AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0678820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678820 MtrunA17_Chr4g0024501 86.170 282 36 2 71 351 220 499 6.32e-164 468
Msa0678820 MtrunA17_Chr4g0024501 96.667 120 4 0 1 120 1 120 2.70e-75 241
Msa0678820 MtrunA17_Chr2g0322671 86.134 238 33 0 115 352 251 488 2.81e-143 415
Msa0678820 MtrunA17_Chr2g0322671 72.973 111 16 2 12 120 10 108 1.58e-42 154
Msa0678820 MtrunA17_Chr2g0288281 68.067 238 76 0 115 352 141 378 4.58e-115 339
Msa0678820 MtrunA17_Chr7g0254531 42.816 348 177 7 14 351 41 376 6.04e-85 262
Msa0678820 MtrunA17_Chr8g0368001 53.879 232 107 0 119 350 252 483 1.82e-83 262
Msa0678820 MtrunA17_Chr7g0254521 55.702 228 101 0 124 351 238 465 2.06e-82 259
Msa0678820 MtrunA17_Chr7g0254511 54.783 230 104 0 123 352 235 464 8.18e-82 257
Msa0678820 MtrunA17_Chr7g0254501 54.348 230 105 0 123 352 63 292 1.65e-81 251
Msa0678820 MtrunA17_Chr5g0412541 55.217 230 102 1 124 352 243 472 1.24e-80 254
Msa0678820 MtrunA17_Chr3g0132531 55.128 234 96 3 124 352 253 482 6.72e-79 250
Msa0678820 MtrunA17_Chr5g0442331 51.477 237 115 0 117 353 247 483 1.94e-78 249
Msa0678820 MtrunA17_Chr5g0442331 35.577 104 65 2 17 120 1 102 5.28e-12 67.0
Msa0678820 MtrunA17_Chr6g0460541 51.408 284 131 4 71 352 102 380 3.17e-78 245
Msa0678820 MtrunA17_Chr5g0412771 54.348 230 105 0 121 350 260 489 4.12e-78 248
Msa0678820 MtrunA17_Chr5g0412571 42.029 345 173 8 22 352 86 417 9.81e-77 242
Msa0678820 MtrunA17_Chr1g0154441 52.193 228 109 0 123 350 148 375 1.34e-76 241
Msa0678820 MtrunA17_Chr7g0248051 51.965 229 110 0 124 352 276 504 1.01e-74 239
Msa0678820 MtrunA17_Chr1g0202761 48.908 229 117 0 124 352 249 477 3.04e-67 219
Msa0678820 MtrunA17_Chr6g0483351 44.898 245 133 1 110 352 136 380 1.06e-62 206
Msa0678820 MtrunA17_Chr6g0468521 41.739 230 134 0 124 353 236 465 1.49e-62 207
Msa0678820 MtrunA17_Chr7g0251331 42.308 286 161 3 68 350 176 460 6.22e-62 205
Msa0678820 MtrunA17_Chr6g0460521 55.224 201 90 0 152 352 1 201 1.81e-61 196
Msa0678820 MtrunA17_Chr6g0483361 44.082 245 135 1 110 352 219 463 2.64e-61 203
Msa0678820 MtrunA17_Chr6g0483381 45.378 238 128 1 117 352 228 465 3.27e-60 201
Msa0678820 MtrunA17_Chr6g0449061 42.188 256 148 0 95 350 210 465 1.17e-59 199
Msa0678820 MtrunA17_Chr8g0392601 41.152 243 143 0 110 352 206 448 7.28e-59 197
Msa0678820 MtrunA17_Chr6g0483341 40.598 234 139 0 117 350 243 476 4.08e-58 196
Msa0678820 MtrunA17_Chr6g0468531 40.611 229 136 0 124 352 237 465 2.30e-56 191
Msa0678820 MtrunA17_Chr6g0477961 42.735 234 132 1 121 352 232 465 1.11e-55 189
Msa0678820 MtrunA17_Chr1g0208881 38.023 263 158 2 92 350 198 459 1.46e-55 188
Msa0678820 MtrunA17_Chr6g0483331 40.435 230 137 0 121 350 218 447 4.91e-55 187
Msa0678820 MtrunA17_Chr1g0208791 41.850 227 132 0 124 350 251 477 8.75e-55 187
Msa0678820 MtrunA17_Chr1g0208821 38.697 261 157 1 92 349 214 474 1.06e-53 184
Msa0678820 MtrunA17_Chr6g0483161 38.272 243 129 3 110 351 138 360 1.10e-52 178
Msa0678820 MtrunA17_Chr2g0317221 38.655 238 146 0 112 349 147 384 4.14e-52 178
Msa0678820 MtrunA17_Chr2g0317131 38.655 238 146 0 112 349 239 476 1.13e-51 178
Msa0678820 MtrunA17_Chr2g0317151 39.914 233 140 0 117 349 234 466 3.15e-51 177
Msa0678820 MtrunA17_Chr2g0317161 38.197 233 144 0 117 349 232 464 3.76e-47 166
Msa0678820 MtrunA17_Chr6g0468511 40.351 228 136 0 125 352 237 464 3.87e-47 166
Msa0678820 MtrunA17_Chr7g0251321 36.719 256 143 1 95 350 121 357 4.65e-46 161
Msa0678820 MtrunA17_Chr1g0208891 36.882 263 161 2 92 350 197 458 1.71e-45 162
Msa0678820 MtrunA17_Chr2g0317171 36.910 233 147 0 117 349 238 470 1.31e-44 159
Msa0678820 MtrunA17_Chr8g0364751 48.485 165 85 0 189 353 6 170 1.07e-42 146
Msa0678820 MtrunA17_Chr6g0483264 40.102 197 116 2 155 350 1 196 1.19e-38 137
Msa0678820 MtrunA17_Chr5g0440661 39.111 225 70 5 117 339 143 302 2.60e-34 128
Msa0678820 MtrunA17_Chr5g0397991 28.947 228 162 0 125 352 274 501 5.09e-32 125
Msa0678820 MtrunA17_Chr1g0203791 30.531 226 157 0 125 350 273 498 6.87e-31 122
Msa0678820 MtrunA17_Chr2g0288291 56.522 92 40 0 29 120 13 104 4.64e-30 111
Msa0678820 MtrunA17_Chr8g0389801 29.771 262 181 1 92 350 194 455 7.33e-30 119
Msa0678820 MtrunA17_Chr6g0467321 33.023 215 143 1 137 350 271 485 1.59e-29 119
Msa0678820 MtrunA17_Chr6g0473701 28.634 227 160 2 125 350 337 562 6.55e-29 117
Msa0678820 MtrunA17_Chr6g0483221 36.842 152 96 0 202 353 6 157 4.34e-28 108
Msa0678820 MtrunA17_Chr3g0140931 30.131 229 158 2 125 352 260 487 6.37e-28 114
Msa0678820 MtrunA17_Chr6g0487091 28.761 226 161 0 127 352 161 386 1.79e-27 111
Msa0678820 MtrunA17_Chr5g0428251 27.193 228 166 0 125 352 264 491 2.55e-27 112
Msa0678820 MtrunA17_Chr3g0132541 32.314 229 100 4 124 352 248 421 7.70e-27 110
Msa0678820 MtrunA17_Chr4g0013031 24.314 255 187 2 104 352 250 504 2.29e-24 103
Msa0678820 MtrunA17_Chr6g0483261 36.667 150 93 2 202 350 6 154 1.82e-22 93.2
Msa0678820 MtrunA17_Chr2g0295631 28.230 209 150 0 142 350 262 470 4.14e-21 94.4
Msa0678820 MtrunA17_Chr5g0398571 30.222 225 155 1 128 350 57 281 7.35e-21 91.7
Msa0678820 MtrunA17_Chr8g0364761 52.778 72 33 1 117 187 254 325 5.66e-16 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0678820 AT3G21690.1 76.471 238 56 0 115 352 250 487 3.93e-129 379
Msa0678820 AT3G21690.1 75.610 82 20 0 39 120 26 107 9.13e-33 128
Msa0678820 AT1G61890.1 68.644 236 74 0 117 352 247 482 1.32e-111 334
Msa0678820 AT1G61890.1 53.488 86 40 0 35 120 17 102 8.43e-22 96.7
Msa0678820 AT1G61890.2 68.644 236 74 0 117 352 247 482 2.58e-111 333
Msa0678820 AT1G61890.2 53.488 86 40 0 35 120 17 102 6.49e-22 97.1
Msa0678820 AT1G11670.1 67.373 236 77 0 117 352 250 485 3.11e-110 331
Msa0678820 AT1G11670.1 52.326 86 41 0 35 120 20 105 1.39e-21 96.3
Msa0678820 AT4G21903.3 63.636 242 87 1 111 352 138 378 4.95e-105 314
Msa0678820 AT4G21910.3 63.636 242 87 1 111 352 249 489 6.06e-104 315
Msa0678820 AT4G21910.3 33.333 120 67 2 1 120 3 109 4.01e-14 73.9
Msa0678820 AT4G21910.1 63.636 242 87 1 111 352 249 489 6.06e-104 315
Msa0678820 AT4G21910.1 33.333 120 67 2 1 120 3 109 4.01e-14 73.9
Msa0678820 AT4G21903.1 63.636 242 87 1 111 352 247 487 6.40e-104 315
Msa0678820 AT4G21910.2 63.636 242 87 1 111 352 251 491 6.70e-104 315
Msa0678820 AT4G21910.2 41.593 113 51 3 10 120 12 111 1.30e-16 81.3
Msa0678820 AT4G21910.4 63.636 242 87 1 111 352 251 491 6.70e-104 315
Msa0678820 AT4G21910.4 41.593 113 51 3 10 120 12 111 1.30e-16 81.3
Msa0678820 AT4G21903.2 63.900 241 86 1 111 351 247 486 7.74e-104 315
Msa0678820 AT1G61890.3 68.780 205 64 0 117 321 247 451 1.68e-93 287
Msa0678820 AT1G61890.3 53.488 86 40 0 35 120 17 102 5.35e-22 97.1
Msa0678820 AT3G59030.1 53.814 236 109 0 117 352 251 486 1.07e-80 255
Msa0678820 AT1G47530.2 52.991 234 110 0 119 352 144 377 2.58e-79 248
Msa0678820 AT3G26590.2 50.862 232 114 0 119 350 144 375 8.17e-79 247
Msa0678820 AT1G47530.1 53.913 230 106 0 123 352 240 469 1.44e-78 249
Msa0678820 AT1G33110.1 54.386 228 104 0 124 351 242 469 5.05e-78 248
Msa0678820 AT3G26590.1 50.862 232 114 0 119 350 246 477 7.85e-78 248
Msa0678820 AT5G38030.1 52.155 232 111 0 119 350 246 477 1.11e-77 247
Msa0678820 AT1G33100.1 53.947 228 105 0 124 351 239 466 3.85e-77 245
Msa0678820 AT1G23300.1 52.000 225 108 0 126 350 252 476 2.91e-76 244
Msa0678820 AT4G00350.1 50.655 229 113 0 124 352 293 521 4.35e-75 241
Msa0678820 AT5G65380.1 51.082 231 112 1 124 353 243 473 5.06e-75 240
Msa0678820 AT1G33090.1 54.113 231 106 0 121 351 239 469 2.43e-74 238
Msa0678820 AT5G10420.1 52.066 242 113 2 112 350 230 471 2.49e-74 238
Msa0678820 AT5G44050.1 46.377 276 140 3 78 352 207 475 3.15e-73 235
Msa0678820 AT1G12950.1 50.661 227 112 0 124 350 273 499 3.70e-72 233
Msa0678820 AT1G33080.1 51.754 228 110 0 124 351 242 469 6.65e-72 232
Msa0678820 AT1G33080.2 51.754 228 110 0 124 351 242 469 1.39e-71 231
Msa0678820 AT3G03620.2 48.472 229 118 0 124 352 243 471 1.49e-67 221
Msa0678820 AT3G03620.1 48.472 229 118 0 124 352 243 471 1.49e-67 221
Msa0678820 AT5G17700.2 47.391 230 121 0 124 353 240 469 3.71e-66 217
Msa0678820 AT5G17700.1 47.391 230 121 0 124 353 240 469 3.71e-66 217
Msa0678820 AT1G15150.2 38.372 258 159 0 95 352 93 350 1.17e-56 189
Msa0678820 AT1G15170.2 38.636 264 159 2 92 352 87 350 2.03e-56 188
Msa0678820 AT1G15150.1 38.372 258 159 0 95 352 209 466 1.53e-55 189
Msa0678820 AT1G15170.1 38.931 262 157 2 92 350 206 467 1.62e-55 189
Msa0678820 AT1G73700.1 44.033 243 136 0 110 352 217 459 2.34e-55 188
Msa0678820 AT4G25640.1 47.162 229 121 0 124 352 239 467 1.48e-54 186
Msa0678820 AT2G34360.1 41.803 244 134 2 110 352 220 456 1.87e-54 186
Msa0678820 AT4G25640.2 47.162 229 121 0 124 352 239 467 2.31e-54 186
Msa0678820 AT5G52450.1 43.621 243 137 0 110 352 219 461 2.35e-54 186
Msa0678820 AT1G15160.1 38.362 232 143 0 121 352 235 466 4.47e-53 182
Msa0678820 AT2G04070.1 34.146 328 198 4 39 352 139 462 4.87e-52 179
Msa0678820 AT1G66780.1 41.410 227 133 0 125 351 243 469 6.45e-52 179
Msa0678820 AT3G23560.1 36.525 282 173 1 74 349 190 471 1.54e-51 178
Msa0678820 AT3G59030.2 54.217 166 76 0 117 282 251 416 2.04e-51 176
Msa0678820 AT1G71140.1 37.553 237 148 0 117 353 226 462 2.11e-50 175
Msa0678820 AT1G15180.1 38.931 262 157 2 92 350 207 468 2.67e-50 175
Msa0678820 AT2G04040.1 39.916 238 141 2 116 352 226 462 3.73e-50 174
Msa0678820 AT2G04080.2 39.224 232 139 2 122 352 232 462 4.60e-50 174
Msa0678820 AT2G04080.1 38.961 231 139 2 123 352 233 462 2.44e-49 172
Msa0678820 AT3G23550.1 38.197 233 144 0 117 349 231 463 5.69e-49 171
Msa0678820 AT1G33110.2 54.321 162 74 0 124 285 242 403 1.74e-48 168
Msa0678820 AT1G66760.3 38.340 253 152 1 103 351 82 334 2.09e-48 166
Msa0678820 AT1G66760.1 38.340 253 152 1 103 351 210 462 1.92e-47 167
Msa0678820 AT1G66760.2 38.095 252 152 1 103 350 210 461 6.96e-47 166
Msa0678820 AT2G04050.1 38.559 236 145 0 117 352 227 462 2.00e-46 164
Msa0678820 AT2G04100.2 39.662 237 141 2 117 352 230 465 4.28e-46 164
Msa0678820 AT4G25640.3 46.939 196 104 0 124 319 239 434 1.78e-45 162
Msa0678820 AT2G04100.1 39.574 235 140 2 117 350 230 463 2.21e-45 162
Msa0678820 AT1G64820.1 40.187 214 128 0 137 350 249 462 8.40e-45 160
Msa0678820 AT2G04090.1 37.872 235 144 2 117 350 230 463 1.82e-41 151
Msa0678820 AT2G34360.2 33.745 243 113 1 110 352 220 414 2.21e-37 139
Msa0678820 AT5G17700.3 43.827 162 91 0 124 285 240 401 2.53e-37 139
Msa0678820 AT1G15180.2 37.113 194 119 2 92 282 87 280 6.52e-33 127
Msa0678820 AT2G38510.1 28.571 245 174 1 109 352 198 442 4.77e-32 125
Msa0678820 AT4G23030.1 31.718 227 155 0 125 351 241 467 6.91e-32 125
Msa0678820 AT4G29140.1 29.646 226 159 0 127 352 266 491 2.92e-30 121
Msa0678820 AT3G23560.2 40.361 166 99 0 117 282 239 404 5.26e-30 119
Msa0678820 AT5G52050.1 31.731 208 142 0 145 352 269 476 2.71e-27 112
Msa0678820 AT1G58340.1 27.632 228 163 2 126 352 267 493 1.39e-25 107
Msa0678820 AT2G04066.1 37.398 123 77 0 231 353 36 158 3.95e-25 100
Msa0678820 AT1G71870.1 28.311 219 156 1 133 350 257 475 6.76e-25 105
Msa0678820 AT5G19700.1 26.549 226 166 0 125 350 244 469 2.67e-23 101
Msa0678820 AT1G66760.4 34.783 184 116 1 103 282 210 393 5.37e-23 99.4
Msa0678820 AT4G22790.1 30.041 243 166 3 112 350 223 465 1.82e-21 95.9
Msa0678820 AT5G49130.1 28.986 207 147 0 144 350 267 473 5.55e-20 91.3

Find 87 sgRNAs with CRISPR-Local

Find 671 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAATTTGTAGAATTTAT+TGG 0.133212 4_4:-35439583 None:intergenic
TTCTGGTCATCTTGGTAATT+TGG 0.143264 4_4:+35439946 Msa0678820:CDS
CTTGGTTTCTATTTCAAATT+TGG 0.163819 4_4:+35450574 Msa0678820:CDS
CTCTTGATTCTCTTTCTATT+TGG 0.176770 4_4:+35441948 Msa0678820:CDS
ACATTAGAGGAGTGTGTTTA+AGG 0.188643 4_4:-35450775 None:intergenic
ATACCTTTGGGTGCAGTTCT+TGG 0.241327 4_4:+35450556 Msa0678820:CDS
CACTTGTGGTGCTTGCATTA+AGG 0.251007 4_4:+35446935 Msa0678820:CDS
GCTCTTGCCATTGTCCTAAA+TGG 0.255274 4_4:+35447030 Msa0678820:CDS
ATCAAACTATGAAAGGAATT+TGG 0.258684 4_4:-35439615 None:intergenic
TATGAGAGAAATAAAGAGTT+TGG 0.275060 4_4:-35450867 None:intergenic
GGTATCCAAATATTTGCTTA+TGG 0.280228 4_4:+35439998 Msa0678820:CDS
TGAGTCCATAAGCAAATATT+TGG 0.288414 4_4:-35440003 None:intergenic
AGACAGGTTGAACACCATTT+AGG 0.291327 4_4:-35447044 None:intergenic
GACTTGGTACTTTCAAATCT+TGG 0.298304 4_4:+35441889 Msa0678820:CDS
GTAAACGTTGGTTGTTATTA+CGG 0.299705 4_4:+35450526 Msa0678820:CDS
GTGAGAGTGAGCAATGAATT+AGG 0.311563 4_4:+35446835 Msa0678820:CDS
GGAATATGGTTGGGAATGTT+AGG 0.327808 4_4:+35450682 Msa0678820:CDS
GCTGCTTCCCTTGGAAATAA+TGG 0.345684 4_4:+35439977 Msa0678820:CDS
TACGGGATTGGCATACCTTT+GGG 0.354515 4_4:+35450544 Msa0678820:CDS
ACTTGTGGTGCTTGCATTAA+GGG 0.362193 4_4:+35446936 Msa0678820:CDS
TCATCATTCACTCATTCATT+TGG 0.367294 4_4:+35439746 Msa0678820:CDS
TAAACGTTGGTTGTTATTAC+GGG 0.367910 4_4:+35450527 Msa0678820:CDS
GAGCTTGCTGCTGCTTCCCT+TGG 0.368536 4_4:+35439968 Msa0678820:CDS
GTTACTTCCTCATCCTGAAT+TGG 0.370620 4_4:+35441925 Msa0678820:CDS
TTACGGGATTGGCATACCTT+TGG 0.380719 4_4:+35450543 Msa0678820:CDS
AGAGAATCAAGAGCCAATTC+AGG 0.404938 4_4:-35441938 None:intergenic
GGTGTTCAACCTGTCTTATC+TGG 0.406641 4_4:+35447051 Msa0678820:CDS
AATTCATTTGCATATAAAGT+TGG 0.409008 4_4:-35439473 None:intergenic
AGTATTGGTGTTGGTTCACT+TGG 0.433830 4_4:-35439719 None:intergenic
TGTGTATAGGGAATATGGTT+GGG 0.435556 4_4:+35450673 Msa0678820:intron
GTGAAAAGTGTAAGCATACT+TGG 0.441557 4_4:+35441783 Msa0678820:CDS
GGTTCACTTGGTACTAGTAA+AGG 0.448413 4_4:-35439707 None:intergenic
ACGTGATTGAATACTCGATA+AGG 0.454674 4_4:-35439390 None:intergenic
AAAGGGGTGGCCGTTGGATG+TGG 0.455534 4_4:+35450481 Msa0678820:intron
TGATGTTGTGTTTAGAGACT+TGG 0.457373 4_4:+35441873 Msa0678820:CDS
GTTGGTTGTTATTACGGGAT+TGG 0.463076 4_4:+35450532 Msa0678820:CDS
TGTCTAATACGTTTCACAAA+AGG 0.464084 4_4:-35439824 None:intergenic
ATGGTCTACTACGGGATGAT+TGG 0.468996 4_4:-35439338 None:intergenic
AACTATGAAAGGAATTTGGT+TGG 0.475775 4_4:-35439611 None:intergenic
ATAGTGAGAGTACACATTAG+AGG 0.485916 4_4:-35450788 None:intergenic
CTATTTCAAATTTGGTGCCA+AGG 0.487508 4_4:+35450582 Msa0678820:CDS
TTGTGTATAGGGAATATGGT+TGG 0.489051 4_4:+35450672 Msa0678820:intron
ATTTGTAGAATTTATTGGCT+CGG 0.491164 4_4:-35439578 None:intergenic
TAATCAGCCATGGTCTACTA+CGG 0.501217 4_4:-35439347 None:intergenic
TTTGGATACCATTATTTCCA+AGG 0.502739 4_4:-35439985 None:intergenic
ATATGCAGTACCACAGTGTC+TGG 0.508148 4_4:+35445516 Msa0678820:intron
AAGTGTAAGCATACTTGGAA+AGG 0.510303 4_4:+35441788 Msa0678820:CDS
GTGAGCAATGAATTAGGAGC+AGG 0.511345 4_4:+35446841 Msa0678820:CDS
AATATTTGCTTATGGACTCA+TGG 0.511547 4_4:+35440006 Msa0678820:CDS
TTGACATCACATAATTGATA+AGG 0.514223 4_4:-35439907 None:intergenic
TGGACGTTCATGATCTCAGT+TGG 0.517302 4_4:+35445540 Msa0678820:CDS
AGTGTAAGCATACTTGGAAA+GGG 0.518083 4_4:+35441789 Msa0678820:CDS
TACATGAAAGGGGTGGCCGT+TGG 0.526495 4_4:+35450475 Msa0678820:intron
ACCTTGCTATTAATCAGCCA+TGG 0.530700 4_4:-35439357 None:intergenic
GGGTAACATTTCGAACGGAT+TGG 0.533114 4_4:+35450737 Msa0678820:CDS
AACGTATTAGACATGCTACA+TGG 0.535997 4_4:+35439834 Msa0678820:CDS
TCAAGAGCCAATTCAGGATG+AGG 0.538881 4_4:-35441932 None:intergenic
ATAGTAAATCAAACTATGAA+AGG 0.556136 4_4:-35439622 None:intergenic
GTGAATGATGATAGTAGTAT+TGG 0.560516 4_4:-35439734 None:intergenic
GTTGGGAATGTTAGGTGGCA+CGG 0.563108 4_4:+35450690 Msa0678820:CDS
AATCAGCCATGGTCTACTAC+GGG 0.564117 4_4:-35439346 None:intergenic
CGTGATTGAATACTCGATAA+GGG 0.574168 4_4:-35439389 None:intergenic
GGGTGGCCGTTGGATGTGGA+TGG 0.574578 4_4:+35450485 Msa0678820:CDS
AATGTGGGTAACATTTCGAA+CGG 0.579480 4_4:+35450732 Msa0678820:CDS
TCGAACGGATTGGAATAATG+AGG 0.580155 4_4:+35450747 Msa0678820:CDS
GCAGTACCACAGTGTCTGGA+TGG 0.583514 4_4:+35445520 Msa0678820:intron
ACCATGGCTGATTAATAGCA+AGG 0.583619 4_4:+35439356 Msa0678820:five_prime_UTR
GGTTCAAAGCATGAATCAGA+TGG 0.585307 4_4:+35439767 Msa0678820:CDS
TTGGATACCATTATTTCCAA+GGG 0.585736 4_4:-35439984 None:intergenic
GATGATAGTAGTATTGGTGT+TGG 0.589523 4_4:-35439728 None:intergenic
ATAATTATACCAGATAAGAC+AGG 0.592062 4_4:-35447060 None:intergenic
CAATTACCGCAGGTGCAGCT+AGG 0.592518 4_4:-35439880 None:intergenic
TTGGATTTCAAGCAGCTGCA+AGG 0.593329 4_4:+35445559 Msa0678820:CDS
TTGAACACCATTTAGGACAA+TGG 0.601636 4_4:-35447037 None:intergenic
ATCAGCTATGTCTTCACAGA+CGG 0.605567 4_4:+35446964 Msa0678820:CDS
TTAGGACAATGGCAAGAGCA+AGG 0.626354 4_4:-35447026 None:intergenic
ATGTGCAATTATAGCACTTG+TGG 0.629020 4_4:+35446921 Msa0678820:CDS
TGTCTTCACAGACGGTGAAG+AGG 0.635141 4_4:+35446972 Msa0678820:CDS
ATATGGTTGGGAATGTTAGG+TGG 0.636197 4_4:+35450685 Msa0678820:CDS
ACGTATTAGACATGCTACAT+GGG 0.638198 4_4:+35439835 Msa0678820:CDS
TGTTTGCCATCCACATCCAA+CGG 0.639236 4_4:-35450491 None:intergenic
AAACCAAGAACTGCACCCAA+AGG 0.650080 4_4:-35450559 None:intergenic
ATAAGGTACACAATTACCGC+AGG 0.652901 4_4:-35439890 None:intergenic
AATCATCCCGTAGTAGACCA+TGG 0.679989 4_4:+35439340 Msa0678820:five_prime_UTR
TTTGTTGCGTATGTAAACGT+TGG 0.686719 4_4:+35450514 Msa0678820:CDS
ACAATGGCAAGAGCAAGGAG+TGG 0.692279 4_4:-35447021 None:intergenic
GAACGTCCATCCAGACACTG+TGG 0.760764 4_4:-35445526 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAATTTGTAGAATTTAT+TGG - chr4_4:35439586-35439605 None:intergenic 10.0%
!! ATTAAGTATATATAAACTAA+TGG - chr4_4:35440111-35440130 None:intergenic 10.0%
!!! TATACTTATTTTAAACTAAA+GGG - chr4_4:35440240-35440259 None:intergenic 10.0%
!!! TTATACTTATTTTAAACTAA+AGG - chr4_4:35440241-35440260 None:intergenic 10.0%
!!! TATAAATAATATGCAATTTT+TGG - chr4_4:35440455-35440474 None:intergenic 10.0%
!! AGATAATTATAAGTAAAATT+AGG - chr4_4:35440622-35440641 None:intergenic 10.0%
!!! TTAATTTAAAATTGGTATAT+TGG + chr4_4:35440709-35440728 Msa0678820:intron 10.0%
!!! AAAAATTTGTTTTGAATAAT+TGG + chr4_4:35441295-35441314 Msa0678820:intron 10.0%
!! TATTATTGTTAAAATTAAAC+CGG - chr4_4:35441450-35441469 None:intergenic 10.0%
!!! AATATTATATTCATTTGTTA+AGG + chr4_4:35442424-35442443 Msa0678820:intron 10.0%
!!! TTTTGTTACAATATTTATTT+TGG - chr4_4:35442466-35442485 None:intergenic 10.0%
!! ATAAATATTGTAACAAAAAA+AGG + chr4_4:35442468-35442487 Msa0678820:intron 10.0%
!! TAAATATTGTAACAAAAAAA+GGG + chr4_4:35442469-35442488 Msa0678820:intron 10.0%
!!! TAGTTTTTCTATAAAATATA+AGG + chr4_4:35443337-35443356 Msa0678820:intron 10.0%
!!! ATGATAAATTATGATTTTAT+TGG + chr4_4:35445225-35445244 Msa0678820:intron 10.0%
!! TCATATGTATTATTAAAAAA+GGG + chr4_4:35445966-35445985 Msa0678820:intron 10.0%
!! AAAAAATACATAAAAAAACT+GGG + chr4_4:35445989-35446008 Msa0678820:intron 10.0%
!! TTTAATTCTTATTATCATTA+AGG - chr4_4:35447421-35447440 None:intergenic 10.0%
!!! TTCAAATTATTTTTAAGAAT+TGG + chr4_4:35450324-35450343 Msa0678820:intron 10.0%
!!! CATTTTAAACAATTATTTTT+TGG + chr4_4:35450410-35450429 Msa0678820:intron 10.0%
!! ATTACCATAAAAACATAATT+GGG - chr4_4:35439448-35439467 None:intergenic 15.0%
!! TATTACCATAAAAACATAAT+TGG - chr4_4:35439449-35439468 None:intergenic 15.0%
!! TTAACAAAAATAATACCTTA+TGG + chr4_4:35440360-35440379 Msa0678820:intron 15.0%
!!! TAAAATAGTTCAGTTTTTTT+AGG + chr4_4:35440428-35440447 Msa0678820:intron 15.0%
!! AAATTGCATATTATTTATAG+AGG + chr4_4:35440456-35440475 Msa0678820:intron 15.0%
!! AATTGCATATTATTTATAGA+GGG + chr4_4:35440457-35440476 Msa0678820:intron 15.0%
!!! AATTTTAAATTAACAAACTG+AGG - chr4_4:35440702-35440721 None:intergenic 15.0%
!!! TCAGTTTGTTAATTTAAAAT+TGG + chr4_4:35440701-35440720 Msa0678820:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr4_4:35441198-35441217 None:intergenic 15.0%
!! TTCAAAAATTTAAGAGTTTA+AGG - chr4_4:35441105-35441124 None:intergenic 15.0%
!! AGATAAAAAGTAATAAAATC+TGG + chr4_4:35441005-35441024 Msa0678820:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr4_4:35441198-35441217 Msa0678820:intron 15.0%
!! TTTATTAATACAAGCTTATT+GGG - chr4_4:35441277-35441296 None:intergenic 15.0%
!!! TTTTATTAATACAAGCTTAT+TGG - chr4_4:35441278-35441297 None:intergenic 15.0%
!! TAGAAATATTAAAATTGGTT+CGG - chr4_4:35441483-35441502 None:intergenic 15.0%
!! AAGAATGTGAAATTAAAAAT+TGG - chr4_4:35441993-35442012 None:intergenic 15.0%
!!! TAGAATTTGATTTAAACTTT+AGG - chr4_4:35442085-35442104 None:intergenic 15.0%
!! AAAAATTAAGTCCTTAAAAA+GGG - chr4_4:35442253-35442272 None:intergenic 15.0%
!! AAAAAATTAAGTCCTTAAAA+AGG - chr4_4:35442254-35442273 None:intergenic 15.0%
!!! AAAAGACTTTCAATAAATTT+TGG - chr4_4:35442741-35442760 None:intergenic 15.0%
!! ATAATAAATGTTCTTATCTT+AGG - chr4_4:35442827-35442846 None:intergenic 15.0%
!!! TTTTATTAAAAATTAGACGT+GGG - chr4_4:35445024-35445043 None:intergenic 15.0%
!! AGATTAAAGTTATATTTCTT+CGG - chr4_4:35445373-35445392 None:intergenic 15.0%
!! AATCGATCAATAAATATTAA+AGG - chr4_4:35445594-35445613 None:intergenic 15.0%
!! CTCATATGTATTATTAAAAA+AGG + chr4_4:35445965-35445984 Msa0678820:intron 15.0%
!! GAAAAAATACATAAAAAAAC+TGG + chr4_4:35445988-35446007 Msa0678820:intron 15.0%
!! AAAAATACATAAAAAAACTG+GGG + chr4_4:35445990-35446009 Msa0678820:intron 15.0%
!!! AATTTTTTTATTACCGATTT+TGG - chr4_4:35446060-35446079 None:intergenic 15.0%
!!! ATTCATATTCATATTTTTAG+CGG - chr4_4:35446440-35446459 None:intergenic 15.0%
!! AAAAATTTAAAAGTAGGTAT+CGG - chr4_4:35446746-35446765 None:intergenic 15.0%
!!! ACTTTGAAAAATTTAAAAGT+AGG - chr4_4:35446752-35446771 None:intergenic 15.0%
!! ATAATTTAGTTAATGAAGAA+GGG - chr4_4:35449406-35449425 None:intergenic 15.0%
!! AATCTTATTATTTACATGAA+AGG + chr4_4:35450463-35450482 Msa0678820:intron 15.0%
!! ATCTTATTATTTACATGAAA+GGG + chr4_4:35450464-35450483 Msa0678820:intron 15.0%
!! AATTCATTTGCATATAAAGT+TGG - chr4_4:35439476-35439495 None:intergenic 20.0%
!! ATAGTAAATCAAACTATGAA+AGG - chr4_4:35439625-35439644 None:intergenic 20.0%
!!! TCTCAAATTTTTCACAAATA+TGG + chr4_4:35439649-35439668 Msa0678820:exon 20.0%
!!! AATTTTGCGATAATTTTTTG+CGG + chr4_4:35441040-35441059 Msa0678820:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG + chr4_4:35441134-35441153 Msa0678820:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG + chr4_4:35441135-35441154 Msa0678820:intron 20.0%
!!! GAACCAATTTTAATATTTCT+AGG + chr4_4:35441482-35441501 Msa0678820:intron 20.0%
!! TCTCCTAGAAATATTAAAAT+TGG - chr4_4:35441488-35441507 None:intergenic 20.0%
!!! GATTTAAACTTTAGGATTAT+TGG - chr4_4:35442077-35442096 None:intergenic 20.0%
!!! TAAGATTTTTGTAAGATAGA+AGG + chr4_4:35442512-35442531 Msa0678820:intron 20.0%
!!! AAGATTTTTGTAAGATAGAA+GGG + chr4_4:35442513-35442532 Msa0678820:intron 20.0%
!!! TGCTTTAAAAAAAATGATTG+TGG + chr4_4:35442546-35442565 Msa0678820:intron 20.0%
!!! GCTTTAAAAAAAATGATTGT+GGG + chr4_4:35442547-35442566 Msa0678820:intron 20.0%
!! CACTTTGGATTAAATAATAA+AGG + chr4_4:35443110-35443129 Msa0678820:intron 20.0%
!!! ATTAATCCTTCAAGTTAAAT+AGG - chr4_4:35443216-35443235 None:intergenic 20.0%
!! ATAGAAAAACTATAATTCAG+AGG - chr4_4:35443329-35443348 None:intergenic 20.0%
!! CTTATTTATGCATAATTTGA+TGG - chr4_4:35444108-35444127 None:intergenic 20.0%
!!! AAATTTGCTATGAAAGAATT+GGG - chr4_4:35444396-35444415 None:intergenic 20.0%
!!! TAAATTTGCTATGAAAGAAT+TGG - chr4_4:35444397-35444416 None:intergenic 20.0%
!!! CTTTTATTAAAAATTAGACG+TGG - chr4_4:35445025-35445044 None:intergenic 20.0%
!!! CATATACTTTTCTAGATAAT+GGG - chr4_4:35445145-35445164 None:intergenic 20.0%
!!! ACATATACTTTTCTAGATAA+TGG - chr4_4:35445146-35445165 None:intergenic 20.0%
!!! ATTATCTAGAAAAGTATATG+TGG + chr4_4:35445145-35445164 Msa0678820:intron 20.0%
!! ATGTTGAATCTTATGTATAA+TGG + chr4_4:35445318-35445337 Msa0678820:intron 20.0%
!!! TTCAGAGAGAATATTTTATA+GGG - chr4_4:35445436-35445455 None:intergenic 20.0%
!!! ATTCAGAGAGAATATTTTAT+AGG - chr4_4:35445437-35445456 None:intergenic 20.0%
!!! AGGAAAATAAAACAAGTTTT+AGG - chr4_4:35445472-35445491 None:intergenic 20.0%
!! ATGACATATAAAAGAATAGA+AGG + chr4_4:35445720-35445739 Msa0678820:intron 20.0%
!! AAAATACATAAAAAAACTGG+GGG + chr4_4:35445991-35446010 Msa0678820:intron 20.0%
!! ATAATCTAAACAAATGTGTT+AGG + chr4_4:35446510-35446529 Msa0678820:intron 20.0%
!! TAGTGATAATCATGTTTAAA+TGG - chr4_4:35447763-35447782 None:intergenic 20.0%
!! TGCTAAGAAATATGTAAAAT+TGG - chr4_4:35448537-35448556 None:intergenic 20.0%
!! AATCAACAGAAATAACATAT+GGG - chr4_4:35449279-35449298 None:intergenic 20.0%
!! TAATTTAGTTAATGAAGAAG+GGG - chr4_4:35449405-35449424 None:intergenic 20.0%
!! GATAATTTAGTTAATGAAGA+AGG - chr4_4:35449407-35449426 None:intergenic 20.0%
!! TCTTCATTAACTAAATTATC+TGG + chr4_4:35449407-35449426 Msa0678820:intron 20.0%
!! AAATTGTTGAAAAGATTATG+AGG - chr4_4:35449917-35449936 None:intergenic 20.0%
!! TAGTGATAATCATGTTTAAA+TGG - chr4_4:35447763-35447782 None:intergenic 20.0%
!!! GATTGATTCAAAAATATTTG+CGG - chr4_4:35450391-35450410 None:intergenic 20.0%
!! TCTTATTATTTACATGAAAG+GGG + chr4_4:35450465-35450484 Msa0678820:intron 20.0%
!! ATAGAAAATCATATATACCT+TGG - chr4_4:35450602-35450621 None:intergenic 20.0%
!!! TATATGATTTTCTATCCAAA+AGG + chr4_4:35450607-35450626 Msa0678820:intron 20.0%
!!! TGCAAACAATTATTTTAATG+TGG + chr4_4:35450716-35450735 Msa0678820:CDS 20.0%
!!! GCAAACAATTATTTTAATGT+GGG + chr4_4:35450717-35450736 Msa0678820:CDS 20.0%
!!! ATCACCCAATTATGTTTTTA+TGG + chr4_4:35439441-35439460 Msa0678820:five_prime_UTR 25.0%
!! ATTTGTAGAATTTATTGGCT+CGG - chr4_4:35439581-35439600 None:intergenic 25.0%
! ATCAAACTATGAAAGGAATT+TGG - chr4_4:35439618-35439637 None:intergenic 25.0%
! TTGACATCACATAATTGATA+AGG - chr4_4:35439910-35439929 None:intergenic 25.0%
!! ATGTCTACTCAAATATTTTC+TGG + chr4_4:35439929-35439948 Msa0678820:CDS 25.0%
!! TTATGTTCTTCTCTTTTCTA+TGG + chr4_4:35440174-35440193 Msa0678820:intron 25.0%
! TGATCTCTCAAATTTATTGT+AGG + chr4_4:35440326-35440345 Msa0678820:intron 25.0%
!!! TACAATGTCGCTATTTTATA+GGG - chr4_4:35440752-35440771 None:intergenic 25.0%
!!! TTACAATGTCGCTATTTTAT+AGG - chr4_4:35440753-35440772 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG - chr4_4:35440845-35440864 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG - chr4_4:35440846-35440865 None:intergenic 25.0%
! AGGGCAAAAAAAACAAAATT+AGG + chr4_4:35441168-35441187 Msa0678820:intron 25.0%
! GGGCAAAAAAAACAAAATTA+GGG + chr4_4:35441169-35441188 Msa0678820:intron 25.0%
!! GCAAAAAAGTATGAAATGTT+AGG + chr4_4:35441386-35441405 Msa0678820:intron 25.0%
! TATTGGAAAGTTTATAGCAT+AGG - chr4_4:35441573-35441592 None:intergenic 25.0%
!! GCTTGAAGAAATTTTTGTAT+TGG - chr4_4:35441590-35441609 None:intergenic 25.0%
! TAACAACATAACTTAATGCA+AGG - chr4_4:35441667-35441686 None:intergenic 25.0%
! TATGTTGTTATCTACCAAAT+TGG + chr4_4:35441677-35441696 Msa0678820:intron 25.0%
! ATGTTGTTATCTACCAAATT+GGG + chr4_4:35441678-35441697 Msa0678820:intron 25.0%
!!! CATTGGTTTTAAGTATTTCT+TGG + chr4_4:35441720-35441739 Msa0678820:intron 25.0%
!!! TTTAGTTTTCAAGCTTTTTC+AGG + chr4_4:35441812-35441831 Msa0678820:CDS 25.0%
!!! TTAGTTTTCAAGCTTTTTCA+GGG + chr4_4:35441813-35441832 Msa0678820:CDS 25.0%
!! TTATTAGATGACCCTTTTTA+AGG + chr4_4:35442239-35442258 Msa0678820:intron 25.0%
!! AGATTTTTGTAAGATAGAAG+GGG + chr4_4:35442514-35442533 Msa0678820:intron 25.0%
! GTTCTTTCAATTCCATATAT+AGG - chr4_4:35442582-35442601 None:intergenic 25.0%
! ATTATTATTCTTAACCCTGT+TGG + chr4_4:35442845-35442864 Msa0678820:intron 25.0%
! AGAAATAGAAAAGTCAATTG+TGG - chr4_4:35442878-35442897 None:intergenic 25.0%
!!! ACAATTGACTTTTCTATTTC+TGG + chr4_4:35442877-35442896 Msa0678820:intron 25.0%
! ATGAAACAAACAAATTCCAT+TGG + chr4_4:35442932-35442951 Msa0678820:intron 25.0%
! CAAGTTAAATAGGATCTTTA+TGG - chr4_4:35443206-35443225 None:intergenic 25.0%
!!! AAAGATCCTATTTAACTTGA+AGG + chr4_4:35443207-35443226 Msa0678820:intron 25.0%
!!! AATGCTACATTTTTTTTGAG+CGG + chr4_4:35443284-35443303 Msa0678820:intron 25.0%
!! ACATGTATTTTATTCTTGAG+TGG + chr4_4:35443367-35443386 Msa0678820:intron 25.0%
! GTTGTCTATTAAAGTGTATA+AGG - chr4_4:35443401-35443420 None:intergenic 25.0%
! ACACATTAAGAATCATGATT+GGG - chr4_4:35443437-35443456 None:intergenic 25.0%
! CATCAAATTGCAAATATCTT+CGG - chr4_4:35443614-35443633 None:intergenic 25.0%
! AGATATTTGCAATTTGATGA+CGG + chr4_4:35443615-35443634 Msa0678820:intron 25.0%
! GAATTGGACAATATAATTCT+AGG + chr4_4:35443791-35443810 Msa0678820:intron 25.0%
! ATTAATGGTACTAGTCATTA+TGG - chr4_4:35444047-35444066 None:intergenic 25.0%
!!! AATTTGCTATGAAAGAATTG+GGG - chr4_4:35444395-35444414 None:intergenic 25.0%
! CTAGATATGTTTCATCTATT+GGG - chr4_4:35444559-35444578 None:intergenic 25.0%
! TCTAGATATGTTTCATCTAT+TGG - chr4_4:35444560-35444579 None:intergenic 25.0%
! AATCTTATGTATAATGGTGT+AGG + chr4_4:35445324-35445343 Msa0678820:intron 25.0%
! ATCTTATGTATAATGGTGTA+GGG + chr4_4:35445325-35445344 Msa0678820:intron 25.0%
!! AGAATATTTTATAGGGTGAT+AGG - chr4_4:35445429-35445448 None:intergenic 25.0%
!!! ACACATTAATTTGTGCATAA+AGG - chr4_4:35445492-35445511 None:intergenic 25.0%
!! TTTTGTGGATAAATTGAGTT+TGG - chr4_4:35446024-35446043 None:intergenic 25.0%
!! ATTTATCCACAAAAAAGTGT+AGG + chr4_4:35446030-35446049 Msa0678820:intron 25.0%
! AAAATCTTCCAATTAATGGA+TGG - chr4_4:35446398-35446417 None:intergenic 25.0%
! CTGAAAAATCTTCCAATTAA+TGG - chr4_4:35446402-35446421 None:intergenic 25.0%
! CCATAACTATATGTTGATAT+TGG - chr4_4:35446650-35446669 None:intergenic 25.0%
! CCAATATCAACATATAGTTA+TGG + chr4_4:35446647-35446666 Msa0678820:intron 25.0%
! ATAATTATACCAGATAAGAC+AGG - chr4_4:35447063-35447082 None:intergenic 25.0%
! CTTATATACACTATTGTGTT+AGG + chr4_4:35447634-35447653 Msa0678820:intron 25.0%
! AGTGTAGCTAATAAATGTTA+GGG - chr4_4:35447689-35447708 None:intergenic 25.0%
! TGAAAATATACTCAAAGAGA+AGG - chr4_4:35448087-35448106 None:intergenic 25.0%
! ATGTTTGAATGATAGTTCAA+TGG - chr4_4:35448300-35448319 None:intergenic 25.0%
! GAACTATCATTCAAACATTT+AGG + chr4_4:35448302-35448321 Msa0678820:intron 25.0%
! CATTCAAACATTTAGGAAAT+AGG + chr4_4:35448309-35448328 Msa0678820:intron 25.0%
! ACATTGTTCAAACAAATTGT+AGG - chr4_4:35448482-35448501 None:intergenic 25.0%
!! ACAATTTGTTTGAACAATGT+AGG + chr4_4:35448482-35448501 Msa0678820:intron 25.0%
!!! GTAAAATCTGCTTTTCTAAA+TGG - chr4_4:35449019-35449038 None:intergenic 25.0%
! TTTACATTCAAATGATGCAT+TGG + chr4_4:35449034-35449053 Msa0678820:intron 25.0%
! AAAATCCATTTCACATCTAT+TGG + chr4_4:35449224-35449243 Msa0678820:intron 25.0%
! CAATCAACAGAAATAACATA+TGG - chr4_4:35449280-35449299 None:intergenic 25.0%
! AATGCTACATCATAATTGAT+TGG + chr4_4:35449344-35449363 Msa0678820:intron 25.0%
! ATCATCTTCTTCAATTATTG+TGG + chr4_4:35449557-35449576 Msa0678820:intron 25.0%
! TCATCTTCTTCAATTATTGT+GGG + chr4_4:35449558-35449577 Msa0678820:intron 25.0%
! GATTGAAATAAGAAAGAGAA+GGG - chr4_4:35449600-35449619 None:intergenic 25.0%
! AGATTGAAATAAGAAAGAGA+AGG - chr4_4:35449601-35449620 None:intergenic 25.0%
! AAAGGTAAGAAAAACTCTAA+GGG - chr4_4:35449693-35449712 None:intergenic 25.0%
!! ATTCTTTCAAAGTATCATCA+AGG - chr4_4:35450095-35450114 None:intergenic 25.0%
! AGTGTAGCTAATAAATGTTA+GGG - chr4_4:35447689-35447708 None:intergenic 25.0%
! CTTGGTTTCTATTTCAAATT+TGG + chr4_4:35450574-35450593 Msa0678820:CDS 25.0%
!!! TGAAGTTTGTTTTTGTGTAT+AGG + chr4_4:35450660-35450679 Msa0678820:intron 25.0%
!!! GAAGTTTGTTTTTGTGTATA+GGG + chr4_4:35450661-35450680 Msa0678820:intron 25.0%
! TATGAGAGAAATAAAGAGTT+TGG - chr4_4:35450870-35450889 None:intergenic 25.0%
!! ACTCGAATGTTTTTATGTGA+TGG - chr4_4:35439515-35439534 None:intergenic 30.0%
AACTATGAAAGGAATTTGGT+TGG - chr4_4:35439614-35439633 None:intergenic 30.0%
GTGAATGATGATAGTAGTAT+TGG - chr4_4:35439737-35439756 None:intergenic 30.0%
TCATCATTCACTCATTCATT+TGG + chr4_4:35439746-35439765 Msa0678820:CDS 30.0%
TGTCTAATACGTTTCACAAA+AGG - chr4_4:35439827-35439846 None:intergenic 30.0%
!! CAAATATTTTCTGGTCATCT+TGG + chr4_4:35439938-35439957 Msa0678820:CDS 30.0%
TTGGATACCATTATTTCCAA+GGG - chr4_4:35439987-35440006 None:intergenic 30.0%
TTTGGATACCATTATTTCCA+AGG - chr4_4:35439988-35440007 None:intergenic 30.0%
GGTATCCAAATATTTGCTTA+TGG + chr4_4:35439998-35440017 Msa0678820:CDS 30.0%
TGAGTCCATAAGCAAATATT+TGG - chr4_4:35440006-35440025 None:intergenic 30.0%
AATATTTGCTTATGGACTCA+TGG + chr4_4:35440006-35440025 Msa0678820:CDS 30.0%
!!! ATTCTCTCTGTTTTAGTACT+TGG + chr4_4:35440046-35440065 Msa0678820:intron 30.0%
AGAAAAGAGAAGAACATAAG+TGG - chr4_4:35440173-35440192 None:intergenic 30.0%
! GGCTTTGTCTAGAAAATTAT+TGG + chr4_4:35440195-35440214 Msa0678820:intron 30.0%
TTCTTGCACTAATTTCCATA+AGG - chr4_4:35440378-35440397 None:intergenic 30.0%
GGAAATTAGTGCAAGAAAAT+TGG + chr4_4:35440381-35440400 Msa0678820:intron 30.0%
GCCATAAAGACTTATTTACA+GGG + chr4_4:35440403-35440422 Msa0678820:intron 30.0%
TCCCTGTAAATAAGTCTTTA+TGG - chr4_4:35440407-35440426 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG + chr4_4:35440908-35440927 Msa0678820:intron 30.0%
AAGTAAGGACTAAACTTACA+AGG + chr4_4:35441213-35441232 Msa0678820:intron 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr4_4:35441228-35441247 Msa0678820:intron 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr4_4:35441229-35441248 Msa0678820:intron 30.0%
TAATACAAGCTTATTGGGAA+GGG - chr4_4:35441272-35441291 None:intergenic 30.0%
TTAATACAAGCTTATTGGGA+AGG - chr4_4:35441273-35441292 None:intergenic 30.0%
AATGTTCATGATGAAACAGT+TGG + chr4_4:35441319-35441338 Msa0678820:intron 30.0%
ATGTTCATGATGAAACAGTT+GGG + chr4_4:35441320-35441339 Msa0678820:intron 30.0%
TAGCATAGGCAAATATTTGT+GGG - chr4_4:35441559-35441578 None:intergenic 30.0%
ATAGCATAGGCAAATATTTG+TGG - chr4_4:35441560-35441579 None:intergenic 30.0%
!!! TGGTTTTAAGTATTTCTTGG+TGG + chr4_4:35441723-35441742 Msa0678820:intron 30.0%
GCTGACAATTTAAAAAACTC+TGG - chr4_4:35441842-35441861 None:intergenic 30.0%
CTCTTGATTCTCTTTCTATT+TGG + chr4_4:35441948-35441967 Msa0678820:CDS 30.0%
GTTCATTAAACGTAATGAGA+TGG - chr4_4:35442196-35442215 None:intergenic 30.0%
! GATTTTTGTAAGATAGAAGG+GGG + chr4_4:35442515-35442534 Msa0678820:intron 30.0%
GGGTATATCAATCCTATATA+TGG + chr4_4:35442567-35442586 Msa0678820:intron 30.0%
TTAGCGAACTATCTGAAAAT+TGG - chr4_4:35442659-35442678 None:intergenic 30.0%
! AATTTTCAGATAGTTCGCTA+AGG + chr4_4:35442658-35442677 Msa0678820:intron 30.0%
!! CCTAGTTATTGACTTCAAAT+TGG - chr4_4:35442690-35442709 None:intergenic 30.0%
! CCAATTTGAAGTCAATAACT+AGG + chr4_4:35442687-35442706 Msa0678820:intron 30.0%
TATTATACAGTTGCGCATAA+AGG + chr4_4:35443237-35443256 Msa0678820:intron 30.0%
CACACATTAAGAATCATGAT+TGG - chr4_4:35443438-35443457 None:intergenic 30.0%
CAATCATGATTCTTAATGTG+TGG + chr4_4:35443436-35443455 Msa0678820:intron 30.0%
CTGGTACTTTGAATTATTCA+AGG - chr4_4:35443578-35443597 None:intergenic 30.0%
! GATATTTGCAATTTGATGAC+GGG + chr4_4:35443616-35443635 Msa0678820:intron 30.0%
ATGGTTCTTTGATGTTGAAT+TGG + chr4_4:35443712-35443731 Msa0678820:intron 30.0%
GAGAAATAAATAGTAGCTAG+AGG + chr4_4:35443936-35443955 Msa0678820:intron 30.0%
AAATAAATAGTAGCTAGAGG+TGG + chr4_4:35443939-35443958 Msa0678820:intron 30.0%
TAGTACCATTAATGTAGCAT+AGG + chr4_4:35444054-35444073 Msa0678820:intron 30.0%
TGTAGAACATGGCTTATATT+AGG + chr4_4:35444267-35444286 Msa0678820:intron 30.0%
ATACCTTGAAAATAGCTCAA+TGG + chr4_4:35444369-35444388 Msa0678820:intron 30.0%
! TCATAGCAAATTTAGAGTTG+AGG + chr4_4:35444403-35444422 Msa0678820:intron 30.0%
! CATAGCAAATTTAGAGTTGA+GGG + chr4_4:35444404-35444423 Msa0678820:intron 30.0%
! ATAGCAAATTTAGAGTTGAG+GGG + chr4_4:35444405-35444424 Msa0678820:intron 30.0%
TTGGCGAAGATTATAAGTAA+AGG + chr4_4:35444440-35444459 Msa0678820:intron 30.0%
TTCAAAGATCCAACTCATTA+TGG - chr4_4:35444653-35444672 None:intergenic 30.0%
CAATGATTGATACATGTAGA+CGG + chr4_4:35444676-35444695 Msa0678820:intron 30.0%
! TGTCAAAAATGCTTTTCTCT+CGG - chr4_4:35444717-35444736 None:intergenic 30.0%
TTAGACAGAGAAGAATCTTA+TGG - chr4_4:35444999-35445018 None:intergenic 30.0%
CTCGAATTGAAAAATGACAA+TGG - chr4_4:35445063-35445082 None:intergenic 30.0%
! CCTTTTTGTGTATAGAAACT+CGG + chr4_4:35445084-35445103 Msa0678820:intron 30.0%
! ATCTAGAAAAGTATATGTGG+TGG + chr4_4:35445148-35445167 Msa0678820:intron 30.0%
! GATCGATTTCTGTTTATCAT+TGG + chr4_4:35445606-35445625 Msa0678820:intron 30.0%
! TTTCTGTTTATCATTGGTTG+AGG + chr4_4:35445612-35445631 Msa0678820:intron 30.0%
!!! TTTTTTTGTCGTGGTAAACA+AGG - chr4_4:35445659-35445678 None:intergenic 30.0%
!!! GATTAGCATTTTTTTTGTCG+TGG - chr4_4:35445668-35445687 None:intergenic 30.0%
! AAGTATTGTGGATGATACTT+GGG - chr4_4:35445936-35445955 None:intergenic 30.0%
ATAATACATATGAGCACTTG+AGG - chr4_4:35445959-35445978 None:intergenic 30.0%
AAGTGTAGGTTTACCAAAAT+CGG + chr4_4:35446044-35446063 Msa0678820:intron 30.0%
! AAAATCAGCTTCATTTTCAG+TGG + chr4_4:35446870-35446889 Msa0678820:CDS 30.0%
GAGATTATAACATTCCACAA+TGG + chr4_4:35447159-35447178 Msa0678820:intron 30.0%
!! AATGATTTTCAAGCATTTGC+CGG - chr4_4:35447206-35447225 None:intergenic 30.0%
! AAAAGCAGTTTTGCAGTTTA+GGG + chr4_4:35447505-35447524 Msa0678820:intron 30.0%
AGAGAAAGATTATGTGATTG+AGG + chr4_4:35447562-35447581 Msa0678820:intron 30.0%
GAGTGTAGCTAATAAATGTT+AGG - chr4_4:35447690-35447709 None:intergenic 30.0%
GAAGTGGAAACTTGAATTAA+GGG - chr4_4:35447816-35447835 None:intergenic 30.0%
!! CATATTCACTAAAGCATTGA+AGG - chr4_4:35447880-35447899 None:intergenic 30.0%
GTGAATCTAAGTATATTGCA+GGG - chr4_4:35448139-35448158 None:intergenic 30.0%
TGTGAATCTAAGTATATTGC+AGG - chr4_4:35448140-35448159 None:intergenic 30.0%
GAATGAAGAAGAATAACTTG+TGG - chr4_4:35448510-35448529 None:intergenic 30.0%
ATGCATCTGATATATTGAAG+AGG - chr4_4:35448598-35448617 None:intergenic 30.0%
AAATTCCATACCCAAAAAGT+AGG + chr4_4:35448658-35448677 Msa0678820:intron 30.0%
!!! GGAAAATTGACCTACTTTTT+GGG - chr4_4:35448671-35448690 None:intergenic 30.0%
!! AGGAAAATTGACCTACTTTT+TGG - chr4_4:35448672-35448691 None:intergenic 30.0%
! GAGTTTGAAATGTCAGATTT+AGG - chr4_4:35448692-35448711 None:intergenic 30.0%
TATGTGAAGAAAGGAATTGA+AGG - chr4_4:35448809-35448828 None:intergenic 30.0%
ACATACACTTCTTCATCTAA+GGG + chr4_4:35448992-35449011 Msa0678820:intron 30.0%
AGAAACCAATAGATGTGAAA+TGG - chr4_4:35449232-35449251 None:intergenic 30.0%
GAAAGGTAAGAAAAACTCTA+AGG - chr4_4:35449694-35449713 None:intergenic 30.0%
! TCAAGAAGGATGATAATGAA+AGG - chr4_4:35449728-35449747 None:intergenic 30.0%
ATTAGAAGCTCATGAATTGA+TGG - chr4_4:35449805-35449824 None:intergenic 30.0%
TGTTAAGACATTGAAGATTG+AGG - chr4_4:35449841-35449860 None:intergenic 30.0%
AACTCATCAATCTTGTGAAT+CGG - chr4_4:35449974-35449993 None:intergenic 30.0%
ATTCACAAGATTGATGAGTT+TGG + chr4_4:35449974-35449993 Msa0678820:intron 30.0%
TTGATTAAGCTTCAATCACT+GGG - chr4_4:35450056-35450075 None:intergenic 30.0%
ATTGATTAAGCTTCAATCAC+TGG - chr4_4:35450057-35450076 None:intergenic 30.0%
TAATTCAACAGTTAGTTCCA+AGG - chr4_4:35450129-35450148 None:intergenic 30.0%
TTGGAACTAACTGTTGAATT+AGG + chr4_4:35450128-35450147 Msa0678820:intron 30.0%
GAGTGTAGCTAATAAATGTT+AGG - chr4_4:35447690-35447709 None:intergenic 30.0%
ATCTTGGTAAGTAGTTAATG+TGG - chr4_4:35450354-35450373 None:intergenic 30.0%
ACATTAACTACTTACCAAGA+TGG + chr4_4:35450353-35450372 Msa0678820:intron 30.0%
TATTATTTACATGAAAGGGG+TGG + chr4_4:35450468-35450487 Msa0678820:intron 30.0%
! GTAAACGTTGGTTGTTATTA+CGG + chr4_4:35450526-35450545 Msa0678820:CDS 30.0%
! TAAACGTTGGTTGTTATTAC+GGG + chr4_4:35450527-35450546 Msa0678820:CDS 30.0%
! ATCAAACATGGAAAACCTTT+TGG - chr4_4:35450625-35450644 None:intergenic 30.0%
ATAAGAGCTAGAATCAAACA+TGG - chr4_4:35450637-35450656 None:intergenic 30.0%
! GTTTTTGTGTATAGGGAATA+TGG + chr4_4:35450668-35450687 Msa0678820:intron 30.0%
! ATGTGTACTCTCACTATTTT+AGG + chr4_4:35450794-35450813 Msa0678820:three_prime_UTR 30.0%
! TGTGTACTCTCACTATTTTA+GGG + chr4_4:35450795-35450814 Msa0678820:three_prime_UTR 30.0%
CGTGATTGAATACTCGATAA+GGG - chr4_4:35439392-35439411 None:intergenic 35.0%
ACGTGATTGAATACTCGATA+AGG - chr4_4:35439393-35439412 None:intergenic 35.0%
!! GATGATAGTAGTATTGGTGT+TGG - chr4_4:35439731-35439750 None:intergenic 35.0%
AACGTATTAGACATGCTACA+TGG + chr4_4:35439834-35439853 Msa0678820:CDS 35.0%
ACGTATTAGACATGCTACAT+GGG + chr4_4:35439835-35439854 Msa0678820:CDS 35.0%
! TTCTGGTCATCTTGGTAATT+TGG + chr4_4:35439946-35439965 Msa0678820:CDS 35.0%
GGCCATAAAGACTTATTTAC+AGG + chr4_4:35440402-35440421 Msa0678820:intron 35.0%
!! TTTTTAGTGCCAAGACTTGT+GGG + chr4_4:35440641-35440660 Msa0678820:intron 35.0%
!!! TTTGCGATAATTTTTTGCGG+AGG + chr4_4:35441043-35441062 Msa0678820:intron 35.0%
ATACATATCAGCAGCAACAT+TGG + chr4_4:35441634-35441653 Msa0678820:intron 35.0%
CTAATAAACCAAGCCCAATT+TGG - chr4_4:35441694-35441713 None:intergenic 35.0%
! CAAATTGGGCTTGGTTTATT+AGG + chr4_4:35441692-35441711 Msa0678820:intron 35.0%
TGGTTTATTAGGTGCTTCAT+TGG + chr4_4:35441703-35441722 Msa0678820:intron 35.0%
! GTGAAAAGTGTAAGCATACT+TGG + chr4_4:35441783-35441802 Msa0678820:CDS 35.0%
AAGTGTAAGCATACTTGGAA+AGG + chr4_4:35441788-35441807 Msa0678820:CDS 35.0%
AGTGTAAGCATACTTGGAAA+GGG + chr4_4:35441789-35441808 Msa0678820:CDS 35.0%
TGATGTTGTGTTTAGAGACT+TGG + chr4_4:35441873-35441892 Msa0678820:CDS 35.0%
! GACTTGGTACTTTCAAATCT+TGG + chr4_4:35441889-35441908 Msa0678820:CDS 35.0%
!!! AAATCTTGGTTTTGCTTGCT+GGG + chr4_4:35441903-35441922 Msa0678820:CDS 35.0%
GAAAGATTTATCGTCTATCG+CGG + chr4_4:35442132-35442151 Msa0678820:intron 35.0%
!! ATTGTGGTCATTTTCCAACA+GGG - chr4_4:35442862-35442881 None:intergenic 35.0%
!! AATTGTGGTCATTTTCCAAC+AGG - chr4_4:35442863-35442882 None:intergenic 35.0%
! TCTGGAAGAACAAAAGTATG+CGG + chr4_4:35442895-35442914 Msa0678820:intron 35.0%
AATTCCATTGGTCAGTGAAA+TGG + chr4_4:35442944-35442963 Msa0678820:intron 35.0%
AATGCAACTCAATAGCACTT+TGG + chr4_4:35443095-35443114 Msa0678820:intron 35.0%
! TTCAAGGACATTTTCAGTGT+AGG - chr4_4:35443562-35443581 None:intergenic 35.0%
TTCACTTTGTCAGTGAAAAG+TGG - chr4_4:35443675-35443694 None:intergenic 35.0%
GTTGAATTGGATTACCAGAA+AGG + chr4_4:35443725-35443744 Msa0678820:intron 35.0%
CTCATTGATATGTACCTTTC+TGG - chr4_4:35443742-35443761 None:intergenic 35.0%
!! ACCATGATAGCTTTGTGAAT+TGG + chr4_4:35443775-35443794 Msa0678820:intron 35.0%
TCCAATTCACAAAGCTATCA+TGG - chr4_4:35443779-35443798 None:intergenic 35.0%
! AGTGTTGAAGTTGAATACCA+CGG - chr4_4:35443862-35443881 None:intergenic 35.0%
ATTCAACTTCAACACTAGAG+TGG + chr4_4:35443866-35443885 Msa0678820:intron 35.0%
TTCAACTTCAACACTAGAGT+GGG + chr4_4:35443867-35443886 Msa0678820:intron 35.0%
GTATGTGATCAATGATGTAG+TGG + chr4_4:35444001-35444020 Msa0678820:intron 35.0%
!! ATCAATGATGTAGTGGATGA+TGG + chr4_4:35444008-35444027 Msa0678820:intron 35.0%
!! ATGTAGTGGATGATGGATAA+TGG + chr4_4:35444015-35444034 Msa0678820:intron 35.0%
CGTTTCCTATGCTACATTAA+TGG - chr4_4:35444062-35444081 None:intergenic 35.0%
AGAAAATATGTTGTACCGCA+TGG + chr4_4:35444126-35444145 Msa0678820:intron 35.0%
TGCAATACTACGATAAAGTG+AGG + chr4_4:35444189-35444208 Msa0678820:intron 35.0%
GCAATACTACGATAAAGTGA+GGG + chr4_4:35444190-35444209 Msa0678820:intron 35.0%
! AGCTTTGGTTTAGTATCAAC+CGG + chr4_4:35444244-35444263 Msa0678820:intron 35.0%
ATATAAGCCATGTTCTACAC+CGG - chr4_4:35444266-35444285 None:intergenic 35.0%
TGTCGTCTACATATAAGAAG+AGG + chr4_4:35444475-35444494 Msa0678820:intron 35.0%
TATTGGGTTCATCCAAAGTA+TGG - chr4_4:35444543-35444562 None:intergenic 35.0%
CAAACATGACCATAATGAGT+TGG + chr4_4:35444641-35444660 Msa0678820:intron 35.0%
! GTCAAAAATGCTTTTCTCTC+GGG - chr4_4:35444716-35444735 None:intergenic 35.0%
ATGACTGATCACAATTCGAA+TGG + chr4_4:35444772-35444791 Msa0678820:intron 35.0%
CCGAGTTTCTATACACAAAA+AGG - chr4_4:35445087-35445106 None:intergenic 35.0%
TGTGTATAGAAACTCGGTTA+TGG + chr4_4:35445090-35445109 Msa0678820:intron 35.0%
GTGTATAGAAACTCGGTTAT+GGG + chr4_4:35445091-35445110 Msa0678820:intron 35.0%
TGTATAGAAACTCGGTTATG+GGG + chr4_4:35445092-35445111 Msa0678820:intron 35.0%
! AGCAGTGATTTTGTATCATG+TGG + chr4_4:35445116-35445135 Msa0678820:intron 35.0%
GGATATCCTAAGAATACACA+TGG + chr4_4:35445286-35445305 Msa0678820:intron 35.0%
ATAATGGTGTAGGGAAATAG+AGG + chr4_4:35445334-35445353 Msa0678820:intron 35.0%
! TGTTTATCATTGGTTGAGGT+TGG + chr4_4:35445616-35445635 Msa0678820:intron 35.0%
GATTCCACTAGACTCTAATA+CGG + chr4_4:35445748-35445767 Msa0678820:intron 35.0%
ATTCCACTAGACTCTAATAC+GGG + chr4_4:35445749-35445768 Msa0678820:intron 35.0%
!! ACATTGTGGTTGGTGATATT+GGG + chr4_4:35445785-35445804 Msa0678820:intron 35.0%
! TTTGTACACGTGTGACATTT+TGG + chr4_4:35445873-35445892 Msa0678820:intron 35.0%
!! GAAGTATTGTGGATGATACT+TGG - chr4_4:35445937-35445956 None:intergenic 35.0%
!!! GGTAAACCTACACTTTTTTG+TGG - chr4_4:35446039-35446058 None:intergenic 35.0%
AATGAAGACGTCTGATTAAG+AGG - chr4_4:35446110-35446129 None:intergenic 35.0%
TTAATCAGACGTCTTCATTG+CGG + chr4_4:35446111-35446130 Msa0678820:intron 35.0%
!! TACTATTTGGTGCCTAGTTT+GGG - chr4_4:35446225-35446244 None:intergenic 35.0%
TTGGGAATCCATCCATTAAT+TGG + chr4_4:35446387-35446406 Msa0678820:intron 35.0%
ATGTGCAATTATAGCACTTG+TGG + chr4_4:35446921-35446940 Msa0678820:CDS 35.0%
! TTGAACACCATTTAGGACAA+TGG - chr4_4:35447040-35447059 None:intergenic 35.0%
ATCACTACCATTGATGCAAA+AGG + chr4_4:35447128-35447147 Msa0678820:intron 35.0%
! TTTGACACCTTTTGCATCAA+TGG - chr4_4:35447138-35447157 None:intergenic 35.0%
CTCATCAAAATAGTCCATTG+TGG - chr4_4:35447176-35447195 None:intergenic 35.0%
!!! CAATGGACTATTTTGATGAG+TGG + chr4_4:35447176-35447195 Msa0678820:intron 35.0%
!!! TATTTTGATGAGTGGTCAAC+CGG + chr4_4:35447184-35447203 Msa0678820:intron 35.0%
CGATTATGAAGATGAGACAA+AGG - chr4_4:35447281-35447300 None:intergenic 35.0%
!! GACACTGATTTGATAGATGT+TGG + chr4_4:35447303-35447322 Msa0678820:intron 35.0%
! CTAAACTGCAAAACTGCTTT+TGG - chr4_4:35447506-35447525 None:intergenic 35.0%
! CAAAAGCAGTTTTGCAGTTT+AGG + chr4_4:35447504-35447523 Msa0678820:intron 35.0%
GGAAGTGGAAACTTGAATTA+AGG - chr4_4:35447817-35447836 None:intergenic 35.0%
TAAGTATATTGCAGGGTGTA+TGG - chr4_4:35448132-35448151 None:intergenic 35.0%
TTCTTTGCACACCATGAAAT+TGG + chr4_4:35448185-35448204 Msa0678820:intron 35.0%
TCTTTGCACACCATGAAATT+GGG + chr4_4:35448186-35448205 Msa0678820:intron 35.0%
TGATAGTTCAATGGAACTGA+TGG - chr4_4:35448291-35448310 None:intergenic 35.0%
AGAGTGATGAGATACATCAA+AGG - chr4_4:35448353-35448372 None:intergenic 35.0%
! GATGTATCTCATCACTCTTT+TGG + chr4_4:35448355-35448374 Msa0678820:intron 35.0%
GCAAGAAGATGAGATATTCT+TGG + chr4_4:35448380-35448399 Msa0678820:intron 35.0%
CCTGATATTGCATATGTAGT+TGG - chr4_4:35448431-35448450 None:intergenic 35.0%
CCAACTACATATGCAATATC+AGG + chr4_4:35448428-35448447 Msa0678820:intron 35.0%
! TGAGGTATCTATGCAATAGT+AGG - chr4_4:35448454-35448473 None:intergenic 35.0%
AACAAATTGTAGGTTCACTG+AGG - chr4_4:35448472-35448491 None:intergenic 35.0%
! TTAGCAGATGATGATGATGA+TGG + chr4_4:35448551-35448570 Msa0678820:intron 35.0%
GAATTTACTGAACTTGCAGA+GGG - chr4_4:35448644-35448663 None:intergenic 35.0%
!!! ATTGACCTACTTTTTGGGTA+TGG - chr4_4:35448666-35448685 None:intergenic 35.0%
!! GTTGATGACTTGATAAAGAC+TGG - chr4_4:35448761-35448780 None:intergenic 35.0%
AGATTACACAACACACTCTA+TGG - chr4_4:35448923-35448942 None:intergenic 35.0%
AATCAAAGGGAAGGAGAATA+TGG - chr4_4:35448951-35448970 None:intergenic 35.0%
AGGTTTCAAAATCAAAGGGA+AGG - chr4_4:35448960-35448979 None:intergenic 35.0%
!!! TTCCCTTTGATTTTGAAACC+TGG + chr4_4:35448959-35448978 Msa0678820:intron 35.0%
CACCAGGTTTCAAAATCAAA+GGG - chr4_4:35448964-35448983 None:intergenic 35.0%
CACATACACTTCTTCATCTA+AGG + chr4_4:35448991-35449010 Msa0678820:intron 35.0%
! TTGATGGTTGATATAGCATG+TGG - chr4_4:35449070-35449089 None:intergenic 35.0%
ATTAGAGACTGTGAGATTGA+TGG - chr4_4:35449086-35449105 None:intergenic 35.0%
AAGTTGAAGTTGAAGCCAAA+TGG - chr4_4:35449203-35449222 None:intergenic 35.0%
TTCATGTCCAACTAATCTAG+TGG + chr4_4:35449436-35449455 Msa0678820:intron 35.0%
TTTGCTTCCACTAGATTAGT+TGG - chr4_4:35449446-35449465 None:intergenic 35.0%
! CTGTCTAGTTGAAGTTCTAA+TGG + chr4_4:35449469-35449488 Msa0678820:intron 35.0%
TTCTCTTCAACATGTACTTG+AGG + chr4_4:35449497-35449516 Msa0678820:intron 35.0%
ATAAGAAAGAGAAGGGTTAC+AGG - chr4_4:35449593-35449612 None:intergenic 35.0%
GAAAGGATGAACTTCAAGAA+AGG - chr4_4:35449711-35449730 None:intergenic 35.0%
GCAAGTTCAAACTATCAAGA+AGG - chr4_4:35449742-35449761 None:intergenic 35.0%
! TCTTGATAGTTTGAACTTGC+AGG + chr4_4:35449742-35449761 Msa0678820:intron 35.0%
! CTTGATAGTTTGAACTTGCA+GGG + chr4_4:35449743-35449762 Msa0678820:intron 35.0%
TTCAAGGTTGGATTTCATTG+TGG - chr4_4:35449886-35449905 None:intergenic 35.0%
TTATGAGGACTCTATCTTCA+AGG - chr4_4:35449902-35449921 None:intergenic 35.0%
TGATTAAGCTTCAATCACTG+GGG - chr4_4:35450055-35450074 None:intergenic 35.0%
GTATCATCAAGGTGATGATA+AGG - chr4_4:35450084-35450103 None:intergenic 35.0%
! GGTTGTGAATTTTACCATCT+TGG - chr4_4:35450370-35450389 None:intergenic 35.0%
TTTGTTGCGTATGTAAACGT+TGG + chr4_4:35450514-35450533 Msa0678820:CDS 35.0%
!! CTATTTCAAATTTGGTGCCA+AGG + chr4_4:35450582-35450601 Msa0678820:CDS 35.0%
TTGTGTATAGGGAATATGGT+TGG + chr4_4:35450672-35450691 Msa0678820:intron 35.0%
TGTGTATAGGGAATATGGTT+GGG + chr4_4:35450673-35450692 Msa0678820:intron 35.0%
AATGTGGGTAACATTTCGAA+CGG + chr4_4:35450732-35450751 Msa0678820:CDS 35.0%
! ACATTAGAGGAGTGTGTTTA+AGG - chr4_4:35450778-35450797 None:intergenic 35.0%
! ATAGTGAGAGTACACATTAG+AGG - chr4_4:35450791-35450810 None:intergenic 35.0%
TAATCAGCCATGGTCTACTA+CGG - chr4_4:35439350-35439369 None:intergenic 40.0%
ACCATGGCTGATTAATAGCA+AGG + chr4_4:35439356-35439375 Msa0678820:five_prime_UTR 40.0%
!! ACCTTGCTATTAATCAGCCA+TGG - chr4_4:35439360-35439379 None:intergenic 40.0%
GGTTCACTTGGTACTAGTAA+AGG - chr4_4:35439710-35439729 None:intergenic 40.0%
!! AGTATTGGTGTTGGTTCACT+TGG - chr4_4:35439722-35439741 None:intergenic 40.0%
GGTTCAAAGCATGAATCAGA+TGG + chr4_4:35439767-35439786 Msa0678820:CDS 40.0%
ATAAGGTACACAATTACCGC+AGG - chr4_4:35439893-35439912 None:intergenic 40.0%
!! CTTTTTAGTGCCAAGACTTG+TGG + chr4_4:35440640-35440659 Msa0678820:intron 40.0%
TTGAGTAGGGACTAATACTC+AGG + chr4_4:35441148-35441167 Msa0678820:intron 40.0%
TGAGTAGGGACTAATACTCA+GGG + chr4_4:35441149-35441168 Msa0678820:intron 40.0%
ATGATGAAACAGTTGGGCAT+GGG + chr4_4:35441326-35441345 Msa0678820:intron 40.0%
ACACTATGTGGACAAGCATT+TGG + chr4_4:35441362-35441381 Msa0678820:intron 40.0%
ACAGTGCTTCTTACATTAGC+CGG + chr4_4:35441428-35441447 Msa0678820:intron 40.0%
! GATGCTGCTGATGCAATTTT+TGG - chr4_4:35441515-35441534 None:intergenic 40.0%
!!! GCAGCATCACTTTTTGTCTT+TGG + chr4_4:35441527-35441546 Msa0678820:intron 40.0%
TCTTCAAGCACAAAGCATAG+TGG + chr4_4:35441601-35441620 Msa0678820:intron 40.0%
GTTATCTACCAAATTGGGCT+TGG + chr4_4:35441683-35441702 Msa0678820:intron 40.0%
!!! CAAATCTTGGTTTTGCTTGC+TGG + chr4_4:35441902-35441921 Msa0678820:CDS 40.0%
GTTACTTCCTCATCCTGAAT+TGG + chr4_4:35441925-35441944 Msa0678820:CDS 40.0%
AGAGAATCAAGAGCCAATTC+AGG - chr4_4:35441941-35441960 None:intergenic 40.0%
GTAAGATAGAAGGGGGATAA+CGG + chr4_4:35442522-35442541 Msa0678820:intron 40.0%
TTTCAGATAGTTCGCTAAGG+AGG + chr4_4:35442661-35442680 Msa0678820:intron 40.0%
ACTAGGAAGATGACAACTCT+TGG + chr4_4:35442704-35442723 Msa0678820:intron 40.0%
TTCTCCATTTCACTGACCAA+TGG - chr4_4:35442951-35442970 None:intergenic 40.0%
!!! GCTACATTTTTTTTGAGCGG+AGG + chr4_4:35443287-35443306 Msa0678820:intron 40.0%
CTTCGGTAAAATACTTACGC+TGG - chr4_4:35443597-35443616 None:intergenic 40.0%
!! TTTGCAATTTGATGACGGGA+AGG + chr4_4:35443620-35443639 Msa0678820:intron 40.0%
!! TTGCAATTTGATGACGGGAA+GGG + chr4_4:35443621-35443640 Msa0678820:intron 40.0%
AATGTCCATCTCTATGTGCA+TGG + chr4_4:35443693-35443712 Msa0678820:intron 40.0%
AAGAACCATGCACATAGAGA+TGG - chr4_4:35443701-35443720 None:intergenic 40.0%
ATGTGGTGTCTGAATCTTGT+TGG - chr4_4:35443831-35443850 None:intergenic 40.0%
ACATACACCGACGCATATTA+GGG - chr4_4:35443987-35444006 None:intergenic 40.0%
GGATGATCACATGCATTCTA+TGG - chr4_4:35444087-35444106 None:intergenic 40.0%
ATATCTCACATTCAAGCAGC+CGG - chr4_4:35444158-35444177 None:intergenic 40.0%
CAAAACCAAAAACCCATGTG+AGG - chr4_4:35444218-35444237 None:intergenic 40.0%
!!! CTCACATGGGTTTTTGGTTT+TGG + chr4_4:35444216-35444235 Msa0678820:intron 40.0%
!!! TTGGTTTTGGTGCTAAGCTT+TGG + chr4_4:35444229-35444248 Msa0678820:intron 40.0%
AAGAGAGAGTTGCCATACTT+TGG + chr4_4:35444528-35444547 Msa0678820:intron 40.0%
AACCATTTGTACCATGCTCT+AGG + chr4_4:35444581-35444600 Msa0678820:intron 40.0%
ACCATTTGTACCATGCTCTA+GGG + chr4_4:35444582-35444601 Msa0678820:intron 40.0%
CTCCTGCGCAAATCAATTTA+TGG - chr4_4:35444620-35444639 None:intergenic 40.0%
!! CATAAATTGATTTGCGCAGG+AGG + chr4_4:35444618-35444637 Msa0678820:intron 40.0%
TACACCATCACCTACAAGTT+GGG + chr4_4:35444953-35444972 Msa0678820:intron 40.0%
ATGCATAAAGCCCAACTTGT+AGG - chr4_4:35444966-35444985 None:intergenic 40.0%
! GAAAAGTATATGTGGTGGAG+TGG + chr4_4:35445153-35445172 Msa0678820:intron 40.0%
!! GTATTTTGGAGAAGGGGAAT+TGG + chr4_4:35445181-35445200 Msa0678820:intron 40.0%
TCCTAAGAATACACATGGTC+TGG + chr4_4:35445291-35445310 Msa0678820:intron 40.0%
TCCAGACCATGTGTATTCTT+AGG - chr4_4:35445295-35445314 None:intergenic 40.0%
GGTGTTCTGATCAATACAGA+TGG - chr4_4:35445408-35445427 None:intergenic 40.0%
GGTAAACAAGGAACAACATG+TGG - chr4_4:35445647-35445666 None:intergenic 40.0%
!! GACATTGTGGTTGGTGATAT+TGG + chr4_4:35445784-35445803 Msa0678820:intron 40.0%
GAAAGACACTTGTGACATTG+TGG - chr4_4:35445822-35445841 None:intergenic 40.0%
!! TACACGTGTGACATTTTGGT+TGG + chr4_4:35445877-35445896 Msa0678820:intron 40.0%
ATGATACTTGGGTGACATTG+TGG - chr4_4:35445925-35445944 None:intergenic 40.0%
!! ACTATTTGGTGCCTAGTTTG+GGG - chr4_4:35446224-35446243 None:intergenic 40.0%
!! GTACTATTTGGTGCCTAGTT+TGG - chr4_4:35446226-35446245 None:intergenic 40.0%
AACCACCATCGAGAAAGATT+TGG + chr4_4:35446291-35446310 Msa0678820:intron 40.0%
TTGCTCCAAATCTTTCTCGA+TGG - chr4_4:35446299-35446318 None:intergenic 40.0%
CGTTCTTCAAAGTCCGATAA+GGG - chr4_4:35446335-35446354 None:intergenic 40.0%
TCGTTCTTCAAAGTCCGATA+AGG - chr4_4:35446336-35446355 None:intergenic 40.0%
GACAACGACGACAATAGATT+GGG + chr4_4:35446369-35446388 Msa0678820:intron 40.0%
GTGAGAGTGAGCAATGAATT+AGG + chr4_4:35446835-35446854 Msa0678820:CDS 40.0%
! ATCAGCTTCATTTTCAGTGG+TGG + chr4_4:35446873-35446892 Msa0678820:CDS 40.0%
ACTTGTGGTGCTTGCATTAA+GGG + chr4_4:35446936-35446955 Msa0678820:CDS 40.0%
ATCAGCTATGTCTTCACAGA+CGG + chr4_4:35446964-35446983 Msa0678820:CDS 40.0%
! AGACAGGTTGAACACCATTT+AGG - chr4_4:35447047-35447066 None:intergenic 40.0%
CGAATTGACACCAATCGAAT+CGG + chr4_4:35447393-35447412 Msa0678820:intron 40.0%
GTGGAAACTTGAATTAAGGG+AGG - chr4_4:35447813-35447832 None:intergenic 40.0%
ATCAAGCACAGAAGCTTGAT+TGG - chr4_4:35447846-35447865 None:intergenic 40.0%
!! CTAAAGCATTGAAGGTTGAC+AGG - chr4_4:35447872-35447891 None:intergenic 40.0%
! GGCTAAGTTCCATTTTCTGA+GGG - chr4_4:35447964-35447983 None:intergenic 40.0%
! AGGCTAAGTTCCATTTTCTG+AGG - chr4_4:35447965-35447984 None:intergenic 40.0%
TGGGAGAAGCAATCATATAG+AGG - chr4_4:35447985-35448004 None:intergenic 40.0%
CAAGAAATCCAGTTCTGCAT+GGG - chr4_4:35448004-35448023 None:intergenic 40.0%
ACTCAAAGAGAAGGAGATAG+AGG - chr4_4:35448078-35448097 None:intergenic 40.0%
CTTTGCACACCATGAAATTG+GGG + chr4_4:35448187-35448206 Msa0678820:intron 40.0%
GAACTTGAATAGGTAACCTG+AGG + chr4_4:35448217-35448236 Msa0678820:intron 40.0%
! TATTCTGATGCTGATTGGTG+TGG - chr4_4:35448266-35448285 None:intergenic 40.0%
TGGCATATTCTGATGCTGAT+TGG - chr4_4:35448271-35448290 None:intergenic 40.0%
ATCAAAGGAACACTGCAGTA+TGG - chr4_4:35448338-35448357 None:intergenic 40.0%
GGAATTTACTGAACTTGCAG+AGG - chr4_4:35448645-35448664 None:intergenic 40.0%
CATGGCGTATATGTGAAGAA+AGG - chr4_4:35448818-35448837 None:intergenic 40.0%
GTCAAATGCAAGTCTAAGCA+TGG - chr4_4:35448836-35448855 None:intergenic 40.0%
ATTCTCTTGTTCCAAGCTCT+TGG + chr4_4:35448884-35448903 Msa0678820:intron 40.0%
! CACACTCTATGGATTGAAAC+AGG - chr4_4:35448912-35448931 None:intergenic 40.0%
CCACCAGGTTTCAAAATCAA+AGG - chr4_4:35448965-35448984 None:intergenic 40.0%
!!! CCTTTGATTTTGAAACCTGG+TGG + chr4_4:35448962-35448981 Msa0678820:intron 40.0%
ATATAGCATGTGGAAGGAAC+TGG - chr4_4:35449060-35449079 None:intergenic 40.0%
! TGGTTGATATAGCATGTGGA+AGG - chr4_4:35449066-35449085 None:intergenic 40.0%
ACAGTCTCTAATCTTGCTAC+TGG + chr4_4:35449094-35449113 Msa0678820:intron 40.0%
AAAGCAAGATTAGTGGCTAC+GGG - chr4_4:35449164-35449183 None:intergenic 40.0%
CAAAGCAAGATTAGTGGCTA+CGG - chr4_4:35449165-35449184 None:intergenic 40.0%
CAAGCACAAAGCAAGATTAG+TGG - chr4_4:35449171-35449190 None:intergenic 40.0%
CACTAATCTTGCTTTGTGCT+TGG + chr4_4:35449169-35449188 Msa0678820:intron 40.0%
!! TCTATTGGTTTCTTGCTAGC+AGG + chr4_4:35449239-35449258 Msa0678820:intron 40.0%
! AAAACTCTAAGGGAGGAAAC+TGG - chr4_4:35449683-35449702 None:intergenic 40.0%
! GGTAAGAAAAACTCTAAGGG+AGG - chr4_4:35449690-35449709 None:intergenic 40.0%
TTTCATTGTGGTGGCAATTC+AGG - chr4_4:35449874-35449893 None:intergenic 40.0%
AAGGTTGGATTTCATTGTGG+TGG - chr4_4:35449883-35449902 None:intergenic 40.0%
GAAAGCTTGTGGAGAAGTTA+TGG - chr4_4:35449949-35449968 None:intergenic 40.0%
!! GAAGTTTGAGTTGATGCAGA+TGG - chr4_4:35450030-35450049 None:intergenic 40.0%
! AGTTAGTTCCAAGGAAGCAT+GGG - chr4_4:35450120-35450139 None:intergenic 40.0%
! GTTGGTTGTTATTACGGGAT+TGG + chr4_4:35450532-35450551 Msa0678820:CDS 40.0%
GGAATATGGTTGGGAATGTT+AGG + chr4_4:35450682-35450701 Msa0678820:CDS 40.0%
ATATGGTTGGGAATGTTAGG+TGG + chr4_4:35450685-35450704 Msa0678820:CDS 40.0%
!! TCGAACGGATTGGAATAATG+AGG + chr4_4:35450747-35450766 Msa0678820:CDS 40.0%
ATGGTCTACTACGGGATGAT+TGG - chr4_4:35439341-35439360 None:intergenic 45.0%
AATCATCCCGTAGTAGACCA+TGG + chr4_4:35439340-35439359 Msa0678820:five_prime_UTR 45.0%
AATCAGCCATGGTCTACTAC+GGG - chr4_4:35439349-35439368 None:intergenic 45.0%
! TTTTTACCTAGCTGCACCTG+CGG + chr4_4:35439874-35439893 Msa0678820:CDS 45.0%
GCTGCTTCCCTTGGAAATAA+TGG + chr4_4:35439977-35439996 Msa0678820:CDS 45.0%
ACTAGTCAACCCACAAGTCT+TGG - chr4_4:35440653-35440672 None:intergenic 45.0%
CATGATGAAACAGTTGGGCA+TGG + chr4_4:35441325-35441344 Msa0678820:intron 45.0%
TGATGAAACAGTTGGGCATG+GGG + chr4_4:35441327-35441346 Msa0678820:intron 45.0%
! AGTGCTGTTGAGACACTATG+TGG + chr4_4:35441350-35441369 Msa0678820:intron 45.0%
GCTGCTGATATGTATGCACT+TGG - chr4_4:35441629-35441648 None:intergenic 45.0%
TCAAGAGCCAATTCAGGATG+AGG - chr4_4:35441935-35441954 None:intergenic 45.0%
CATCCTCCAGCTAAGACTTT+GGG - chr4_4:35443538-35443557 None:intergenic 45.0%
ACATCCTCCAGCTAAGACTT+TGG - chr4_4:35443539-35443558 None:intergenic 45.0%
GTCAGTGAAAAGTGGCATGT+GGG - chr4_4:35443667-35443686 None:intergenic 45.0%
TGTCAGTGAAAAGTGGCATG+TGG - chr4_4:35443668-35443687 None:intergenic 45.0%
!! ATACCACGGTGTTGTCAATG+TGG - chr4_4:35443848-35443867 None:intergenic 45.0%
CACATACACCGACGCATATT+AGG - chr4_4:35443988-35444007 None:intergenic 45.0%
TAAAGTGAGGGATCCTCACA+TGG + chr4_4:35444202-35444221 Msa0678820:intron 45.0%
AAAGTGAGGGATCCTCACAT+GGG + chr4_4:35444203-35444222 Msa0678820:intron 45.0%
GTATCAACCGGTGTAGAACA+TGG + chr4_4:35444256-35444275 Msa0678820:intron 45.0%
!! GGGCCATTGAGCTATTTTCA+AGG - chr4_4:35444375-35444394 None:intergenic 45.0%
AGAGTTGAGGGGTGAAATGA+TGG + chr4_4:35444416-35444435 Msa0678820:intron 45.0%
!! TGAGGGGTGAAATGATGGAT+TGG + chr4_4:35444421-35444440 Msa0678820:intron 45.0%
CCATTTGTACCATGCTCTAG+GGG + chr4_4:35444583-35444602 Msa0678820:intron 45.0%
!! GGCCATAAATTGATTTGCGC+AGG + chr4_4:35444615-35444634 Msa0678820:intron 45.0%
!! GTCATGCTCTCTCTAAAGCA+TGG - chr4_4:35444757-35444776 None:intergenic 45.0%
! CAACTTGTAGGTGATGGTGT+AGG - chr4_4:35444954-35444973 None:intergenic 45.0%
CTACACCATCACCTACAAGT+TGG + chr4_4:35444952-35444971 Msa0678820:intron 45.0%
AAAGCCCAACTTGTAGGTGA+TGG - chr4_4:35444960-35444979 None:intergenic 45.0%
!! TGGAGTGCGTATTTTGGAGA+AGG + chr4_4:35445173-35445192 Msa0678820:intron 45.0%
!! GGAGTGCGTATTTTGGAGAA+GGG + chr4_4:35445174-35445193 Msa0678820:intron 45.0%
!! GAGTGCGTATTTTGGAGAAG+GGG + chr4_4:35445175-35445194 Msa0678820:intron 45.0%
CATCCCATCATCATGGTTAC+GGG - chr4_4:35445267-35445286 None:intergenic 45.0%
CCATCCCATCATCATGGTTA+CGG - chr4_4:35445268-35445287 None:intergenic 45.0%
GGATATCCATCCCATCATCA+TGG - chr4_4:35445274-35445293 None:intergenic 45.0%
ATATGCAGTACCACAGTGTC+TGG + chr4_4:35445516-35445535 Msa0678820:intron 45.0%
TGGACGTTCATGATCTCAGT+TGG + chr4_4:35445540-35445559 Msa0678820:CDS 45.0%
TTGGATTTCAAGCAGCTGCA+AGG + chr4_4:35445559-35445578 Msa0678820:CDS 45.0%
TTTCAAGCAGCTGCAAGGTT+TGG + chr4_4:35445564-35445583 Msa0678820:intron 45.0%
CTACCCGTATTAGAGTCTAG+TGG - chr4_4:35445755-35445774 None:intergenic 45.0%
ACTCTAATACGGGTAGCACT+TGG + chr4_4:35445759-35445778 Msa0678820:intron 45.0%
CTCTAATACGGGTAGCACTT+GGG + chr4_4:35445760-35445779 Msa0678820:intron 45.0%
GACACTTGTGACATTGTGGT+TGG - chr4_4:35445818-35445837 None:intergenic 45.0%
!! GACATTGTGGTTGGTGACAT+TGG - chr4_4:35445912-35445931 None:intergenic 45.0%
TACTTGGGTGACATTGTGGT+TGG - chr4_4:35445921-35445940 None:intergenic 45.0%
!! GAGCACTTGAGGAAGTATTG+TGG - chr4_4:35445948-35445967 None:intergenic 45.0%
! TGGATTTGCTTCCGTGTTGA+CGG - chr4_4:35446149-35446168 None:intergenic 45.0%
ACCAAATAGTACCCTCCTTC+TGG + chr4_4:35446234-35446253 Msa0678820:intron 45.0%
! CTCGATGGTGGTTGTGATTT+AGG - chr4_4:35446284-35446303 None:intergenic 45.0%
CTCCAAATCTTTCTCGATGG+TGG - chr4_4:35446296-35446315 None:intergenic 45.0%
CACAACATCCTGACCCTTAT+CGG + chr4_4:35446319-35446338 Msa0678820:intron 45.0%
TTCAAAGTCCGATAAGGGTC+AGG - chr4_4:35446330-35446349 None:intergenic 45.0%
TATTGTCGTCGTTGTCGTCA+TGG - chr4_4:35446365-35446384 None:intergenic 45.0%
CGACAACGACGACAATAGAT+TGG + chr4_4:35446368-35446387 Msa0678820:intron 45.0%
TTCATTGCTCACTCTCACAC+TGG - chr4_4:35446833-35446852 None:intergenic 45.0%
GTGAGCAATGAATTAGGAGC+AGG + chr4_4:35446841-35446860 Msa0678820:CDS 45.0%
! AGCTTCATTTTCAGTGGTGG+TGG + chr4_4:35446876-35446895 Msa0678820:CDS 45.0%
CACTTGTGGTGCTTGCATTA+AGG + chr4_4:35446935-35446954 Msa0678820:CDS 45.0%
TTAGGACAATGGCAAGAGCA+AGG - chr4_4:35447029-35447048 None:intergenic 45.0%
GCTCTTGCCATTGTCCTAAA+TGG + chr4_4:35447030-35447049 Msa0678820:CDS 45.0%
GGTGTTCAACCTGTCTTATC+TGG + chr4_4:35447051-35447070 Msa0678820:CDS 45.0%
TGTTAGGTAGCTTGAAGCAC+AGG + chr4_4:35447650-35447669 Msa0678820:intron 45.0%
CTTGATTGGCATGAAGGAAG+TGG - chr4_4:35447832-35447851 None:intergenic 45.0%
CAGAAGCTTGATTGGCATGA+AGG - chr4_4:35447838-35447857 None:intergenic 45.0%
TCACTTGCTCCCTCAGAAAA+TGG + chr4_4:35447952-35447971 Msa0678820:intron 45.0%
GCAAGAAATCCAGTTCTGCA+TGG - chr4_4:35448005-35448024 None:intergenic 45.0%
! TGGAAGCATGTCAGGCAATA+TGG - chr4_4:35448112-35448131 None:intergenic 45.0%
! CAAGTTGACAATGCCACAAC+TGG + chr4_4:35448158-35448177 Msa0678820:intron 45.0%
TGCAAAGAAGCAACCAGTTG+TGG - chr4_4:35448174-35448193 None:intergenic 45.0%
! ACCATGAAATTGGGGCATTC+AGG + chr4_4:35448195-35448214 Msa0678820:intron 45.0%
TCCTGAATGCCCCAATTTCA+TGG - chr4_4:35448199-35448218 None:intergenic 45.0%
GGGCATTCAGGAACTTGAAT+AGG + chr4_4:35448207-35448226 Msa0678820:intron 45.0%
TACTGAACTTGCAGAGGGAT+TGG - chr4_4:35448639-35448658 None:intergenic 45.0%
ATTCATGCAGAAGGCTGGTA+TGG - chr4_4:35449140-35449159 None:intergenic 45.0%
AAGCAAGATTAGTGGCTACG+GGG - chr4_4:35449163-35449182 None:intergenic 45.0%
TGCTTGGCTACTTCACCATT+TGG + chr4_4:35449185-35449204 Msa0678820:intron 45.0%
TGGTCTAAAGGCAAGAACGA+TGG - chr4_4:35449663-35449682 None:intergenic 45.0%
! AAGGGAGGAAACTGGTCTAA+AGG - chr4_4:35449675-35449694 None:intergenic 45.0%
GAGGACTCTATCTTCAAGGT+TGG - chr4_4:35449898-35449917 None:intergenic 45.0%
GTGAATCGGATGAAAGCTTG+TGG - chr4_4:35449960-35449979 None:intergenic 45.0%
!! GTTTGAGTTGATGCAGATGG+AGG - chr4_4:35450027-35450046 None:intergenic 45.0%
TTAAGCTTCAATCACTGGGG+AGG - chr4_4:35450052-35450071 None:intergenic 45.0%
AAGAATGTCCCATGCTTCCT+TGG + chr4_4:35450109-35450128 Msa0678820:intron 45.0%
CAGTTAGTTCCAAGGAAGCA+TGG - chr4_4:35450121-35450140 None:intergenic 45.0%
TGTTTGCCATCCACATCCAA+CGG - chr4_4:35450494-35450513 None:intergenic 45.0%
! TTACGGGATTGGCATACCTT+TGG + chr4_4:35450543-35450562 Msa0678820:CDS 45.0%
! TACGGGATTGGCATACCTTT+GGG + chr4_4:35450544-35450563 Msa0678820:CDS 45.0%
ATACCTTTGGGTGCAGTTCT+TGG + chr4_4:35450556-35450575 Msa0678820:CDS 45.0%
AAACCAAGAACTGCACCCAA+AGG - chr4_4:35450562-35450581 None:intergenic 45.0%
GGGTAACATTTCGAACGGAT+TGG + chr4_4:35450737-35450756 Msa0678820:CDS 45.0%
!!! ATTTAAAATAAAAAAATTTG+AGG - chr4_4:35440302-35440321 None:intergenic 5.0%
!!! TTATTTTTGTTAAAATATTT+AGG - chr4_4:35440353-35440372 None:intergenic 5.0%
!!! TAAGTAAATTTTTTTTTATA+GGG - chr4_4:35440812-35440831 None:intergenic 5.0%
!!! ATAAGTAAATTTTTTTTTAT+AGG - chr4_4:35440813-35440832 None:intergenic 5.0%
!!! ATTCTTAATTTTTTATTATA+TGG - chr4_4:35442799-35442818 None:intergenic 5.0%
CACACTCCCAAAGTCTTAGC+TGG + chr4_4:35443529-35443548 Msa0678820:intron 50.0%
ACTCCCAAAGTCTTAGCTGG+AGG + chr4_4:35443532-35443551 Msa0678820:intron 50.0%
ACACCACATTGACAACACCG+TGG + chr4_4:35443842-35443861 Msa0678820:intron 50.0%
AGAGGTGGATCTCCTGTATC+TGG + chr4_4:35443954-35443973 Msa0678820:intron 50.0%
GAGGTGGATCTCCTGTATCT+GGG + chr4_4:35443955-35443974 Msa0678820:intron 50.0%
GCAACCTCCCTAATATGCGT+CGG + chr4_4:35443977-35443996 Msa0678820:intron 50.0%
TACACCGACGCATATTAGGG+AGG - chr4_4:35443984-35444003 None:intergenic 50.0%
TTGTACCGCATGGAGATGTC+CGG + chr4_4:35444136-35444155 Msa0678820:intron 50.0%
! GGGATCCTCACATGGGTTTT+TGG + chr4_4:35444210-35444229 Msa0678820:intron 50.0%
GATGAAGTTCTTGAGCGCGA+TGG - chr4_4:35444298-35444317 None:intergenic 50.0%
CCCCTAGAGCATGGTACAAA+TGG - chr4_4:35444586-35444605 None:intergenic 50.0%
TCAAACAAGCCCCTAGAGCA+TGG - chr4_4:35444595-35444614 None:intergenic 50.0%
!! ATGCTCTAGGGGCTTGTTTG+AGG + chr4_4:35444594-35444613 Msa0678820:intron 50.0%
CGACAGGTTCACGTCAATTG+TGG - chr4_4:35444930-35444949 None:intergenic 50.0%
! GTGGAGTGGAGTGCGTATTT+TGG + chr4_4:35445167-35445186 Msa0678820:intron 50.0%
AGCACCCGTAACCATGATGA+TGG + chr4_4:35445260-35445279 Msa0678820:intron 50.0%
GCACCCGTAACCATGATGAT+GGG + chr4_4:35445261-35445280 Msa0678820:intron 50.0%
!! CCGTAACCATGATGATGGGA+TGG + chr4_4:35445265-35445284 Msa0678820:intron 50.0%
GTAGCACTTGGGTGACATTG+TGG + chr4_4:35445771-35445790 Msa0678820:intron 50.0%
CACTTGGGTGACATTGTGGT+TGG + chr4_4:35445775-35445794 Msa0678820:intron 50.0%
GACGTCTTCATTGCGGTGAA+TGG + chr4_4:35446118-35446137 Msa0678820:intron 50.0%
GAATGGACCAACCGTCAACA+CGG + chr4_4:35446135-35446154 Msa0678820:intron 50.0%
! TTTGCTTCCGTGTTGACGGT+TGG - chr4_4:35446145-35446164 None:intergenic 50.0%
CATCCTCTTGCTGCAACGAA+CGG + chr4_4:35446174-35446193 Msa0678820:intron 50.0%
ACTCTTTCGAGCCCCAAACT+AGG + chr4_4:35446210-35446229 Msa0678820:intron 50.0%
!! GCCAGAAGGAGGGTACTATT+TGG - chr4_4:35446238-35446257 None:intergenic 50.0%
TGTCTTCACAGACGGTGAAG+AGG + chr4_4:35446972-35446991 Msa0678820:CDS 50.0%
ACAATGGCAAGAGCAAGGAG+TGG - chr4_4:35447024-35447043 None:intergenic 50.0%
!! CATTAAGGCGCCGATTCGAT+TGG - chr4_4:35447406-35447425 None:intergenic 50.0%
GTCTGCAAGCTACAGCTCAA+TGG + chr4_4:35447899-35447918 Msa0678820:intron 50.0%
GCTACAGCTCAATGGAGCAA+TGG + chr4_4:35447907-35447926 Msa0678820:intron 50.0%
CTGAGGGAGCAAGTGAACAA+GGG - chr4_4:35447948-35447967 None:intergenic 50.0%
TCTGAGGGAGCAAGTGAACA+AGG - chr4_4:35447949-35447968 None:intergenic 50.0%
TTGCTTCTCCCATGCAGAAC+TGG + chr4_4:35447993-35448012 Msa0678820:intron 50.0%
! AGGGTGTATGGAAGCATGTC+AGG - chr4_4:35448120-35448139 None:intergenic 50.0%
!! CAGGATAGAAAGAGCACCTC+AGG - chr4_4:35448236-35448255 None:intergenic 50.0%
TGATTGGTGTGGAGACAAGC+AGG - chr4_4:35448255-35448274 None:intergenic 50.0%
TGAAACAGGCACCAAGAGCT+TGG - chr4_4:35448898-35448917 None:intergenic 50.0%
GTGTATGTGACACAACCACC+AGG - chr4_4:35448980-35448999 None:intergenic 50.0%
GTTGGGAATGTTAGGTGGCA+CGG + chr4_4:35450690-35450709 Msa0678820:CDS 50.0%
CAATTACCGCAGGTGCAGCT+AGG - chr4_4:35439883-35439902 None:intergenic 55.0%
GTGAAAAGTGGCATGTGGGC+AGG - chr4_4:35443663-35443682 None:intergenic 55.0%
TAGGGAGGTTGCCCAGATAC+AGG - chr4_4:35443969-35443988 None:intergenic 55.0%
ATCGCAGTCACTCGACATGG+TGG - chr4_4:35444351-35444370 None:intergenic 55.0%
GGTATCGCAGTCACTCGACA+TGG - chr4_4:35444354-35444373 None:intergenic 55.0%
! AGGTGATGGTGTAGGTCGAC+AGG - chr4_4:35444946-35444965 None:intergenic 55.0%
GCAGTACCACAGTGTCTGGA+TGG + chr4_4:35445520-35445539 Msa0678820:intron 55.0%
GAACGTCCATCCAGACACTG+TGG - chr4_4:35445529-35445548 None:intergenic 55.0%
TGCAGCAAGAGGATGGTACG+TGG - chr4_4:35446169-35446188 None:intergenic 55.0%
CGTTCGTTGCAGCAAGAGGA+TGG - chr4_4:35446176-35446195 None:intergenic 55.0%
ATAGTACCCTCCTTCTGGCG+TGG + chr4_4:35446239-35446258 Msa0678820:intron 55.0%
ACTTCCTTCTCCACGCCAGA+AGG - chr4_4:35446252-35446271 None:intergenic 55.0%
GCTACGGGGATTCATGCAGA+AGG - chr4_4:35449149-35449168 None:intergenic 55.0%
TACATGAAAGGGGTGGCCGT+TGG + chr4_4:35450475-35450494 Msa0678820:intron 55.0%
!! GAGCTTGCTGCTGCTTCCCT+TGG + chr4_4:35439968-35439987 Msa0678820:CDS 60.0%
!! GATGACGGGAAGGGACATGC+AGG + chr4_4:35443630-35443649 Msa0678820:intron 60.0%
AGCAGCCGGACATCTCCATG+CGG - chr4_4:35444144-35444163 None:intergenic 60.0%
GCAGTCACTCGACATGGTGG+TGG - chr4_4:35444348-35444367 None:intergenic 60.0%
CTGCCGTTCGTTGCAGCAAG+AGG - chr4_4:35446180-35446199 None:intergenic 60.0%
CCTTCTCCACGCCAGAAGGA+GGG - chr4_4:35446248-35446267 None:intergenic 60.0%
TCCTTCTCCACGCCAGAAGG+AGG - chr4_4:35446249-35446268 None:intergenic 60.0%
CGGGGATTCATGCAGAAGGC+TGG - chr4_4:35449145-35449164 None:intergenic 60.0%
AAAGGGGTGGCCGTTGGATG+TGG + chr4_4:35450481-35450500 Msa0678820:intron 60.0%
CCCTCCTTCTGGCGTGGAGA+AGG + chr4_4:35446245-35446264 Msa0678820:intron 65.0%
GGGTGGCCGTTGGATGTGGA+TGG + chr4_4:35450485-35450504 Msa0678820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 35439332 35450900 35439332 ID=Msa0678820;Name=Msa0678820
chr4_4 mRNA 35439332 35450900 35439332 ID=Msa0678820-mRNA-1;Parent=Msa0678820;Name=Msa0678820-mRNA-1;_AED=0.29;_eAED=0.29;_QI=336|0.8|0.83|1|1|1|6|120|353
chr4_4 exon 35439332 35440027 35439332 ID=Msa0678820-mRNA-1:exon:8430;Parent=Msa0678820-mRNA-1
chr4_4 exon 35441782 35441969 35441782 ID=Msa0678820-mRNA-1:exon:8431;Parent=Msa0678820-mRNA-1
chr4_4 exon 35445524 35445580 35445524 ID=Msa0678820-mRNA-1:exon:8432;Parent=Msa0678820-mRNA-1
chr4_4 exon 35446834 35447072 35446834 ID=Msa0678820-mRNA-1:exon:8433;Parent=Msa0678820-mRNA-1
chr4_4 exon 35450485 35450603 35450485 ID=Msa0678820-mRNA-1:exon:8434;Parent=Msa0678820-mRNA-1
chr4_4 exon 35450682 35450900 35450682 ID=Msa0678820-mRNA-1:exon:8435;Parent=Msa0678820-mRNA-1
chr4_4 five_prime_UTR 35439332 35439667 35439332 ID=Msa0678820-mRNA-1:five_prime_utr;Parent=Msa0678820-mRNA-1
chr4_4 CDS 35439668 35440027 35439668 ID=Msa0678820-mRNA-1:cds;Parent=Msa0678820-mRNA-1
chr4_4 CDS 35441782 35441969 35441782 ID=Msa0678820-mRNA-1:cds;Parent=Msa0678820-mRNA-1
chr4_4 CDS 35445524 35445580 35445524 ID=Msa0678820-mRNA-1:cds;Parent=Msa0678820-mRNA-1
chr4_4 CDS 35446834 35447072 35446834 ID=Msa0678820-mRNA-1:cds;Parent=Msa0678820-mRNA-1
chr4_4 CDS 35450485 35450603 35450485 ID=Msa0678820-mRNA-1:cds;Parent=Msa0678820-mRNA-1
chr4_4 CDS 35450682 35450780 35450682 ID=Msa0678820-mRNA-1:cds;Parent=Msa0678820-mRNA-1
chr4_4 three_prime_UTR 35450781 35450900 35450781 ID=Msa0678820-mRNA-1:three_prime_utr;Parent=Msa0678820-mRNA-1
Gene Sequence

>Msa0678820

ATGGCTACTTCTACACATGTTAACAAAGATATTGATGAACCTTTACTAGTACCAAGTGAACCAACACCAATACTACTATCATCATTCACTCATTCATTTGGTTCAAAGCATGAATCAGATGGTGAACTTGAACGAATACTCTCAGATACAAGTGTTCCTTTTGTGAAACGTATTAGACATGCTACATGGGTTGAATTTAAGCTACTTTTTTACCTAGCTGCACCTGCGGTAATTGTGTACCTTATCAATTATGTGATGTCAATGTCTACTCAAATATTTTCTGGTCATCTTGGTAATTTGGAGCTTGCTGCTGCTTCCCTTGGAAATAATGGTATCCAAATATTTGCTTATGGACTCATGAGTGAAAAGTGTAAGCATACTTGGAAAGGGTTTAGTTTTCAAGCTTTTTCAGGGTTGCCAGAGTTTTTTAAATTGTCAGCTGCTTCAGCTGTGATGTTGTGTTTAGAGACTTGGTACTTTCAAATCTTGGTTTTGCTTGCTGGGTTACTTCCTCATCCTGAATTGGCTCTTGATTCTCTTTCTATTTGTACCACAGTGTCTGGATGGACGTTCATGATCTCAGTTGGATTTCAAGCAGCTGCAAGTGTGAGAGTGAGCAATGAATTAGGAGCAGGAAATTCAAAATCAGCTTCATTTTCAGTGGTGGTGGTAACAGTGATTTCTTTCATAATATGTGCAATTATAGCACTTGTGGTGCTTGCATTAAGGGATGTTATCAGCTATGTCTTCACAGACGGTGAAGAGGTTGCTGCTGCTGTCTCAGATCTCAGTCCACTCCTTGCTCTTGCCATTGTCCTAAATGGTGTTCAACCTGTCTTATCTGGGGTGGCCGTTGGATGTGGATGGCAAACATTTGTTGCGTATGTAAACGTTGGTTGTTATTACGGGATTGGCATACCTTTGGGTGCAGTTCTTGGTTTCTATTTCAAATTTGGTGCCAAGGGAATATGGTTGGGAATGTTAGGTGGCACGGTTTTGCAAACAATTATTTTAATGTGGGTAACATTTCGAACGGATTGGAATAATGAGGTAAAACCTTAA
Protein sequence

>Msa0678820

MATSTHVNKDIDEPLLVPSEPTPILLSSFTHSFGSKHESDGELERILSDTSVPFVKRIRHATWVEFKLLFYLAAPAVIVYLINYVMSMSTQIFSGHLGNLELAAASLGNNGIQIFAYGLMSEKCKHTWKGFSFQAFSGLPEFFKLSAASAVMLCLETWYFQILVLLAGLLPHPELALDSLSICTTVSGWTFMISVGFQAAASVRVSNELGAGNSKSASFSVVVVTVISFIICAIIALVVLALRDVISYVFTDGEEVAAAVSDLSPLLALAIVLNGVQPVLSGVAVGCGWQTFVAYVNVGCYYGIGIPLGAVLGFYFKFGAKGIWLGMLGGTVLQTIILMWVTFRTDWNNEVKP*