - | chr3_1:8409575-8409594 | None:intergenic | 35.0% | |
| TTAGATGAGATAGAGAATGG+CGG | + | chr3_1:8409637-8409656 | Msa0347400:CDS | 35.0% | |
| ATAAACCTCATCATTACAGC+AGG | - | chr3_1:8409664-8409683 | None:intergenic | 35.0% | |
| ATCTAGATACTGGAATGATG+AGG | + | chr3_1:8409783-8409802 | Msa0347400:intron | 35.0% | |
| ! | CTGCTTCTTCTGAAAATTCT+GGG | + | chr3_1:8409863-8409882 | Msa0347400:CDS | 35.0% |
| GACAAATTTGTAGTTGTGCT+TGG | + | chr3_1:8410018-8410037 | Msa0347400:intron | 35.0% | |
| TGAACTAAACCTAACCACAT+CGG | - | chr3_1:8410071-8410090 | None:intergenic | 35.0% | |
| TTCTATTCCAAACAACTCCT+TGG | + | chr3_1:8410388-8410407 | Msa0347400:intron | 35.0% | |
| TTTCAAACCAAGGAGTTGTT+TGG | - | chr3_1:8410398-8410417 | None:intergenic | 35.0% | |
| !!! | GCGGGTGTTTTATTTCTTTA+AGG | - | chr3_1:8410469-8410488 | None:intergenic | 35.0% |
| ACTTCCCTGAGTAACTTATA+AGG | + | chr3_1:8410604-8410623 | Msa0347400:intron | 35.0% | |
| TCCTCCTTATAAGTTACTCA+GGG | - | chr3_1:8410611-8410630 | None:intergenic | 35.0% | |
| ATCCTCCTTATAAGTTACTC+AGG | - | chr3_1:8410612-8410631 | None:intergenic | 35.0% | |
| TAAGGATGAAGAAGATTCAG+AGG | + | chr3_1:8410965-8410984 | Msa0347400:CDS | 35.0% | |
| AAGGATGAAGAAGATTCAGA+GGG | + | chr3_1:8410966-8410985 | Msa0347400:CDS | 35.0% | |
| ! | ACTGCTTTACATTTTGCTTG+TGG | + | chr3_1:8410993-8411012 | Msa0347400:CDS | 35.0% |
| ! | GCCTGGTTCTTGTATATATA+TGG | + | chr3_1:8411359-8411378 | Msa0347400:intron | 35.0% |
| GCCATATATATACAAGAACC+AGG | - | chr3_1:8411363-8411382 | None:intergenic | 35.0% | |
| ATATGCTCCTGATATATTCC+AGG | + | chr3_1:8411513-8411532 | Msa0347400:intron | 35.0% | |
| ATACCACTACAACAAGATGT+AGG | - | chr3_1:8411738-8411757 | None:intergenic | 35.0% | |
| ! | CATCTTGTTGTAGTGGTATT+TGG | + | chr3_1:8411739-8411758 | Msa0347400:intron | 35.0% |
| TTGCAGTACTCTGCAAAATA+TGG | + | chr3_1:8411804-8411823 | Msa0347400:intron | 35.0% | |
| AGTACTCTGCAAAATATGGA+TGG | + | chr3_1:8411808-8411827 | Msa0347400:intron | 35.0% | |
| GTACTCTGCAAAATATGGAT+GGG | + | chr3_1:8411809-8411828 | Msa0347400:intron | 35.0% | |
| AAACATCTTTCTCAAGAAGC+TGG | - | chr3_1:8411882-8411901 | None:intergenic | 35.0% | |
| ! | GATGTTTTCCTGTAATTGCA+AGG | + | chr3_1:8411895-8411914 | Msa0347400:exon | 35.0% |
| ! | GTTGTCGCAAAATTCTCTTT+TGG | + | chr3_1:8412155-8412174 | Msa0347400:three_prime_UTR | 35.0% |
| ATAATGAGATCCAGATCTGT+TGG | + | chr3_1:8412197-8412216 | Msa0347400:three_prime_UTR | 35.0% | |
| TAATGAGATCCAGATCTGTT+GGG | + | chr3_1:8412198-8412217 | Msa0347400:three_prime_UTR | 35.0% | |
| ! | GACTTTTCCAACTCTCACAA+GGG | + | chr3_1:8407395-8407414 | Msa0347400:five_prime_UTR | 40.0% |
| AGAAAAACCCTTGTGAGAGT+TGG | - | chr3_1:8407405-8407424 | None:intergenic | 40.0% | |
| !!! | AGAGTGTGAGAGAGTGTTTT+TGG | - | chr3_1:8407465-8407484 | None:intergenic | 40.0% |
| GAAGAAGAAGAAGAGCGATA+AGG | - | chr3_1:8407496-8407515 | None:intergenic | 40.0% | |
| TATCTAGGTTTCTTCGCTCA+TGG | + | chr3_1:8407678-8407697 | Msa0347400:intron | 40.0% | |
| CATGGCTTCCAATTCTCAAA+AGG | + | chr3_1:8407696-8407715 | Msa0347400:exon | 40.0% | |
| TGCTGAGAAATCAAAAGGGT+TGG | - | chr3_1:8408563-8408582 | None:intergenic | 40.0% | |
| TTTATAAGCTGGTCATGCGT+TGG | + | chr3_1:8408737-8408756 | Msa0347400:intron | 40.0% | |
| ACAGGCTGCAAAATTGCAAA+TGG | - | chr3_1:8408770-8408789 | None:intergenic | 40.0% | |
| CAGAATCATTGTACGATGAC+AGG | - | chr3_1:8408788-8408807 | None:intergenic | 40.0% | |
| CTGTCATCGTACAATGATTC+TGG | + | chr3_1:8408786-8408805 | Msa0347400:intron | 40.0% | |
| ! | CGTACAATGATTCTGGGAAT+AGG | + | chr3_1:8408793-8408812 | Msa0347400:intron | 40.0% |
| !! | TAAAGAACGCTTTTTGCCGA+CGG | - | chr3_1:8408864-8408883 | None:intergenic | 40.0% |
| ! | GGACTTTTGAACTCATCGTA+TGG | + | chr3_1:8409074-8409093 | Msa0347400:intron | 40.0% |
| GGATCCAAGTATCAAGGAAT+TGG | + | chr3_1:8409231-8409250 | Msa0347400:intron | 40.0% | |
| TCAGCCAATTCCTTGATACT+TGG | - | chr3_1:8409238-8409257 | None:intergenic | 40.0% | |
| TCAGCCATCTGATTGAATGA+TGG | - | chr3_1:8409277-8409296 | None:intergenic | 40.0% | |
| CAGCTTCAGAAAACTTTGCA+TGG | + | chr3_1:8409298-8409317 | Msa0347400:CDS | 40.0% | |
| CTTCAGAAAACTTTGCATGG+AGG | + | chr3_1:8409301-8409320 | Msa0347400:CDS | 40.0% | |
| GTATCTTTCATCCATGCAAC+AGG | + | chr3_1:8409366-8409385 | Msa0347400:CDS | 40.0% | |
| CTGAACTTTATTGGACGGAT+TGG | - | chr3_1:8409566-8409585 | None:intergenic | 40.0% | |
| AGTTCAGCTTGAAGAGAGAA+TGG | + | chr3_1:8409579-8409598 | Msa0347400:CDS | 40.0% | |
| TAGATACTGGAATGATGAGG+AGG | + | chr3_1:8409786-8409805 | Msa0347400:intron | 40.0% | |
| !!! | TGAGGAGGTTTTGAAGAAGT+TGG | + | chr3_1:8409801-8409820 | Msa0347400:CDS | 40.0% |
| !!! | GAGGAGGTTTTGAAGAAGTT+GGG | + | chr3_1:8409802-8409821 | Msa0347400:CDS | 40.0% |
| ! | GCTGCTTCTTCTGAAAATTC+TGG | + | chr3_1:8409862-8409881 | Msa0347400:CDS | 40.0% |
| CCAGATGAAACAGAAGATGT+GGG | + | chr3_1:8409886-8409905 | Msa0347400:CDS | 40.0% | |
| GTTCATCATACTGCTAGTGT+TGG | + | chr3_1:8409928-8409947 | Msa0347400:CDS | 40.0% | |
| !! | AGCTTTTGGGAGCTTCATAT+TGG | + | chr3_1:8410246-8410265 | Msa0347400:intron | 40.0% |
| !! | GCTTTTGGGAGCTTCATATT+GGG | + | chr3_1:8410247-8410266 | Msa0347400:intron | 40.0% |
| AGTAATGTAGTCCACTAGGT+TGG | + | chr3_1:8410441-8410460 | Msa0347400:intron | 40.0% | |
| !! | TCTTTAAGGTACCAACCTAG+TGG | - | chr3_1:8410455-8410474 | None:intergenic | 40.0% |
| GCAAAAAATACTTCTGCAGC+GGG | - | chr3_1:8410487-8410506 | None:intergenic | 40.0% | |
| GGCAAAAAATACTTCTGCAG+CGG | - | chr3_1:8410488-8410507 | None:intergenic | 40.0% | |
| TCCCTGAGTAACTTATAAGG+AGG | + | chr3_1:8410607-8410626 | Msa0347400:intron | 40.0% | |
| TTGTGTATGCCCTTGTGTAA+AGG | + | chr3_1:8410709-8410728 | Msa0347400:intron | 40.0% | |
| AGCATGCAACCTTTACACAA+GGG | - | chr3_1:8410721-8410740 | None:intergenic | 40.0% | |
| AAGCATGCAACCTTTACACA+AGG | - | chr3_1:8410722-8410741 | None:intergenic | 40.0% | |
| TCTTCACTTGCTTTACACCA+TGG | - | chr3_1:8411131-8411150 | None:intergenic | 40.0% | |
| AGCAAGTGAAGAATGTAACG+AGG | + | chr3_1:8411139-8411158 | Msa0347400:intron | 40.0% | |
| CGGACAGTATTCATAATGCT+TGG | + | chr3_1:8411223-8411242 | Msa0347400:intron | 40.0% | |
| CAGTAGTGTCATCATTGAGT+CGG | - | chr3_1:8411293-8411312 | None:intergenic | 40.0% | |
| GACTCAATGATGACACTACT+GGG | + | chr3_1:8411292-8411311 | Msa0347400:intron | 40.0% | |
| ACAATGCTGCTATGCTCATT+TGG | + | chr3_1:8411316-8411335 | Msa0347400:intron | 40.0% | |
| CACTTCACCTGGAATATATC+AGG | - | chr3_1:8411523-8411542 | None:intergenic | 40.0% | |
| TGGAGCAAAAGTAGATGCTT+TGG | + | chr3_1:8411564-8411583 | Msa0347400:CDS | 40.0% | |
| CTTCATTATGCAGCAGGTTA+TGG | + | chr3_1:8411607-8411626 | Msa0347400:CDS | 40.0% | |
| GAAATTGGCATGAACAGTTG+AGG | - | chr3_1:8411713-8411732 | None:intergenic | 40.0% | |
| ! | CTTCCTACATCTTGTTGTAG+TGG | + | chr3_1:8411732-8411751 | Msa0347400:intron | 40.0% |
| TAATTGCAAGGCATGCATGA+TGG | + | chr3_1:8411907-8411926 | Msa0347400:exon | 40.0% | |
| TGCCGTCACCAAAAAGAAAA+TGG | + | chr3_1:8411936-8411955 | Msa0347400:three_prime_UTR | 40.0% | |
| TATCAAGATTAGCGCCGTAA+TGG | + | chr3_1:8412095-8412114 | Msa0347400:three_prime_UTR | 40.0% | |
| ! | GGACTTTTCCAACTCTCACA+AGG | + | chr3_1:8407394-8407413 | Msa0347400:five_prime_UTR | 45.0% |
| !! | CACAGGTGTTATTGTCGTCT+TGG | + | chr3_1:8407997-8408016 | Msa0347400:intron | 45.0% |
| !!! | CGTCTTGGTTTTGTTGGTGT+TGG | + | chr3_1:8408012-8408031 | Msa0347400:intron | 45.0% |
| GTGCAGTACACCCTAAGTAA+AGG | - | chr3_1:8408277-8408296 | None:intergenic | 45.0% | |
| ! | GAGAAATCAAAAGGGTTGGC+TGG | - | chr3_1:8408559-8408578 | None:intergenic | 45.0% |
| !! | AAAGAACGCTTTTTGCCGAC+GGG | - | chr3_1:8408863-8408882 | None:intergenic | 45.0% |
| GTCACAGGATCCAAGTATCA+AGG | + | chr3_1:8409225-8409244 | Msa0347400:intron | 45.0% | |
| TTCATCCATGCAACAGGTCA+TGG | + | chr3_1:8409372-8409391 | Msa0347400:CDS | 45.0% | |
| ATTTGCCATGACCTGTTGCA+TGG | - | chr3_1:8409380-8409399 | None:intergenic | 45.0% | |
| CAAGCATGGAAGACATCGAT+GGG | - | chr3_1:8409534-8409553 | None:intergenic | 45.0% | |
| TCAAGCATGGAAGACATCGA+TGG | - | chr3_1:8409535-8409554 | None:intergenic | 45.0% | |
| AGAGAGAATGGCACGCATAA+AGG | + | chr3_1:8409591-8409610 | Msa0347400:CDS | 45.0% | |
| !! | AAGAAGTTGGGACTAGCCAT+GGG | + | chr3_1:8409814-8409833 | Msa0347400:CDS | 45.0% |
| GCCAGATGAAACAGAAGATG+TGG | + | chr3_1:8409885-8409904 | Msa0347400:CDS | 45.0% | |
| CCCACATCTTCTGTTTCATC+TGG | - | chr3_1:8409889-8409908 | None:intergenic | 45.0% | |
| !! | TGCTAGTGTTGGTGACATTG+AGG | + | chr3_1:8409939-8409958 | Msa0347400:CDS | 45.0% |
| !! | TTGAATAGAAGGTGCCGATG+TGG | + | chr3_1:8410054-8410073 | Msa0347400:intron | 45.0% |
| AAGTTACTCAGGGAAGTCTG+TGG | - | chr3_1:8410601-8410620 | None:intergenic | 45.0% | |
| ! | CAATGGTGGAACTTCACAAC+AGG | - | chr3_1:8410846-8410865 | None:intergenic | 45.0% |
| TTCATCCTTATCAGCACCAG+AGG | - | chr3_1:8410955-8410974 | None:intergenic | 45.0% | |
| GTGAAGAATGTAACGAGGCT+CGG | + | chr3_1:8411144-8411163 | Msa0347400:intron | 45.0% | |
| TGAAGAATGTAACGAGGCTC+GGG | + | chr3_1:8411145-8411164 | Msa0347400:intron | 45.0% | |
| TTCTTCCACCACAGTGAACT+CGG | + | chr3_1:8411203-8411222 | Msa0347400:intron | 45.0% | |
| AATACTGTCCGAGTTCACTG+TGG | - | chr3_1:8411214-8411233 | None:intergenic | 45.0% | |
| CGACTCAATGATGACACTAC+TGG | + | chr3_1:8411291-8411310 | Msa0347400:intron | 45.0% | |
| ACAGCTCTTCATTATGCAGC+AGG | + | chr3_1:8411601-8411620 | Msa0347400:CDS | 45.0% | |
| ATTATGCAGCAGGTTATGGC+AGG | + | chr3_1:8411611-8411630 | Msa0347400:CDS | 45.0% | |
| TTATGGCAGGAAGGAATGTG+TGG | + | chr3_1:8411624-8411643 | Msa0347400:CDS | 45.0% | |
| CATCTTTCTCAAGAAGCTGG+AGG | - | chr3_1:8411879-8411898 | None:intergenic | 45.0% | |
| CATGCATGCCTTGCAATTAC+AGG | - | chr3_1:8411906-8411925 | None:intergenic | 45.0% | |
| ATATGTAACACCGACAGGCG+TGG | - | chr3_1:8408131-8408150 | None:intergenic | 50.0% | |
| ! | AGACGAGAAAGCTGGTTCAG+CGG | + | chr3_1:8408453-8408472 | Msa0347400:intron | 50.0% |
| AGCTGGTCATGCGTTGGATT+TGG | + | chr3_1:8408743-8408762 | Msa0347400:intron | 50.0% | |
| CCTGCATCAATGCATTACCC+AGG | - | chr3_1:8409429-8409448 | None:intergenic | 50.0% | |
| ! | CCTGGGTAATGCATTGATGC+AGG | + | chr3_1:8409426-8409445 | Msa0347400:CDS | 50.0% |
| !! | GAAGAAGTTGGGACTAGCCA+TGG | + | chr3_1:8409813-8409832 | Msa0347400:CDS | 50.0% |
| !! | TAGAAGGTGCCGATGTGGTT+AGG | + | chr3_1:8410059-8410078 | Msa0347400:intron | 50.0% |
| ! | TTTTGCTTGTGGTTACGGCG+AGG | + | chr3_1:8411004-8411023 | Msa0347400:CDS | 50.0% |
| AGAAGGAGGAGAGGGCTAAA+TGG | - | chr3_1:8411400-8411419 | None:intergenic | 50.0% | |
| TTTAGCCCTCTCCTCCTTCT+AGG | + | chr3_1:8411400-8411419 | Msa0347400:intron | 50.0% | |
| TTAGCCCTCTCCTCCTTCTA+GGG | + | chr3_1:8411401-8411420 | Msa0347400:intron | 50.0% | |
| TCTAACAAGCCCTCCCTAGA+AGG | - | chr3_1:8411417-8411436 | None:intergenic | 50.0% | |
| !! | CTACTTTTGCTCCAGCCTCA+AGG | - | chr3_1:8411558-8411577 | None:intergenic | 50.0% |
| ! | GTGGCCTTGCTCCTTGAAAA+CGG | + | chr3_1:8411643-8411662 | Msa0347400:CDS | 50.0% |
| !! | AGCACCGTTTTCAAGGAGCA+AGG | - | chr3_1:8411650-8411669 | None:intergenic | 50.0% |
| ! | ACACTGCAGCACCGTTTTCA+AGG | - | chr3_1:8411657-8411676 | None:intergenic | 50.0% |
| ATGTTGGACACCACGCCTGT+CGG | + | chr3_1:8408118-8408137 | Msa0347400:intron | 55.0% | |
| ACATCCTCGAACGCAACTCC+CGG | + | chr3_1:8408499-8408518 | Msa0347400:CDS | 55.0% | |
| ACCAGTCCCAGGTGGAAAAC+CGG | - | chr3_1:8408533-8408552 | None:intergenic | 55.0% | |
| TTGGCTGGAAAACCAGTCCC+AGG | - | chr3_1:8408544-8408563 | None:intergenic | 55.0% | |
| TCAGAGGTCTTCACACCCGT+CGG | + | chr3_1:8408845-8408864 | Msa0347400:intron | 55.0% | |
| !! | TTTGCATGGAGGAGCACCAC+AGG | + | chr3_1:8409312-8409331 | Msa0347400:CDS | 55.0% |
| TTAGGGAGACCACCATCCTG+TGG | - | chr3_1:8409331-8409350 | None:intergenic | 55.0% | |
| GCGGTCCTGCTGTAATGATG+AGG | + | chr3_1:8409656-8409675 | Msa0347400:CDS | 55.0% | |
| AGAGGTTGGAGGAATGCCCA+TGG | - | chr3_1:8409833-8409852 | None:intergenic | 55.0% | |
| ATGGGCATTCCTCCAACCTC+TGG | + | chr3_1:8409832-8409851 | Msa0347400:CDS | 55.0% | |
| AGAAGCAGCTGCATCTCCAG+AGG | - | chr3_1:8409851-8409870 | None:intergenic | 55.0% | |
| ! | TTGAAAGCTGCGCTAGCCTC+TGG | + | chr3_1:8410936-8410955 | Msa0347400:CDS | 55.0% |
| !! | GCTAGCCTCTGGTGCTGATA+AGG | + | chr3_1:8410947-8410966 | Msa0347400:CDS | 55.0% |
| ACTGTCCGAGTTCACTGTGG+TGG | - | chr3_1:8411211-8411230 | None:intergenic | 55.0% | |
| AACAAGCCCTCCCTAGAAGG+AGG | - | chr3_1:8411414-8411433 | None:intergenic | 55.0% | |
| TGCAGCAGGTTATGGCAGGA+AGG | + | chr3_1:8411615-8411634 | Msa0347400:CDS | 55.0% | |
| TGGAAAACCGGTCCCAGGTC+CGG | - | chr3_1:8408521-8408540 | None:intergenic | 60.0% | |
| !! | CTGGGACCGGTTTTCCACCT+GGG | + | chr3_1:8408524-8408543 | Msa0347400:CDS | 60.0% |
| !! | ACCGGTTTTCCACCTGGGAC+TGG | + | chr3_1:8408529-8408548 | Msa0347400:CDS | 60.0% |
| GCTGGAAAACCAGTCCCAGG+TGG | - | chr3_1:8408541-8408560 | None:intergenic | 60.0% | |
| !! | CATGGAGGAGCACCACAGGA+TGG | + | chr3_1:8409316-8409335 | Msa0347400:CDS | 60.0% |
| TATGACCATGGCTGAGCGCC+TGG | + | chr3_1:8409408-8409427 | Msa0347400:CDS | 60.0% | |
| ATGACCATGGCTGAGCGCCT+GGG | + | chr3_1:8409409-8409428 | Msa0347400:CDS | 60.0% | |
| ATTACCCAGGCGCTCAGCCA+TGG | - | chr3_1:8409416-8409435 | None:intergenic | 60.0% | |
| GCTGCATCTCCAGAGGTTGG+AGG | - | chr3_1:8409844-8409863 | None:intergenic | 60.0% | |
| GCAGCTGCATCTCCAGAGGT+TGG | - | chr3_1:8409847-8409866 | None:intergenic | 60.0% | |
| CCCTCCCTAGAAGGAGGAGA+GGG | - | chr3_1:8411408-8411427 | None:intergenic | 60.0% | |
| ! | CCCTCTCCTCCTTCTAGGGA+GGG | + | chr3_1:8411405-8411424 | Msa0347400:intron | 60.0% |
| GAGCTTGCGCACACTTCACC+TGG | - | chr3_1:8411534-8411553 | None:intergenic | 60.0% | |
| GTGTGCGCAAGCTCTCCTTG+AGG | + | chr3_1:8411540-8411559 | Msa0347400:CDS | 60.0% | |
| AGGTCCGGGAGTTGCGTTCG+AGG | - | chr3_1:8408506-8408525 | None:intergenic | 65.0% | |
| TCGAACGCAACTCCCGGACC+TGG | + | chr3_1:8408505-8408524 | Msa0347400:CDS | 65.0% | |
| CGAACGCAACTCCCGGACCT+GGG | + | chr3_1:8408506-8408525 | Msa0347400:CDS | 65.0% | |
| GGAAAACCGGTCCCAGGTCC+GGG | - | chr3_1:8408520-8408539 | None:intergenic | 65.0% | |
| CCAGGTGGAAAACCGGTCCC+AGG | - | chr3_1:8408526-8408545 | None:intergenic | 65.0% | |
| !! | CCTGGGACCGGTTTTCCACC+TGG | + | chr3_1:8408523-8408542 | Msa0347400:CDS | 65.0% |
| !! | GGAGGAGCACCACAGGATGG+TGG | + | chr3_1:8409319-8409338 | Msa0347400:CDS | 65.0% |
| ! | GCCCTCTCCTCCTTCTAGGG+AGG | + | chr3_1:8411404-8411423 | Msa0347400:intron | 65.0% |
| GCCCTCCCTAGAAGGAGGAG+AGG | - | chr3_1:8411409-8411428 | None:intergenic | 65.0% | |
| GCGCAAGCTCTCCTTGAGGC+TGG | + | chr3_1:8411544-8411563 | Msa0347400:CDS | 65.0% | |
| GCAACTCCCGGACCTGGGAC+CGG | + | chr3_1:8408511-8408530 | Msa0347400:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 8407393 | 8412226 | 8407393 | ID=Msa0347400;Name=Msa0347400 |
| chr3_1 | mRNA | 8407393 | 8412226 | 8407393 | ID=Msa0347400-mRNA-1;Parent=Msa0347400;Name=Msa0347400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=152|0.87|0.88|1|0.87|0.88|9|317|349 |
| chr3_1 | exon | 8407393 | 8407532 | 8407393 | ID=Msa0347400-mRNA-1:exon:2429;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8407685 | 8407730 | 8407685 | ID=Msa0347400-mRNA-1:exon:2430;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8408455 | 8408600 | 8408455 | ID=Msa0347400-mRNA-1:exon:2431;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8409232 | 8409447 | 8409232 | ID=Msa0347400-mRNA-1:exon:2432;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8409529 | 8409677 | 8409529 | ID=Msa0347400-mRNA-1:exon:2433;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8409789 | 8409960 | 8409789 | ID=Msa0347400-mRNA-1:exon:2434;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8410933 | 8411025 | 8410933 | ID=Msa0347400-mRNA-1:exon:2435;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8411535 | 8411674 | 8411535 | ID=Msa0347400-mRNA-1:exon:2436;Parent=Msa0347400-mRNA-1 |
| chr3_1 | exon | 8411810 | 8412226 | 8411810 | ID=Msa0347400-mRNA-1:exon:2437;Parent=Msa0347400-mRNA-1 |
| chr3_1 | five_prime_UTR | 8407393 | 8407532 | 8407393 | ID=Msa0347400-mRNA-1:five_prime_utr;Parent=Msa0347400-mRNA-1 |
| chr3_1 | five_prime_UTR | 8407685 | 8407696 | 8407685 | ID=Msa0347400-mRNA-1:five_prime_utr;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8407697 | 8407730 | 8407697 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8408455 | 8408600 | 8408455 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8409232 | 8409447 | 8409232 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8409529 | 8409677 | 8409529 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8409789 | 8409960 | 8409789 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8410933 | 8411025 | 8410933 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8411535 | 8411674 | 8411535 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | CDS | 8411810 | 8411909 | 8411810 | ID=Msa0347400-mRNA-1:cds;Parent=Msa0347400-mRNA-1 |
| chr3_1 | three_prime_UTR | 8411910 | 8412226 | 8411910 | ID=Msa0347400-mRNA-1:three_prime_utr;Parent=Msa0347400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
