Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489460 | XP_013458822.1 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489460 | sp|Q29Q26|AKR2B_ARATH | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.19e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489460 | A0A072USU9 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0394010 | Msa0489460 | 0.956568 | 2.171660e-114 | -8.615850e-47 |
| Msa0441840 | Msa0489460 | 0.961255 | 1.720489e-119 | -8.615850e-47 |
| Msa0347400 | Msa0489460 | 0.880661 | 4.565837e-70 | -8.615850e-47 |
| Msa0489460 | Msa1157680 | 0.811169 | 8.007163e-51 | -8.615850e-47 |
| Msa0489460 | Msa1355490 | 0.806808 | 6.871413e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489460 | MtrunA17_Chr3g0079591 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Msa0489460 | MtrunA17_Chr3g0142201 | 57.676 | 241 | 93 | 5 | 1 | 239 | 1 | 234 | 3.36e-85 | 263 |
| Msa0489460 | MtrunA17_Chr1g0176011 | 57.955 | 176 | 56 | 4 | 50 | 225 | 18 | 175 | 5.59e-54 | 182 |
| Msa0489460 | MtrunA17_Chr6g0463271 | 44.856 | 243 | 102 | 6 | 1 | 239 | 1 | 215 | 6.61e-52 | 176 |
| Msa0489460 | MtrunA17_Chr1g0175931 | 56.818 | 176 | 58 | 4 | 50 | 225 | 18 | 175 | 3.68e-51 | 174 |
| Msa0489460 | MtrunA17_Chr1g0175951 | 59.211 | 152 | 60 | 2 | 74 | 225 | 2 | 151 | 8.83e-50 | 170 |
| Msa0489460 | MtrunA17_Chr3g0142931 | 47.980 | 198 | 75 | 5 | 42 | 239 | 39 | 208 | 1.13e-48 | 167 |
| Msa0489460 | MtrunA17_Chr3g0144061 | 60.577 | 104 | 35 | 1 | 136 | 239 | 1 | 98 | 3.55e-35 | 124 |
| Msa0489460 | MtrunA17_Chr1g0175991 | 51.079 | 139 | 48 | 5 | 50 | 188 | 34 | 152 | 1.04e-29 | 115 |
| Msa0489460 | MtrunA17_Chr4g0065471 | 42.478 | 113 | 43 | 3 | 178 | 284 | 26 | 122 | 4.52e-15 | 74.3 |
| Msa0489460 | MtrunA17_Chr5g0418551 | 36.879 | 141 | 82 | 1 | 203 | 343 | 75 | 208 | 1.89e-14 | 72.4 |
| Msa0489460 | MtrunA17_Chr1g0187681 | 33.588 | 131 | 84 | 2 | 222 | 349 | 4 | 134 | 2.76e-13 | 70.5 |
| Msa0489460 | MtrunA17_Chr6g0461061 | 37.000 | 100 | 62 | 1 | 245 | 343 | 230 | 329 | 3.26e-12 | 67.4 |
| Msa0489460 | MtrunA17_Chr1g0180301 | 37.705 | 122 | 66 | 4 | 231 | 343 | 43 | 163 | 3.39e-12 | 65.1 |
| Msa0489460 | MtrunA17_Chr4g0038681 | 39.316 | 117 | 68 | 2 | 219 | 332 | 116 | 232 | 2.12e-11 | 64.7 |
| Msa0489460 | MtrunA17_Chr1g0196261 | 37.113 | 97 | 60 | 1 | 233 | 328 | 348 | 444 | 5.40e-11 | 63.5 |
| Msa0489460 | MtrunA17_Chr3g0082141 | 30.128 | 156 | 86 | 3 | 180 | 331 | 665 | 801 | 8.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0489460 | AT2G17390.1 | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.26e-153 | 434 |
| Msa0489460 | AT4G35450.2 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0489460 | AT4G35450.3 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0489460 | AT4G35450.1 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0489460 | AT4G35450.5 | 63.510 | 359 | 112 | 7 | 1 | 349 | 1 | 350 | 2.96e-146 | 417 |
| Msa0489460 | AT4G35450.4 | 67.961 | 309 | 93 | 3 | 41 | 349 | 2 | 304 | 8.30e-146 | 414 |
| Msa0489460 | AT2G03430.1 | 39.000 | 100 | 61 | 0 | 229 | 328 | 87 | 186 | 3.54e-14 | 71.6 |
| Msa0489460 | AT3G23280.1 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.10e-13 | 72.4 |
| Msa0489460 | AT3G23280.2 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.20e-13 | 72.0 |
| Msa0489460 | AT5G53470.1 | 34.615 | 104 | 68 | 0 | 229 | 332 | 222 | 325 | 2.79e-13 | 70.5 |
| Msa0489460 | AT5G12320.1 | 35.354 | 99 | 64 | 0 | 233 | 331 | 19 | 117 | 5.31e-12 | 63.5 |
| Msa0489460 | AT4G27780.1 | 33.654 | 104 | 69 | 0 | 229 | 332 | 237 | 340 | 8.63e-12 | 65.9 |
| Msa0489460 | AT2G47450.1 | 40.351 | 114 | 66 | 2 | 220 | 332 | 123 | 235 | 1.67e-11 | 65.1 |
Find 101 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGCTGAACTTTAT+TGG | 0.122980 | 3_4:-9818196 | None:intergenic |
| TCTTCTTCTTCTTCAGATTC+AGG | 0.165026 | 3_4:+9816134 | Msa0489460:five_prime_UTR |
| GCTGCTTCTTCTGAAAATTC+TGG | 0.165755 | 3_4:+9818486 | Msa0489460:CDS |
| TTGCAGTACTCTGCAAAATA+TGG | 0.286124 | 3_4:+9820428 | Msa0489460:intron |
| CCCACATCTTCTGTTTCATC+TGG | 0.296289 | 3_4:-9818510 | None:intergenic |
| TTTAATTTCGCAACATCTAT+AGG | 0.306488 | 3_4:-9820462 | None:intergenic |
| TCAGCCATGGTCATAAAATT+AGG | 0.317600 | 3_4:-9818024 | None:intergenic |
| CATGCATGCCATGCAATTAC+AGG | 0.325924 | 3_4:-9820527 | None:intergenic |
| CTTCATTATGCAGCAGGTTA+TGG | 0.341988 | 3_4:+9820231 | Msa0489460:CDS |
| TCTCAAAAGGATATTCCTTC+TGG | 0.350480 | 3_4:+9816331 | Msa0489460:CDS |
| GTTGTCGCAAAATTCTCTTT+TGG | 0.359269 | 3_4:+9820779 | Msa0489460:three_prime_UTR |
| TATGACCATGGCTGAGCGCC+TGG | 0.371236 | 3_4:+9818032 | Msa0489460:CDS |
| TGGAAAACCGGTCCCAGGTC+CGG | 0.375249 | 3_4:-9817142 | None:intergenic |
| AGAGAGAATGGCACGCATAA+AGG | 0.386835 | 3_4:+9818215 | Msa0489460:CDS |
| CTCATTGCTGAGAAATCAAA+AGG | 0.392741 | 3_4:-9817189 | None:intergenic |
| CTGCTTCTTCTGAAAATTCT+GGG | 0.395319 | 3_4:+9818487 | Msa0489460:CDS |
| TCAGCCAATTCCTTGATACT+TGG | 0.405646 | 3_4:-9817859 | None:intergenic |
| GGATCCAAGTATCAAGGAAT+TGG | 0.418761 | 3_4:+9817855 | Msa0489460:intron |
| TACTGCTGATTATCAAAGTT+AGG | 0.425274 | 3_4:-9817970 | None:intergenic |
| CTGAACTTTATTGGACGGAT+TGG | 0.428989 | 3_4:-9818187 | None:intergenic |
| ACCAGTCCCAGGTGGAAAAC+CGG | 0.440893 | 3_4:-9817154 | None:intergenic |
| TTGAAAGCTGCGCTAGCCTC+TGG | 0.443610 | 3_4:+9819560 | Msa0489460:CDS |
| AGGTCCGGGAGTTGCGTTCG+AGG | 0.459739 | 3_4:-9817127 | None:intergenic |
| GCGCAAGCTCTCCTTGAGGC+TGG | 0.462394 | 3_4:+9820168 | Msa0489460:CDS |
| GGAAAACCGGTCCCAGGTCC+GGG | 0.463114 | 3_4:-9817141 | None:intergenic |
| TCGAACGCAACTCCCGGACC+TGG | 0.465039 | 3_4:+9817129 | Msa0489460:CDS |
| ATGGGCATTCCTCCAACCTC+TGG | 0.465285 | 3_4:+9818456 | Msa0489460:CDS |
| TCTAAAATATGTTTCAAAGA+TGG | 0.467672 | 3_4:-9818243 | None:intergenic |
| TGGAGCAAAAGTAGATGCTT+TGG | 0.468103 | 3_4:+9820188 | Msa0489460:CDS |
| TATCTAGGTTTCTTCGCTCA+TGG | 0.468456 | 3_4:+9816300 | Msa0489460:intron |
| GAAGAAGTTGGGACTAGCCA+TGG | 0.471435 | 3_4:+9818437 | Msa0489460:CDS |
| GAAGAAGAAGAAGAGCGATA+AGG | 0.472336 | 3_4:-9816113 | None:intergenic |
| GTATCTTTCATCCATGCAAC+AGG | 0.477789 | 3_4:+9817990 | Msa0489460:CDS |
| AAAAGAAAATGGAAACTTGA+GGG | 0.478831 | 3_4:+9820571 | Msa0489460:three_prime_UTR |
| GAGAAATCAAAAGGGTTGGC+TGG | 0.479871 | 3_4:-9817180 | None:intergenic |
| TATCAAGATTAGCGCCGTAA+TGG | 0.480898 | 3_4:+9820719 | Msa0489460:three_prime_UTR |
| CATGGCTTCCAATTCTCAAA+AGG | 0.488909 | 3_4:+9816318 | Msa0489460:exon |
| AAACATCTTTCTCAAGAAGC+TGG | 0.492614 | 3_4:-9820503 | None:intergenic |
| GCTAGCCTCTGGTGCTGATA+AGG | 0.495452 | 3_4:+9819571 | Msa0489460:CDS |
| TAATGAGATCCAGATCTGTT+GGG | 0.509322 | 3_4:+9820822 | Msa0489460:three_prime_UTR |
| ACAGCTCTTCATTATGCAGC+AGG | 0.511661 | 3_4:+9820225 | Msa0489460:CDS |
| TCAACGAAATGAAACCATTA+CGG | 0.513851 | 3_4:-9820733 | None:intergenic |
| ACTGCTGATTATCAAAGTTA+GGG | 0.515114 | 3_4:-9817969 | None:intergenic |
| AGTTCAGCTTGAAGAGAGAA+TGG | 0.515247 | 3_4:+9818203 | Msa0489460:CDS |
| ATAATGAGATCCAGATCTGT+TGG | 0.519485 | 3_4:+9820821 | Msa0489460:three_prime_UTR |
| ATTATGCAGCAGGTTATGGC+AGG | 0.522371 | 3_4:+9820235 | Msa0489460:CDS |
| TTCATCCATGCAACAGGTCA+TGG | 0.523490 | 3_4:+9817996 | Msa0489460:CDS |
| GCAGCTGCATCTCCAGAGGT+TGG | 0.525843 | 3_4:-9818468 | None:intergenic |
| GCAACTCCCGGACCTGGGAC+CGG | 0.525973 | 3_4:+9817135 | Msa0489460:CDS |
| ATTGGTAAAACTTTCAAGCA+TGG | 0.527566 | 3_4:-9818169 | None:intergenic |
| GTCACAGGATCCAAGTATCA+AGG | 0.533298 | 3_4:+9817849 | Msa0489460:intron |
| TTTGATTTCTCAGCAATGAG+TGG | 0.534737 | 3_4:+9817192 | Msa0489460:CDS |
| TGCTGAGAAATCAAAAGGGT+TGG | 0.535067 | 3_4:-9817184 | None:intergenic |
| CCAGGTGGAAAACCGGTCCC+AGG | 0.535701 | 3_4:-9817147 | None:intergenic |
| GTGGCCTTGCTCCTTGAAAA+CGG | 0.539036 | 3_4:+9820267 | Msa0489460:CDS |
| CCTGGGTAATGCATTGATGC+AGG | 0.543657 | 3_4:+9818050 | Msa0489460:CDS |
| CGAACGCAACTCCCGGACCT+GGG | 0.544955 | 3_4:+9817130 | Msa0489460:CDS |
| TCAAGCTGAACTTTATTGGA+CGG | 0.545387 | 3_4:-9818192 | None:intergenic |
| AGATCCATCATTCAATCAGA+TGG | 0.548584 | 3_4:+9817894 | Msa0489460:CDS |
| CAGCTTCAGAAAACTTTGCA+TGG | 0.549622 | 3_4:+9817922 | Msa0489460:CDS |
| ACATCCTCGAACGCAACTCC+CGG | 0.550672 | 3_4:+9817123 | Msa0489460:CDS |
| ATGACCATGGCTGAGCGCCT+GGG | 0.553159 | 3_4:+9818033 | Msa0489460:CDS |
| GCCAGATGAAACAGAAGATG+TGG | 0.557340 | 3_4:+9818509 | Msa0489460:CDS |
| TTTGCATGGAGGAGCACCAC+AGG | 0.559317 | 3_4:+9817936 | Msa0489460:CDS |
| TAATTGCATGGCATGCATGA+TGG | 0.565033 | 3_4:+9820531 | Msa0489460:exon |
| AGTACTCTGCAAAATATGGA+TGG | 0.567263 | 3_4:+9820432 | Msa0489460:intron |
| ATTTGCCATGACCTGTTGCA+TGG | 0.569040 | 3_4:-9818001 | None:intergenic |
| GTTCATCATACTGCTAGTGT+TGG | 0.576940 | 3_4:+9818552 | Msa0489460:CDS |
| AAGAAGTTGGGACTAGCCAT+GGG | 0.580948 | 3_4:+9818438 | Msa0489460:CDS |
| GCTGCATCTCCAGAGGTTGG+AGG | 0.582935 | 3_4:-9818465 | None:intergenic |
| CAAGCATGGAAGACATCGAT+GGG | 0.587730 | 3_4:-9818155 | None:intergenic |
| ATAAACCTCATCATTACAGC+AGG | 0.589232 | 3_4:-9818285 | None:intergenic |
| TCAGCCATCTGATTGAATGA+TGG | 0.589706 | 3_4:-9817898 | None:intergenic |
| TAAGGATGAAGAAGATTCAG+AGG | 0.591403 | 3_4:+9819589 | Msa0489460:CDS |
| TTGGCTGGAAAACCAGTCCC+AGG | 0.592571 | 3_4:-9817165 | None:intergenic |
| TCAAGCATGGAAGACATCGA+TGG | 0.593586 | 3_4:-9818156 | None:intergenic |
| GTACTCTGCAAAATATGGAT+GGG | 0.595986 | 3_4:+9820433 | Msa0489460:intron |
| AGAAGCAGCTGCATCTCCAG+AGG | 0.600724 | 3_4:-9818472 | None:intergenic |
| TGCAGCAGGTTATGGCAGGA+AGG | 0.601460 | 3_4:+9820239 | Msa0489460:CDS |
| AAGGATGAAGAAGATTCAGA+GGG | 0.609631 | 3_4:+9819590 | Msa0489460:CDS |
| ATTACCCAGGCGCTCAGCCA+TGG | 0.617162 | 3_4:-9818037 | None:intergenic |
| TTCATCCTTATCAGCACCAG+AGG | 0.620315 | 3_4:-9819576 | None:intergenic |
| TGCTAGTGTTGGTGACATTG+AGG | 0.628525 | 3_4:+9818563 | Msa0489460:CDS |
| TCATTGCTGAGAAATCAAAA+GGG | 0.629369 | 3_4:-9817188 | None:intergenic |
| AAAGAAAATGGAAACTTGAG+GGG | 0.632524 | 3_4:+9820572 | Msa0489460:three_prime_UTR |
| CATGGAGGAGCACCACAGGA+TGG | 0.634179 | 3_4:+9817940 | Msa0489460:CDS |
| AGACGAGAAAGCTGGTTCAG+CGG | 0.641290 | 3_4:+9817077 | Msa0489460:intron |
| TAGATACTGGAATGATGAGG+AGG | 0.645865 | 3_4:+9818410 | Msa0489460:intron |
| CCTGCATCAATGCATTACCC+AGG | 0.649558 | 3_4:-9818050 | None:intergenic |
| CCAGATGAAACAGAAGATGT+GGG | 0.652505 | 3_4:+9818510 | Msa0489460:CDS |
| AGAGGTTGGAGGAATGCCCA+TGG | 0.656046 | 3_4:-9818454 | None:intergenic |
| ATCTAGATACTGGAATGATG+AGG | 0.659169 | 3_4:+9818407 | Msa0489460:intron |
| GGAGGAGCACCACAGGATGG+TGG | 0.665535 | 3_4:+9817943 | Msa0489460:CDS |
| CATCTTTCTCAAGAAGCTGG+AGG | 0.671030 | 3_4:-9820500 | None:intergenic |
| TTATGGCAGGAAGGAATGTG+TGG | 0.674267 | 3_4:+9820248 | Msa0489460:CDS |
| TTAGGGAGACCACCATCCTG+TGG | 0.684695 | 3_4:-9817952 | None:intergenic |
| GCTGGAAAACCAGTCCCAGG+TGG | 0.687890 | 3_4:-9817162 | None:intergenic |
| GTGTGCGCAAGCTCTCCTTG+AGG | 0.688818 | 3_4:+9820164 | Msa0489460:CDS |
| GCGGTCCTGCTGTAATGATG+AGG | 0.692207 | 3_4:+9818280 | Msa0489460:CDS |
| CTTCAGAAAACTTTGCATGG+AGG | 0.695368 | 3_4:+9817925 | Msa0489460:CDS |
| TTAGATGAGATAGAGAATGG+CGG | 0.730427 | 3_4:+9818261 | Msa0489460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTCTTTTTTAAAAA+TGG | - | chr3_4:9818314-9818333 | None:intergenic | 10.0% |
| !!! | AAAAAGAAAATCATATTTTA+TGG | + | chr3_4:9818320-9818339 | Msa0489460:intron | 10.0% |
| !!! | GTTATAAATAAGAAATTTTA+TGG | - | chr3_4:9820667-9820686 | None:intergenic | 10.0% |
| !! | AGCAAAATTAAGAATAATTA+AGG | - | chr3_4:9816182-9816201 | None:intergenic | 15.0% |
| !!! | AGTTTGATTTTTTTTTTTTG+TGG | + | chr3_4:9816507-9816526 | Msa0489460:intron | 15.0% |
| !! | ATCTTTGTAATAATCATTTA+AGG | + | chr3_4:9817623-9817642 | Msa0489460:intron | 15.0% |
| !!! | TAGTTAAATAGTTTTATACA+TGG | - | chr3_4:9817797-9817816 | None:intergenic | 15.0% |
| !!! | AAAATCATATTTTATGGTTT+TGG | + | chr3_4:9818326-9818345 | Msa0489460:intron | 15.0% |
| !! | ATAAATAAATAATACAATGG+TGG | - | chr3_4:9819484-9819503 | None:intergenic | 15.0% |
| !! | CCATTGTATTATTTATTTAT+CGG | + | chr3_4:9819484-9819503 | Msa0489460:intron | 15.0% |
| !! | AAAAACGAATAACAATTTCT+AGG | - | chr3_4:9816274-9816293 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTTGTTCACTAT+CGG | + | chr3_4:9816405-9816424 | Msa0489460:intron | 20.0% |
| !! | TGTACAAAAAAAACATAATC+AGG | - | chr3_4:9816465-9816484 | None:intergenic | 20.0% |
| !! | ACATAATTGAATATAATCAC+AGG | + | chr3_4:9816604-9816623 | Msa0489460:intron | 20.0% |
| !! | CATATTAGTAAAAATCACAT+AGG | - | chr3_4:9816824-9816843 | None:intergenic | 20.0% |
| !!! | CTATGTGATTTTTACTAATA+TGG | + | chr3_4:9816822-9816841 | Msa0489460:intron | 20.0% |
| !! | TATTTGTATAGACAATACAA+AGG | + | chr3_4:9816855-9816874 | Msa0489460:intron | 20.0% |
| !! | ATTTGTATAGACAATACAAA+GGG | + | chr3_4:9816856-9816875 | Msa0489460:intron | 20.0% |
| !!! | CAAAATTAGTAAAGTGTTAT+TGG | - | chr3_4:9816954-9816973 | None:intergenic | 20.0% |
| !! | TACATCAATAACAATTAACA+GGG | - | chr3_4:9817300-9817319 | None:intergenic | 20.0% |
| !! | TTACATCAATAACAATTAAC+AGG | - | chr3_4:9817301-9817320 | None:intergenic | 20.0% |
| !! | AATACTATTATGATCCAAAT+TGG | - | chr3_4:9817588-9817607 | None:intergenic | 20.0% |
| !!! | TTTATTGAAGAGTTTAAGTT+AGG | + | chr3_4:9817663-9817682 | Msa0489460:intron | 20.0% |
| !! | TATAAAACTATTTAACTACG+TGG | + | chr3_4:9817799-9817818 | Msa0489460:intron | 20.0% |
| !! | ATACATTCTTATCTAACAAT+CGG | - | chr3_4:9818117-9818136 | None:intergenic | 20.0% |
| !!! | TCTAAAATATGTTTCAAAGA+TGG | - | chr3_4:9818246-9818265 | None:intergenic | 20.0% |
| !! | ATTTACATAACAAATTATGG+TGG | - | chr3_4:9818357-9818376 | None:intergenic | 20.0% |
| !! | CCAATTTACATAACAAATTA+TGG | - | chr3_4:9818360-9818379 | None:intergenic | 20.0% |
| !!! | CCATAATTTGTTATGTAAAT+TGG | + | chr3_4:9818357-9818376 | Msa0489460:intron | 20.0% |
| !!! | ATGAAACTTTTTTGAATAGA+AGG | + | chr3_4:9818667-9818686 | Msa0489460:intron | 20.0% |
| !! | GAATTTAAAGAGATGAAAAT+AGG | + | chr3_4:9818719-9818738 | Msa0489460:intron | 20.0% |
| !!! | TTGTTTAAGGTAATATCAAA+AGG | + | chr3_4:9818798-9818817 | Msa0489460:intron | 20.0% |
| !!! | AAACTGATATATTTTTCGAA+AGG | - | chr3_4:9818899-9818918 | None:intergenic | 20.0% |
| !!! | AGAATTTTATTTTTCTCAAG+AGG | - | chr3_4:9818972-9818991 | None:intergenic | 20.0% |
| !! | ATTACTATAATACTTATGCA+TGG | - | chr3_4:9819051-9819070 | None:intergenic | 20.0% |
| !! | TGTTTATTTGTTTAATTCGA+AGG | + | chr3_4:9819368-9819387 | Msa0489460:intron | 20.0% |
| !! | CCGATAAATAAATAATACAA+TGG | - | chr3_4:9819487-9819506 | None:intergenic | 20.0% |
| !! | AGTATTTACACTAATCAATT+AGG | + | chr3_4:9819535-9819554 | Msa0489460:intron | 20.0% |
| !! | GTATTTACACTAATCAATTA+GGG | + | chr3_4:9819536-9819555 | Msa0489460:intron | 20.0% |
| !!! | TACATAAATTCTAAGAAACA+AGG | - | chr3_4:9819702-9819721 | None:intergenic | 20.0% |
| !!! | AGAATTTATGTATTTGTTGT+TGG | + | chr3_4:9819710-9819729 | Msa0489460:intron | 20.0% |
| !!! | TTCGTTTTTTTCAGATATCT+AGG | + | chr3_4:9816285-9816304 | Msa0489460:intron | 25.0% |
| ! | AATTATAGATAGATACCAGA+AGG | - | chr3_4:9816349-9816368 | None:intergenic | 25.0% |
| ! | TTACCTATAAAACACAAACA+TGG | + | chr3_4:9816535-9816554 | Msa0489460:intron | 25.0% |
| !!! | ATGTGCTTTAATTTTACTCT+TGG | + | chr3_4:9817044-9817063 | Msa0489460:intron | 25.0% |
| !!! | AAATTCTGAACTTTTTTCAG+AGG | + | chr3_4:9817453-9817472 | Msa0489460:intron | 25.0% |
| ! | AAAATGAAAAGAGAAAGAGT+CGG | - | chr3_4:9817729-9817748 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTCACTCACTA+GGG | + | chr3_4:9817739-9817758 | Msa0489460:intron | 25.0% |
| ! | TTAAAATGTCAATATGTCAC+AGG | + | chr3_4:9817834-9817853 | Msa0489460:intron | 25.0% |
| !! | AAATCCTAATTTTATGACCA+TGG | + | chr3_4:9818020-9818039 | Msa0489460:CDS | 25.0% |
| !! | ATTTTAGATGAGATAGAGAA+TGG | + | chr3_4:9818258-9818277 | Msa0489460:CDS | 25.0% |
| !! | AATTCTTTTCATCTAGATAC+TGG | + | chr3_4:9818397-9818416 | Msa0489460:intron | 25.0% |
| ! | AAAGCTTATAGAATGATAGT+TGG | - | chr3_4:9818856-9818875 | None:intergenic | 25.0% |
| !! | ACTATCATTCTATAAGCTTT+TGG | + | chr3_4:9818856-9818875 | Msa0489460:intron | 25.0% |
| !! | CTATCATTCTATAAGCTTTT+GGG | + | chr3_4:9818857-9818876 | Msa0489460:intron | 25.0% |
| !! | AACGTTGTGTTCTAATTTTA+GGG | - | chr3_4:9819133-9819152 | None:intergenic | 25.0% |
| !! | TAACGTTGTGTTCTAATTTT+AGG | - | chr3_4:9819134-9819153 | None:intergenic | 25.0% |
| !!! | CCAGTAAAACACAATTTTTT+GGG | + | chr3_4:9819264-9819283 | Msa0489460:intron | 25.0% |
| ! | TTAATCCATACATTGGAATT+TGG | - | chr3_4:9820116-9820135 | None:intergenic | 25.0% |
| !!! | GCATATTTTAATCCATACAT+TGG | - | chr3_4:9820123-9820142 | None:intergenic | 25.0% |
| !! | TTTAATTTCGCAACATCTAT+AGG | - | chr3_4:9820465-9820484 | None:intergenic | 25.0% |
| !! | TCAAGTTTCCATTTTCTTTT+TGG | - | chr3_4:9820571-9820590 | None:intergenic | 25.0% |
| ! | AAAAAGAAAATGGAAACTTG+AGG | + | chr3_4:9820570-9820589 | Msa0489460:three_prime_UTR | 25.0% |
| ! | AAAAGAAAATGGAAACTTGA+GGG | + | chr3_4:9820571-9820590 | Msa0489460:three_prime_UTR | 25.0% |
| !! | GAAAAAACAAAAGCATGATA+TGG | + | chr3_4:9820594-9820613 | Msa0489460:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTAACACAACGAT+GGG | - | chr3_4:9820636-9820655 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTTAACACAACGA+TGG | - | chr3_4:9820637-9820656 | None:intergenic | 25.0% |
| !! | AGGAATATCCTTTTGAGAAT+TGG | - | chr3_4:9816329-9816348 | None:intergenic | 30.0% |
| ! | TGTCCATGTTTGTGTTTTAT+AGG | - | chr3_4:9816541-9816560 | None:intergenic | 30.0% |
| ! | GAAGTGTGTTATTGTTGTAT+TGG | + | chr3_4:9816681-9816700 | Msa0489460:intron | 30.0% |
| AACACACTTATCATGATATC+TGG | - | chr3_4:9816716-9816735 | None:intergenic | 30.0% | |
| ! | TAAGTGTGTTATTGTCATGT+TGG | + | chr3_4:9816726-9816745 | Msa0489460:intron | 30.0% |
| TAGACACTTATCCTTTACTT+AGG | + | chr3_4:9816887-9816906 | Msa0489460:intron | 30.0% | |
| AGACACTTATCCTTTACTTA+GGG | + | chr3_4:9816888-9816907 | Msa0489460:intron | 30.0% | |
| !! | CTAATTTTGCTGTAGTCTTT+TGG | + | chr3_4:9816965-9816984 | Msa0489460:intron | 30.0% |
| !!! | ATTTTTTTAGACGAGAAAGC+TGG | + | chr3_4:9817069-9817088 | Msa0489460:intron | 30.0% |
| TCATTGCTGAGAAATCAAAA+GGG | - | chr3_4:9817191-9817210 | None:intergenic | 30.0% | |
| ! | TGCTATTTGCATTATATGTG+TGG | + | chr3_4:9817248-9817267 | Msa0489460:intron | 30.0% |
| !! | ACATGCATGTTTTTATAAGC+TGG | + | chr3_4:9817350-9817369 | Msa0489460:intron | 30.0% |
| !!! | TTCTGGGAATAGGTTTTATT+AGG | + | chr3_4:9817427-9817446 | Msa0489460:intron | 30.0% |
| !!! | TCTGGGAATAGGTTTTATTA+GGG | + | chr3_4:9817428-9817447 | Msa0489460:intron | 30.0% |
| TAAGTTAGGTGAAGAATTTG+AGG | + | chr3_4:9817677-9817696 | Msa0489460:intron | 30.0% | |
| AAATGAAAAGAGAAAGAGTC+GGG | - | chr3_4:9817728-9817747 | None:intergenic | 30.0% | |
| !! | CTTTTCATTTTTCACTCACT+AGG | + | chr3_4:9817738-9817757 | Msa0489460:intron | 30.0% |
| ! | ACTGCTGATTATCAAAGTTA+GGG | - | chr3_4:9817972-9817991 | None:intergenic | 30.0% |
| ! | TACTGCTGATTATCAAAGTT+AGG | - | chr3_4:9817973-9817992 | None:intergenic | 30.0% |
| ATTGGTAAAACTTTCAAGCA+TGG | - | chr3_4:9818172-9818191 | None:intergenic | 30.0% | |
| !!! | CATATTGACTTTTCGCAATA+TGG | + | chr3_4:9818591-9818610 | Msa0489460:intron | 30.0% |
| ACAAATTTGTAGTTGTGCTT+GGG | + | chr3_4:9818643-9818662 | Msa0489460:intron | 30.0% | |
| GTAATTAATTGTCTCACAGT+TGG | + | chr3_4:9818750-9818769 | Msa0489460:intron | 30.0% | |
| GTTTCTGCATGAATTGTTTA+AGG | + | chr3_4:9818785-9818804 | Msa0489460:intron | 30.0% | |
| ! | ATGGAATCATTTTCAAACCA+AGG | - | chr3_4:9819032-9819051 | None:intergenic | 30.0% |
| TTATAGTAATGTAGTCCACT+AGG | + | chr3_4:9819061-9819080 | Msa0489460:intron | 30.0% | |
| AGTTTATTGAAGCAAGTTCT+AGG | + | chr3_4:9819157-9819176 | Msa0489460:intron | 30.0% | |
| GGAATATAAGTCAATTGAGT+AGG | - | chr3_4:9819204-9819223 | None:intergenic | 30.0% | |
| !!! | GCCAGTAAAACACAATTTTT+TGG | + | chr3_4:9819263-9819282 | Msa0489460:intron | 30.0% |
| ! | CCCAAAAAATTGTGTTTTAC+TGG | - | chr3_4:9819267-9819286 | None:intergenic | 30.0% |
| ATTGCTCCTTTCTTTAGTAT+TGG | + | chr3_4:9819413-9819432 | Msa0489460:intron | 30.0% | |
| AGCAAACCAATACTAAAGAA+AGG | - | chr3_4:9819422-9819441 | None:intergenic | 30.0% | |
| ! | TTACATTTTGCTTGTGGTTA+CGG | + | chr3_4:9819623-9819642 | Msa0489460:CDS | 30.0% |
| ! | AGTACTTTCATTTAGAACCA+TGG | + | chr3_4:9819735-9819754 | Msa0489460:intron | 30.0% |
| GAAGAAAATCACAATGCTAT+AGG | - | chr3_4:9819813-9819832 | None:intergenic | 30.0% | |
| TAGAATATTAGATTCTAGCC+TGG | + | chr3_4:9819966-9819985 | Msa0489460:intron | 30.0% | |
| !! | GAATTTTGACGATTCTAGTT+TGG | + | chr3_4:9820085-9820104 | Msa0489460:intron | 30.0% |
| TTCTTCCAAATTCCAATGTA+TGG | + | chr3_4:9820108-9820127 | Msa0489460:intron | 30.0% | |
| AACAAGATGTAGGAAGAAAT+TGG | - | chr3_4:9820352-9820371 | None:intergenic | 30.0% | |
| !! | TTCCATTTTCTTTTTGGTGA+CGG | - | chr3_4:9820565-9820584 | None:intergenic | 30.0% |
| AAAGAAAATGGAAACTTGAG+GGG | + | chr3_4:9820572-9820591 | Msa0489460:three_prime_UTR | 30.0% | |
| TCAACGAAATGAAACCATTA+CGG | - | chr3_4:9820736-9820755 | None:intergenic | 30.0% | |
| !!! | GAGTGTTTTTGGTTTAAGAG+AGG | - | chr3_4:9816074-9816093 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCAGATTC+AGG | + | chr3_4:9816134-9816153 | Msa0489460:five_prime_UTR | 35.0% | |
| TCTCAAAAGGATATTCCTTC+TGG | + | chr3_4:9816331-9816350 | Msa0489460:CDS | 35.0% | |
| !!! | TATTGTCGTCTTGGTTTTGT+TGG | + | chr3_4:9816630-9816649 | Msa0489460:intron | 35.0% |
| GTAATATATGTAACACCGAC+AGG | - | chr3_4:9816760-9816779 | None:intergenic | 35.0% | |
| AAAATCGCATAGGAAGATAC+TGG | - | chr3_4:9816789-9816808 | None:intergenic | 35.0% | |
| GACACTAGTAAAAATCGCAT+AGG | - | chr3_4:9816799-9816818 | None:intergenic | 35.0% | |
| CTCATTGCTGAGAAATCAAA+AGG | - | chr3_4:9817192-9817211 | None:intergenic | 35.0% | |
| ! | TTTGATTTCTCAGCAATGAG+TGG | + | chr3_4:9817192-9817211 | Msa0489460:CDS | 35.0% |
| TGTCATCGTACAATGATTCT+GGG | + | chr3_4:9817411-9817430 | Msa0489460:intron | 35.0% | |
| AGCTTTCCATATCATGATAG+TGG | + | chr3_4:9817540-9817559 | Msa0489460:intron | 35.0% | |
| CTGATTCCACTATCATGATA+TGG | - | chr3_4:9817549-9817568 | None:intergenic | 35.0% | |
| AAATTGGCAGCAACTACAAA+AGG | - | chr3_4:9817572-9817591 | None:intergenic | 35.0% | |
| ! | TTTTGTAGTTGCTGCCAATT+TGG | + | chr3_4:9817571-9817590 | Msa0489460:intron | 35.0% |
| AGATCCATCATTCAATCAGA+TGG | + | chr3_4:9817894-9817913 | Msa0489460:CDS | 35.0% | |
| TCAGCCATGGTCATAAAATT+AGG | - | chr3_4:9818027-9818046 | None:intergenic | 35.0% | |
| ATGTATATGCTGTCTATCAC+AGG | + | chr3_4:9818131-9818150 | Msa0489460:intron | 35.0% | |
| TCAAGCTGAACTTTATTGGA+CGG | - | chr3_4:9818195-9818214 | None:intergenic | 35.0% | |
| CTCTTCAAGCTGAACTTTAT+TGG | - | chr3_4:9818199-9818218 | None:intergenic | 35.0% | |
| TTAGATGAGATAGAGAATGG+CGG | + | chr3_4:9818261-9818280 | Msa0489460:CDS | 35.0% | |
| ATAAACCTCATCATTACAGC+AGG | - | chr3_4:9818288-9818307 | None:intergenic | 35.0% | |
| ATCTAGATACTGGAATGATG+AGG | + | chr3_4:9818407-9818426 | Msa0489460:intron | 35.0% | |
| ! | CTGCTTCTTCTGAAAATTCT+GGG | + | chr3_4:9818487-9818506 | Msa0489460:CDS | 35.0% |
| GACAAATTTGTAGTTGTGCT+TGG | + | chr3_4:9818642-9818661 | Msa0489460:intron | 35.0% | |
| TGAACTAAACCTAACCACAT+CGG | - | chr3_4:9818695-9818714 | None:intergenic | 35.0% | |
| TTCTATTCCAAACAACTCCT+TGG | + | chr3_4:9819012-9819031 | Msa0489460:intron | 35.0% | |
| TTTCAAACCAAGGAGTTGTT+TGG | - | chr3_4:9819022-9819041 | None:intergenic | 35.0% | |
| !!! | GCGGGTGTTTTATTTCTTTA+AGG | - | chr3_4:9819093-9819112 | None:intergenic | 35.0% |
| ACTTCCCTGAGTAACTTATA+AGG | + | chr3_4:9819228-9819247 | Msa0489460:intron | 35.0% | |
| TCCTCCTTATAAGTTACTCA+GGG | - | chr3_4:9819235-9819254 | None:intergenic | 35.0% | |
| ATCCTCCTTATAAGTTACTC+AGG | - | chr3_4:9819236-9819255 | None:intergenic | 35.0% | |
| TAAGGATGAAGAAGATTCAG+AGG | + | chr3_4:9819589-9819608 | Msa0489460:CDS | 35.0% | |
| AAGGATGAAGAAGATTCAGA+GGG | + | chr3_4:9819590-9819609 | Msa0489460:CDS | 35.0% | |
| ! | ACTGCTTTACATTTTGCTTG+TGG | + | chr3_4:9819617-9819636 | Msa0489460:CDS | 35.0% |
| ! | GCCTGGTTCTTGTATATATA+TGG | + | chr3_4:9819983-9820002 | Msa0489460:intron | 35.0% |
| GCCATATATATACAAGAACC+AGG | - | chr3_4:9819987-9820006 | None:intergenic | 35.0% | |
| ATATGCTCCTGATATATTCC+AGG | + | chr3_4:9820137-9820156 | Msa0489460:intron | 35.0% | |
| ATACCACTACAACAAGATGT+AGG | - | chr3_4:9820362-9820381 | None:intergenic | 35.0% | |
| ! | CATCTTGTTGTAGTGGTATT+TGG | + | chr3_4:9820363-9820382 | Msa0489460:intron | 35.0% |
| TTGCAGTACTCTGCAAAATA+TGG | + | chr3_4:9820428-9820447 | Msa0489460:intron | 35.0% | |
| AGTACTCTGCAAAATATGGA+TGG | + | chr3_4:9820432-9820451 | Msa0489460:intron | 35.0% | |
| GTACTCTGCAAAATATGGAT+GGG | + | chr3_4:9820433-9820452 | Msa0489460:intron | 35.0% | |
| AAACATCTTTCTCAAGAAGC+TGG | - | chr3_4:9820506-9820525 | None:intergenic | 35.0% | |
| ! | GATGTTTTCCTGTAATTGCA+TGG | + | chr3_4:9820519-9820538 | Msa0489460:exon | 35.0% |
| ! | GTTGTCGCAAAATTCTCTTT+TGG | + | chr3_4:9820779-9820798 | Msa0489460:three_prime_UTR | 35.0% |
| ATAATGAGATCCAGATCTGT+TGG | + | chr3_4:9820821-9820840 | Msa0489460:three_prime_UTR | 35.0% | |
| TAATGAGATCCAGATCTGTT+GGG | + | chr3_4:9820822-9820841 | Msa0489460:three_prime_UTR | 35.0% | |
| ! | GACTTTTCCAACTCTCACAA+GGG | + | chr3_4:9816015-9816034 | Msa0489460:five_prime_UTR | 40.0% |
| TGAAAAACCCTTGTGAGAGT+TGG | - | chr3_4:9816025-9816044 | None:intergenic | 40.0% | |
| !!! | AGAGTGTGAGAGAGTGTTTT+TGG | - | chr3_4:9816085-9816104 | None:intergenic | 40.0% |
| GAAGAAGAAGAAGAGCGATA+AGG | - | chr3_4:9816116-9816135 | None:intergenic | 40.0% | |
| TATCTAGGTTTCTTCGCTCA+TGG | + | chr3_4:9816300-9816319 | Msa0489460:intron | 40.0% | |
| CATGGCTTCCAATTCTCAAA+AGG | + | chr3_4:9816318-9816337 | Msa0489460:exon | 40.0% | |
| TGCTGAGAAATCAAAAGGGT+TGG | - | chr3_4:9817187-9817206 | None:intergenic | 40.0% | |
| TTTATAAGCTGGTCATGCGT+TGG | + | chr3_4:9817361-9817380 | Msa0489460:intron | 40.0% | |
| ACAGGCTGCAAAATTGCAAA+TGG | - | chr3_4:9817394-9817413 | None:intergenic | 40.0% | |
| CAGAATCATTGTACGATGAC+AGG | - | chr3_4:9817412-9817431 | None:intergenic | 40.0% | |
| CTGTCATCGTACAATGATTC+TGG | + | chr3_4:9817410-9817429 | Msa0489460:intron | 40.0% | |
| ! | CGTACAATGATTCTGGGAAT+AGG | + | chr3_4:9817417-9817436 | Msa0489460:intron | 40.0% |
| !! | TAAAGAACGCTTTTTGCCGA+CGG | - | chr3_4:9817488-9817507 | None:intergenic | 40.0% |
| ! | GGACTTTTGAACTCATCGTA+TGG | + | chr3_4:9817698-9817717 | Msa0489460:intron | 40.0% |
| GGATCCAAGTATCAAGGAAT+TGG | + | chr3_4:9817855-9817874 | Msa0489460:intron | 40.0% | |
| TCAGCCAATTCCTTGATACT+TGG | - | chr3_4:9817862-9817881 | None:intergenic | 40.0% | |
| TCAGCCATCTGATTGAATGA+TGG | - | chr3_4:9817901-9817920 | None:intergenic | 40.0% | |
| CAGCTTCAGAAAACTTTGCA+TGG | + | chr3_4:9817922-9817941 | Msa0489460:CDS | 40.0% | |
| CTTCAGAAAACTTTGCATGG+AGG | + | chr3_4:9817925-9817944 | Msa0489460:CDS | 40.0% | |
| GTATCTTTCATCCATGCAAC+AGG | + | chr3_4:9817990-9818009 | Msa0489460:CDS | 40.0% | |
| CTGAACTTTATTGGACGGAT+TGG | - | chr3_4:9818190-9818209 | None:intergenic | 40.0% | |
| AGTTCAGCTTGAAGAGAGAA+TGG | + | chr3_4:9818203-9818222 | Msa0489460:CDS | 40.0% | |
| TAGATACTGGAATGATGAGG+AGG | + | chr3_4:9818410-9818429 | Msa0489460:intron | 40.0% | |
| !!! | TGAGGAGGTTTTGAAGAAGT+TGG | + | chr3_4:9818425-9818444 | Msa0489460:CDS | 40.0% |
| !!! | GAGGAGGTTTTGAAGAAGTT+GGG | + | chr3_4:9818426-9818445 | Msa0489460:CDS | 40.0% |
| ! | GCTGCTTCTTCTGAAAATTC+TGG | + | chr3_4:9818486-9818505 | Msa0489460:CDS | 40.0% |
| CCAGATGAAACAGAAGATGT+GGG | + | chr3_4:9818510-9818529 | Msa0489460:CDS | 40.0% | |
| GTTCATCATACTGCTAGTGT+TGG | + | chr3_4:9818552-9818571 | Msa0489460:CDS | 40.0% | |
| !! | AGCTTTTGGGAGCTTCATAT+TGG | + | chr3_4:9818870-9818889 | Msa0489460:intron | 40.0% |
| !! | GCTTTTGGGAGCTTCATATT+GGG | + | chr3_4:9818871-9818890 | Msa0489460:intron | 40.0% |
| AGTAATGTAGTCCACTAGGT+TGG | + | chr3_4:9819065-9819084 | Msa0489460:intron | 40.0% | |
| !! | TCTTTAAGGTACCAACCTAG+TGG | - | chr3_4:9819079-9819098 | None:intergenic | 40.0% |
| GCAAAAAAAACTTCTGCAGC+GGG | - | chr3_4:9819111-9819130 | None:intergenic | 40.0% | |
| GGCAAAAAAAACTTCTGCAG+CGG | - | chr3_4:9819112-9819131 | None:intergenic | 40.0% | |
| TCCCTGAGTAACTTATAAGG+AGG | + | chr3_4:9819231-9819250 | Msa0489460:intron | 40.0% | |
| TTGTGTATGCCCTTGTGTAA+AGG | + | chr3_4:9819333-9819352 | Msa0489460:intron | 40.0% | |
| AGCATGCAACCTTTACACAA+GGG | - | chr3_4:9819345-9819364 | None:intergenic | 40.0% | |
| AAGCATGCAACCTTTACACA+AGG | - | chr3_4:9819346-9819365 | None:intergenic | 40.0% | |
| TCTTCACTTGCTTTACACCA+TGG | - | chr3_4:9819755-9819774 | None:intergenic | 40.0% | |
| AGCAAGTGAAGAATGTAACG+AGG | + | chr3_4:9819763-9819782 | Msa0489460:intron | 40.0% | |
| CGGACAGTATTCATAATGCT+TGG | + | chr3_4:9819847-9819866 | Msa0489460:intron | 40.0% | |
| CAGTAGTGTCATCATTGAGT+CGG | - | chr3_4:9819917-9819936 | None:intergenic | 40.0% | |
| GACTCAATGATGACACTACT+GGG | + | chr3_4:9819916-9819935 | Msa0489460:intron | 40.0% | |
| ACAATGCTGCTATGCTCATT+TGG | + | chr3_4:9819940-9819959 | Msa0489460:intron | 40.0% | |
| CACTTCACCTGGAATATATC+AGG | - | chr3_4:9820147-9820166 | None:intergenic | 40.0% | |
| TGGAGCAAAAGTAGATGCTT+TGG | + | chr3_4:9820188-9820207 | Msa0489460:CDS | 40.0% | |
| CTTCATTATGCAGCAGGTTA+TGG | + | chr3_4:9820231-9820250 | Msa0489460:CDS | 40.0% | |
| GAAATTGGCATGAACAGTTG+AGG | - | chr3_4:9820337-9820356 | None:intergenic | 40.0% | |
| ! | CTTCCTACATCTTGTTGTAG+TGG | + | chr3_4:9820356-9820375 | Msa0489460:intron | 40.0% |
| TAATTGCATGGCATGCATGA+TGG | + | chr3_4:9820531-9820550 | Msa0489460:exon | 40.0% | |
| TGCCGTCACCAAAAAGAAAA+TGG | + | chr3_4:9820560-9820579 | Msa0489460:three_prime_UTR | 40.0% | |
| TATCAAGATTAGCGCCGTAA+TGG | + | chr3_4:9820719-9820738 | Msa0489460:three_prime_UTR | 40.0% | |
| ! | GGACTTTTCCAACTCTCACA+AGG | + | chr3_4:9816014-9816033 | Msa0489460:five_prime_UTR | 45.0% |
| !! | CACAGGTGTTATTGTCGTCT+TGG | + | chr3_4:9816621-9816640 | Msa0489460:intron | 45.0% |
| !!! | CGTCTTGGTTTTGTTGGTGT+TGG | + | chr3_4:9816636-9816655 | Msa0489460:intron | 45.0% |
| GTGCAGTACACCCTAAGTAA+AGG | - | chr3_4:9816901-9816920 | None:intergenic | 45.0% | |
| ! | GAGAAATCAAAAGGGTTGGC+TGG | - | chr3_4:9817183-9817202 | None:intergenic | 45.0% |
| !! | AAAGAACGCTTTTTGCCGAC+GGG | - | chr3_4:9817487-9817506 | None:intergenic | 45.0% |
| GTCACAGGATCCAAGTATCA+AGG | + | chr3_4:9817849-9817868 | Msa0489460:intron | 45.0% | |
| TTCATCCATGCAACAGGTCA+TGG | + | chr3_4:9817996-9818015 | Msa0489460:CDS | 45.0% | |
| ATTTGCCATGACCTGTTGCA+TGG | - | chr3_4:9818004-9818023 | None:intergenic | 45.0% | |
| CAAGCATGGAAGACATCGAT+GGG | - | chr3_4:9818158-9818177 | None:intergenic | 45.0% | |
| TCAAGCATGGAAGACATCGA+TGG | - | chr3_4:9818159-9818178 | None:intergenic | 45.0% | |
| AGAGAGAATGGCACGCATAA+AGG | + | chr3_4:9818215-9818234 | Msa0489460:CDS | 45.0% | |
| !! | AAGAAGTTGGGACTAGCCAT+GGG | + | chr3_4:9818438-9818457 | Msa0489460:CDS | 45.0% |
| GCCAGATGAAACAGAAGATG+TGG | + | chr3_4:9818509-9818528 | Msa0489460:CDS | 45.0% | |
| CCCACATCTTCTGTTTCATC+TGG | - | chr3_4:9818513-9818532 | None:intergenic | 45.0% | |
| !! | TGCTAGTGTTGGTGACATTG+AGG | + | chr3_4:9818563-9818582 | Msa0489460:CDS | 45.0% |
| !! | TTGAATAGAAGGTGCCGATG+TGG | + | chr3_4:9818678-9818697 | Msa0489460:intron | 45.0% |
| AAGTTACTCAGGGAAGTCTG+TGG | - | chr3_4:9819225-9819244 | None:intergenic | 45.0% | |
| ! | CAATGGTGGAACTTCACAAC+AGG | - | chr3_4:9819470-9819489 | None:intergenic | 45.0% |
| TTCATCCTTATCAGCACCAG+AGG | - | chr3_4:9819579-9819598 | None:intergenic | 45.0% | |
| GTGAAGAATGTAACGAGGCT+CGG | + | chr3_4:9819768-9819787 | Msa0489460:intron | 45.0% | |
| TGAAGAATGTAACGAGGCTC+GGG | + | chr3_4:9819769-9819788 | Msa0489460:intron | 45.0% | |
| TTCTTCCACCACAGTGAACT+CGG | + | chr3_4:9819827-9819846 | Msa0489460:intron | 45.0% | |
| AATACTGTCCGAGTTCACTG+TGG | - | chr3_4:9819838-9819857 | None:intergenic | 45.0% | |
| CGACTCAATGATGACACTAC+TGG | + | chr3_4:9819915-9819934 | Msa0489460:intron | 45.0% | |
| ACAGCTCTTCATTATGCAGC+AGG | + | chr3_4:9820225-9820244 | Msa0489460:CDS | 45.0% | |
| ATTATGCAGCAGGTTATGGC+AGG | + | chr3_4:9820235-9820254 | Msa0489460:CDS | 45.0% | |
| TTATGGCAGGAAGGAATGTG+TGG | + | chr3_4:9820248-9820267 | Msa0489460:CDS | 45.0% | |
| CATCTTTCTCAAGAAGCTGG+AGG | - | chr3_4:9820503-9820522 | None:intergenic | 45.0% | |
| CATGCATGCCATGCAATTAC+AGG | - | chr3_4:9820530-9820549 | None:intergenic | 45.0% | |
| ATATGTAACACCGACAGGCG+TGG | - | chr3_4:9816755-9816774 | None:intergenic | 50.0% | |
| ! | AGACGAGAAAGCTGGTTCAG+CGG | + | chr3_4:9817077-9817096 | Msa0489460:intron | 50.0% |
| AGCTGGTCATGCGTTGGATT+TGG | + | chr3_4:9817367-9817386 | Msa0489460:intron | 50.0% | |
| CCTGCATCAATGCATTACCC+AGG | - | chr3_4:9818053-9818072 | None:intergenic | 50.0% | |
| ! | CCTGGGTAATGCATTGATGC+AGG | + | chr3_4:9818050-9818069 | Msa0489460:CDS | 50.0% |
| !! | GAAGAAGTTGGGACTAGCCA+TGG | + | chr3_4:9818437-9818456 | Msa0489460:CDS | 50.0% |
| !! | TAGAAGGTGCCGATGTGGTT+AGG | + | chr3_4:9818683-9818702 | Msa0489460:intron | 50.0% |
| ! | TTTTGCTTGTGGTTACGGCG+AGG | + | chr3_4:9819628-9819647 | Msa0489460:CDS | 50.0% |
| AGAAGGAGGAGAGGGCTAAA+TGG | - | chr3_4:9820024-9820043 | None:intergenic | 50.0% | |
| TTTAGCCCTCTCCTCCTTCT+AGG | + | chr3_4:9820024-9820043 | Msa0489460:intron | 50.0% | |
| TTAGCCCTCTCCTCCTTCTA+GGG | + | chr3_4:9820025-9820044 | Msa0489460:intron | 50.0% | |
| TCTAACAAGCCCTCCCTAGA+AGG | - | chr3_4:9820041-9820060 | None:intergenic | 50.0% | |
| !! | CTACTTTTGCTCCAGCCTCA+AGG | - | chr3_4:9820182-9820201 | None:intergenic | 50.0% |
| ! | GTGGCCTTGCTCCTTGAAAA+CGG | + | chr3_4:9820267-9820286 | Msa0489460:CDS | 50.0% |
| !! | AGCACCGTTTTCAAGGAGCA+AGG | - | chr3_4:9820274-9820293 | None:intergenic | 50.0% |
| ! | ACACTGCAGCACCGTTTTCA+AGG | - | chr3_4:9820281-9820300 | None:intergenic | 50.0% |
| ATGTTGGACACCACGCCTGT+CGG | + | chr3_4:9816742-9816761 | Msa0489460:intron | 55.0% | |
| ACATCCTCGAACGCAACTCC+CGG | + | chr3_4:9817123-9817142 | Msa0489460:CDS | 55.0% | |
| ACCAGTCCCAGGTGGAAAAC+CGG | - | chr3_4:9817157-9817176 | None:intergenic | 55.0% | |
| TTGGCTGGAAAACCAGTCCC+AGG | - | chr3_4:9817168-9817187 | None:intergenic | 55.0% | |
| TCAGAGGTCTTCACACCCGT+CGG | + | chr3_4:9817469-9817488 | Msa0489460:intron | 55.0% | |
| !! | TTTGCATGGAGGAGCACCAC+AGG | + | chr3_4:9817936-9817955 | Msa0489460:CDS | 55.0% |
| TTAGGGAGACCACCATCCTG+TGG | - | chr3_4:9817955-9817974 | None:intergenic | 55.0% | |
| GCGGTCCTGCTGTAATGATG+AGG | + | chr3_4:9818280-9818299 | Msa0489460:CDS | 55.0% | |
| AGAGGTTGGAGGAATGCCCA+TGG | - | chr3_4:9818457-9818476 | None:intergenic | 55.0% | |
| ATGGGCATTCCTCCAACCTC+TGG | + | chr3_4:9818456-9818475 | Msa0489460:CDS | 55.0% | |
| AGAAGCAGCTGCATCTCCAG+AGG | - | chr3_4:9818475-9818494 | None:intergenic | 55.0% | |
| ! | TTGAAAGCTGCGCTAGCCTC+TGG | + | chr3_4:9819560-9819579 | Msa0489460:CDS | 55.0% |
| !! | GCTAGCCTCTGGTGCTGATA+AGG | + | chr3_4:9819571-9819590 | Msa0489460:CDS | 55.0% |
| ACTGTCCGAGTTCACTGTGG+TGG | - | chr3_4:9819835-9819854 | None:intergenic | 55.0% | |
| AACAAGCCCTCCCTAGAAGG+AGG | - | chr3_4:9820038-9820057 | None:intergenic | 55.0% | |
| TGCAGCAGGTTATGGCAGGA+AGG | + | chr3_4:9820239-9820258 | Msa0489460:CDS | 55.0% | |
| TGGAAAACCGGTCCCAGGTC+CGG | - | chr3_4:9817145-9817164 | None:intergenic | 60.0% | |
| !! | CTGGGACCGGTTTTCCACCT+GGG | + | chr3_4:9817148-9817167 | Msa0489460:CDS | 60.0% |
| !! | ACCGGTTTTCCACCTGGGAC+TGG | + | chr3_4:9817153-9817172 | Msa0489460:CDS | 60.0% |
| GCTGGAAAACCAGTCCCAGG+TGG | - | chr3_4:9817165-9817184 | None:intergenic | 60.0% | |
| !! | CATGGAGGAGCACCACAGGA+TGG | + | chr3_4:9817940-9817959 | Msa0489460:CDS | 60.0% |
| TATGACCATGGCTGAGCGCC+TGG | + | chr3_4:9818032-9818051 | Msa0489460:CDS | 60.0% | |
| ATGACCATGGCTGAGCGCCT+GGG | + | chr3_4:9818033-9818052 | Msa0489460:CDS | 60.0% | |
| ATTACCCAGGCGCTCAGCCA+TGG | - | chr3_4:9818040-9818059 | None:intergenic | 60.0% | |
| GCTGCATCTCCAGAGGTTGG+AGG | - | chr3_4:9818468-9818487 | None:intergenic | 60.0% | |
| GCAGCTGCATCTCCAGAGGT+TGG | - | chr3_4:9818471-9818490 | None:intergenic | 60.0% | |
| CCCTCCCTAGAAGGAGGAGA+GGG | - | chr3_4:9820032-9820051 | None:intergenic | 60.0% | |
| ! | CCCTCTCCTCCTTCTAGGGA+GGG | + | chr3_4:9820029-9820048 | Msa0489460:intron | 60.0% |
| GAGCTTGCGCACACTTCACC+TGG | - | chr3_4:9820158-9820177 | None:intergenic | 60.0% | |
| GTGTGCGCAAGCTCTCCTTG+AGG | + | chr3_4:9820164-9820183 | Msa0489460:CDS | 60.0% | |
| AGGTCCGGGAGTTGCGTTCG+AGG | - | chr3_4:9817130-9817149 | None:intergenic | 65.0% | |
| TCGAACGCAACTCCCGGACC+TGG | + | chr3_4:9817129-9817148 | Msa0489460:CDS | 65.0% | |
| CGAACGCAACTCCCGGACCT+GGG | + | chr3_4:9817130-9817149 | Msa0489460:CDS | 65.0% | |
| GGAAAACCGGTCCCAGGTCC+GGG | - | chr3_4:9817144-9817163 | None:intergenic | 65.0% | |
| CCAGGTGGAAAACCGGTCCC+AGG | - | chr3_4:9817150-9817169 | None:intergenic | 65.0% | |
| !! | CCTGGGACCGGTTTTCCACC+TGG | + | chr3_4:9817147-9817166 | Msa0489460:CDS | 65.0% |
| !! | GGAGGAGCACCACAGGATGG+TGG | + | chr3_4:9817943-9817962 | Msa0489460:CDS | 65.0% |
| ! | GCCCTCTCCTCCTTCTAGGG+AGG | + | chr3_4:9820028-9820047 | Msa0489460:intron | 65.0% |
| GCCCTCCCTAGAAGGAGGAG+AGG | - | chr3_4:9820033-9820052 | None:intergenic | 65.0% | |
| GCGCAAGCTCTCCTTGAGGC+TGG | + | chr3_4:9820168-9820187 | Msa0489460:CDS | 65.0% | |
| GCAACTCCCGGACCTGGGAC+CGG | + | chr3_4:9817135-9817154 | Msa0489460:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 9816013 | 9820850 | 9816013 | ID=Msa0489460;Name=Msa0489460 |
| chr3_4 | mRNA | 9816013 | 9820850 | 9816013 | ID=Msa0489460-mRNA-1;Parent=Msa0489460;Name=Msa0489460-mRNA-1;_AED=0.10;_eAED=0.10;_QI=155|0.87|0.88|1|0.87|0.88|9|317|349 |
| chr3_4 | exon | 9816013 | 9816155 | 9816013 | ID=Msa0489460-mRNA-1:exon:3198;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9816307 | 9816352 | 9816307 | ID=Msa0489460-mRNA-1:exon:3199;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9817079 | 9817224 | 9817079 | ID=Msa0489460-mRNA-1:exon:3200;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9817856 | 9818071 | 9817856 | ID=Msa0489460-mRNA-1:exon:3201;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9818153 | 9818301 | 9818153 | ID=Msa0489460-mRNA-1:exon:3202;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9818413 | 9818584 | 9818413 | ID=Msa0489460-mRNA-1:exon:3203;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9819557 | 9819649 | 9819557 | ID=Msa0489460-mRNA-1:exon:3204;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9820159 | 9820298 | 9820159 | ID=Msa0489460-mRNA-1:exon:3205;Parent=Msa0489460-mRNA-1 |
| chr3_4 | exon | 9820434 | 9820850 | 9820434 | ID=Msa0489460-mRNA-1:exon:3206;Parent=Msa0489460-mRNA-1 |
| chr3_4 | five_prime_UTR | 9816013 | 9816155 | 9816013 | ID=Msa0489460-mRNA-1:five_prime_utr;Parent=Msa0489460-mRNA-1 |
| chr3_4 | five_prime_UTR | 9816307 | 9816318 | 9816307 | ID=Msa0489460-mRNA-1:five_prime_utr;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9816319 | 9816352 | 9816319 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9817079 | 9817224 | 9817079 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9817856 | 9818071 | 9817856 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9818153 | 9818301 | 9818153 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9818413 | 9818584 | 9818413 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9819557 | 9819649 | 9819557 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9820159 | 9820298 | 9820159 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | CDS | 9820434 | 9820533 | 9820434 | ID=Msa0489460-mRNA-1:cds;Parent=Msa0489460-mRNA-1 |
| chr3_4 | three_prime_UTR | 9820534 | 9820850 | 9820534 | ID=Msa0489460-mRNA-1:three_prime_utr;Parent=Msa0489460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
