Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394010 | XP_013458822.1 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394010 | sp|Q29Q26|AKR2B_ARATH | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.19e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394010 | A0A072USU9 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016110 | Msa0394010 | 0.806409 | 8.342699e-50 | -8.615850e-47 |
| Msa0016160 | Msa0394010 | 0.804375 | 2.226610e-49 | -8.615850e-47 |
| Msa0043680 | Msa0394010 | 0.802865 | 4.580650e-49 | -8.615850e-47 |
| Msa0065390 | Msa0394010 | 0.819327 | 1.231203e-52 | -8.615850e-47 |
| Msa0110710 | Msa0394010 | 0.818129 | 2.302389e-52 | -8.615850e-47 |
| Msa0122210 | Msa0394010 | 0.804724 | 1.882699e-49 | -8.615850e-47 |
| Msa0149070 | Msa0394010 | 0.811588 | 6.494824e-51 | -8.615850e-47 |
| Msa0155550 | Msa0394010 | 0.802462 | 5.547266e-49 | -8.615850e-47 |
| Msa0157020 | Msa0394010 | 0.800663 | 1.296500e-48 | -8.615850e-47 |
| Msa0194400 | Msa0394010 | 0.815900 | 7.294842e-52 | -8.615850e-47 |
| Msa0202630 | Msa0394010 | 0.802143 | 6.450667e-49 | -8.615850e-47 |
| Msa0210780 | Msa0394010 | 0.827201 | 1.783052e-54 | -8.615850e-47 |
| Msa0210840 | Msa0394010 | 0.822818 | 1.932154e-53 | -8.615850e-47 |
| Msa0236130 | Msa0394010 | 0.813393 | 2.618906e-51 | -8.615850e-47 |
| Msa0394010 | Msa0401370 | 0.802319 | 5.936998e-49 | -8.615850e-47 |
| Msa0394010 | Msa0417630 | 0.801691 | 7.991260e-49 | -8.615850e-47 |
| Msa0394010 | Msa0441840 | 0.915867 | 3.531112e-85 | -8.615850e-47 |
| Msa0394010 | Msa0463810 | 0.832597 | 8.633914e-56 | -8.615850e-47 |
| Msa0394010 | Msa0489460 | 0.956568 | 2.171660e-114 | -8.615850e-47 |
| Msa0394010 | Msa0521780 | -0.830951 | 2.199326e-55 | -8.615850e-47 |
| Msa0394010 | Msa0577110 | 0.829138 | 6.085870e-55 | -8.615850e-47 |
| Msa0394010 | Msa0598080 | 0.812083 | 5.068246e-51 | -8.615850e-47 |
| Msa0394010 | Msa0640880 | 0.803394 | 3.560375e-49 | -8.615850e-47 |
| Msa0394010 | Msa0647460 | 0.823128 | 1.636795e-53 | -8.615850e-47 |
| Msa0394010 | Msa0690500 | 0.837138 | 6.201767e-57 | -8.615850e-47 |
| Msa0394010 | Msa0704720 | 0.815444 | 9.216250e-52 | -8.615850e-47 |
| Msa0394010 | Msa0705250 | 0.804636 | 1.964330e-49 | -8.615850e-47 |
| Msa0394010 | Msa0733110 | 0.804944 | 1.693674e-49 | -8.615850e-47 |
| Msa0394010 | Msa0734430 | 0.824364 | 8.401826e-54 | -8.615850e-47 |
| Msa0394010 | Msa0738970 | 0.804799 | 1.815797e-49 | -8.615850e-47 |
| Msa0394010 | Msa0755570 | 0.800030 | 1.745021e-48 | -8.615850e-47 |
| Msa0394010 | Msa0804110 | 0.808994 | 2.355603e-50 | -8.615850e-47 |
| Msa0394010 | Msa0828810 | 0.803925 | 2.761886e-49 | -8.615850e-47 |
| Msa0394010 | Msa0859390 | 0.810409 | 1.169476e-50 | -8.615850e-47 |
| Msa0394010 | Msa0893390 | 0.815048 | 1.128870e-51 | -8.615850e-47 |
| Msa0394010 | Msa0900320 | 0.806416 | 8.312434e-50 | -8.615850e-47 |
| Msa0394010 | Msa0930160 | 0.820133 | 8.056235e-53 | -8.615850e-47 |
| Msa0394010 | Msa1030820 | 0.839460 | 1.563416e-57 | -8.615850e-47 |
| Msa0394010 | Msa1045440 | 0.803560 | 3.288795e-49 | -8.615850e-47 |
| Msa0394010 | Msa1075120 | 0.804070 | 2.577256e-49 | -8.615850e-47 |
| Msa0394010 | Msa1157680 | 0.854418 | 1.247581e-61 | -8.615850e-47 |
| Msa0394010 | Msa1189630 | 0.805897 | 1.069195e-49 | -8.615850e-47 |
| Msa0394010 | Msa1196910 | 0.801082 | 1.065046e-48 | -8.615850e-47 |
| Msa0394010 | Msa1202730 | 0.809353 | 1.973363e-50 | -8.615850e-47 |
| Msa0394010 | Msa1208750 | 0.803593 | 3.237763e-49 | -8.615850e-47 |
| Msa0394010 | Msa1215530 | 0.833977 | 3.910754e-56 | -8.615850e-47 |
| Msa0394010 | Msa1219250 | 0.818992 | 1.467584e-52 | -8.615850e-47 |
| Msa0394010 | Msa1398740 | 0.819313 | 1.239886e-52 | -8.615850e-47 |
| Msa0394010 | Msa1398840 | 0.811299 | 7.505276e-51 | -8.615850e-47 |
| Msa0394010 | Msa1404790 | 0.833493 | 5.165667e-56 | -8.615850e-47 |
| Msa0394010 | Msa1437150 | 0.802936 | 4.427097e-49 | -8.615850e-47 |
| Msa0394010 | Msa1460650 | 0.809352 | 1.974591e-50 | -8.615850e-47 |
| Msa0247310 | Msa0394010 | 0.802063 | 6.702639e-49 | -8.615850e-47 |
| Msa0284260 | Msa0394010 | 0.818748 | 1.667287e-52 | -8.615850e-47 |
| Msa0307460 | Msa0394010 | 0.818003 | 2.458200e-52 | -8.615850e-47 |
| Msa0314640 | Msa0394010 | 0.813258 | 2.804141e-51 | -8.615850e-47 |
| Msa0319210 | Msa0394010 | 0.810547 | 1.091945e-50 | -8.615850e-47 |
| Msa0341260 | Msa0394010 | 0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0347400 | Msa0394010 | 0.936377 | 1.913428e-97 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394010 | MtrunA17_Chr3g0079591 | 98.854 | 349 | 3 | 1 | 1 | 349 | 1 | 348 | 0.0 | 702 |
| Msa0394010 | MtrunA17_Chr3g0142201 | 57.676 | 241 | 93 | 5 | 1 | 239 | 1 | 234 | 3.36e-85 | 263 |
| Msa0394010 | MtrunA17_Chr1g0176011 | 57.955 | 176 | 56 | 4 | 50 | 225 | 18 | 175 | 5.59e-54 | 182 |
| Msa0394010 | MtrunA17_Chr6g0463271 | 44.856 | 243 | 102 | 6 | 1 | 239 | 1 | 215 | 6.61e-52 | 176 |
| Msa0394010 | MtrunA17_Chr1g0175931 | 56.818 | 176 | 58 | 4 | 50 | 225 | 18 | 175 | 3.68e-51 | 174 |
| Msa0394010 | MtrunA17_Chr1g0175951 | 59.211 | 152 | 60 | 2 | 74 | 225 | 2 | 151 | 8.83e-50 | 170 |
| Msa0394010 | MtrunA17_Chr3g0142931 | 47.980 | 198 | 75 | 5 | 42 | 239 | 39 | 208 | 1.13e-48 | 167 |
| Msa0394010 | MtrunA17_Chr3g0144061 | 60.577 | 104 | 35 | 1 | 136 | 239 | 1 | 98 | 3.55e-35 | 124 |
| Msa0394010 | MtrunA17_Chr1g0175991 | 51.079 | 139 | 48 | 5 | 50 | 188 | 34 | 152 | 1.04e-29 | 115 |
| Msa0394010 | MtrunA17_Chr4g0065471 | 42.478 | 113 | 43 | 3 | 178 | 284 | 26 | 122 | 4.52e-15 | 74.3 |
| Msa0394010 | MtrunA17_Chr5g0418551 | 36.879 | 141 | 82 | 1 | 203 | 343 | 75 | 208 | 1.89e-14 | 72.4 |
| Msa0394010 | MtrunA17_Chr1g0187681 | 33.588 | 131 | 84 | 2 | 222 | 349 | 4 | 134 | 2.76e-13 | 70.5 |
| Msa0394010 | MtrunA17_Chr6g0461061 | 37.000 | 100 | 62 | 1 | 245 | 343 | 230 | 329 | 3.26e-12 | 67.4 |
| Msa0394010 | MtrunA17_Chr1g0180301 | 37.705 | 122 | 66 | 4 | 231 | 343 | 43 | 163 | 3.39e-12 | 65.1 |
| Msa0394010 | MtrunA17_Chr4g0038681 | 39.316 | 117 | 68 | 2 | 219 | 332 | 116 | 232 | 2.12e-11 | 64.7 |
| Msa0394010 | MtrunA17_Chr1g0196261 | 37.113 | 97 | 60 | 1 | 233 | 328 | 348 | 444 | 5.40e-11 | 63.5 |
| Msa0394010 | MtrunA17_Chr3g0082141 | 30.128 | 156 | 86 | 3 | 180 | 331 | 665 | 801 | 8.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0394010 | AT2G17390.1 | 64.607 | 356 | 107 | 5 | 1 | 349 | 1 | 344 | 4.26e-153 | 434 |
| Msa0394010 | AT4G35450.2 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0394010 | AT4G35450.3 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0394010 | AT4G35450.1 | 64.672 | 351 | 113 | 6 | 1 | 349 | 1 | 342 | 8.22e-149 | 423 |
| Msa0394010 | AT4G35450.5 | 63.510 | 359 | 112 | 7 | 1 | 349 | 1 | 350 | 2.96e-146 | 417 |
| Msa0394010 | AT4G35450.4 | 67.961 | 309 | 93 | 3 | 41 | 349 | 2 | 304 | 8.30e-146 | 414 |
| Msa0394010 | AT2G03430.1 | 39.000 | 100 | 61 | 0 | 229 | 328 | 87 | 186 | 3.54e-14 | 71.6 |
| Msa0394010 | AT3G23280.1 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.10e-13 | 72.4 |
| Msa0394010 | AT3G23280.2 | 34.400 | 125 | 79 | 2 | 228 | 349 | 10 | 134 | 1.20e-13 | 72.0 |
| Msa0394010 | AT5G53470.1 | 34.615 | 104 | 68 | 0 | 229 | 332 | 222 | 325 | 2.79e-13 | 70.5 |
| Msa0394010 | AT5G12320.1 | 35.354 | 99 | 64 | 0 | 233 | 331 | 19 | 117 | 5.31e-12 | 63.5 |
| Msa0394010 | AT4G27780.1 | 33.654 | 104 | 69 | 0 | 229 | 332 | 237 | 340 | 8.63e-12 | 65.9 |
| Msa0394010 | AT2G47450.1 | 40.351 | 114 | 66 | 2 | 220 | 332 | 123 | 235 | 1.67e-11 | 65.1 |
Find 101 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCAAGCTGAACTTTAT+TGG | 0.122980 | 3_2:-8307585 | None:intergenic |
| TCTTCTTCTTCTTCAGATTC+AGG | 0.165026 | 3_2:+8305524 | Msa0394010:five_prime_UTR |
| GCTGCTTCTTCTGAAAATTC+TGG | 0.165755 | 3_2:+8307875 | Msa0394010:CDS |
| TTGCAGTACTCTGCAAAATA+TGG | 0.286124 | 3_2:+8309817 | Msa0394010:intron |
| CCCACATCTTCTGTTTCATC+TGG | 0.296289 | 3_2:-8307899 | None:intergenic |
| TTTAATTTCGCAACATCTAT+AGG | 0.306488 | 3_2:-8309851 | None:intergenic |
| TCAGCCATGGTCATAAAATT+AGG | 0.317600 | 3_2:-8307413 | None:intergenic |
| CATGCATGCCTTGCAATTAC+AGG | 0.322895 | 3_2:-8309916 | None:intergenic |
| CTTCATTATGCAGCAGGTTA+TGG | 0.341988 | 3_2:+8309621 | Msa0394010:CDS |
| TCTCAAAAGGATATTCCTTC+TGG | 0.350480 | 3_2:+8305721 | Msa0394010:CDS |
| GTTGTCGCAAAATTCTCTTT+TGG | 0.359269 | 3_2:+8310168 | Msa0394010:three_prime_UTR |
| TATGACCATGGCTGAGCGCC+TGG | 0.371236 | 3_2:+8307421 | Msa0394010:CDS |
| TGGAAAACCGGTCCCAGGTC+CGG | 0.375249 | 3_2:-8306531 | None:intergenic |
| AGAGAGAATGGCACGCATAA+AGG | 0.386835 | 3_2:+8307604 | Msa0394010:CDS |
| CTCATTGCTGAGAAATCAAA+AGG | 0.392741 | 3_2:-8306578 | None:intergenic |
| CTGCTTCTTCTGAAAATTCT+GGG | 0.395319 | 3_2:+8307876 | Msa0394010:CDS |
| TCAGCCAATTCCTTGATACT+TGG | 0.405646 | 3_2:-8307248 | None:intergenic |
| GGATCCAAGTATCAAGGAAT+TGG | 0.418761 | 3_2:+8307244 | Msa0394010:intron |
| TACTGCTGATTATCAAAGTT+AGG | 0.425274 | 3_2:-8307359 | None:intergenic |
| CTGAACTTTATTGGACGGAT+TGG | 0.428989 | 3_2:-8307576 | None:intergenic |
| ACCAGTCCCAGGTGGAAAAC+CGG | 0.440893 | 3_2:-8306543 | None:intergenic |
| TTGAAAGCTGCGCTAGCCTC+TGG | 0.443610 | 3_2:+8308950 | Msa0394010:CDS |
| AGGTCCGGGAGTTGCGTTCG+AGG | 0.459739 | 3_2:-8306516 | None:intergenic |
| GCGCAAGCTCTCCTTGAGGC+TGG | 0.462394 | 3_2:+8309558 | Msa0394010:CDS |
| GGAAAACCGGTCCCAGGTCC+GGG | 0.463114 | 3_2:-8306530 | None:intergenic |
| TCGAACGCAACTCCCGGACC+TGG | 0.465039 | 3_2:+8306518 | Msa0394010:CDS |
| ATGGGCATTCCTCCAACCTC+TGG | 0.465285 | 3_2:+8307845 | Msa0394010:CDS |
| TCTAAAATATGTTTCAAAGA+TGG | 0.467672 | 3_2:-8307632 | None:intergenic |
| TGGAGCAAAAGTAGATGCTT+TGG | 0.468103 | 3_2:+8309578 | Msa0394010:CDS |
| TATCTAGGTTTCTTCGCTCA+TGG | 0.468456 | 3_2:+8305690 | Msa0394010:intron |
| GAAGAAGTTGGGACTAGCCA+TGG | 0.471435 | 3_2:+8307826 | Msa0394010:CDS |
| GAAGAAGAAGAAGAGCGATA+AGG | 0.472336 | 3_2:-8305503 | None:intergenic |
| GTATCTTTCATCCATGCAAC+AGG | 0.477789 | 3_2:+8307379 | Msa0394010:CDS |
| AAAAGAAAATGGAAACTTGA+GGG | 0.478831 | 3_2:+8309960 | Msa0394010:three_prime_UTR |
| GAGAAATCAAAAGGGTTGGC+TGG | 0.479871 | 3_2:-8306569 | None:intergenic |
| TATCAAGATTAGCGCCGTAA+TGG | 0.480898 | 3_2:+8310108 | Msa0394010:three_prime_UTR |
| CATGGCTTCCAATTCTCAAA+AGG | 0.488909 | 3_2:+8305708 | Msa0394010:exon |
| AAACATCTTTCTCAAGAAGC+TGG | 0.492614 | 3_2:-8309892 | None:intergenic |
| GCTAGCCTCTGGTGCTGATA+AGG | 0.495452 | 3_2:+8308961 | Msa0394010:CDS |
| TAATGAGATCCAGATCTGTT+GGG | 0.509322 | 3_2:+8310211 | Msa0394010:three_prime_UTR |
| ACAGCTCTTCATTATGCAGC+AGG | 0.511661 | 3_2:+8309615 | Msa0394010:CDS |
| TCAACGAAATGAAACCATTA+CGG | 0.513851 | 3_2:-8310122 | None:intergenic |
| ACTGCTGATTATCAAAGTTA+GGG | 0.515114 | 3_2:-8307358 | None:intergenic |
| AGTTCAGCTTGAAGAGAGAA+TGG | 0.515247 | 3_2:+8307592 | Msa0394010:CDS |
| ATAATGAGATCCAGATCTGT+TGG | 0.519485 | 3_2:+8310210 | Msa0394010:three_prime_UTR |
| ATTATGCAGCAGGTTATGGC+AGG | 0.522371 | 3_2:+8309625 | Msa0394010:CDS |
| TTCATCCATGCAACAGGTCA+TGG | 0.523490 | 3_2:+8307385 | Msa0394010:CDS |
| GCAGCTGCATCTCCAGAGGT+TGG | 0.525843 | 3_2:-8307857 | None:intergenic |
| GCAACTCCCGGACCTGGGAC+CGG | 0.525973 | 3_2:+8306524 | Msa0394010:CDS |
| ATTGGTAAAACTTTCAAGCA+TGG | 0.527566 | 3_2:-8307558 | None:intergenic |
| GTCACAGGATCCAAGTATCA+AGG | 0.533298 | 3_2:+8307238 | Msa0394010:intron |
| TTTGATTTCTCAGCAATGAG+TGG | 0.534737 | 3_2:+8306581 | Msa0394010:CDS |
| TGCTGAGAAATCAAAAGGGT+TGG | 0.535067 | 3_2:-8306573 | None:intergenic |
| CCAGGTGGAAAACCGGTCCC+AGG | 0.535701 | 3_2:-8306536 | None:intergenic |
| GTGGCCTTGCTCCTTGAAAA+CGG | 0.539036 | 3_2:+8309657 | Msa0394010:CDS |
| CCTGGGTAATGCATTGATGC+AGG | 0.543657 | 3_2:+8307439 | Msa0394010:CDS |
| CGAACGCAACTCCCGGACCT+GGG | 0.544955 | 3_2:+8306519 | Msa0394010:CDS |
| TCAAGCTGAACTTTATTGGA+CGG | 0.545387 | 3_2:-8307581 | None:intergenic |
| AGATCCATCATTCAATCAGA+TGG | 0.548584 | 3_2:+8307283 | Msa0394010:CDS |
| CAGCTTCAGAAAACTTTGCA+TGG | 0.549622 | 3_2:+8307311 | Msa0394010:CDS |
| ACATCCTCGAACGCAACTCC+CGG | 0.550672 | 3_2:+8306512 | Msa0394010:CDS |
| ATGACCATGGCTGAGCGCCT+GGG | 0.553159 | 3_2:+8307422 | Msa0394010:CDS |
| GCCAGATGAAACAGAAGATG+TGG | 0.557340 | 3_2:+8307898 | Msa0394010:CDS |
| TTTGCATGGAGGAGCACCAC+AGG | 0.559317 | 3_2:+8307325 | Msa0394010:CDS |
| AGTACTCTGCAAAATATGGA+TGG | 0.567263 | 3_2:+8309821 | Msa0394010:intron |
| ATTTGCCATGACCTGTTGCA+TGG | 0.569040 | 3_2:-8307390 | None:intergenic |
| GTTCATCATACTGCTAGTGT+TGG | 0.576940 | 3_2:+8307941 | Msa0394010:CDS |
| AAGAAGTTGGGACTAGCCAT+GGG | 0.580948 | 3_2:+8307827 | Msa0394010:CDS |
| GCTGCATCTCCAGAGGTTGG+AGG | 0.582935 | 3_2:-8307854 | None:intergenic |
| CAAGCATGGAAGACATCGAT+GGG | 0.587730 | 3_2:-8307544 | None:intergenic |
| ATAAACCTCATCATTACAGC+AGG | 0.589232 | 3_2:-8307674 | None:intergenic |
| TCAGCCATCTGATTGAATGA+TGG | 0.589706 | 3_2:-8307287 | None:intergenic |
| TAAGGATGAAGAAGATTCAG+AGG | 0.591403 | 3_2:+8308979 | Msa0394010:CDS |
| TAATTGCAAGGCATGCATGA+TGG | 0.592113 | 3_2:+8309920 | Msa0394010:exon |
| TTGGCTGGAAAACCAGTCCC+AGG | 0.592571 | 3_2:-8306554 | None:intergenic |
| TCAAGCATGGAAGACATCGA+TGG | 0.593586 | 3_2:-8307545 | None:intergenic |
| GTACTCTGCAAAATATGGAT+GGG | 0.595986 | 3_2:+8309822 | Msa0394010:intron |
| AGAAGCAGCTGCATCTCCAG+AGG | 0.600724 | 3_2:-8307861 | None:intergenic |
| TGCAGCAGGTTATGGCAGGA+AGG | 0.601460 | 3_2:+8309629 | Msa0394010:CDS |
| AAGGATGAAGAAGATTCAGA+GGG | 0.609631 | 3_2:+8308980 | Msa0394010:CDS |
| ATTACCCAGGCGCTCAGCCA+TGG | 0.617162 | 3_2:-8307426 | None:intergenic |
| TTCATCCTTATCAGCACCAG+AGG | 0.620315 | 3_2:-8308966 | None:intergenic |
| TGCTAGTGTTGGTGACATTG+AGG | 0.628525 | 3_2:+8307952 | Msa0394010:CDS |
| TCATTGCTGAGAAATCAAAA+GGG | 0.629369 | 3_2:-8306577 | None:intergenic |
| AAAGAAAATGGAAACTTGAG+GGG | 0.632524 | 3_2:+8309961 | Msa0394010:three_prime_UTR |
| CATGGAGGAGCACCACAGGA+TGG | 0.634179 | 3_2:+8307329 | Msa0394010:CDS |
| AGACGAGAAAGCTGGTTCAG+CGG | 0.641290 | 3_2:+8306466 | Msa0394010:intron |
| TAGATACTGGAATGATGAGG+AGG | 0.645865 | 3_2:+8307799 | Msa0394010:intron |
| CCTGCATCAATGCATTACCC+AGG | 0.649558 | 3_2:-8307439 | None:intergenic |
| CCAGATGAAACAGAAGATGT+GGG | 0.652505 | 3_2:+8307899 | Msa0394010:CDS |
| AGAGGTTGGAGGAATGCCCA+TGG | 0.656046 | 3_2:-8307843 | None:intergenic |
| ATCTAGATACTGGAATGATG+AGG | 0.659169 | 3_2:+8307796 | Msa0394010:intron |
| GGAGGAGCACCACAGGATGG+TGG | 0.665535 | 3_2:+8307332 | Msa0394010:CDS |
| CATCTTTCTCAAGAAGCTGG+AGG | 0.671030 | 3_2:-8309889 | None:intergenic |
| TTATGGCAGGAAGGAATGTG+TGG | 0.674267 | 3_2:+8309638 | Msa0394010:CDS |
| TTAGGGAGACCACCATCCTG+TGG | 0.684695 | 3_2:-8307341 | None:intergenic |
| GCTGGAAAACCAGTCCCAGG+TGG | 0.687890 | 3_2:-8306551 | None:intergenic |
| GTGTGCGCAAGCTCTCCTTG+AGG | 0.688818 | 3_2:+8309554 | Msa0394010:CDS |
| GCGGTCCTGCTGTAATGATG+AGG | 0.692207 | 3_2:+8307669 | Msa0394010:CDS |
| CTTCAGAAAACTTTGCATGG+AGG | 0.695368 | 3_2:+8307314 | Msa0394010:CDS |
| TTAGATGAGATAGAGAATGG+CGG | 0.730427 | 3_2:+8307650 | Msa0394010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGATTTTCTTTTTTAAAAA+TGG | - | chr3_2:8307703-8307722 | None:intergenic | 10.0% |
| !!! | AAAAAGAAAATCATATTTTA+TGG | + | chr3_2:8307709-8307728 | Msa0394010:intron | 10.0% |
| !!! | GTTATAAATAAGAAATTTTA+TGG | - | chr3_2:8310056-8310075 | None:intergenic | 10.0% |
| !! | AGCAAAATTAAGAATAATTA+AGG | - | chr3_2:8305572-8305591 | None:intergenic | 15.0% |
| !!! | GTTTGATTTTTTTTTTTTTG+TGG | + | chr3_2:8305898-8305917 | Msa0394010:intron | 15.0% |
| !! | ATCTTTGTAATAATCATTTA+AGG | + | chr3_2:8307012-8307031 | Msa0394010:intron | 15.0% |
| !!! | TAGTTAAATAGTTTTATACA+TGG | - | chr3_2:8307186-8307205 | None:intergenic | 15.0% |
| !!! | AAAATCATATTTTATGGTTT+TGG | + | chr3_2:8307715-8307734 | Msa0394010:intron | 15.0% |
| !! | ATAAATAAATAATACAATGG+TGG | - | chr3_2:8308874-8308893 | None:intergenic | 15.0% |
| !! | CCATTGTATTATTTATTTAT+CGG | + | chr3_2:8308874-8308893 | Msa0394010:intron | 15.0% |
| !! | AAAAACGAATAACAATTTCT+AGG | - | chr3_2:8305664-8305683 | None:intergenic | 20.0% |
| !!! | ATTGATTTTTTGTTCACTAT+CGG | + | chr3_2:8305795-8305814 | Msa0394010:intron | 20.0% |
| !! | TGTACAAAAAAAACATAATC+AGG | - | chr3_2:8305855-8305874 | None:intergenic | 20.0% |
| !! | ACATAATTGAATATAATCAC+AGG | + | chr3_2:8305995-8306014 | Msa0394010:intron | 20.0% |
| !! | CATATTAGTAAAAATCACAT+AGG | - | chr3_2:8306215-8306234 | None:intergenic | 20.0% |
| !!! | CTATGTGATTTTTACTAATA+TGG | + | chr3_2:8306213-8306232 | Msa0394010:intron | 20.0% |
| !! | TATTTGTATAGACAATACAA+AGG | + | chr3_2:8306246-8306265 | Msa0394010:intron | 20.0% |
| !! | ATTTGTATAGACAATACAAA+GGG | + | chr3_2:8306247-8306266 | Msa0394010:intron | 20.0% |
| !!! | CAAAATTAGTAAAGTGTTAT+TGG | - | chr3_2:8306343-8306362 | None:intergenic | 20.0% |
| !! | TACATCAATAACAATTAACA+GGG | - | chr3_2:8306689-8306708 | None:intergenic | 20.0% |
| !! | TTACATCAATAACAATTAAC+AGG | - | chr3_2:8306690-8306709 | None:intergenic | 20.0% |
| !! | AATACTATTATGATCCAAAT+TGG | - | chr3_2:8306977-8306996 | None:intergenic | 20.0% |
| !!! | TTTATTGAAGAGTTTAAGTT+AGG | + | chr3_2:8307052-8307071 | Msa0394010:intron | 20.0% |
| !! | TATAAAACTATTTAACTACG+TGG | + | chr3_2:8307188-8307207 | Msa0394010:intron | 20.0% |
| !! | ATACATTCTTATCTAACAAT+CGG | - | chr3_2:8307506-8307525 | None:intergenic | 20.0% |
| !!! | TCTAAAATATGTTTCAAAGA+TGG | - | chr3_2:8307635-8307654 | None:intergenic | 20.0% |
| !! | ATTTACATAACAAATTATGG+TGG | - | chr3_2:8307746-8307765 | None:intergenic | 20.0% |
| !! | CCAATTTACATAACAAATTA+TGG | - | chr3_2:8307749-8307768 | None:intergenic | 20.0% |
| !!! | CCATAATTTGTTATGTAAAT+TGG | + | chr3_2:8307746-8307765 | Msa0394010:intron | 20.0% |
| !!! | ATGAAACTTTTTTGAATAGA+AGG | + | chr3_2:8308056-8308075 | Msa0394010:intron | 20.0% |
| !! | GAATTTAAAGAGATGAAAAT+AGG | + | chr3_2:8308108-8308127 | Msa0394010:intron | 20.0% |
| !!! | TTGTTTAAGGTAATATCAAA+AGG | + | chr3_2:8308187-8308206 | Msa0394010:intron | 20.0% |
| !!! | AAACTGATATATTTTTCGAA+AGG | - | chr3_2:8308288-8308307 | None:intergenic | 20.0% |
| !!! | AGAATTTTATTTTTCTCAAG+AGG | - | chr3_2:8308361-8308380 | None:intergenic | 20.0% |
| !! | ATTACTATAATACTTATGCA+TGG | - | chr3_2:8308440-8308459 | None:intergenic | 20.0% |
| !!! | GTTTTATTTGTTTAATTCGA+AGG | + | chr3_2:8308758-8308777 | Msa0394010:intron | 20.0% |
| !! | CCGATAAATAAATAATACAA+TGG | - | chr3_2:8308877-8308896 | None:intergenic | 20.0% |
| !! | AGTATTTACACTAATCAATT+AGG | + | chr3_2:8308925-8308944 | Msa0394010:intron | 20.0% |
| !! | GTATTTACACTAATCAATTA+GGG | + | chr3_2:8308926-8308945 | Msa0394010:intron | 20.0% |
| !!! | TACATAAATTCTAAGAAACA+AGG | - | chr3_2:8309092-8309111 | None:intergenic | 20.0% |
| !!! | AGAATTTATGTATTTGTTGT+TGG | + | chr3_2:8309100-8309119 | Msa0394010:intron | 20.0% |
| !!! | TTCGTTTTTTTCAGATATCT+AGG | + | chr3_2:8305675-8305694 | Msa0394010:intron | 25.0% |
| ! | AATTATAGATAGATACCAGA+AGG | - | chr3_2:8305739-8305758 | None:intergenic | 25.0% |
| ! | TTACCTATAAAACACAAACA+TGG | + | chr3_2:8305926-8305945 | Msa0394010:intron | 25.0% |
| !!! | ATGTGCTTTAATTTTACTCT+TGG | + | chr3_2:8306433-8306452 | Msa0394010:intron | 25.0% |
| !!! | AAATTCTGAACTTTTTTCAG+AGG | + | chr3_2:8306842-8306861 | Msa0394010:intron | 25.0% |
| ! | AAAATGAAAAGAGAAAGAGT+CGG | - | chr3_2:8307118-8307137 | None:intergenic | 25.0% |
| !!! | TTTTCATTTTTCACTCACTA+GGG | + | chr3_2:8307128-8307147 | Msa0394010:intron | 25.0% |
| ! | TTAAAATGTCAATATGTCAC+AGG | + | chr3_2:8307223-8307242 | Msa0394010:intron | 25.0% |
| !! | AAATCCTAATTTTATGACCA+TGG | + | chr3_2:8307409-8307428 | Msa0394010:CDS | 25.0% |
| !! | ATTTTAGATGAGATAGAGAA+TGG | + | chr3_2:8307647-8307666 | Msa0394010:CDS | 25.0% |
| !! | AATTCTTTTCATCTAGATAC+TGG | + | chr3_2:8307786-8307805 | Msa0394010:intron | 25.0% |
| ! | AAAGCTTATAGAATGATAGT+TGG | - | chr3_2:8308245-8308264 | None:intergenic | 25.0% |
| !! | ACTATCATTCTATAAGCTTT+TGG | + | chr3_2:8308245-8308264 | Msa0394010:intron | 25.0% |
| !! | CTATCATTCTATAAGCTTTT+GGG | + | chr3_2:8308246-8308265 | Msa0394010:intron | 25.0% |
| !! | AACGTTGTGTTCTAATTTTA+GGG | - | chr3_2:8308522-8308541 | None:intergenic | 25.0% |
| !! | TAACGTTGTGTTCTAATTTT+AGG | - | chr3_2:8308523-8308542 | None:intergenic | 25.0% |
| !!! | CCAGTAAAACACAATTTTTT+GGG | + | chr3_2:8308653-8308672 | Msa0394010:intron | 25.0% |
| ! | TTAATCCATACATTGGAATT+TGG | - | chr3_2:8309506-8309525 | None:intergenic | 25.0% |
| !!! | GCATATTTTAATCCATACAT+TGG | - | chr3_2:8309513-8309532 | None:intergenic | 25.0% |
| !! | TTTAATTTCGCAACATCTAT+AGG | - | chr3_2:8309854-8309873 | None:intergenic | 25.0% |
| !! | TCAAGTTTCCATTTTCTTTT+TGG | - | chr3_2:8309960-8309979 | None:intergenic | 25.0% |
| ! | AAAAAGAAAATGGAAACTTG+AGG | + | chr3_2:8309959-8309978 | Msa0394010:three_prime_UTR | 25.0% |
| ! | AAAAGAAAATGGAAACTTGA+GGG | + | chr3_2:8309960-8309979 | Msa0394010:three_prime_UTR | 25.0% |
| !! | GAAAAAACAAAAGCATGATA+TGG | + | chr3_2:8309983-8310002 | Msa0394010:three_prime_UTR | 25.0% |
| !!! | TTAGTTTTTAACACAACGAT+GGG | - | chr3_2:8310025-8310044 | None:intergenic | 25.0% |
| !!! | TTTAGTTTTTAACACAACGA+TGG | - | chr3_2:8310026-8310045 | None:intergenic | 25.0% |
| !! | AGGAATATCCTTTTGAGAAT+TGG | - | chr3_2:8305719-8305738 | None:intergenic | 30.0% |
| ! | TGTCCATGTTTGTGTTTTAT+AGG | - | chr3_2:8305932-8305951 | None:intergenic | 30.0% |
| ! | GAAGTGTGTTATTGTTGTAT+TGG | + | chr3_2:8306072-8306091 | Msa0394010:intron | 30.0% |
| AACACACTTATCATGATATC+TGG | - | chr3_2:8306107-8306126 | None:intergenic | 30.0% | |
| ! | TAAGTGTGTTATTGTCATGT+TGG | + | chr3_2:8306117-8306136 | Msa0394010:intron | 30.0% |
| TAGACACTTATCCTTTACTT+AGG | + | chr3_2:8306278-8306297 | Msa0394010:intron | 30.0% | |
| !! | CTAATTTTGCTGTAGTCTTT+TGG | + | chr3_2:8306354-8306373 | Msa0394010:intron | 30.0% |
| !!! | ATTTTTTTAGACGAGAAAGC+TGG | + | chr3_2:8306458-8306477 | Msa0394010:intron | 30.0% |
| TCATTGCTGAGAAATCAAAA+GGG | - | chr3_2:8306580-8306599 | None:intergenic | 30.0% | |
| ! | TGCTATTTGCATTATATGTG+TGG | + | chr3_2:8306637-8306656 | Msa0394010:intron | 30.0% |
| !! | ACATGCATGTTTTTATAAGC+TGG | + | chr3_2:8306739-8306758 | Msa0394010:intron | 30.0% |
| !!! | TTCTGGGAATAGGTTTTATT+AGG | + | chr3_2:8306816-8306835 | Msa0394010:intron | 30.0% |
| !!! | TCTGGGAATAGGTTTTATTA+GGG | + | chr3_2:8306817-8306836 | Msa0394010:intron | 30.0% |
| TAAGTTAGGTGAAGAATTTG+AGG | + | chr3_2:8307066-8307085 | Msa0394010:intron | 30.0% | |
| AAATGAAAAGAGAAAGAGTC+GGG | - | chr3_2:8307117-8307136 | None:intergenic | 30.0% | |
| !! | CTTTTCATTTTTCACTCACT+AGG | + | chr3_2:8307127-8307146 | Msa0394010:intron | 30.0% |
| ! | ACTGCTGATTATCAAAGTTA+GGG | - | chr3_2:8307361-8307380 | None:intergenic | 30.0% |
| ! | TACTGCTGATTATCAAAGTT+AGG | - | chr3_2:8307362-8307381 | None:intergenic | 30.0% |
| ATTGGTAAAACTTTCAAGCA+TGG | - | chr3_2:8307561-8307580 | None:intergenic | 30.0% | |
| !!! | CATATTGACTTTTCGCAATA+TGG | + | chr3_2:8307980-8307999 | Msa0394010:intron | 30.0% |
| ACAAATTTGTAGTTGTGCTT+GGG | + | chr3_2:8308032-8308051 | Msa0394010:intron | 30.0% | |
| GTTTCTGCATGAATTGTTTA+AGG | + | chr3_2:8308174-8308193 | Msa0394010:intron | 30.0% | |
| ! | ATGGAATCATTTTCAAACCA+AGG | - | chr3_2:8308421-8308440 | None:intergenic | 30.0% |
| TTATAGTAATGTAGTCCACT+AGG | + | chr3_2:8308450-8308469 | Msa0394010:intron | 30.0% | |
| AGTTTATTGAAGCAAGTTCT+AGG | + | chr3_2:8308546-8308565 | Msa0394010:intron | 30.0% | |
| GGAATATAAGTCAATTGAGT+AGG | - | chr3_2:8308593-8308612 | None:intergenic | 30.0% | |
| !!! | GCCAGTAAAACACAATTTTT+TGG | + | chr3_2:8308652-8308671 | Msa0394010:intron | 30.0% |
| ! | CCCAAAAAATTGTGTTTTAC+TGG | - | chr3_2:8308656-8308675 | None:intergenic | 30.0% |
| ATTGCTCCTTTCTTTAGTAT+TGG | + | chr3_2:8308803-8308822 | Msa0394010:intron | 30.0% | |
| AGCAAACCAATACTAAAGAA+AGG | - | chr3_2:8308812-8308831 | None:intergenic | 30.0% | |
| ! | TTACATTTTGCTTGTGGTTA+CGG | + | chr3_2:8309013-8309032 | Msa0394010:CDS | 30.0% |
| ! | AGTACTTTCATTTAGAACCA+TGG | + | chr3_2:8309125-8309144 | Msa0394010:intron | 30.0% |
| GAAGAAAATCACAATGCTAT+AGG | - | chr3_2:8309203-8309222 | None:intergenic | 30.0% | |
| TAGAATATTAGATTCTAGCC+TGG | + | chr3_2:8309356-8309375 | Msa0394010:intron | 30.0% | |
| !! | GAATTTTGACGATTCTAGTT+TGG | + | chr3_2:8309475-8309494 | Msa0394010:intron | 30.0% |
| TTCTTCCAAATTCCAATGTA+TGG | + | chr3_2:8309498-8309517 | Msa0394010:intron | 30.0% | |
| AACAAGATGTAGGAAGAAAT+TGG | - | chr3_2:8309742-8309761 | None:intergenic | 30.0% | |
| !! | TTCCATTTTCTTTTTGGTGA+CGG | - | chr3_2:8309954-8309973 | None:intergenic | 30.0% |
| AAAGAAAATGGAAACTTGAG+GGG | + | chr3_2:8309961-8309980 | Msa0394010:three_prime_UTR | 30.0% | |
| TCAACGAAATGAAACCATTA+CGG | - | chr3_2:8310125-8310144 | None:intergenic | 30.0% | |
| !!! | GAGTGTTTTTGGTTTAAGAG+AGG | - | chr3_2:8305464-8305483 | None:intergenic | 35.0% |
| TCTTCTTCTTCTTCAGATTC+AGG | + | chr3_2:8305524-8305543 | Msa0394010:five_prime_UTR | 35.0% | |
| TCTCAAAAGGATATTCCTTC+TGG | + | chr3_2:8305721-8305740 | Msa0394010:CDS | 35.0% | |
| !!! | TATTGTCGTCTTGGTTTTGT+TGG | + | chr3_2:8306021-8306040 | Msa0394010:intron | 35.0% |
| GTAATATATGTAACACCGAC+AGG | - | chr3_2:8306151-8306170 | None:intergenic | 35.0% | |
| AAAATCGCATAGGAAGATAC+TGG | - | chr3_2:8306180-8306199 | None:intergenic | 35.0% | |
| GACACTAGTAAAAATCGCAT+AGG | - | chr3_2:8306190-8306209 | None:intergenic | 35.0% | |
| CTCATTGCTGAGAAATCAAA+AGG | - | chr3_2:8306581-8306600 | None:intergenic | 35.0% | |
| ! | TTTGATTTCTCAGCAATGAG+TGG | + | chr3_2:8306581-8306600 | Msa0394010:CDS | 35.0% |
| TGTCATCGTACAATGATTCT+GGG | + | chr3_2:8306800-8306819 | Msa0394010:intron | 35.0% | |
| AGCTTTCCATATCATGATAG+TGG | + | chr3_2:8306929-8306948 | Msa0394010:intron | 35.0% | |
| CTGATTCCACTATCATGATA+TGG | - | chr3_2:8306938-8306957 | None:intergenic | 35.0% | |
| AAATTGGCAGCAACTACAAA+AGG | - | chr3_2:8306961-8306980 | None:intergenic | 35.0% | |
| ! | TTTTGTAGTTGCTGCCAATT+TGG | + | chr3_2:8306960-8306979 | Msa0394010:intron | 35.0% |
| AGATCCATCATTCAATCAGA+TGG | + | chr3_2:8307283-8307302 | Msa0394010:CDS | 35.0% | |
| TCAGCCATGGTCATAAAATT+AGG | - | chr3_2:8307416-8307435 | None:intergenic | 35.0% | |
| ATGTATATGCTGTCTATCAC+AGG | + | chr3_2:8307520-8307539 | Msa0394010:intron | 35.0% | |
| TCAAGCTGAACTTTATTGGA+CGG | - | chr3_2:8307584-8307603 | None:intergenic | 35.0% | |
| CTCTTCAAGCTGAACTTTAT+TGG | - | chr3_2:8307588-8307607 | None:intergenic | 35.0% | |
| TTAGATGAGATAGAGAATGG+CGG | + | chr3_2:8307650-8307669 | Msa0394010:CDS | 35.0% | |
| ATAAACCTCATCATTACAGC+AGG | - | chr3_2:8307677-8307696 | None:intergenic | 35.0% | |
| ATCTAGATACTGGAATGATG+AGG | + | chr3_2:8307796-8307815 | Msa0394010:intron | 35.0% | |
| ! | CTGCTTCTTCTGAAAATTCT+GGG | + | chr3_2:8307876-8307895 | Msa0394010:CDS | 35.0% |
| GACAAATTTGTAGTTGTGCT+TGG | + | chr3_2:8308031-8308050 | Msa0394010:intron | 35.0% | |
| TGAACTAAACCTAACCACAT+CGG | - | chr3_2:8308084-8308103 | None:intergenic | 35.0% | |
| GTAATTAATTGTCTCGCAGT+TGG | + | chr3_2:8308139-8308158 | Msa0394010:intron | 35.0% | |
| TTCTATTCCAAACAACTCCT+TGG | + | chr3_2:8308401-8308420 | Msa0394010:intron | 35.0% | |
| TTTCAAACCAAGGAGTTGTT+TGG | - | chr3_2:8308411-8308430 | None:intergenic | 35.0% | |
| !!! | GCGGGTGTTTTATTTCTTTA+AGG | - | chr3_2:8308482-8308501 | None:intergenic | 35.0% |
| ACTTCCCTGAGTAACTTATA+AGG | + | chr3_2:8308617-8308636 | Msa0394010:intron | 35.0% | |
| TCCTCCTTATAAGTTACTCA+GGG | - | chr3_2:8308624-8308643 | None:intergenic | 35.0% | |
| ATCCTCCTTATAAGTTACTC+AGG | - | chr3_2:8308625-8308644 | None:intergenic | 35.0% | |
| TAAGGATGAAGAAGATTCAG+AGG | + | chr3_2:8308979-8308998 | Msa0394010:CDS | 35.0% | |
| AAGGATGAAGAAGATTCAGA+GGG | + | chr3_2:8308980-8308999 | Msa0394010:CDS | 35.0% | |
| ! | ACTGCTTTACATTTTGCTTG+TGG | + | chr3_2:8309007-8309026 | Msa0394010:CDS | 35.0% |
| ! | GCCTGGTTCTTGTATATATA+TGG | + | chr3_2:8309373-8309392 | Msa0394010:intron | 35.0% |
| GCCATATATATACAAGAACC+AGG | - | chr3_2:8309377-8309396 | None:intergenic | 35.0% | |
| ATATGCTCCTGATATATTCC+AGG | + | chr3_2:8309527-8309546 | Msa0394010:intron | 35.0% | |
| ATACCACTACAACAAGATGT+AGG | - | chr3_2:8309752-8309771 | None:intergenic | 35.0% | |
| ! | CATCTTGTTGTAGTGGTATT+TGG | + | chr3_2:8309753-8309772 | Msa0394010:intron | 35.0% |
| TTGCAGTACTCTGCAAAATA+TGG | + | chr3_2:8309817-8309836 | Msa0394010:intron | 35.0% | |
| AGTACTCTGCAAAATATGGA+TGG | + | chr3_2:8309821-8309840 | Msa0394010:intron | 35.0% | |
| GTACTCTGCAAAATATGGAT+GGG | + | chr3_2:8309822-8309841 | Msa0394010:intron | 35.0% | |
| AAACATCTTTCTCAAGAAGC+TGG | - | chr3_2:8309895-8309914 | None:intergenic | 35.0% | |
| ! | GATGTTTTCCTGTAATTGCA+AGG | + | chr3_2:8309908-8309927 | Msa0394010:exon | 35.0% |
| ! | GTTGTCGCAAAATTCTCTTT+TGG | + | chr3_2:8310168-8310187 | Msa0394010:three_prime_UTR | 35.0% |
| ATAATGAGATCCAGATCTGT+TGG | + | chr3_2:8310210-8310229 | Msa0394010:three_prime_UTR | 35.0% | |
| TAATGAGATCCAGATCTGTT+GGG | + | chr3_2:8310211-8310230 | Msa0394010:three_prime_UTR | 35.0% | |
| ! | GACTTTTCCAACTCTCACAA+GGG | + | chr3_2:8305405-8305424 | Msa0394010:five_prime_UTR | 40.0% |
| AGAAAAACCCTTGTGAGAGT+TGG | - | chr3_2:8305415-8305434 | None:intergenic | 40.0% | |
| !!! | AGAGTGTGAGAGAGTGTTTT+TGG | - | chr3_2:8305475-8305494 | None:intergenic | 40.0% |
| GAAGAAGAAGAAGAGCGATA+AGG | - | chr3_2:8305506-8305525 | None:intergenic | 40.0% | |
| TATCTAGGTTTCTTCGCTCA+TGG | + | chr3_2:8305690-8305709 | Msa0394010:intron | 40.0% | |
| CATGGCTTCCAATTCTCAAA+AGG | + | chr3_2:8305708-8305727 | Msa0394010:exon | 40.0% | |
| TGCTGAGAAATCAAAAGGGT+TGG | - | chr3_2:8306576-8306595 | None:intergenic | 40.0% | |
| TTTATAAGCTGGTCATGCGT+TGG | + | chr3_2:8306750-8306769 | Msa0394010:intron | 40.0% | |
| ACAGGCTGCAAAATTGCAAA+TGG | - | chr3_2:8306783-8306802 | None:intergenic | 40.0% | |
| CAGAATCATTGTACGATGAC+AGG | - | chr3_2:8306801-8306820 | None:intergenic | 40.0% | |
| CTGTCATCGTACAATGATTC+TGG | + | chr3_2:8306799-8306818 | Msa0394010:intron | 40.0% | |
| ! | CGTACAATGATTCTGGGAAT+AGG | + | chr3_2:8306806-8306825 | Msa0394010:intron | 40.0% |
| !! | TAAAGAACGCTTTTTGCCGA+CGG | - | chr3_2:8306877-8306896 | None:intergenic | 40.0% |
| ! | GGACTTTTGAACTCATCGTA+TGG | + | chr3_2:8307087-8307106 | Msa0394010:intron | 40.0% |
| GGATCCAAGTATCAAGGAAT+TGG | + | chr3_2:8307244-8307263 | Msa0394010:intron | 40.0% | |
| TCAGCCAATTCCTTGATACT+TGG | - | chr3_2:8307251-8307270 | None:intergenic | 40.0% | |
| TCAGCCATCTGATTGAATGA+TGG | - | chr3_2:8307290-8307309 | None:intergenic | 40.0% | |
| CAGCTTCAGAAAACTTTGCA+TGG | + | chr3_2:8307311-8307330 | Msa0394010:CDS | 40.0% | |
| CTTCAGAAAACTTTGCATGG+AGG | + | chr3_2:8307314-8307333 | Msa0394010:CDS | 40.0% | |
| GTATCTTTCATCCATGCAAC+AGG | + | chr3_2:8307379-8307398 | Msa0394010:CDS | 40.0% | |
| CTGAACTTTATTGGACGGAT+TGG | - | chr3_2:8307579-8307598 | None:intergenic | 40.0% | |
| AGTTCAGCTTGAAGAGAGAA+TGG | + | chr3_2:8307592-8307611 | Msa0394010:CDS | 40.0% | |
| TAGATACTGGAATGATGAGG+AGG | + | chr3_2:8307799-8307818 | Msa0394010:intron | 40.0% | |
| !!! | TGAGGAGGTTTTGAAGAAGT+TGG | + | chr3_2:8307814-8307833 | Msa0394010:CDS | 40.0% |
| !!! | GAGGAGGTTTTGAAGAAGTT+GGG | + | chr3_2:8307815-8307834 | Msa0394010:CDS | 40.0% |
| ! | GCTGCTTCTTCTGAAAATTC+TGG | + | chr3_2:8307875-8307894 | Msa0394010:CDS | 40.0% |
| CCAGATGAAACAGAAGATGT+GGG | + | chr3_2:8307899-8307918 | Msa0394010:CDS | 40.0% | |
| GTTCATCATACTGCTAGTGT+TGG | + | chr3_2:8307941-8307960 | Msa0394010:CDS | 40.0% | |
| !! | AGCTTTTGGGAGCTTCATAT+TGG | + | chr3_2:8308259-8308278 | Msa0394010:intron | 40.0% |
| !! | GCTTTTGGGAGCTTCATATT+GGG | + | chr3_2:8308260-8308279 | Msa0394010:intron | 40.0% |
| AGTAATGTAGTCCACTAGGT+TGG | + | chr3_2:8308454-8308473 | Msa0394010:intron | 40.0% | |
| !! | TCTTTAAGGTACCAACCTAG+TGG | - | chr3_2:8308468-8308487 | None:intergenic | 40.0% |
| GCAAAAAAAACTTCTGCAGC+GGG | - | chr3_2:8308500-8308519 | None:intergenic | 40.0% | |
| GGCAAAAAAAACTTCTGCAG+CGG | - | chr3_2:8308501-8308520 | None:intergenic | 40.0% | |
| TCCCTGAGTAACTTATAAGG+AGG | + | chr3_2:8308620-8308639 | Msa0394010:intron | 40.0% | |
| TTGTGTATGCCCTTGTGTAA+AGG | + | chr3_2:8308722-8308741 | Msa0394010:intron | 40.0% | |
| AGCATGCAACCTTTACACAA+GGG | - | chr3_2:8308734-8308753 | None:intergenic | 40.0% | |
| AAGCATGCAACCTTTACACA+AGG | - | chr3_2:8308735-8308754 | None:intergenic | 40.0% | |
| TCTTCACTTGCTTTACACCA+TGG | - | chr3_2:8309145-8309164 | None:intergenic | 40.0% | |
| AGCAAGTGAAGAATGTAACG+AGG | + | chr3_2:8309153-8309172 | Msa0394010:intron | 40.0% | |
| CGGACAGTATTCATAATGCT+TGG | + | chr3_2:8309237-8309256 | Msa0394010:intron | 40.0% | |
| CAGTAGTGTCATCATTGAGT+CGG | - | chr3_2:8309307-8309326 | None:intergenic | 40.0% | |
| GACTCAATGATGACACTACT+GGG | + | chr3_2:8309306-8309325 | Msa0394010:intron | 40.0% | |
| ACAATGCTGCTATGCTCATT+TGG | + | chr3_2:8309330-8309349 | Msa0394010:intron | 40.0% | |
| CACTTCACCTGGAATATATC+AGG | - | chr3_2:8309537-8309556 | None:intergenic | 40.0% | |
| TGGAGCAAAAGTAGATGCTT+TGG | + | chr3_2:8309578-8309597 | Msa0394010:CDS | 40.0% | |
| CTTCATTATGCAGCAGGTTA+TGG | + | chr3_2:8309621-8309640 | Msa0394010:CDS | 40.0% | |
| GAAATTGGCATGAACAGTTG+AGG | - | chr3_2:8309727-8309746 | None:intergenic | 40.0% | |
| ! | CTTCCTACATCTTGTTGTAG+TGG | + | chr3_2:8309746-8309765 | Msa0394010:intron | 40.0% |
| TAATTGCAAGGCATGCATGA+TGG | + | chr3_2:8309920-8309939 | Msa0394010:exon | 40.0% | |
| TGCCGTCACCAAAAAGAAAA+TGG | + | chr3_2:8309949-8309968 | Msa0394010:three_prime_UTR | 40.0% | |
| TATCAAGATTAGCGCCGTAA+TGG | + | chr3_2:8310108-8310127 | Msa0394010:three_prime_UTR | 40.0% | |
| ! | GGACTTTTCCAACTCTCACA+AGG | + | chr3_2:8305404-8305423 | Msa0394010:five_prime_UTR | 45.0% |
| !! | CACAGGTGTTATTGTCGTCT+TGG | + | chr3_2:8306012-8306031 | Msa0394010:intron | 45.0% |
| !!! | CGTCTTGGTTTTGTTGGTGT+TGG | + | chr3_2:8306027-8306046 | Msa0394010:intron | 45.0% |
| CGTGCAGTACACCTAAGTAA+AGG | - | chr3_2:8306292-8306311 | None:intergenic | 45.0% | |
| ! | GAGAAATCAAAAGGGTTGGC+TGG | - | chr3_2:8306572-8306591 | None:intergenic | 45.0% |
| !! | AAAGAACGCTTTTTGCCGAC+GGG | - | chr3_2:8306876-8306895 | None:intergenic | 45.0% |
| GTCACAGGATCCAAGTATCA+AGG | + | chr3_2:8307238-8307257 | Msa0394010:intron | 45.0% | |
| TTCATCCATGCAACAGGTCA+TGG | + | chr3_2:8307385-8307404 | Msa0394010:CDS | 45.0% | |
| ATTTGCCATGACCTGTTGCA+TGG | - | chr3_2:8307393-8307412 | None:intergenic | 45.0% | |
| CAAGCATGGAAGACATCGAT+GGG | - | chr3_2:8307547-8307566 | None:intergenic | 45.0% | |
| TCAAGCATGGAAGACATCGA+TGG | - | chr3_2:8307548-8307567 | None:intergenic | 45.0% | |
| AGAGAGAATGGCACGCATAA+AGG | + | chr3_2:8307604-8307623 | Msa0394010:CDS | 45.0% | |
| !! | AAGAAGTTGGGACTAGCCAT+GGG | + | chr3_2:8307827-8307846 | Msa0394010:CDS | 45.0% |
| GCCAGATGAAACAGAAGATG+TGG | + | chr3_2:8307898-8307917 | Msa0394010:CDS | 45.0% | |
| CCCACATCTTCTGTTTCATC+TGG | - | chr3_2:8307902-8307921 | None:intergenic | 45.0% | |
| !! | TGCTAGTGTTGGTGACATTG+AGG | + | chr3_2:8307952-8307971 | Msa0394010:CDS | 45.0% |
| !! | TTGAATAGAAGGTGCCGATG+TGG | + | chr3_2:8308067-8308086 | Msa0394010:intron | 45.0% |
| AAGTTACTCAGGGAAGTCTG+TGG | - | chr3_2:8308614-8308633 | None:intergenic | 45.0% | |
| ! | CAATGGTGGAACTTCACAAC+AGG | - | chr3_2:8308860-8308879 | None:intergenic | 45.0% |
| TTCATCCTTATCAGCACCAG+AGG | - | chr3_2:8308969-8308988 | None:intergenic | 45.0% | |
| GTGAAGAATGTAACGAGGCT+CGG | + | chr3_2:8309158-8309177 | Msa0394010:intron | 45.0% | |
| TGAAGAATGTAACGAGGCTC+GGG | + | chr3_2:8309159-8309178 | Msa0394010:intron | 45.0% | |
| TTCTTCCACCACAGTGAACT+CGG | + | chr3_2:8309217-8309236 | Msa0394010:intron | 45.0% | |
| AATACTGTCCGAGTTCACTG+TGG | - | chr3_2:8309228-8309247 | None:intergenic | 45.0% | |
| CGACTCAATGATGACACTAC+TGG | + | chr3_2:8309305-8309324 | Msa0394010:intron | 45.0% | |
| TCTAACAAGCCCTCTCTAGA+AGG | - | chr3_2:8309431-8309450 | None:intergenic | 45.0% | |
| ACAGCTCTTCATTATGCAGC+AGG | + | chr3_2:8309615-8309634 | Msa0394010:CDS | 45.0% | |
| ATTATGCAGCAGGTTATGGC+AGG | + | chr3_2:8309625-8309644 | Msa0394010:CDS | 45.0% | |
| TTATGGCAGGAAGGAATGTG+TGG | + | chr3_2:8309638-8309657 | Msa0394010:CDS | 45.0% | |
| CATCTTTCTCAAGAAGCTGG+AGG | - | chr3_2:8309892-8309911 | None:intergenic | 45.0% | |
| CATGCATGCCTTGCAATTAC+AGG | - | chr3_2:8309919-8309938 | None:intergenic | 45.0% | |
| ATATGTAACACCGACAGGCG+TGG | - | chr3_2:8306146-8306165 | None:intergenic | 50.0% | |
| ! | AGACGAGAAAGCTGGTTCAG+CGG | + | chr3_2:8306466-8306485 | Msa0394010:intron | 50.0% |
| AGCTGGTCATGCGTTGGATT+TGG | + | chr3_2:8306756-8306775 | Msa0394010:intron | 50.0% | |
| CCTGCATCAATGCATTACCC+AGG | - | chr3_2:8307442-8307461 | None:intergenic | 50.0% | |
| ! | CCTGGGTAATGCATTGATGC+AGG | + | chr3_2:8307439-8307458 | Msa0394010:CDS | 50.0% |
| !! | GAAGAAGTTGGGACTAGCCA+TGG | + | chr3_2:8307826-8307845 | Msa0394010:CDS | 50.0% |
| !! | TAGAAGGTGCCGATGTGGTT+AGG | + | chr3_2:8308072-8308091 | Msa0394010:intron | 50.0% |
| ! | TTTTGCTTGTGGTTACGGCG+AGG | + | chr3_2:8309018-8309037 | Msa0394010:CDS | 50.0% |
| AGAAGGAGGAGAGGGCTAAA+TGG | - | chr3_2:8309414-8309433 | None:intergenic | 50.0% | |
| ! | AACAAGCCCTCTCTAGAAGG+AGG | - | chr3_2:8309428-8309447 | None:intergenic | 50.0% |
| !! | CTACTTTTGCTCCAGCCTCA+AGG | - | chr3_2:8309572-8309591 | None:intergenic | 50.0% |
| ! | GTGGCCTTGCTCCTTGAAAA+CGG | + | chr3_2:8309657-8309676 | Msa0394010:CDS | 50.0% |
| !! | AGCACCGTTTTCAAGGAGCA+AGG | - | chr3_2:8309664-8309683 | None:intergenic | 50.0% |
| ! | ACACTGCAGCACCGTTTTCA+AGG | - | chr3_2:8309671-8309690 | None:intergenic | 50.0% |
| ATGTTGGACACCACGCCTGT+CGG | + | chr3_2:8306133-8306152 | Msa0394010:intron | 55.0% | |
| ACATCCTCGAACGCAACTCC+CGG | + | chr3_2:8306512-8306531 | Msa0394010:CDS | 55.0% | |
| ACCAGTCCCAGGTGGAAAAC+CGG | - | chr3_2:8306546-8306565 | None:intergenic | 55.0% | |
| TTGGCTGGAAAACCAGTCCC+AGG | - | chr3_2:8306557-8306576 | None:intergenic | 55.0% | |
| TCAGAGGTCTTCACACCCGT+CGG | + | chr3_2:8306858-8306877 | Msa0394010:intron | 55.0% | |
| !! | TTTGCATGGAGGAGCACCAC+AGG | + | chr3_2:8307325-8307344 | Msa0394010:CDS | 55.0% |
| TTAGGGAGACCACCATCCTG+TGG | - | chr3_2:8307344-8307363 | None:intergenic | 55.0% | |
| GCGGTCCTGCTGTAATGATG+AGG | + | chr3_2:8307669-8307688 | Msa0394010:CDS | 55.0% | |
| AGAGGTTGGAGGAATGCCCA+TGG | - | chr3_2:8307846-8307865 | None:intergenic | 55.0% | |
| ATGGGCATTCCTCCAACCTC+TGG | + | chr3_2:8307845-8307864 | Msa0394010:CDS | 55.0% | |
| AGAAGCAGCTGCATCTCCAG+AGG | - | chr3_2:8307864-8307883 | None:intergenic | 55.0% | |
| ! | TTGAAAGCTGCGCTAGCCTC+TGG | + | chr3_2:8308950-8308969 | Msa0394010:CDS | 55.0% |
| !! | GCTAGCCTCTGGTGCTGATA+AGG | + | chr3_2:8308961-8308980 | Msa0394010:CDS | 55.0% |
| ACTGTCCGAGTTCACTGTGG+TGG | - | chr3_2:8309225-8309244 | None:intergenic | 55.0% | |
| ! | CCCTCTCTAGAAGGAGGAGA+GGG | - | chr3_2:8309422-8309441 | None:intergenic | 55.0% |
| ! | CCCTCTCCTCCTTCTAGAGA+GGG | + | chr3_2:8309419-8309438 | Msa0394010:intron | 55.0% |
| TGCAGCAGGTTATGGCAGGA+AGG | + | chr3_2:8309629-8309648 | Msa0394010:CDS | 55.0% | |
| TGGAAAACCGGTCCCAGGTC+CGG | - | chr3_2:8306534-8306553 | None:intergenic | 60.0% | |
| !! | CTGGGACCGGTTTTCCACCT+GGG | + | chr3_2:8306537-8306556 | Msa0394010:CDS | 60.0% |
| !! | ACCGGTTTTCCACCTGGGAC+TGG | + | chr3_2:8306542-8306561 | Msa0394010:CDS | 60.0% |
| GCTGGAAAACCAGTCCCAGG+TGG | - | chr3_2:8306554-8306573 | None:intergenic | 60.0% | |
| !! | CATGGAGGAGCACCACAGGA+TGG | + | chr3_2:8307329-8307348 | Msa0394010:CDS | 60.0% |
| TATGACCATGGCTGAGCGCC+TGG | + | chr3_2:8307421-8307440 | Msa0394010:CDS | 60.0% | |
| ATGACCATGGCTGAGCGCCT+GGG | + | chr3_2:8307422-8307441 | Msa0394010:CDS | 60.0% | |
| ATTACCCAGGCGCTCAGCCA+TGG | - | chr3_2:8307429-8307448 | None:intergenic | 60.0% | |
| GCTGCATCTCCAGAGGTTGG+AGG | - | chr3_2:8307857-8307876 | None:intergenic | 60.0% | |
| GCAGCTGCATCTCCAGAGGT+TGG | - | chr3_2:8307860-8307879 | None:intergenic | 60.0% | |
| ! | GCCCTCTCCTCCTTCTAGAG+AGG | + | chr3_2:8309418-8309437 | Msa0394010:intron | 60.0% |
| ! | GCCCTCTCTAGAAGGAGGAG+AGG | - | chr3_2:8309423-8309442 | None:intergenic | 60.0% |
| GAGCTTGCGCACACTTCACC+TGG | - | chr3_2:8309548-8309567 | None:intergenic | 60.0% | |
| GTGTGCGCAAGCTCTCCTTG+AGG | + | chr3_2:8309554-8309573 | Msa0394010:CDS | 60.0% | |
| AGGTCCGGGAGTTGCGTTCG+AGG | - | chr3_2:8306519-8306538 | None:intergenic | 65.0% | |
| TCGAACGCAACTCCCGGACC+TGG | + | chr3_2:8306518-8306537 | Msa0394010:CDS | 65.0% | |
| CGAACGCAACTCCCGGACCT+GGG | + | chr3_2:8306519-8306538 | Msa0394010:CDS | 65.0% | |
| GGAAAACCGGTCCCAGGTCC+GGG | - | chr3_2:8306533-8306552 | None:intergenic | 65.0% | |
| CCAGGTGGAAAACCGGTCCC+AGG | - | chr3_2:8306539-8306558 | None:intergenic | 65.0% | |
| !! | CCTGGGACCGGTTTTCCACC+TGG | + | chr3_2:8306536-8306555 | Msa0394010:CDS | 65.0% |
| !! | GGAGGAGCACCACAGGATGG+TGG | + | chr3_2:8307332-8307351 | Msa0394010:CDS | 65.0% |
| GCGCAAGCTCTCCTTGAGGC+TGG | + | chr3_2:8309558-8309577 | Msa0394010:CDS | 65.0% | |
| GCAACTCCCGGACCTGGGAC+CGG | + | chr3_2:8306524-8306543 | Msa0394010:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 8305403 | 8310239 | 8305403 | ID=Msa0394010;Name=Msa0394010 |
| chr3_2 | mRNA | 8305403 | 8310239 | 8305403 | ID=Msa0394010-mRNA-1;Parent=Msa0394010;Name=Msa0394010-mRNA-1;_AED=0.07;_eAED=0.07;_QI=155|0.87|0.88|1|0.87|0.88|9|317|349 |
| chr3_2 | exon | 8305403 | 8305545 | 8305403 | ID=Msa0394010-mRNA-1:exon:2166;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8305697 | 8305742 | 8305697 | ID=Msa0394010-mRNA-1:exon:2167;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8306468 | 8306613 | 8306468 | ID=Msa0394010-mRNA-1:exon:2168;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8307245 | 8307460 | 8307245 | ID=Msa0394010-mRNA-1:exon:2169;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8307542 | 8307690 | 8307542 | ID=Msa0394010-mRNA-1:exon:2170;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8307802 | 8307973 | 8307802 | ID=Msa0394010-mRNA-1:exon:2171;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8308947 | 8309039 | 8308947 | ID=Msa0394010-mRNA-1:exon:2172;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8309549 | 8309688 | 8309549 | ID=Msa0394010-mRNA-1:exon:2173;Parent=Msa0394010-mRNA-1 |
| chr3_2 | exon | 8309823 | 8310239 | 8309823 | ID=Msa0394010-mRNA-1:exon:2174;Parent=Msa0394010-mRNA-1 |
| chr3_2 | five_prime_UTR | 8305403 | 8305545 | 8305403 | ID=Msa0394010-mRNA-1:five_prime_utr;Parent=Msa0394010-mRNA-1 |
| chr3_2 | five_prime_UTR | 8305697 | 8305708 | 8305697 | ID=Msa0394010-mRNA-1:five_prime_utr;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8305709 | 8305742 | 8305709 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8306468 | 8306613 | 8306468 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8307245 | 8307460 | 8307245 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8307542 | 8307690 | 8307542 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8307802 | 8307973 | 8307802 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8308947 | 8309039 | 8308947 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8309549 | 8309688 | 8309549 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | CDS | 8309823 | 8309922 | 8309823 | ID=Msa0394010-mRNA-1:cds;Parent=Msa0394010-mRNA-1 |
| chr3_2 | three_prime_UTR | 8309923 | 8310239 | 8309923 | ID=Msa0394010-mRNA-1:three_prime_utr;Parent=Msa0394010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
