Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445110 | XP_039688242.1 | 64.088 | 181 | 63 | 2 | 1 | 179 | 6 | 186 | 3.69e-73 | 236 |
| Msa0445110 | XP_039688242.1 | 97.927 | 193 | 4 | 0 | 183 | 375 | 2 | 194 | 4.09e-135 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445110 | sp|Q9SS03|DIR21_ARATH | 48.077 | 156 | 77 | 1 | 33 | 184 | 32 | 187 | 3.26e-41 | 146 |
| Msa0445110 | sp|Q9SS03|DIR21_ARATH | 41.615 | 161 | 92 | 1 | 216 | 374 | 29 | 189 | 6.29e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445110 | A0A396IMV9 | 64.088 | 181 | 63 | 2 | 1 | 179 | 6 | 186 | 1.76e-73 | 236 |
| Msa0445110 | A0A396IMV9 | 97.927 | 193 | 4 | 0 | 183 | 375 | 2 | 194 | 1.95e-135 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0445110 | Msa0492550 | 0.995986 | 4.341260e-222 | -8.615850e-47 |
| Msa0445110 | Msa1269820 | 0.962627 | 4.196822e-121 | -8.615850e-47 |
| Msa0345330 | Msa0445110 | 0.889615 | 2.066367e-73 | -8.615850e-47 |
| Msa0345410 | Msa0445110 | 0.892805 | 1.130602e-74 | -8.615850e-47 |
| Msa0350620 | Msa0445110 | 0.871172 | 8.369106e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445110 | MtrunA17_Chr3g0085301 | 97.927 | 193 | 4 | 0 | 183 | 375 | 2 | 194 | 3.76e-139 | 394 |
| Msa0445110 | MtrunA17_Chr3g0085301 | 64.088 | 181 | 63 | 2 | 1 | 179 | 6 | 186 | 3.39e-77 | 236 |
| Msa0445110 | MtrunA17_Chr3g0085291 | 95.531 | 179 | 8 | 0 | 1 | 179 | 1 | 179 | 7.72e-124 | 354 |
| Msa0445110 | MtrunA17_Chr3g0085291 | 62.434 | 189 | 69 | 2 | 187 | 375 | 1 | 187 | 1.35e-79 | 242 |
| Msa0445110 | MtrunA17_Chr3g0085311 | 90.608 | 181 | 15 | 1 | 1 | 179 | 1 | 181 | 2.11e-116 | 336 |
| Msa0445110 | MtrunA17_Chr3g0085311 | 62.963 | 189 | 70 | 0 | 187 | 375 | 1 | 189 | 3.25e-82 | 249 |
| Msa0445110 | MtrunA17_Chr3g0085321 | 78.307 | 189 | 41 | 0 | 187 | 375 | 1 | 189 | 3.29e-106 | 310 |
| Msa0445110 | MtrunA17_Chr3g0085321 | 60.104 | 193 | 70 | 2 | 1 | 191 | 1 | 188 | 6.18e-76 | 233 |
| Msa0445110 | MtrunA17_Chr3g0090231 | 68.280 | 186 | 54 | 1 | 189 | 374 | 4 | 184 | 2.08e-90 | 270 |
| Msa0445110 | MtrunA17_Chr3g0090231 | 60.112 | 178 | 64 | 2 | 4 | 179 | 5 | 177 | 3.92e-69 | 215 |
| Msa0445110 | MtrunA17_Chr4g0040551 | 68.280 | 186 | 54 | 1 | 189 | 374 | 4 | 184 | 1.79e-89 | 267 |
| Msa0445110 | MtrunA17_Chr4g0040551 | 61.494 | 174 | 60 | 2 | 8 | 179 | 9 | 177 | 1.81e-70 | 219 |
| Msa0445110 | MtrunA17_Chr7g0259101 | 41.714 | 350 | 184 | 7 | 43 | 374 | 45 | 392 | 1.85e-77 | 244 |
| Msa0445110 | MtrunA17_Chr1g0177051 | 51.553 | 161 | 74 | 3 | 216 | 374 | 27 | 185 | 1.40e-45 | 154 |
| Msa0445110 | MtrunA17_Chr1g0177051 | 46.893 | 177 | 85 | 4 | 10 | 179 | 4 | 178 | 3.07e-45 | 154 |
| Msa0445110 | MtrunA17_Chr4g0005081 | 48.993 | 149 | 67 | 2 | 29 | 168 | 30 | 178 | 9.04e-44 | 150 |
| Msa0445110 | MtrunA17_Chr4g0005081 | 42.308 | 182 | 96 | 3 | 202 | 374 | 15 | 196 | 3.18e-38 | 135 |
| Msa0445110 | MtrunA17_Chr4g0005071 | 46.980 | 149 | 70 | 2 | 29 | 168 | 29 | 177 | 1.37e-41 | 144 |
| Msa0445110 | MtrunA17_Chr4g0005071 | 46.309 | 149 | 76 | 2 | 229 | 374 | 48 | 195 | 2.00e-35 | 128 |
| Msa0445110 | MtrunA17_Chr1g0175911 | 48.649 | 148 | 72 | 3 | 229 | 374 | 46 | 191 | 1.64e-40 | 141 |
| Msa0445110 | MtrunA17_Chr1g0175911 | 49.219 | 128 | 61 | 1 | 43 | 166 | 46 | 173 | 1.41e-37 | 134 |
| Msa0445110 | MtrunA17_Chr4g0005031 | 43.030 | 165 | 85 | 2 | 29 | 184 | 54 | 218 | 1.23e-39 | 140 |
| Msa0445110 | MtrunA17_Chr4g0005031 | 47.297 | 148 | 76 | 1 | 229 | 374 | 73 | 220 | 1.70e-37 | 134 |
| Msa0445110 | MtrunA17_Chr4g0005041 | 47.260 | 146 | 73 | 2 | 43 | 184 | 50 | 195 | 2.24e-38 | 136 |
| Msa0445110 | MtrunA17_Chr4g0005041 | 44.595 | 148 | 80 | 1 | 229 | 374 | 50 | 197 | 1.15e-35 | 129 |
| Msa0445110 | MtrunA17_Chr7g0243501 | 42.391 | 184 | 98 | 3 | 7 | 184 | 8 | 189 | 8.89e-38 | 134 |
| Msa0445110 | MtrunA17_Chr7g0243501 | 39.157 | 166 | 100 | 1 | 210 | 374 | 26 | 191 | 3.59e-34 | 125 |
| Msa0445110 | MtrunA17_Chr7g0259091 | 52.344 | 128 | 56 | 2 | 43 | 165 | 45 | 172 | 9.11e-38 | 134 |
| Msa0445110 | MtrunA17_Chr7g0259091 | 37.824 | 193 | 115 | 3 | 185 | 374 | 3 | 193 | 2.16e-35 | 128 |
| Msa0445110 | MtrunA17_Chr7g0259071 | 50.000 | 128 | 59 | 2 | 43 | 165 | 42 | 169 | 2.25e-37 | 133 |
| Msa0445110 | MtrunA17_Chr7g0259071 | 43.709 | 151 | 78 | 4 | 229 | 374 | 42 | 190 | 6.55e-32 | 119 |
| Msa0445110 | MtrunA17_Chr4g0037481 | 42.759 | 145 | 75 | 3 | 39 | 177 | 41 | 183 | 1.22e-35 | 129 |
| Msa0445110 | MtrunA17_Chr4g0037481 | 38.255 | 149 | 89 | 1 | 229 | 374 | 43 | 191 | 1.05e-29 | 113 |
| Msa0445110 | MtrunA17_Chr4g0005011 | 47.656 | 128 | 63 | 1 | 43 | 166 | 51 | 178 | 1.89e-35 | 128 |
| Msa0445110 | MtrunA17_Chr4g0005011 | 43.151 | 146 | 79 | 2 | 229 | 372 | 51 | 194 | 3.94e-33 | 122 |
| Msa0445110 | MtrunA17_Chr4g0005111 | 43.902 | 123 | 66 | 1 | 43 | 162 | 43 | 165 | 1.40e-33 | 123 |
| Msa0445110 | MtrunA17_Chr4g0005111 | 37.838 | 185 | 113 | 2 | 192 | 374 | 5 | 189 | 5.94e-33 | 122 |
| Msa0445110 | MtrunA17_Chr3g0136631 | 45.038 | 131 | 65 | 2 | 43 | 166 | 38 | 168 | 1.88e-30 | 115 |
| Msa0445110 | MtrunA17_Chr3g0136631 | 38.411 | 151 | 88 | 2 | 229 | 374 | 38 | 188 | 2.74e-27 | 106 |
| Msa0445110 | MtrunA17_Chr7g0259121 | 43.871 | 155 | 76 | 4 | 229 | 374 | 40 | 192 | 9.32e-30 | 114 |
| Msa0445110 | MtrunA17_Chr7g0259121 | 46.617 | 133 | 62 | 3 | 43 | 166 | 40 | 172 | 2.04e-29 | 113 |
| Msa0445110 | MtrunA17_Chr5g0446751 | 37.640 | 178 | 103 | 2 | 10 | 179 | 4 | 181 | 2.18e-29 | 112 |
| Msa0445110 | MtrunA17_Chr5g0446751 | 36.970 | 165 | 94 | 4 | 217 | 374 | 27 | 188 | 3.04e-26 | 103 |
| Msa0445110 | MtrunA17_Chr3g0136641 | 45.038 | 131 | 64 | 3 | 43 | 166 | 38 | 167 | 3.05e-29 | 112 |
| Msa0445110 | MtrunA17_Chr3g0136641 | 32.836 | 201 | 117 | 5 | 178 | 374 | 1 | 187 | 4.82e-24 | 97.8 |
| Msa0445110 | MtrunA17_Chr4g0005131 | 42.520 | 127 | 68 | 1 | 46 | 167 | 45 | 171 | 9.34e-29 | 110 |
| Msa0445110 | MtrunA17_Chr4g0005131 | 39.726 | 146 | 85 | 2 | 232 | 374 | 45 | 190 | 4.31e-28 | 108 |
| Msa0445110 | MtrunA17_Chr4g0068391 | 32.620 | 187 | 108 | 4 | 190 | 374 | 9 | 179 | 5.67e-22 | 92.0 |
| Msa0445110 | MtrunA17_Chr4g0068391 | 32.738 | 168 | 93 | 3 | 3 | 166 | 8 | 159 | 2.48e-18 | 82.0 |
| Msa0445110 | MtrunA17_Chr4g0024951 | 34.507 | 142 | 91 | 1 | 236 | 375 | 37 | 178 | 1.28e-21 | 90.9 |
| Msa0445110 | MtrunA17_Chr4g0024951 | 32.353 | 136 | 88 | 1 | 48 | 179 | 35 | 170 | 3.58e-16 | 75.9 |
| Msa0445110 | MtrunA17_Chr4g0024961 | 32.895 | 152 | 100 | 1 | 226 | 375 | 27 | 178 | 2.95e-21 | 90.1 |
| Msa0445110 | MtrunA17_Chr4g0024961 | 30.822 | 146 | 97 | 1 | 38 | 179 | 25 | 170 | 8.73e-17 | 77.4 |
| Msa0445110 | MtrunA17_Chr4g0005091 | 33.333 | 183 | 106 | 2 | 194 | 374 | 6 | 174 | 5.09e-21 | 89.4 |
| Msa0445110 | MtrunA17_Chr4g0005091 | 33.333 | 135 | 72 | 2 | 36 | 166 | 34 | 154 | 4.75e-15 | 72.8 |
| Msa0445110 | MtrunA17_Chr4g0068381 | 36.000 | 150 | 84 | 3 | 232 | 374 | 35 | 179 | 2.56e-19 | 84.7 |
| Msa0445110 | MtrunA17_Chr4g0068381 | 35.537 | 121 | 74 | 1 | 46 | 162 | 35 | 155 | 4.94e-17 | 78.2 |
| Msa0445110 | MtrunA17_Chr1g0169281 | 33.663 | 101 | 66 | 1 | 250 | 350 | 129 | 228 | 1.12e-11 | 64.7 |
| Msa0445110 | MtrunA17_Chr1g0169511 | 34.579 | 107 | 67 | 2 | 244 | 350 | 119 | 222 | 1.14e-11 | 64.3 |
| Msa0445110 | MtrunA17_Chr1g0169291 | 35.000 | 100 | 64 | 1 | 251 | 350 | 124 | 222 | 2.44e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0445110 | AT1G65870.1 | 48.077 | 156 | 77 | 1 | 33 | 184 | 32 | 187 | 3.32e-42 | 146 |
| Msa0445110 | AT1G65870.1 | 41.615 | 161 | 92 | 1 | 216 | 374 | 29 | 189 | 6.39e-41 | 143 |
| Msa0445110 | AT5G42500.1 | 47.552 | 143 | 71 | 1 | 28 | 166 | 25 | 167 | 3.53e-42 | 146 |
| Msa0445110 | AT5G42500.1 | 42.581 | 155 | 85 | 3 | 222 | 374 | 33 | 185 | 2.89e-38 | 135 |
| Msa0445110 | AT1G22900.1 | 40.884 | 181 | 99 | 3 | 196 | 374 | 19 | 193 | 3.77e-42 | 146 |
| Msa0445110 | AT1G22900.1 | 45.455 | 143 | 74 | 1 | 28 | 166 | 33 | 175 | 4.31e-38 | 135 |
| Msa0445110 | AT5G42510.1 | 42.581 | 155 | 85 | 3 | 222 | 374 | 30 | 182 | 6.11e-38 | 135 |
| Msa0445110 | AT5G42510.1 | 46.429 | 140 | 71 | 2 | 31 | 166 | 25 | 164 | 1.07e-37 | 134 |
| Msa0445110 | AT2G21100.1 | 44.776 | 134 | 70 | 1 | 39 | 168 | 36 | 169 | 3.73e-37 | 133 |
| Msa0445110 | AT2G21100.1 | 40.260 | 154 | 88 | 2 | 224 | 374 | 35 | 187 | 2.29e-32 | 120 |
| Msa0445110 | AT2G21100.2 | 44.776 | 134 | 70 | 1 | 39 | 168 | 36 | 169 | 3.73e-37 | 133 |
| Msa0445110 | AT2G21100.2 | 40.260 | 154 | 88 | 2 | 224 | 374 | 35 | 187 | 2.29e-32 | 120 |
| Msa0445110 | AT1G55210.1 | 48.031 | 127 | 65 | 1 | 43 | 168 | 42 | 168 | 1.00e-34 | 126 |
| Msa0445110 | AT1G55210.1 | 40.816 | 147 | 79 | 3 | 229 | 368 | 42 | 187 | 2.56e-27 | 107 |
| Msa0445110 | AT1G55210.2 | 48.031 | 127 | 65 | 1 | 43 | 168 | 42 | 168 | 1.00e-34 | 126 |
| Msa0445110 | AT1G55210.2 | 40.816 | 147 | 79 | 3 | 229 | 368 | 42 | 187 | 2.56e-27 | 107 |
| Msa0445110 | AT3G13650.1 | 43.357 | 143 | 80 | 1 | 43 | 184 | 41 | 183 | 1.25e-34 | 126 |
| Msa0445110 | AT3G13650.1 | 36.986 | 146 | 91 | 1 | 229 | 374 | 41 | 185 | 2.27e-28 | 109 |
| Msa0445110 | AT5G49040.1 | 47.656 | 128 | 63 | 1 | 43 | 166 | 43 | 170 | 1.44e-34 | 126 |
| Msa0445110 | AT5G49040.1 | 41.406 | 128 | 73 | 1 | 229 | 354 | 43 | 170 | 1.86e-27 | 107 |
| Msa0445110 | AT1G58170.1 | 39.412 | 170 | 93 | 2 | 1 | 166 | 1 | 164 | 1.52e-34 | 126 |
| Msa0445110 | AT1G58170.1 | 36.757 | 185 | 109 | 3 | 192 | 374 | 6 | 184 | 1.88e-31 | 118 |
| Msa0445110 | AT5G49030.3 | 47.656 | 128 | 63 | 1 | 43 | 166 | 43 | 170 | 2.61e-31 | 126 |
| Msa0445110 | AT5G49030.3 | 41.406 | 128 | 73 | 1 | 229 | 354 | 43 | 170 | 5.69e-25 | 107 |
| Msa0445110 | AT3G13662.1 | 46.400 | 125 | 66 | 1 | 43 | 166 | 40 | 164 | 7.88e-31 | 115 |
| Msa0445110 | AT3G13662.1 | 41.270 | 126 | 73 | 1 | 229 | 354 | 40 | 164 | 6.62e-25 | 100 |
| Msa0445110 | AT3G58090.1 | 51.429 | 105 | 51 | 0 | 80 | 184 | 165 | 269 | 7.96e-28 | 110 |
| Msa0445110 | AT3G58090.1 | 45.794 | 107 | 58 | 0 | 268 | 374 | 165 | 271 | 9.62e-26 | 105 |
| Msa0445110 | AT4G38700.1 | 44.776 | 134 | 64 | 3 | 43 | 166 | 36 | 169 | 2.03e-27 | 107 |
| Msa0445110 | AT4G38700.1 | 37.662 | 154 | 88 | 3 | 229 | 374 | 36 | 189 | 1.56e-25 | 102 |
| Msa0445110 | AT2G21110.1 | 36.000 | 150 | 90 | 1 | 231 | 374 | 36 | 185 | 3.48e-25 | 101 |
| Msa0445110 | AT2G21110.1 | 31.111 | 180 | 103 | 3 | 9 | 179 | 11 | 178 | 5.49e-24 | 98.2 |
| Msa0445110 | AT3G13660.1 | 37.705 | 122 | 76 | 0 | 63 | 184 | 1 | 122 | 3.69e-22 | 91.3 |
| Msa0445110 | AT3G13660.1 | 38.462 | 117 | 72 | 0 | 258 | 374 | 8 | 124 | 2.70e-20 | 86.3 |
| Msa0445110 | AT4G11210.1 | 28.877 | 187 | 116 | 6 | 1 | 185 | 1 | 172 | 3.71e-15 | 73.6 |
| Msa0445110 | AT4G11210.1 | 28.022 | 182 | 121 | 6 | 194 | 372 | 5 | 179 | 5.47e-12 | 64.3 |
Find 67 sgRNAs with CRISPR-Local
Find 657 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTACTGCTAAGAGTGTT+TGG | 0.319714 | 3_3:-18855224 | Msa0445110:CDS |
| TTCTACTACCATGACATTAG+AGG | 0.326685 | 3_3:-18846379 | Msa0445110:CDS |
| CAAAATGTAGCTAATGGATT+TGG | 0.329364 | 3_3:-18846316 | Msa0445110:CDS |
| TTGGCGGCACCGGCGTGTTT+AGG | 0.334517 | 3_3:-18855260 | Msa0445110:CDS |
| TACTCAACAACATAATGTTC+AGG | 0.352386 | 3_3:+18846004 | None:intergenic |
| ACGTCTATTGTTGGTGGAAC+TGG | 0.364219 | 3_3:-18846085 | Msa0445110:CDS |
| TCAGTGCTTTGTTGATTTGT+TGG | 0.368171 | 3_3:+18855600 | None:intergenic |
| CTGCCTATTGTTGGCGGCAC+CGG | 0.371881 | 3_3:-18855270 | Msa0445110:CDS |
| CCATCAAATACAGTTGGGTT+TGG | 0.383222 | 3_3:-18855501 | Msa0445110:CDS |
| CCGGCGTGTTTAGGTTTGCT+AGG | 0.384387 | 3_3:-18855251 | Msa0445110:CDS |
| TAATGTCATGGTAGTAGAAA+TGG | 0.395728 | 3_3:+18846383 | None:intergenic |
| AGCTCAAGGGATGTTTGGTT+TGG | 0.396536 | 3_3:-18855412 | Msa0445110:CDS |
| ACGCCGGTGCCGCCAACAAT+AGG | 0.397084 | 3_3:+18855267 | None:intergenic |
| CCAAACCCAACTGTATTTGA+TGG | 0.400788 | 3_3:+18855501 | None:intergenic |
| GGAAGAGCTCAAGGGATGTT+TGG | 0.401132 | 3_3:-18846232 | Msa0445110:CDS |
| ACACCACAAAATGTAGCTAA+TGG | 0.410009 | 3_3:-18846322 | Msa0445110:CDS |
| TCTCTAACCGTGTCTTGAAC+AGG | 0.414606 | 3_3:+18855294 | None:intergenic |
| TGCTACTGCTAAGAGTGTTT+GGG | 0.423437 | 3_3:-18855223 | Msa0445110:CDS |
| GCTCTTGTCCTTCAGTTAAG+AGG | 0.424118 | 3_3:+18855457 | None:intergenic |
| CTTCTCTATAGTTTGTTGTT+CGG | 0.426647 | 3_3:+18846417 | None:intergenic |
| GGTAGAGCTCAAGGGATGTT+TGG | 0.428431 | 3_3:-18855417 | Msa0445110:CDS |
| TTTAATGAAGGGAAATATGC+TGG | 0.436425 | 3_3:-18846160 | Msa0445110:CDS |
| ATAATGTTCAGGGGTAGAAA+TGG | 0.442235 | 3_3:+18846015 | None:intergenic |
| GGAAGCACTCTTAGTATGTT+GGG | 0.448120 | 3_3:-18846139 | Msa0445110:CDS |
| CGGCGTGTTTAGGTTTGCTA+GGG | 0.449156 | 3_3:-18855250 | Msa0445110:CDS |
| CTCTATAGTTTGTTGTTCGG+AGG | 0.455137 | 3_3:+18846420 | None:intergenic |
| TCAATAATTTGTACAACCGT+TGG | 0.456883 | 3_3:+18855525 | None:intergenic |
| GGTAGTACTCTTAGTATGCT+TGG | 0.469670 | 3_3:-18855324 | Msa0445110:CDS |
| TAACATGATGTTGAATTGTT+CGG | 0.474733 | 3_3:+18855623 | None:intergenic |
| GTTAGAGAACTGCCTATTGT+TGG | 0.476698 | 3_3:-18855279 | Msa0445110:CDS |
| ATTAATCTTGCTTTCACCGA+TGG | 0.478192 | 3_3:-18855357 | Msa0445110:CDS |
| AGAGTGTATGATGATAAATA+TGG | 0.480301 | 3_3:-18846185 | Msa0445110:CDS |
| ATTGATCCATCAAATACAGT+TGG | 0.481548 | 3_3:-18855507 | Msa0445110:CDS |
| TTGATCCATCAAATACAGTT+GGG | 0.483436 | 3_3:-18855506 | Msa0445110:CDS |
| AATAGAGAAACGTCTATTGT+TGG | 0.491021 | 3_3:-18846094 | Msa0445110:CDS |
| TGGAAGCACTCTTAGTATGT+TGG | 0.496447 | 3_3:-18846140 | Msa0445110:CDS |
| AAACCTGTCGGTAGAGCTCA+AGG | 0.523725 | 3_3:-18855426 | Msa0445110:CDS |
| CAATGATTTGTAACATGGTG+GGG | 0.525613 | 3_3:+18846347 | None:intergenic |
| GTTTGGAGCAAGTTACATGA+TGG | 0.529133 | 3_3:-18855484 | Msa0445110:CDS |
| ACTCAACAACATAATGTTCA+GGG | 0.541128 | 3_3:+18846005 | None:intergenic |
| AGAGAACTGCCTATTGTTGG+CGG | 0.541168 | 3_3:-18855276 | Msa0445110:CDS |
| AAACACATTGGAAGAGCTCA+AGG | 0.544060 | 3_3:-18846241 | Msa0445110:CDS |
| ATCCCTTGAGCTCTACCGAC+AGG | 0.544812 | 3_3:+18855423 | None:intergenic |
| GTACTCTTAGTATGCTTGGA+AGG | 0.545035 | 3_3:-18855320 | Msa0445110:CDS |
| TCTATAGTTTGTTGTTCGGA+GGG | 0.557097 | 3_3:+18846421 | None:intergenic |
| TCAATGATTTGTAACATGGT+GGG | 0.580239 | 3_3:+18846346 | None:intergenic |
| TTGTTCGGAGAACACTCCAT+TGG | 0.582295 | 3_3:+18855638 | None:intergenic |
| AGAGAAACGTCTATTGTTGG+TGG | 0.583087 | 3_3:-18846091 | Msa0445110:CDS |
| ATGGACAACCTCTTAACTGA+AGG | 0.591801 | 3_3:-18855465 | Msa0445110:CDS |
| TTGGCATCTTTGCATGATCG+TGG | 0.594187 | 3_3:-18855393 | Msa0445110:CDS |
| ATCTTTGCATGATCGTGGAA+TGG | 0.599273 | 3_3:-18855388 | Msa0445110:CDS |
| GTCAATGATTTGTAACATGG+TGG | 0.600362 | 3_3:+18846345 | None:intergenic |
| GCACTCTTAGTATGTTGGGA+AGG | 0.604095 | 3_3:-18846135 | Msa0445110:CDS |
| GAATTAAGTTCAAAACACAT+TGG | 0.623480 | 3_3:-18846253 | Msa0445110:CDS |
| GAGCTAACATCAAAACCTGT+CGG | 0.634037 | 3_3:-18855438 | Msa0445110:CDS |
| TTGAGTGGAAATGAGTGTGA+GGG | 0.637117 | 3_3:+18846492 | None:intergenic |
| CTCAACAACATAATGTTCAG+GGG | 0.650457 | 3_3:+18846006 | None:intergenic |
| GTTGAGTGGAAATGAGTGTG+AGG | 0.650989 | 3_3:+18846491 | None:intergenic |
| ATTTGTGGTTGTTAGTTGAG+TGG | 0.655245 | 3_3:+18846477 | None:intergenic |
| ATGGATGATGCAATGACTGA+AGG | 0.670753 | 3_3:-18846280 | Msa0445110:CDS |
| GGCGTGTTTAGGTTTGCTAG+GGG | 0.673525 | 3_3:-18855249 | Msa0445110:CDS |
| AAGGAATCCTGTTCAAGACA+CGG | 0.674439 | 3_3:-18855301 | Msa0445110:CDS |
| AACACATTGGAAGAGCTCAA+GGG | 0.674782 | 3_3:-18846240 | Msa0445110:CDS |
| TGTGTCAATGATTTGTAACA+TGG | 0.675813 | 3_3:+18846342 | None:intergenic |
| ACTACCAGCAAAATCACCAT+CGG | 0.683340 | 3_3:+18855341 | None:intergenic |
| AACCTGTCGGTAGAGCTCAA+GGG | 0.694023 | 3_3:-18855425 | Msa0445110:CDS |
| CCTAGCAAACCTAAACACGC+CGG | 0.714305 | 3_3:+18855251 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTAATTTTTAT+TGG | - | chr3_3:18847409-18847428 | Msa0445110:intron | 0.0% |
| !!! | TTATTTTTATTTTTTATATA+AGG | - | chr3_3:18848466-18848485 | Msa0445110:intron | 0.0% |
| !! | AGATAACATATTAAATTTAT+TGG | - | chr3_3:18848239-18848258 | Msa0445110:intron | 10.0% |
| !!! | TGTTGATTTTTTATTTTTTA+AGG | + | chr3_3:18851062-18851081 | None:intergenic | 10.0% |
| !!! | TATTATAATGCATATTTTTA+TGG | - | chr3_3:18851575-18851594 | Msa0445110:intron | 10.0% |
| !!! | TTTTAGATATTCTTATTTTT+GGG | - | chr3_3:18852166-18852185 | Msa0445110:intron | 10.0% |
| !!! | AACTGAATTTGTTTTTATTT+TGG | + | chr3_3:18846713-18846732 | None:intergenic | 15.0% |
| !!! | TATTCTAATCACATTAATTT+TGG | - | chr3_3:18847211-18847230 | Msa0445110:intron | 15.0% |
| !! | AGAAATATTGTATTGAAAAA+TGG | + | chr3_3:18847487-18847506 | None:intergenic | 15.0% |
| !!! | AATTTTGTTACCTATAATAA+TGG | - | chr3_3:18847925-18847944 | Msa0445110:intron | 15.0% |
| !!! | TATAGAATTTTAACTATTCA+TGG | + | chr3_3:18847953-18847972 | None:intergenic | 15.0% |
| !!! | ATCAATTTTGTAATGAAAAA+AGG | - | chr3_3:18848438-18848457 | Msa0445110:intron | 15.0% |
| !! | GTTATGATAAGATAATTTAT+AGG | + | chr3_3:18848947-18848966 | None:intergenic | 15.0% |
| !! | TACAAAAAAACTTAAATGAT+AGG | - | chr3_3:18849981-18850000 | Msa0445110:intron | 15.0% |
| !!! | TTGTAGTAAATTAGTTTTTT+AGG | + | chr3_3:18850391-18850410 | None:intergenic | 15.0% |
| !! | TTATGCTAAATAATACAAAA+AGG | + | chr3_3:18850460-18850479 | None:intergenic | 15.0% |
| !!! | TCAAAATTTTCAATAATGTA+TGG | + | chr3_3:18850853-18850872 | None:intergenic | 15.0% |
| !!! | AAAAATTTTCTCAAAGAAAA+TGG | - | chr3_3:18851503-18851522 | Msa0445110:intron | 15.0% |
| !!! | ATTTTTTTTTCTATATACCT+TGG | - | chr3_3:18851628-18851647 | Msa0445110:intron | 15.0% |
| !!! | ATTGTTTACAATTGTTATTT+CGG | + | chr3_3:18851871-18851890 | None:intergenic | 15.0% |
| !!! | TTTTTTTGTGACTAATAAAT+CGG | + | chr3_3:18852062-18852081 | None:intergenic | 15.0% |
| !! | CAAAAATAAGAATATCTAAA+AGG | + | chr3_3:18852167-18852186 | None:intergenic | 15.0% |
| !!! | CTTTTAGATATTCTTATTTT+TGG | - | chr3_3:18852165-18852184 | Msa0445110:intron | 15.0% |
| !!! | AAAAAAATAGAACTTTTTTG+AGG | - | chr3_3:18855027-18855046 | Msa0445110:intron | 15.0% |
| !!! | ATAAATATGGTTTTTAATGA+AGG | - | chr3_3:18855512-18855531 | Msa0445110:CDS | 15.0% |
| !!! | TAAATATGGTTTTTAATGAA+GGG | - | chr3_3:18855513-18855532 | Msa0445110:CDS | 15.0% |
| !!! | AACATATTATGTACCTTTTA+GGG | - | chr3_3:18846613-18846632 | Msa0445110:intron | 20.0% |
| !! | AATGTTATAGAGAAAAAACT+AGG | + | chr3_3:18846912-18846931 | None:intergenic | 20.0% |
| !! | TGAATTGAGAATAACAATTA+AGG | + | chr3_3:18847556-18847575 | None:intergenic | 20.0% |
| !!! | TGTCGTTTTAGTATTTTTAA+GGG | - | chr3_3:18847739-18847758 | Msa0445110:intron | 20.0% |
| !! | GCAATAAAATAGGAATATAT+TGG | - | chr3_3:18848277-18848296 | Msa0445110:intron | 20.0% |
| !! | ATAAAATAGGAATATATTGG+TGG | - | chr3_3:18848280-18848299 | Msa0445110:intron | 20.0% |
| !!! | GATTAAAATGAAGGTATAAT+AGG | - | chr3_3:18848302-18848321 | Msa0445110:intron | 20.0% |
| !!! | AAAAATACACTTCACTATTT+TGG | - | chr3_3:18848337-18848356 | Msa0445110:intron | 20.0% |
| !!! | ATAGACTTTAGTTTTCTATT+GGG | + | chr3_3:18848547-18848566 | None:intergenic | 20.0% |
| !!! | AATAGACTTTAGTTTTCTAT+TGG | + | chr3_3:18848548-18848567 | None:intergenic | 20.0% |
| !! | AAATTAAGGCAATAAGTTTA+TGG | - | chr3_3:18848879-18848898 | Msa0445110:intron | 20.0% |
| !! | ATTATCTTATCATAACAAGT+TGG | - | chr3_3:18848951-18848970 | Msa0445110:intron | 20.0% |
| !! | ATAAGAAACTATGAAAAACT+AGG | + | chr3_3:18850241-18850260 | None:intergenic | 20.0% |
| !!! | CTTATAATTTTGTTAGTGAT+AGG | - | chr3_3:18850256-18850275 | Msa0445110:intron | 20.0% |
| !!! | ATATTTACAGAGATTTTTCA+AGG | + | chr3_3:18850991-18851010 | None:intergenic | 20.0% |
| !! | TTGAAAAATCTCTGTAAATA+TGG | - | chr3_3:18850990-18851009 | Msa0445110:intron | 20.0% |
| !! | ACACAAATATTATTTCCAAA+AGG | - | chr3_3:18851079-18851098 | Msa0445110:intron | 20.0% |
| !! | CACAAATATTATTTCCAAAA+GGG | - | chr3_3:18851080-18851099 | Msa0445110:intron | 20.0% |
| !!! | TAACACTTTTTATGCTTTTA+AGG | + | chr3_3:18851186-18851205 | None:intergenic | 20.0% |
| !!! | ATGATTATGCAATGTTTTAT+GGG | + | chr3_3:18851298-18851317 | None:intergenic | 20.0% |
| !!! | AAGTTATATTCGTAGATTTT+CGG | - | chr3_3:18851395-18851414 | Msa0445110:intron | 20.0% |
| !! | AGTAAACTTGTAACAAATAT+AGG | + | chr3_3:18851446-18851465 | None:intergenic | 20.0% |
| !! | GTTATTCCTAGAAATAAATT+TGG | - | chr3_3:18851683-18851702 | Msa0445110:intron | 20.0% |
| !!! | AGTTTACCAAATTTATTTCT+AGG | + | chr3_3:18851692-18851711 | None:intergenic | 20.0% |
| !!! | CTAATGTGATCAATTTATTT+TGG | + | chr3_3:18851845-18851864 | None:intergenic | 20.0% |
| !!! | TTAAGAAATTAAGAGAGTAT+AGG | + | chr3_3:18852004-18852023 | None:intergenic | 20.0% |
| !! | AATAAGAATATCTAAAAGGT+TGG | + | chr3_3:18852163-18852182 | None:intergenic | 20.0% |
| !!! | CAGTTATTTCAAAAATCAAA+TGG | - | chr3_3:18852565-18852584 | Msa0445110:intron | 20.0% |
| !!! | TTTGAACTCTTTTATAGTAA+AGG | + | chr3_3:18852662-18852681 | None:intergenic | 20.0% |
| !! | TATGATCAACTATATATACT+AGG | - | chr3_3:18853096-18853115 | Msa0445110:intron | 20.0% |
| !! | GGAATATTTATGTGATATTA+AGG | - | chr3_3:18853117-18853136 | Msa0445110:intron | 20.0% |
| !!! | TAGGTTTGTTTTTTGTTAAT+TGG | - | chr3_3:18853222-18853241 | Msa0445110:intron | 20.0% |
| !!! | ATTATTTTCCTAAAAGAGTT+CGG | - | chr3_3:18854160-18854179 | Msa0445110:intron | 20.0% |
| !! | AAAATAGAAAACACATTTGT+CGG | + | chr3_3:18854351-18854370 | None:intergenic | 20.0% |
| !! | CATAAACAAAATTTATTCTG+AGG | - | chr3_3:18855110-18855129 | Msa0445110:intron | 20.0% |
| ! | TAACATGATGTTGAATTGTT+CGG | + | chr3_3:18846064-18846083 | None:intergenic | 25.0% |
| !! | ATGGTAAAAAAAGTGCAAAT+GGG | + | chr3_3:18846118-18846137 | None:intergenic | 25.0% |
| !! | GAACATATTATGTACCTTTT+AGG | - | chr3_3:18846612-18846631 | Msa0445110:intron | 25.0% |
| !!! | TGTTTTATTTGAGTTTGTGT+TGG | - | chr3_3:18846673-18846692 | Msa0445110:intron | 25.0% |
| !! | CTATAACATTTTCTTCGATT+AGG | - | chr3_3:18846922-18846941 | Msa0445110:intron | 25.0% |
| ! | CAATAACGCTAAAAATATAG+AGG | + | chr3_3:18847308-18847327 | None:intergenic | 25.0% |
| ! | TACTAAAACGACAGTTAAAT+CGG | + | chr3_3:18847732-18847751 | None:intergenic | 25.0% |
| !!! | CTGTCGTTTTAGTATTTTTA+AGG | - | chr3_3:18847738-18847757 | Msa0445110:intron | 25.0% |
| ! | AGATAAGAGTAATTGACAAA+GGG | + | chr3_3:18847783-18847802 | None:intergenic | 25.0% |
| ! | AAGATAAGAGTAATTGACAA+AGG | + | chr3_3:18847784-18847803 | None:intergenic | 25.0% |
| ! | ATTCATGGAACCATTATTAT+AGG | + | chr3_3:18847938-18847957 | None:intergenic | 25.0% |
| ! | ATACTCCATAAATGTTCAAA+AGG | - | chr3_3:18848048-18848067 | Msa0445110:intron | 25.0% |
| !! | TTCTTCCTTTTGAACATTTA+TGG | + | chr3_3:18848056-18848075 | None:intergenic | 25.0% |
| !!! | ATATTGGTGGATTAAAATGA+AGG | - | chr3_3:18848293-18848312 | Msa0445110:intron | 25.0% |
| ! | AAACGACACTTGAAAAAAAA+CGG | - | chr3_3:18848373-18848392 | Msa0445110:intron | 25.0% |
| ! | ATCATGTTGTATATGATCTT+CGG | + | chr3_3:18848818-18848837 | None:intergenic | 25.0% |
| ! | TATTAGCTAAATTACACTAG+AGG | - | chr3_3:18848920-18848939 | Msa0445110:intron | 25.0% |
| !!! | TAAGTTTTTTTGTACCACTT+AGG | + | chr3_3:18849975-18849994 | None:intergenic | 25.0% |
| ! | AAACTTAAATGATAGGATCA+TGG | - | chr3_3:18849988-18850007 | Msa0445110:intron | 25.0% |
| !! | TTGATAGTATTGTTATTGTG+CGG | - | chr3_3:18850050-18850069 | Msa0445110:intron | 25.0% |
| !! | TTTTCTTCATTCCTTTCTAA+CGG | + | chr3_3:18850128-18850147 | None:intergenic | 25.0% |
| ! | ATGATTGTTTATTTGAGTGA+TGG | + | chr3_3:18850903-18850922 | None:intergenic | 25.0% |
| !! | TCATATTTTCTCTGTAAATG+TGG | - | chr3_3:18850919-18850938 | Msa0445110:intron | 25.0% |
| !!! | GTTTTTCCTTTTTTTGGAAA+GGG | + | chr3_3:18851275-18851294 | None:intergenic | 25.0% |
| !! | TGATTATGCAATGTTTTATG+GGG | + | chr3_3:18851297-18851316 | None:intergenic | 25.0% |
| !! | GATGATTATGCAATGTTTTA+TGG | + | chr3_3:18851299-18851318 | None:intergenic | 25.0% |
| ! | TCATTACAAGAAATAGAACA+TGG | - | chr3_3:18851320-18851339 | Msa0445110:intron | 25.0% |
| !! | AGTTATATTCGTAGATTTTC+GGG | - | chr3_3:18851396-18851415 | Msa0445110:intron | 25.0% |
| !! | GAGAAAATTTTTATATTCCC+AGG | + | chr3_3:18851495-18851514 | None:intergenic | 25.0% |
| !! | AATTTTCTCAAAGAAAATGG+TGG | - | chr3_3:18851506-18851525 | Msa0445110:intron | 25.0% |
| !! | ATTTTCTCAAAGAAAATGGT+GGG | - | chr3_3:18851507-18851526 | Msa0445110:intron | 25.0% |
| ! | GAAATTATTCTCATCTTCAT+GGG | + | chr3_3:18851542-18851561 | None:intergenic | 25.0% |
| ! | TGAAATTATTCTCATCTTCA+TGG | + | chr3_3:18851543-18851562 | None:intergenic | 25.0% |
| !!! | ATGCATATTTTTATGGTTTC+TGG | - | chr3_3:18851582-18851601 | Msa0445110:intron | 25.0% |
| !!! | TGCATATTTTTATGGTTTCT+GGG | - | chr3_3:18851583-18851602 | Msa0445110:intron | 25.0% |
| !! | AAGATGAGAATTTTATTCCA+AGG | + | chr3_3:18851648-18851667 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGGTGTCTGAAT+CGG | + | chr3_3:18851833-18851852 | None:intergenic | 25.0% |
| ! | ACAATTAACCAAAACTTAGT+TGG | - | chr3_3:18851886-18851905 | Msa0445110:intron | 25.0% |
| !!! | AAAACATTTTGGTTTAGAGA+TGG | - | chr3_3:18852405-18852424 | Msa0445110:intron | 25.0% |
| !!! | AAACATTTTGGTTTAGAGAT+GGG | - | chr3_3:18852406-18852425 | Msa0445110:intron | 25.0% |
| ! | CATGGAAAAATTTCGTATTA+AGG | + | chr3_3:18852434-18852453 | None:intergenic | 25.0% |
| !! | TAATACGAAATTTTTCCATG+CGG | - | chr3_3:18852434-18852453 | Msa0445110:intron | 25.0% |
| ! | GAATAGAATTGAAGATTTAG+AGG | - | chr3_3:18852478-18852497 | Msa0445110:intron | 25.0% |
| ! | CAAATTAATAACATTGGCAT+GGG | + | chr3_3:18852593-18852612 | None:intergenic | 25.0% |
| ! | AGGAACCAAATTAATAACAT+TGG | + | chr3_3:18852599-18852618 | None:intergenic | 25.0% |
| ! | GTCATGAATTATATCAAGAA+GGG | - | chr3_3:18852746-18852765 | Msa0445110:intron | 25.0% |
| ! | AATATTACACTTATCCCTAA+AGG | - | chr3_3:18852817-18852836 | Msa0445110:intron | 25.0% |
| ! | CATATAATGAATGATCTCAA+TGG | + | chr3_3:18853016-18853035 | None:intergenic | 25.0% |
| ! | TGAGATCATTCATTATATGA+AGG | - | chr3_3:18853017-18853036 | Msa0445110:intron | 25.0% |
| ! | ATGTGATATTAAGGTTCAAA+TGG | - | chr3_3:18853126-18853145 | Msa0445110:intron | 25.0% |
| ! | TGTGATATTAAGGTTCAAAT+GGG | - | chr3_3:18853127-18853146 | Msa0445110:intron | 25.0% |
| !! | AATTGTCAAAGTGTCTATTA+GGG | - | chr3_3:18853633-18853652 | Msa0445110:intron | 25.0% |
| ! | AAGTTTGTAATTGTGATATG+TGG | + | chr3_3:18853851-18853870 | None:intergenic | 25.0% |
| ! | TATCACAATTACAAACTTGA+TGG | - | chr3_3:18853853-18853872 | Msa0445110:intron | 25.0% |
| !! | CATTTTTAATACTCCACTAT+TGG | - | chr3_3:18853943-18853962 | Msa0445110:intron | 25.0% |
| ! | TTGGAACAATATCATTGAAT+CGG | - | chr3_3:18854449-18854468 | Msa0445110:intron | 25.0% |
| ! | ATTTAGTAACCTTTGATGTT+AGG | - | chr3_3:18854908-18854927 | Msa0445110:intron | 25.0% |
| ! | ACTAATTAACCTAACATCAA+AGG | + | chr3_3:18854920-18854939 | None:intergenic | 25.0% |
| ! | GAGAGCAATGTTATATATAT+AGG | + | chr3_3:18855076-18855095 | None:intergenic | 25.0% |
| !! | AACAAAATTTATTCTGAGGA+AGG | - | chr3_3:18855114-18855133 | Msa0445110:intron | 25.0% |
| !!! | ATTTGGTTCAACTTTTATGA+TGG | - | chr3_3:18855385-18855404 | Msa0445110:CDS | 25.0% |
| !!! | ATGTGTTTTGAACTTAATTC+TGG | + | chr3_3:18855431-18855450 | None:intergenic | 25.0% |
| ! | GAATTAAGTTCAAAACACAT+TGG | - | chr3_3:18855431-18855450 | Msa0445110:CDS | 25.0% |
| ! | AGAGTGTATGATGATAAATA+TGG | - | chr3_3:18855499-18855518 | Msa0445110:CDS | 25.0% |
| !!! | TCTCTATTTTGTTTGGTAAT+AGG | + | chr3_3:18855578-18855597 | None:intergenic | 25.0% |
| !!! | GTATTTTTAGATTTGCTAGA+GGG | - | chr3_3:18855621-18855640 | Msa0445110:CDS | 25.0% |
| ! | CATGGTAAAAAAAGTGCAAA+TGG | + | chr3_3:18846119-18846138 | None:intergenic | 30.0% |
| ! | TTTTACCATGACATCTTAGA+AGG | - | chr3_3:18846129-18846148 | Msa0445110:CDS | 30.0% |
| !!! | TTTTACCTTCTAAGATGTCA+TGG | + | chr3_3:18846137-18846156 | None:intergenic | 30.0% |
| CTTAGAAGGTAAAAATCCAA+CGG | - | chr3_3:18846143-18846162 | Msa0445110:CDS | 30.0% | |
| ! | TCAATAATTTGTACAACCGT+TGG | + | chr3_3:18846162-18846181 | None:intergenic | 30.0% |
| ATTGATCCATCAAATACAGT+TGG | - | chr3_3:18846177-18846196 | Msa0445110:CDS | 30.0% | |
| TTGATCCATCAAATACAGTT+GGG | - | chr3_3:18846178-18846197 | Msa0445110:CDS | 30.0% | |
| !!! | ACCTTTTAGGGTTTTGATTT+CGG | - | chr3_3:18846625-18846644 | Msa0445110:intron | 30.0% |
| !!! | TTATTTTGGTATTAGCCTAG+TGG | + | chr3_3:18846699-18846718 | None:intergenic | 30.0% |
| TTCATTGCTCAAAATGTTGA+GGG | + | chr3_3:18846737-18846756 | None:intergenic | 30.0% | |
| GTTATAGAGAAAAAACTAGG+CGG | + | chr3_3:18846909-18846928 | None:intergenic | 30.0% | |
| ! | TAACATTTTCTTCGATTAGG+AGG | - | chr3_3:18846925-18846944 | Msa0445110:intron | 30.0% |
| !!! | TATTTCTAGACATTTTGTCG+TGG | - | chr3_3:18847239-18847258 | Msa0445110:intron | 30.0% |
| GTCGTGGTATTCTAATAATT+TGG | - | chr3_3:18847255-18847274 | Msa0445110:intron | 30.0% | |
| TGGTGAAAAGTGATGAATTA+AGG | + | chr3_3:18847467-18847486 | None:intergenic | 30.0% | |
| !! | GAAATGCTAAAAAGTGTCTT+TGG | + | chr3_3:18847534-18847553 | None:intergenic | 30.0% |
| AAGAAACTTGTATGAATGCA+TGG | - | chr3_3:18847594-18847613 | Msa0445110:intron | 30.0% | |
| GAAAGACACTTAAAAAGGAA+CGG | + | chr3_3:18847690-18847709 | None:intergenic | 30.0% | |
| CACTAGAAAGACACTTAAAA+AGG | + | chr3_3:18847695-18847714 | None:intergenic | 30.0% | |
| !! | TTTTAAGTGTCTTTCTAGTG+CGG | - | chr3_3:18847695-18847714 | Msa0445110:intron | 30.0% |
| ! | GAAAGTGTGTGCAATAAAAT+AGG | - | chr3_3:18848267-18848286 | Msa0445110:intron | 30.0% |
| ! | GAGGGAGTAATTTTTAAACT+TGG | - | chr3_3:18848395-18848414 | Msa0445110:intron | 30.0% |
| TTTATATAAGGCCAAGAGAA+AGG | - | chr3_3:18848478-18848497 | Msa0445110:intron | 30.0% | |
| TATTGGGTGTCAATCTAATT+GGG | + | chr3_3:18848531-18848550 | None:intergenic | 30.0% | |
| ! | TAAAGAGCTTTTCTTGAACT+GGG | + | chr3_3:18848640-18848659 | None:intergenic | 30.0% |
| AATTGTACATCTGTTGTCAA+AGG | - | chr3_3:18848676-18848695 | Msa0445110:intron | 30.0% | |
| TTATGTGTCAAAAGTCTTCT+TGG | + | chr3_3:18848733-18848752 | None:intergenic | 30.0% | |
| GAAGGCTTATAAGAATTGTT+AGG | - | chr3_3:18849180-18849199 | Msa0445110:intron | 30.0% | |
| AAGATGCATCTTGTTGATAT+GGG | + | chr3_3:18849211-18849230 | None:intergenic | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | - | chr3_3:18849216-18849235 | Msa0445110:intron | 30.0% |
| GAAGGCTTATAAGAATTGTT+AGG | - | chr3_3:18849180-18849199 | Msa0445110:intron | 30.0% | |
| AAGATGCATCTTGTTGATAT+GGG | + | chr3_3:18849211-18849230 | None:intergenic | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | - | chr3_3:18849216-18849235 | Msa0445110:intron | 30.0% |
| !! | TATAGGTTGATGCATACATA+AGG | + | chr3_3:18850093-18850112 | None:intergenic | 30.0% |
| AACGGATACAATGCTTATAT+AGG | + | chr3_3:18850110-18850129 | None:intergenic | 30.0% | |
| CAAGTTGCTTCTTTAATGAT+AGG | + | chr3_3:18850291-18850310 | None:intergenic | 30.0% | |
| ! | TTAACCTGTCTGAAATAAAG+TGG | + | chr3_3:18850792-18850811 | None:intergenic | 30.0% |
| ! | AGTTATCCAACTTTGTTTGT+AGG | - | chr3_3:18850812-18850831 | Msa0445110:intron | 30.0% |
| ! | GTTATCCAACTTTGTTTGTA+GGG | - | chr3_3:18850813-18850832 | Msa0445110:intron | 30.0% |
| ! | TATAGAAAAATTTGTTCCCG+AGG | + | chr3_3:18850946-18850965 | None:intergenic | 30.0% |
| TATAGAAAAAATTGTTCCCG+AGG | + | chr3_3:18851017-18851036 | None:intergenic | 30.0% | |
| !! | TCCAAAAGGGTAATTTTAAC+CGG | - | chr3_3:18851093-18851112 | Msa0445110:intron | 30.0% |
| !!! | GGTTTTTCCTTTTTTTGGAA+AGG | + | chr3_3:18851276-18851295 | None:intergenic | 30.0% |
| ! | TATGGGGTTTTTCCTTTTTT+TGG | + | chr3_3:18851281-18851300 | None:intergenic | 30.0% |
| ATTCTCATCTTTATGTTCCA+AGG | - | chr3_3:18851657-18851676 | Msa0445110:intron | 30.0% | |
| ! | TTTCTAGGAATAACATTCCT+TGG | + | chr3_3:18851677-18851696 | None:intergenic | 30.0% |
| ! | ATCCAAAGCACATTGATTAA+AGG | + | chr3_3:18851728-18851747 | None:intergenic | 30.0% |
| ! | TTTAGAGACCAACTAAGTTT+TGG | + | chr3_3:18851897-18851916 | None:intergenic | 30.0% |
| ! | AACTTAGTTGGTCTCTAAAT+CGG | - | chr3_3:18851898-18851917 | Msa0445110:intron | 30.0% |
| ! | AGAAATTAAGAGAGTATAGG+CGG | + | chr3_3:18852001-18852020 | None:intergenic | 30.0% |
| ! | TTTTGTGACTAATAAATCGG+TGG | + | chr3_3:18852059-18852078 | None:intergenic | 30.0% |
| TGATGTAGAGACTGAAAATT+TGG | - | chr3_3:18852229-18852248 | Msa0445110:intron | 30.0% | |
| CTGAAAATTTGGTCTCTAAA+AGG | - | chr3_3:18852240-18852259 | Msa0445110:intron | 30.0% | |
| ! | AACAGAGAGCAAAAACATTT+TGG | - | chr3_3:18852394-18852413 | Msa0445110:intron | 30.0% |
| !!! | AACATTTTGGTTTAGAGATG+GGG | - | chr3_3:18852407-18852426 | Msa0445110:intron | 30.0% |
| AGAATTGAAGATTTAGAGGA+TGG | - | chr3_3:18852482-18852501 | Msa0445110:intron | 30.0% | |
| CCAAATTAATAACATTGGCA+TGG | + | chr3_3:18852594-18852613 | None:intergenic | 30.0% | |
| CCATGCCAATGTTATTAATT+TGG | - | chr3_3:18852591-18852610 | Msa0445110:intron | 30.0% | |
| GGTCATGAATTATATCAAGA+AGG | - | chr3_3:18852745-18852764 | Msa0445110:intron | 30.0% | |
| TTGATAGATTTGACATGAGT+CGG | + | chr3_3:18852799-18852818 | None:intergenic | 30.0% | |
| TATATGAAGGCAAAAGCTAA+AGG | - | chr3_3:18853030-18853049 | Msa0445110:intron | 30.0% | |
| ATATGAAGGCAAAAGCTAAA+GGG | - | chr3_3:18853031-18853050 | Msa0445110:intron | 30.0% | |
| ATTCAGTCTTCGTTAATGTT+AGG | - | chr3_3:18853203-18853222 | Msa0445110:intron | 30.0% | |
| ! | GATAAGATGTATTGACATGT+TGG | - | chr3_3:18853283-18853302 | Msa0445110:intron | 30.0% |
| ATGTTACAACATCACACTTA+AGG | + | chr3_3:18853463-18853482 | None:intergenic | 30.0% | |
| GTGTGATGTTGTAACATTTA+AGG | - | chr3_3:18853466-18853485 | Msa0445110:intron | 30.0% | |
| AATAGACACTTTGACAATTG+CGG | + | chr3_3:18853632-18853651 | None:intergenic | 30.0% | |
| ! | CAATTGTCAAAGTGTCTATT+AGG | - | chr3_3:18853632-18853651 | Msa0445110:intron | 30.0% |
| TTGGATCAAGTAGTAGTATA+TGG | - | chr3_3:18853693-18853712 | Msa0445110:intron | 30.0% | |
| ! | TGGAGTATTAAAAATGCTTC+TGG | + | chr3_3:18853939-18853958 | None:intergenic | 30.0% |
| ATTAATGATGTGTGTATACC+TGG | - | chr3_3:18853974-18853993 | Msa0445110:intron | 30.0% | |
| GGACATTATGAATCATGATT+TGG | - | chr3_3:18854041-18854060 | Msa0445110:intron | 30.0% | |
| AAGAAATTCTTAACCTTTGG+TGG | + | chr3_3:18854123-18854142 | None:intergenic | 30.0% | |
| CACAAGAAATTCTTAACCTT+TGG | + | chr3_3:18854126-18854145 | None:intergenic | 30.0% | |
| CAAAGGTTAAGAATTTCTTG+TGG | - | chr3_3:18854124-18854143 | Msa0445110:intron | 30.0% | |
| AAAACTATATGTGAACGTGA+AGG | - | chr3_3:18854474-18854493 | Msa0445110:intron | 30.0% | |
| AGTACGATTTCGAATATGTT+GGG | + | chr3_3:18854526-18854545 | None:intergenic | 30.0% | |
| TAGTACGATTTCGAATATGT+TGG | + | chr3_3:18854527-18854546 | None:intergenic | 30.0% | |
| ATATTCGAAATCGTACTACT+AGG | - | chr3_3:18854529-18854548 | Msa0445110:intron | 30.0% | |
| GACATTACATTTATACCTGT+TGG | + | chr3_3:18854598-18854617 | None:intergenic | 30.0% | |
| ! | TTTTTCCCATTCATTGAATC+AGG | - | chr3_3:18854626-18854645 | Msa0445110:intron | 30.0% |
| TTTGTGCTGGATAAAACTAA+TGG | - | chr3_3:18854687-18854706 | Msa0445110:intron | 30.0% | |
| GTTTATTATCAGCTCTTCAT+TGG | - | chr3_3:18854750-18854769 | Msa0445110:intron | 30.0% | |
| TGAGTTTGATTCCAAAATTG+TGG | - | chr3_3:18854805-18854824 | Msa0445110:intron | 30.0% | |
| ! | TATACTATCCACCACAATTT+TGG | + | chr3_3:18854819-18854838 | None:intergenic | 30.0% |
| !! | ATTGTGGTGGATAGTATATA+TGG | - | chr3_3:18854821-18854840 | Msa0445110:intron | 30.0% |
| !! | TTTTGAGAAATCTGCATTTG+TGG | + | chr3_3:18855225-18855244 | None:intergenic | 30.0% |
| !! | CTTCTCTATAGTTTGTTGTT+CGG | + | chr3_3:18855270-18855289 | None:intergenic | 30.0% |
| TAATGTCATGGTAGTAGAAA+TGG | + | chr3_3:18855304-18855323 | None:intergenic | 30.0% | |
| ! | TCAATGATTTGTAACATGGT+GGG | + | chr3_3:18855341-18855360 | None:intergenic | 30.0% |
| ! | TGTGTCAATGATTTGTAACA+TGG | + | chr3_3:18855345-18855364 | None:intergenic | 30.0% |
| ! | AATCCATTAGCTACATTTTG+TGG | + | chr3_3:18855368-18855387 | None:intergenic | 30.0% |
| !! | CAAAATGTAGCTAATGGATT+TGG | - | chr3_3:18855368-18855387 | Msa0445110:CDS | 30.0% |
| TTTAATGAAGGGAAATATGC+TGG | - | chr3_3:18855524-18855543 | Msa0445110:CDS | 30.0% | |
| ! | AGACGTTTCTCTATTTTGTT+TGG | + | chr3_3:18855585-18855604 | None:intergenic | 30.0% |
| AATAGAGAAACGTCTATTGT+TGG | - | chr3_3:18855590-18855609 | Msa0445110:CDS | 30.0% | |
| !!! | GGTATTTTTAGATTTGCTAG+AGG | - | chr3_3:18855620-18855639 | Msa0445110:CDS | 30.0% |
| ACTCAACAACATAATGTTCA+GGG | + | chr3_3:18855682-18855701 | None:intergenic | 30.0% | |
| TACTCAACAACATAATGTTC+AGG | + | chr3_3:18855683-18855702 | None:intergenic | 30.0% | |
| ! | GCTCAATTTTTCACTACCAA+TGG | - | chr3_3:18846030-18846049 | Msa0445110:CDS | 35.0% |
| !! | TCAGTGCTTTGTTGATTTGT+TGG | + | chr3_3:18846087-18846106 | None:intergenic | 35.0% |
| ATTAATCTTGCTTTCACCGA+TGG | - | chr3_3:18846327-18846346 | Msa0445110:CDS | 35.0% | |
| AAGAACTTGCAAGAGTTCTA+TGG | + | chr3_3:18846540-18846559 | None:intergenic | 35.0% | |
| TGTTCTCAAAACAAACCACT+AGG | + | chr3_3:18846597-18846616 | None:intergenic | 35.0% | |
| !!! | CCTTTTAGGGTTTTGATTTC+GGG | - | chr3_3:18846626-18846645 | Msa0445110:intron | 35.0% |
| CTTCATTGCTCAAAATGTTG+AGG | + | chr3_3:18846738-18846757 | None:intergenic | 35.0% | |
| !! | TCTTTGGAGCATTGAATAAG+TGG | + | chr3_3:18847518-18847537 | None:intergenic | 35.0% |
| AGAAAGAGTTGAAGACTCAT+TGG | - | chr3_3:18848072-18848091 | Msa0445110:intron | 35.0% | |
| GACACTTGAAAAAAAACGGA+GGG | - | chr3_3:18848377-18848396 | Msa0445110:intron | 35.0% | |
| CTATTGGGTGTCAATCTAAT+TGG | + | chr3_3:18848532-18848551 | None:intergenic | 35.0% | |
| CTATCATAAACAGCAACACA+TGG | - | chr3_3:18848580-18848599 | Msa0445110:intron | 35.0% | |
| AACACATGGACGTTAATGTA+TGG | - | chr3_3:18848594-18848613 | Msa0445110:intron | 35.0% | |
| ! | AAAGAGCTTTTCTTGAACTG+GGG | + | chr3_3:18848639-18848658 | None:intergenic | 35.0% |
| ! | CTAAAGAGCTTTTCTTGAAC+TGG | + | chr3_3:18848641-18848660 | None:intergenic | 35.0% |
| TGTACAATTGCAAGTGTATG+CGG | + | chr3_3:18848665-18848684 | None:intergenic | 35.0% | |
| TGTCAAAAGTCTTCTTGGTA+AGG | + | chr3_3:18848728-18848747 | None:intergenic | 35.0% | |
| ATCAAACACTTGTCGAATCT+CGG | - | chr3_3:18848760-18848779 | Msa0445110:intron | 35.0% | |
| ! | GGTGTTACAAAACACATAAG+TGG | + | chr3_3:18848997-18849016 | None:intergenic | 35.0% |
| GAAGATGCATCTTGTTGATA+TGG | + | chr3_3:18849212-18849231 | None:intergenic | 35.0% | |
| ! | ACAAGATGCATCTTCTTTTC+GGG | - | chr3_3:18849217-18849236 | Msa0445110:intron | 35.0% |
| GAAGATGCATCTTGTTGATA+TGG | + | chr3_3:18849212-18849231 | None:intergenic | 35.0% | |
| ! | ACAAGATGCATCTTCTTTTC+GGG | - | chr3_3:18849217-18849236 | Msa0445110:intron | 35.0% |
| ACCACTAGCTAGTAACTTAA+AGG | - | chr3_3:18849948-18849967 | Msa0445110:intron | 35.0% | |
| ! | TCCTTTAAGTTACTAGCTAG+TGG | + | chr3_3:18849952-18849971 | None:intergenic | 35.0% |
| AGTAACTTAAAGGACCTAAG+TGG | - | chr3_3:18849958-18849977 | Msa0445110:intron | 35.0% | |
| CTTAAATGATAGGATCATGG+AGG | - | chr3_3:18849991-18850010 | Msa0445110:intron | 35.0% | |
| ! | TAGTATTGTTATTGTGCGGT+TGG | - | chr3_3:18850054-18850073 | Msa0445110:intron | 35.0% |
| ! | AAGCATTGTATCCGTTAGAA+AGG | - | chr3_3:18850114-18850133 | Msa0445110:intron | 35.0% |
| TTTCTAAGCTAAAAGAGAGG+AGG | + | chr3_3:18850218-18850237 | None:intergenic | 35.0% | |
| AGGTTTCTAAGCTAAAAGAG+AGG | + | chr3_3:18850221-18850240 | None:intergenic | 35.0% | |
| AGATAATCTTGTCGAAGACA+TGG | - | chr3_3:18850734-18850753 | Msa0445110:intron | 35.0% | |
| ! | TAGACCACTTTATTTCAGAC+AGG | - | chr3_3:18850785-18850804 | Msa0445110:intron | 35.0% |
| CATTACCCTACAAACAAAGT+TGG | + | chr3_3:18850821-18850840 | None:intergenic | 35.0% | |
| ATCTCTGTAAATATGGTCCT+CGG | - | chr3_3:18850997-18851016 | Msa0445110:intron | 35.0% | |
| ! | ACCGGTTAAAATTACCCTTT+TGG | + | chr3_3:18851097-18851116 | None:intergenic | 35.0% |
| ACATGACCCTTTCCAAAAAA+AGG | - | chr3_3:18851266-18851285 | Msa0445110:intron | 35.0% | |
| TACAAGAAATAGAACATGGC+AGG | - | chr3_3:18851324-18851343 | Msa0445110:intron | 35.0% | |
| ACAAGAAATAGAACATGGCA+GGG | - | chr3_3:18851325-18851344 | Msa0445110:intron | 35.0% | |
| ACCTCTTGTGCATAAACTTA+GGG | - | chr3_3:18851360-18851379 | Msa0445110:intron | 35.0% | |
| CACCTTTAATCAATGTGCTT+TGG | - | chr3_3:18851723-18851742 | Msa0445110:intron | 35.0% | |
| ! | GAAATTAAGAGAGTATAGGC+GGG | + | chr3_3:18852000-18852019 | None:intergenic | 35.0% |
| TCAGTCACTAAATCTATGAG+TGG | - | chr3_3:18852196-18852215 | Msa0445110:intron | 35.0% | |
| TATTCAACTTTCTCCTTGTG+TGG | + | chr3_3:18852463-18852482 | None:intergenic | 35.0% | |
| GAACATAGAATTATCATCCG+CGG | + | chr3_3:18852632-18852651 | None:intergenic | 35.0% | |
| ! | TGGGGTTTTACCAACATTTT+TGG | - | chr3_3:18852713-18852732 | Msa0445110:intron | 35.0% |
| ! | GGGGTTTTACCAACATTTTT+GGG | - | chr3_3:18852714-18852733 | Msa0445110:intron | 35.0% |
| CACAAGTATCCCAAAAATGT+TGG | + | chr3_3:18852726-18852745 | None:intergenic | 35.0% | |
| !!! | CAACATTTTTGGGATACTTG+TGG | - | chr3_3:18852724-18852743 | Msa0445110:intron | 35.0% |
| ! | TATATCAAGAAGGGTGCAAA+TGG | - | chr3_3:18852755-18852774 | Msa0445110:intron | 35.0% |
| TGATAGATTTGACATGAGTC+GGG | + | chr3_3:18852798-18852817 | None:intergenic | 35.0% | |
| ATACCTGAGTATCACCTTTA+GGG | + | chr3_3:18852834-18852853 | None:intergenic | 35.0% | |
| TGTGTATGAAATTGTAGCCA+AGG | - | chr3_3:18852891-18852910 | Msa0445110:intron | 35.0% | |
| TATCGAGGATATATCAACCT+GGG | + | chr3_3:18852981-18853000 | None:intergenic | 35.0% | |
| TTATCGAGGATATATCAACC+TGG | + | chr3_3:18852982-18853001 | None:intergenic | 35.0% | |
| TATCCTCGATAATGCAATGA+TGG | - | chr3_3:18852990-18853009 | Msa0445110:intron | 35.0% | |
| GCAAAAGCTAAAGGGAAAAT+TGG | - | chr3_3:18853039-18853058 | Msa0445110:intron | 35.0% | |
| !! | AAATGGGTTTTTCCTCTTGT+TGG | - | chr3_3:18853143-18853162 | Msa0445110:intron | 35.0% |
| !! | AATGGGTTTTTCCTCTTGTT+GGG | - | chr3_3:18853144-18853163 | Msa0445110:intron | 35.0% |
| CAAGTGTTCTAGCAATATGT+TGG | - | chr3_3:18853261-18853280 | Msa0445110:intron | 35.0% | |
| !! | TGTACCTTGTTTAGCTTTCT+TGG | - | chr3_3:18853319-18853338 | Msa0445110:intron | 35.0% |
| ACATCCAAGAAAGCTAAACA+AGG | + | chr3_3:18853326-18853345 | None:intergenic | 35.0% | |
| ! | CTCTAAAGATATGATTCACG+TGG | - | chr3_3:18853376-18853395 | Msa0445110:intron | 35.0% |
| AGATACACAGTTGATCCATA+CGG | + | chr3_3:18853529-18853548 | None:intergenic | 35.0% | |
| ATGGGCTTGATGAGAAATTT+AGG | + | chr3_3:18853556-18853575 | None:intergenic | 35.0% | |
| TAGCTCACAAACAACAACAA+TGG | + | chr3_3:18853670-18853689 | None:intergenic | 35.0% | |
| GTGTGAAAGATGTAATTCTG+CGG | - | chr3_3:18853717-18853736 | Msa0445110:intron | 35.0% | |
| TGTGAAAGATGTAATTCTGC+GGG | - | chr3_3:18853718-18853737 | Msa0445110:intron | 35.0% | |
| TTTGCATTGGAGTATAGGTA+CGG | - | chr3_3:18853742-18853761 | Msa0445110:intron | 35.0% | |
| !! | TAATACTCCACTATTGGCTT+TGG | - | chr3_3:18853949-18853968 | Msa0445110:intron | 35.0% |
| TTAATCACCAAAGCCAATAG+TGG | + | chr3_3:18853959-18853978 | None:intergenic | 35.0% | |
| GTATACCTGGAAATTAGAGA+AGG | - | chr3_3:18853987-18854006 | Msa0445110:intron | 35.0% | |
| ! | GATTACAACCGAACTCTTTT+AGG | + | chr3_3:18854171-18854190 | None:intergenic | 35.0% |
| AGAGTTCGGTTGTAATCAAA+AGG | - | chr3_3:18854174-18854193 | Msa0445110:intron | 35.0% | |
| !!! | CAAAGACTTGTTTTTGTTGC+TGG | + | chr3_3:18854386-18854405 | None:intergenic | 35.0% |
| CAGCAACAAAAACAAGTCTT+TGG | - | chr3_3:18854384-18854403 | Msa0445110:intron | 35.0% | |
| ATGCTTTCAGATACTCCATA+GGG | + | chr3_3:18854415-18854434 | None:intergenic | 35.0% | |
| ! | CTGAAAGCATGGAAATAACA+AGG | - | chr3_3:18854425-18854444 | Msa0445110:intron | 35.0% |
| AGCATGGAAATAACAAGGTT+TGG | - | chr3_3:18854430-18854449 | Msa0445110:intron | 35.0% | |
| ! | AAGGTTCTTTTCTTACTTGC+TGG | - | chr3_3:18854493-18854512 | Msa0445110:intron | 35.0% |
| CATTTATACCTGTTGGAACT+TGG | + | chr3_3:18854591-18854610 | None:intergenic | 35.0% | |
| ATGTGTATTCGAGATGATGA+GGG | - | chr3_3:18854660-18854679 | Msa0445110:intron | 35.0% | |
| GTTTGATTCCAAAATTGTGG+TGG | - | chr3_3:18854808-18854827 | Msa0445110:intron | 35.0% | |
| AGTATATATGGTGGTAAGAG+TGG | - | chr3_3:18854833-18854852 | Msa0445110:intron | 35.0% | |
| ATTTGTGGTTGTTAGTTGAG+TGG | + | chr3_3:18855210-18855229 | None:intergenic | 35.0% | |
| !! | TCTATAGTTTGTTGTTCGGA+GGG | + | chr3_3:18855266-18855285 | None:intergenic | 35.0% |
| TTCTACTACCATGACATTAG+AGG | - | chr3_3:18855305-18855324 | Msa0445110:CDS | 35.0% | |
| ! | TTTTGTTGCCTCTAATGTCA+TGG | + | chr3_3:18855316-18855335 | None:intergenic | 35.0% |
| ! | CAATGATTTGTAACATGGTG+GGG | + | chr3_3:18855340-18855359 | None:intergenic | 35.0% |
| ! | GTCAATGATTTGTAACATGG+TGG | + | chr3_3:18855342-18855361 | None:intergenic | 35.0% |
| ACACCACAAAATGTAGCTAA+TGG | - | chr3_3:18855362-18855381 | Msa0445110:CDS | 35.0% | |
| ATAATGTTCAGGGGTAGAAA+TGG | + | chr3_3:18855672-18855691 | None:intergenic | 35.0% | |
| CTCAACAACATAATGTTCAG+GGG | + | chr3_3:18855681-18855700 | None:intergenic | 35.0% | |
| CCAAACCCAACTGTATTTGA+TGG | + | chr3_3:18846186-18846205 | None:intergenic | 40.0% | |
| CCATCAAATACAGTTGGGTT+TGG | - | chr3_3:18846183-18846202 | Msa0445110:CDS | 40.0% | |
| ! | GTTTGGAGCAAGTTACATGA+TGG | - | chr3_3:18846200-18846219 | Msa0445110:CDS | 40.0% |
| ATGGACAACCTCTTAACTGA+AGG | - | chr3_3:18846219-18846238 | Msa0445110:CDS | 40.0% | |
| GAGCTAACATCAAAACCTGT+CGG | - | chr3_3:18846246-18846265 | Msa0445110:CDS | 40.0% | |
| ATCTTTGCATGATCGTGGAA+TGG | - | chr3_3:18846296-18846315 | Msa0445110:CDS | 40.0% | |
| ACTACCAGCAAAATCACCAT+CGG | + | chr3_3:18846346-18846365 | None:intergenic | 40.0% | |
| GGTAGTACTCTTAGTATGCT+TGG | - | chr3_3:18846360-18846379 | Msa0445110:CDS | 40.0% | |
| GTACTCTTAGTATGCTTGGA+AGG | - | chr3_3:18846364-18846383 | Msa0445110:CDS | 40.0% | |
| AAGGAATCCTGTTCAAGACA+CGG | - | chr3_3:18846383-18846402 | Msa0445110:CDS | 40.0% | |
| GTTAGAGAACTGCCTATTGT+TGG | - | chr3_3:18846405-18846424 | Msa0445110:CDS | 40.0% | |
| !! | ATGCTACTGCTAAGAGTGTT+TGG | - | chr3_3:18846460-18846479 | Msa0445110:CDS | 40.0% |
| !! | TGCTACTGCTAAGAGTGTTT+GGG | - | chr3_3:18846461-18846480 | Msa0445110:CDS | 40.0% |
| GTGTATCTCTTACATCCTAG+TGG | - | chr3_3:18846579-18846598 | Msa0445110:intron | 40.0% | |
| CCCGAAATCAAAACCCTAAA+AGG | + | chr3_3:18846629-18846648 | None:intergenic | 40.0% | |
| TGAAGCAGAAGTAGTTGTCA+TGG | - | chr3_3:18846753-18846772 | Msa0445110:intron | 40.0% | |
| ! | CATTTTCTTCGATTAGGAGG+TGG | - | chr3_3:18846928-18846947 | Msa0445110:intron | 40.0% |
| ! | TTCGATTAGGAGGTGGTTTT+GGG | - | chr3_3:18846935-18846954 | Msa0445110:intron | 40.0% |
| GACACTTAAAAAGGAACGGA+AGG | + | chr3_3:18847686-18847705 | None:intergenic | 40.0% | |
| CGACACTTGAAAAAAAACGG+AGG | - | chr3_3:18848376-18848395 | Msa0445110:intron | 40.0% | |
| TATAAGGCCAAGAGAAAGGT+TGG | - | chr3_3:18848482-18848501 | Msa0445110:intron | 40.0% | |
| ATAAGGCCAAGAGAAAGGTT+GGG | - | chr3_3:18848483-18848502 | Msa0445110:intron | 40.0% | |
| ! | TTCTTGGTAAGGTGTTTAGG+CGG | + | chr3_3:18848717-18848736 | None:intergenic | 40.0% |
| ! | GTCTTCTTGGTAAGGTGTTT+AGG | + | chr3_3:18848720-18848739 | None:intergenic | 40.0% |
| ! | TCGGCTTTGATACCACTATT+AGG | - | chr3_3:18848779-18848798 | Msa0445110:intron | 40.0% |
| ATACCACTATTAGGTCACGA+GGG | - | chr3_3:18848788-18848807 | Msa0445110:intron | 40.0% | |
| TAATGTGCAACTCACTTGTG+CGG | + | chr3_3:18848846-18848865 | None:intergenic | 40.0% | |
| TTAAACTGTTCCCCTTAGGT+CGG | + | chr3_3:18849065-18849084 | None:intergenic | 40.0% | |
| TAGTAGGAACCGAAACACAT+CGG | - | chr3_3:18849108-18849127 | Msa0445110:intron | 40.0% | |
| !! | AAAAGACTCGTGTTGGTTTG+TGG | - | chr3_3:18849354-18849373 | Msa0445110:intron | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+GGG | - | chr3_3:18849355-18849374 | Msa0445110:intron | 40.0% |
| TCGGTTTCTACTATTGTCGT+GGG | + | chr3_3:18849579-18849598 | None:intergenic | 40.0% | |
| TTCGGTTTCTACTATTGTCG+TGG | + | chr3_3:18849580-18849599 | None:intergenic | 40.0% | |
| TAGTAGAAACCGAAACACGT+CGG | - | chr3_3:18849586-18849605 | Msa0445110:intron | 40.0% | |
| !! | AAAAGACTCGTGTTGGTTTG+TGG | - | chr3_3:18849354-18849373 | Msa0445110:intron | 40.0% |
| !! | AAAGACTCGTGTTGGTTTGT+GGG | - | chr3_3:18849355-18849374 | Msa0445110:intron | 40.0% |
| GTGATACTCGATTTAGTACG+CGG | - | chr3_3:18850711-18850730 | Msa0445110:intron | 40.0% | |
| TGTTTGTAGGGTAATGAGCT+TGG | - | chr3_3:18850825-18850844 | Msa0445110:intron | 40.0% | |
| TTCTCTGTAAATGTGGTCCT+CGG | - | chr3_3:18850926-18850945 | Msa0445110:intron | 40.0% | |
| TCTCTGTAAATATGGTCCTC+GGG | - | chr3_3:18850998-18851017 | Msa0445110:intron | 40.0% | |
| TCATGTTAACCAGTGCTCTT+GGG | + | chr3_3:18851252-18851271 | None:intergenic | 40.0% | |
| AATAGAACATGGCAGGGTTA+TGG | - | chr3_3:18851331-18851350 | Msa0445110:intron | 40.0% | |
| GACCTCTTGTGCATAAACTT+AGG | - | chr3_3:18851359-18851378 | Msa0445110:intron | 40.0% | |
| ACCCTAAGTTTATGCACAAG+AGG | + | chr3_3:18851364-18851383 | None:intergenic | 40.0% | |
| TTCCCTGTATAATACGTTCC+TGG | - | chr3_3:18851474-18851493 | Msa0445110:intron | 40.0% | |
| TCCCTGTATAATACGTTCCT+GGG | - | chr3_3:18851475-18851494 | Msa0445110:intron | 40.0% | |
| TCCCAGGAACGTATTATACA+GGG | + | chr3_3:18851479-18851498 | None:intergenic | 40.0% | |
| TTCCCAGGAACGTATTATAC+AGG | + | chr3_3:18851480-18851499 | None:intergenic | 40.0% | |
| CTGAATCGGTCTCTAAATGA+TGG | + | chr3_3:18851819-18851838 | None:intergenic | 40.0% | |
| TTGCGACTACACATAGAAAC+TGG | + | chr3_3:18852091-18852110 | None:intergenic | 40.0% | |
| AGTCGTTAGATCGTTCACAA+AGG | - | chr3_3:18852129-18852148 | Msa0445110:intron | 40.0% | |
| TGAAGCTATTCGTACACATG+TGG | - | chr3_3:18852293-18852312 | Msa0445110:intron | 40.0% | |
| TTTGAATGCCGCTCTTAAGA+TGG | - | chr3_3:18852511-18852530 | Msa0445110:intron | 40.0% | |
| ATTATCATCCGCGGTGATTA+AGG | + | chr3_3:18852623-18852642 | None:intergenic | 40.0% | |
| TATCCCTAAAGGTGATACTC+AGG | - | chr3_3:18852828-18852847 | Msa0445110:intron | 40.0% | |
| GATACCTGAGTATCACCTTT+AGG | + | chr3_3:18852835-18852854 | None:intergenic | 40.0% | |
| TGATACTCAGGTATCCATGA+AGG | - | chr3_3:18852840-18852859 | Msa0445110:intron | 40.0% | |
| AGGTATCCATGAAGGATTAG+CGG | - | chr3_3:18852848-18852867 | Msa0445110:intron | 40.0% | |
| ! | GCTTGCTAATAGACTCAAAC+AGG | - | chr3_3:18852915-18852934 | Msa0445110:intron | 40.0% |
| AATCAATCATCTTTCGTCCC+AGG | - | chr3_3:18852961-18852980 | Msa0445110:intron | 40.0% | |
| AGCTAAAGGGAAAATTGGAG+AGG | - | chr3_3:18853044-18853063 | Msa0445110:intron | 40.0% | |
| TGGAGAGGTTGAACTTAAGT+TGG | - | chr3_3:18853059-18853078 | Msa0445110:intron | 40.0% | |
| !! | TTTCCTCTTGTTGGGTTAGT+TGG | - | chr3_3:18853152-18853171 | Msa0445110:intron | 40.0% |
| ATGTAGCCAGTGTACATCAT+GGG | + | chr3_3:18853574-18853593 | None:intergenic | 40.0% | |
| TATGTAGCCAGTGTACATCA+TGG | + | chr3_3:18853575-18853594 | None:intergenic | 40.0% | |
| ! | GATGTACACTGGCTACATAA+AGG | - | chr3_3:18853576-18853595 | Msa0445110:intron | 40.0% |
| TTGACAATTGCGGCTTCAAT+TGG | + | chr3_3:18853622-18853641 | None:intergenic | 40.0% | |
| ! | TGTTGTTTGTGAGCTACTCT+TGG | - | chr3_3:18853674-18853693 | Msa0445110:intron | 40.0% |
| ! | TAATTCTGCGGGTTTTGCAT+TGG | - | chr3_3:18853729-18853748 | Msa0445110:intron | 40.0% |
| TTGCATTGGAGTATAGGTAC+GGG | - | chr3_3:18853743-18853762 | Msa0445110:intron | 40.0% | |
| ATCGTCCTTCTCTAATTTCC+AGG | + | chr3_3:18853995-18854014 | None:intergenic | 40.0% | |
| CTTTACAACATCGTGTGCTA+AGG | - | chr3_3:18854067-18854086 | Msa0445110:intron | 40.0% | |
| ! | GTAGTAAAAGTGTGCTTCGT+TGG | - | chr3_3:18854268-18854287 | Msa0445110:intron | 40.0% |
| CAGAGACTCCATAATTTGGT+GGG | + | chr3_3:18854297-18854316 | None:intergenic | 40.0% | |
| CATCCAGAGACTCCATAATT+TGG | + | chr3_3:18854301-18854320 | None:intergenic | 40.0% | |
| CAAATTATGGAGTCTCTGGA+TGG | - | chr3_3:18854299-18854318 | Msa0445110:intron | 40.0% | |
| !! | TTTGTCGGAAAACTTGTTGC+AGG | + | chr3_3:18854336-18854355 | None:intergenic | 40.0% |
| CATGCTTTCAGATACTCCAT+AGG | + | chr3_3:18854416-18854435 | None:intergenic | 40.0% | |
| ! | CTATGGAGTATCTGAAAGCA+TGG | - | chr3_3:18854414-18854433 | Msa0445110:intron | 40.0% |
| TCCCATTCATTGAATCAGGT+TGG | - | chr3_3:18854630-18854649 | Msa0445110:intron | 40.0% | |
| CCCAACCTGATTCAATGAAT+GGG | + | chr3_3:18854634-18854653 | None:intergenic | 40.0% | |
| CCCATTCATTGAATCAGGTT+GGG | - | chr3_3:18854631-18854650 | Msa0445110:intron | 40.0% | |
| CATGTGTATTCGAGATGATG+AGG | - | chr3_3:18854659-18854678 | Msa0445110:intron | 40.0% | |
| !! | GTGGTGGATAGTATATATGG+TGG | - | chr3_3:18854824-18854843 | Msa0445110:intron | 40.0% |
| TTGAGTGGAAATGAGTGTGA+GGG | + | chr3_3:18855195-18855214 | None:intergenic | 40.0% | |
| !! | CTCTATAGTTTGTTGTTCGG+AGG | + | chr3_3:18855267-18855286 | None:intergenic | 40.0% |
| ATGGATGATGCAATGACTGA+AGG | - | chr3_3:18855404-18855423 | Msa0445110:CDS | 40.0% | |
| AAACACATTGGAAGAGCTCA+AGG | - | chr3_3:18855443-18855462 | Msa0445110:CDS | 40.0% | |
| AACACATTGGAAGAGCTCAA+GGG | - | chr3_3:18855444-18855463 | Msa0445110:CDS | 40.0% | |
| !! | TGGAAGCACTCTTAGTATGT+TGG | - | chr3_3:18855544-18855563 | Msa0445110:CDS | 40.0% |
| !! | GGAAGCACTCTTAGTATGTT+GGG | - | chr3_3:18855545-18855564 | Msa0445110:CDS | 40.0% |
| AGAGAAACGTCTATTGTTGG+TGG | - | chr3_3:18855593-18855612 | Msa0445110:CDS | 40.0% | |
| TTGTTCGGAGAACACTCCAT+TGG | + | chr3_3:18846049-18846068 | None:intergenic | 45.0% | |
| GCTCTTGTCCTTCAGTTAAG+AGG | + | chr3_3:18846230-18846249 | None:intergenic | 45.0% | |
| AGCTCAAGGGATGTTTGGTT+TGG | - | chr3_3:18846272-18846291 | Msa0445110:CDS | 45.0% | |
| TTGGCATCTTTGCATGATCG+TGG | - | chr3_3:18846291-18846310 | Msa0445110:CDS | 45.0% | |
| ! | TTCACCGATGGTGATTTTGC+TGG | - | chr3_3:18846339-18846358 | Msa0445110:CDS | 45.0% |
| TCTCTAACCGTGTCTTGAAC+AGG | + | chr3_3:18846393-18846412 | None:intergenic | 45.0% | |
| AGAGAACTGCCTATTGTTGG+CGG | - | chr3_3:18846408-18846427 | Msa0445110:CDS | 45.0% | |
| ! | TTGAGTTTGTGTTGGCCACT+AGG | - | chr3_3:18846681-18846700 | Msa0445110:intron | 45.0% |
| ! | CTTCGATTAGGAGGTGGTTT+TGG | - | chr3_3:18846934-18846953 | Msa0445110:intron | 45.0% |
| CGATGAAGATGCGTGATTTC+AGG | + | chr3_3:18846972-18846991 | None:intergenic | 45.0% | |
| ACGTTGATGCGAGGTGAATA+AGG | - | chr3_3:18848096-18848115 | Msa0445110:intron | 45.0% | |
| CAAGAGAAAGGTTGGGCATA+CGG | - | chr3_3:18848490-18848509 | Msa0445110:intron | 45.0% | |
| AAGAGAAAGGTTGGGCATAC+GGG | - | chr3_3:18848491-18848510 | Msa0445110:intron | 45.0% | |
| CTGTTGTCAAAGGCAACAAC+AGG | - | chr3_3:18848686-18848705 | Msa0445110:intron | 45.0% | |
| GATACCACTATTAGGTCACG+AGG | - | chr3_3:18848787-18848806 | Msa0445110:intron | 45.0% | |
| TTTCCCTCGTGACCTAATAG+TGG | + | chr3_3:18848794-18848813 | None:intergenic | 45.0% | |
| AACCTTTCGTATCCACCTAG+CGG | + | chr3_3:18849041-18849060 | None:intergenic | 45.0% | |
| TAAACTGTTCCCCTTAGGTC+GGG | + | chr3_3:18849064-18849083 | None:intergenic | 45.0% | |
| TCGGTTCCTACTATTGTCGT+GGG | + | chr3_3:18849101-18849120 | None:intergenic | 45.0% | |
| TTCGGTTCCTACTATTGTCG+TGG | + | chr3_3:18849102-18849121 | None:intergenic | 45.0% | |
| CCTCTCATTCCGATGTGTTT+CGG | + | chr3_3:18849120-18849139 | None:intergenic | 45.0% | |
| CGAAACACATCGGAATGAGA+GGG | - | chr3_3:18849118-18849137 | Msa0445110:intron | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | + | chr3_3:18849153-18849172 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | - | chr3_3:18849158-18849177 | Msa0445110:intron | 45.0% | |
| !! | TTTTCGGGAGCTCAATCCAT+AGG | - | chr3_3:18849232-18849251 | Msa0445110:intron | 45.0% |
| GCTTAACTGTGGAGTTCCTA+TGG | + | chr3_3:18849251-18849270 | None:intergenic | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | - | chr3_3:18849278-18849297 | Msa0445110:intron | 45.0% | |
| CATGCTGAAAAGACTCGTGT+TGG | - | chr3_3:18849347-18849366 | Msa0445110:intron | 45.0% | |
| !! | AAGACTCGTGTTGGTTTGTG+GGG | - | chr3_3:18849356-18849375 | Msa0445110:intron | 45.0% |
| !! | TGTTGGTTTGTGGGGTTAGT+CGG | - | chr3_3:18849364-18849383 | Msa0445110:intron | 45.0% |
| TAACATCCCAGACTGCTTAC+AGG | + | chr3_3:18849394-18849413 | None:intergenic | 45.0% | |
| AACCTTTCGTATCCACCTAG+CGG | + | chr3_3:18849041-18849060 | None:intergenic | 45.0% | |
| TTAAACCGTTCCCCTTAGGT+CGG | + | chr3_3:18849543-18849562 | None:intergenic | 45.0% | |
| GGTTTCTACTATTGTCGTGG+GGG | + | chr3_3:18849577-18849596 | None:intergenic | 45.0% | |
| CGGTTTCTACTATTGTCGTG+GGG | + | chr3_3:18849578-18849597 | None:intergenic | 45.0% | |
| CATGTAGTCCCATACCTACA+CGG | + | chr3_3:18849153-18849172 | None:intergenic | 45.0% | |
| GTATGGGACTACATGGTTGA+AGG | - | chr3_3:18849158-18849177 | Msa0445110:intron | 45.0% | |
| !! | TTTTCGGGAGCTCAATCCAT+AGG | - | chr3_3:18849232-18849251 | Msa0445110:intron | 45.0% |
| GCTTAACTGTGGAGTTCCTA+TGG | + | chr3_3:18849251-18849270 | None:intergenic | 45.0% | |
| GCTTGGAGTAGTACTAGGAT+GGG | - | chr3_3:18849278-18849297 | Msa0445110:intron | 45.0% | |
| CATGCTGAAAAGACTCGTGT+TGG | - | chr3_3:18849347-18849366 | Msa0445110:intron | 45.0% | |
| !! | AAGACTCGTGTTGGTTTGTG+GGG | - | chr3_3:18849356-18849375 | Msa0445110:intron | 45.0% |
| !! | TGTTGGTTTGTGGGGTTAGT+CGG | - | chr3_3:18849364-18849383 | Msa0445110:intron | 45.0% |
| TAACATCCCAGACTGCTTAC+AGG | + | chr3_3:18849394-18849413 | None:intergenic | 45.0% | |
| TGATAGGATCATGGAGGCTA+AGG | - | chr3_3:18849997-18850016 | Msa0445110:intron | 45.0% | |
| TCTCTGTAAATGTGGTCCTC+GGG | - | chr3_3:18850927-18850946 | Msa0445110:intron | 45.0% | |
| !! | GGTAATTTTAACCGGTGTCC+CGG | - | chr3_3:18851101-18851120 | Msa0445110:intron | 45.0% |
| CATGTTAACCAGTGCTCTTG+GGG | + | chr3_3:18851251-18851270 | None:intergenic | 45.0% | |
| GTCATGTTAACCAGTGCTCT+TGG | + | chr3_3:18851253-18851272 | None:intergenic | 45.0% | |
| ! | GTGCTTTGGATCTCTCTAAG+TGG | - | chr3_3:18851737-18851756 | Msa0445110:intron | 45.0% |
| GTGTACGAATAGCTTCAAGC+TGG | + | chr3_3:18852290-18852309 | None:intergenic | 45.0% | |
| GCTTCAGACCATCTTAAGAG+CGG | + | chr3_3:18852522-18852541 | None:intergenic | 45.0% | |
| AGATTAAATCCACCCGGCAT+GGG | + | chr3_3:18852694-18852713 | None:intergenic | 45.0% | |
| ! | ATGCCGGGTGGATTTAATCT+GGG | - | chr3_3:18852694-18852713 | Msa0445110:intron | 45.0% |
| AACCCCAGATTAAATCCACC+CGG | + | chr3_3:18852700-18852719 | None:intergenic | 45.0% | |
| AGTAGTCCGCTAATCCTTCA+TGG | + | chr3_3:18852857-18852876 | None:intergenic | 45.0% | |
| GAGTCTATTAGCAAGCACCT+TGG | + | chr3_3:18852911-18852930 | None:intergenic | 45.0% | |
| TGGCCATCATTGCATTATCG+AGG | + | chr3_3:18852996-18853015 | None:intergenic | 45.0% | |
| GATCCAACTAACCCAACAAG+AGG | + | chr3_3:18853158-18853177 | None:intergenic | 45.0% | |
| GCTCTACAAGCATCAAGATG+CGG | - | chr3_3:18853420-18853439 | Msa0445110:intron | 45.0% | |
| ATTGTGTGCTGAAGACCGTA+TGG | - | chr3_3:18853511-18853530 | Msa0445110:intron | 45.0% | |
| ATCAAGCCCATGATGTACAC+TGG | - | chr3_3:18853565-18853584 | Msa0445110:intron | 45.0% | |
| GCGGCTTCAATTGGTACATT+AGG | + | chr3_3:18853613-18853632 | None:intergenic | 45.0% | |
| ! | CGGGTTTTGCATTGGAGTAT+AGG | - | chr3_3:18853737-18853756 | Msa0445110:intron | 45.0% |
| GGGAGAACGAATACCAATCT+GGG | - | chr3_3:18853763-18853782 | Msa0445110:intron | 45.0% | |
| CAGCATTACAAAGCCAAGGA+TGG | + | chr3_3:18853790-18853809 | None:intergenic | 45.0% | |
| ATATGTGGCCACTCCAAATG+TGG | + | chr3_3:18853836-18853855 | None:intergenic | 45.0% | |
| ATGGTTACACCCAGAAGCAA+TGG | - | chr3_3:18853872-18853891 | Msa0445110:intron | 45.0% | |
| CTCCATGTTCCATTGCTTCT+GGG | + | chr3_3:18853884-18853903 | None:intergenic | 45.0% | |
| AGGACGATGCTTATACAGCT+AGG | - | chr3_3:18854007-18854026 | Msa0445110:intron | 45.0% | |
| ! | TACAGCTAGGAGTGCATACA+AGG | - | chr3_3:18854020-18854039 | Msa0445110:intron | 45.0% |
| AACATCGTGTGCTAAGGAAC+TGG | - | chr3_3:18854073-18854092 | Msa0445110:intron | 45.0% | |
| ! | GAAGCTTAAGTTGCCACCAA+AGG | - | chr3_3:18854107-18854126 | Msa0445110:intron | 45.0% |
| GTTGGAAGCCCACCAAATTA+TGG | - | chr3_3:18854286-18854305 | Msa0445110:intron | 45.0% | |
| CCAGAGACTCCATAATTTGG+TGG | + | chr3_3:18854298-18854317 | None:intergenic | 45.0% | |
| CCACCAAATTATGGAGTCTC+TGG | - | chr3_3:18854295-18854314 | Msa0445110:intron | 45.0% | |
| ! | AAGTCTTTGGTGTGACCCTA+TGG | - | chr3_3:18854397-18854416 | Msa0445110:intron | 45.0% |
| TGCAAGTCTCCTTGACAAGT+GGG | + | chr3_3:18854558-18854577 | None:intergenic | 45.0% | |
| TTGCAAGTCTCCTTGACAAG+TGG | + | chr3_3:18854559-18854578 | None:intergenic | 45.0% | |
| CTTGTCAAGGAGACTTGCAA+TGG | - | chr3_3:18854559-18854578 | Msa0445110:intron | 45.0% | |
| GGCATAAACCAAGTTCCAAC+AGG | - | chr3_3:18854580-18854599 | Msa0445110:intron | 45.0% | |
| GCCCAACCTGATTCAATGAA+TGG | + | chr3_3:18854635-18854654 | None:intergenic | 45.0% | |
| !! | TCATTGAATCAGGTTGGGCT+TGG | - | chr3_3:18854636-18854655 | Msa0445110:intron | 45.0% |
| !! | TGATGAGGGTCATTTTGTGC+TGG | - | chr3_3:18854674-18854693 | Msa0445110:intron | 45.0% |
| GTTGAGTGGAAATGAGTGTG+AGG | + | chr3_3:18855196-18855215 | None:intergenic | 45.0% | |
| GCACTCTTAGTATGTTGGGA+AGG | - | chr3_3:18855549-18855568 | Msa0445110:CDS | 45.0% | |
| ! | ACGTCTATTGTTGGTGGAAC+TGG | - | chr3_3:18855599-18855618 | Msa0445110:CDS | 45.0% |
| !! | ATACTTTAATAAAAAAATTA+AGG | - | chr3_3:18848865-18848884 | Msa0445110:intron | 5.0% |
| !!! | ATTTTAAAATTTCTTTTTTT+AGG | - | chr3_3:18851211-18851230 | Msa0445110:intron | 5.0% |
| AAACCTGTCGGTAGAGCTCA+AGG | - | chr3_3:18846258-18846277 | Msa0445110:CDS | 50.0% | |
| AACCTGTCGGTAGAGCTCAA+GGG | - | chr3_3:18846259-18846278 | Msa0445110:CDS | 50.0% | |
| GGTAGAGCTCAAGGGATGTT+TGG | - | chr3_3:18846267-18846286 | Msa0445110:CDS | 50.0% | |
| CCTAGCAAACCTAAACACGC+CGG | + | chr3_3:18846436-18846455 | None:intergenic | 50.0% | |
| !! | CGGCGTGTTTAGGTTTGCTA+GGG | - | chr3_3:18846434-18846453 | Msa0445110:CDS | 50.0% |
| !! | GGCGTGTTTAGGTTTGCTAG+GGG | - | chr3_3:18846435-18846454 | Msa0445110:CDS | 50.0% |
| CTCATTGGAACGTTGATGCG+AGG | - | chr3_3:18848087-18848106 | Msa0445110:intron | 50.0% | |
| CGTATGCCCAACCTTTCTCT+TGG | + | chr3_3:18848492-18848511 | None:intergenic | 50.0% | |
| ! | GTTTTGTAACACCCACGTCG+TGG | - | chr3_3:18849004-18849023 | Msa0445110:intron | 50.0% |
| GATATCGAAAGCCACGACGT+GGG | + | chr3_3:18849018-18849037 | None:intergenic | 50.0% | |
| ACCTTTCGTATCCACCTAGC+GGG | + | chr3_3:18849040-18849059 | None:intergenic | 50.0% | |
| TACGAAAGGTTCCCGACCTA+AGG | - | chr3_3:18849050-18849069 | Msa0445110:intron | 50.0% | |
| ACGAAAGGTTCCCGACCTAA+GGG | - | chr3_3:18849051-18849070 | Msa0445110:intron | 50.0% | |
| CGGCTTAAACTGTTCCCCTT+AGG | + | chr3_3:18849069-18849088 | None:intergenic | 50.0% | |
| GGGAACAGTTTAAGCCGCAA+GGG | - | chr3_3:18849072-18849091 | Msa0445110:intron | 50.0% | |
| GGTTCCTACTATTGTCGTGG+GGG | + | chr3_3:18849099-18849118 | None:intergenic | 50.0% | |
| CGGTTCCTACTATTGTCGTG+GGG | + | chr3_3:18849100-18849119 | None:intergenic | 50.0% | |
| CCGAAACACATCGGAATGAG+AGG | - | chr3_3:18849117-18849136 | Msa0445110:intron | 50.0% | |
| ACATCGGAATGAGAGGGATC+CGG | - | chr3_3:18849124-18849143 | Msa0445110:intron | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | - | chr3_3:18849151-18849170 | Msa0445110:intron | 50.0% | |
| GGGACTACATGGTTGAAGGA+AGG | - | chr3_3:18849162-18849181 | Msa0445110:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | - | chr3_3:18849256-18849275 | Msa0445110:intron | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | + | chr3_3:18849262-18849281 | None:intergenic | 50.0% | |
| ACAGTTAAGCGTGCTTGGCT+TGG | - | chr3_3:18849261-18849280 | Msa0445110:intron | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | - | chr3_3:18849273-18849292 | Msa0445110:intron | 50.0% |
| GGCTTGGAGTAGTACTAGGA+TGG | - | chr3_3:18849277-18849296 | Msa0445110:intron | 50.0% | |
| TGACCTACCAGGAAGTTTCC+CGG | - | chr3_3:18849301-18849320 | Msa0445110:intron | 50.0% | |
| TTACCGGGAAACTTCCTGGT+AGG | + | chr3_3:18849307-18849326 | None:intergenic | 50.0% | |
| ATGCTTACCGGGAAACTTCC+TGG | + | chr3_3:18849311-18849330 | None:intergenic | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | + | chr3_3:18849322-18849341 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | + | chr3_3:18849323-18849342 | None:intergenic | 50.0% | |
| GGCAATCCTGTAAGCAGTCT+GGG | - | chr3_3:18849385-18849404 | Msa0445110:intron | 50.0% | |
| ! | GCAGTCTGGGATGTTACACT+TGG | - | chr3_3:18849398-18849417 | Msa0445110:intron | 50.0% |
| GATATCGAAAGCCACGACGT+GGG | + | chr3_3:18849018-18849037 | None:intergenic | 50.0% | |
| ACCTTTCGTATCCACCTAGC+GGG | + | chr3_3:18849040-18849059 | None:intergenic | 50.0% | |
| TACGAAAGGTTCCCGACCTA+AGG | - | chr3_3:18849050-18849069 | Msa0445110:intron | 50.0% | |
| ACGAAAGGTTCCCGACCTAA+GGG | - | chr3_3:18849051-18849070 | Msa0445110:intron | 50.0% | |
| TAAACCGTTCCCCTTAGGTC+GGG | + | chr3_3:18849542-18849561 | None:intergenic | 50.0% | |
| CCTCTCATTCCGACGTGTTT+CGG | + | chr3_3:18849598-18849617 | None:intergenic | 50.0% | |
| CGAAACACGTCGGAATGAGA+GGG | - | chr3_3:18849596-18849615 | Msa0445110:intron | 50.0% | |
| CGTGTAGGTATGGGACTACA+TGG | - | chr3_3:18849151-18849170 | Msa0445110:intron | 50.0% | |
| GGGACTACATGGTTGAAGGA+AGG | - | chr3_3:18849162-18849181 | Msa0445110:intron | 50.0% | |
| ACTCCACAGTTAAGCGTGCT+TGG | - | chr3_3:18849256-18849275 | Msa0445110:intron | 50.0% | |
| AAGCCAAGCACGCTTAACTG+TGG | + | chr3_3:18849262-18849281 | None:intergenic | 50.0% | |
| ACAGTTAAGCGTGCTTGGCT+TGG | - | chr3_3:18849261-18849280 | Msa0445110:intron | 50.0% | |
| !! | GCTTGGCTTGGAGTAGTACT+AGG | - | chr3_3:18849273-18849292 | Msa0445110:intron | 50.0% |
| GGCTTGGAGTAGTACTAGGA+TGG | - | chr3_3:18849277-18849296 | Msa0445110:intron | 50.0% | |
| TACTAGGATGGGTGACCTAC+CGG | - | chr3_3:18849289-18849308 | Msa0445110:intron | 50.0% | |
| ATGCTTACCGGGAAACTTCC+CGG | + | chr3_3:18849311-18849330 | None:intergenic | 50.0% | |
| TCCTCACTCACATGCTTACC+GGG | + | chr3_3:18849322-18849341 | None:intergenic | 50.0% | |
| GTCCTCACTCACATGCTTAC+CGG | + | chr3_3:18849323-18849342 | None:intergenic | 50.0% | |
| GGCAATCCTGTAAGCAGTCT+GGG | - | chr3_3:18849385-18849404 | Msa0445110:intron | 50.0% | |
| ! | TATTTGAGTGATGGCGCACG+AGG | + | chr3_3:18850894-18850913 | None:intergenic | 50.0% |
| !! | AATTTTAACCGGTGTCCCGG+AGG | - | chr3_3:18851104-18851123 | Msa0445110:intron | 50.0% |
| CTTTCTTAACCAGTGCCTCC+GGG | + | chr3_3:18851122-18851141 | None:intergenic | 50.0% | |
| GCTTTCTTAACCAGTGCCTC+CGG | + | chr3_3:18851123-18851142 | None:intergenic | 50.0% | |
| CAGATTAAATCCACCCGGCA+TGG | + | chr3_3:18852695-18852714 | None:intergenic | 50.0% | |
| ! | CATGCCGGGTGGATTTAATC+TGG | - | chr3_3:18852693-18852712 | Msa0445110:intron | 50.0% |
| ! | TGCCGGGTGGATTTAATCTG+GGG | - | chr3_3:18852695-18852714 | Msa0445110:intron | 50.0% |
| CTTGTAGAGCACACGCTTCT+TGG | + | chr3_3:18853410-18853429 | None:intergenic | 50.0% | |
| CGGGAGAACGAATACCAATC+TGG | - | chr3_3:18853762-18853781 | Msa0445110:intron | 50.0% | |
| ! | TACCAATCTGGGACCATCCT+TGG | - | chr3_3:18853774-18853793 | Msa0445110:intron | 50.0% |
| TCCAAATGTGGAGGAGTGGT+CGG | + | chr3_3:18853824-18853843 | None:intergenic | 50.0% | |
| CACCCAGAAGCAATGGAACA+TGG | - | chr3_3:18853879-18853898 | Msa0445110:intron | 50.0% | |
| GCTCCATGTTCCATTGCTTC+TGG | + | chr3_3:18853885-18853904 | None:intergenic | 50.0% | |
| ! | TAACGCATCGTGCACTGATC+AGG | + | chr3_3:18854210-18854229 | None:intergenic | 50.0% |
| ACTAGGCATCCCACTTGTCA+AGG | - | chr3_3:18854546-18854565 | Msa0445110:intron | 50.0% | |
| ACTCCTTGACGTGGACTTGA+GGG | - | chr3_3:18854718-18854737 | Msa0445110:intron | 50.0% | |
| ! | GTGGACTTGAGGGAGGTTTT+AGG | - | chr3_3:18854728-18854747 | Msa0445110:intron | 50.0% |
| TTCATTGGATGCGTGACCTG+CGG | - | chr3_3:18854765-18854784 | Msa0445110:intron | 50.0% | |
| AATCCACAATACCCAACCGC+AGG | + | chr3_3:18854784-18854803 | None:intergenic | 50.0% | |
| ! | AGTCGCTAGTTTCGCTAGAG+TGG | - | chr3_3:18854954-18854973 | Msa0445110:intron | 50.0% |
| GGAAGAGCTCAAGGGATGTT+TGG | - | chr3_3:18855452-18855471 | Msa0445110:CDS | 50.0% | |
| ATCCCTTGAGCTCTACCGAC+AGG | + | chr3_3:18846264-18846283 | None:intergenic | 55.0% | |
| ! | CCGGCGTGTTTAGGTTTGCT+AGG | - | chr3_3:18846433-18846452 | Msa0445110:CDS | 55.0% |
| GGATATCGAAAGCCACGACG+TGG | + | chr3_3:18849019-18849038 | None:intergenic | 55.0% | |
| GTGGCTTTCGATATCCCGCT+AGG | - | chr3_3:18849023-18849042 | Msa0445110:intron | 55.0% | |
| GCTTTCGATATCCCGCTAGG+TGG | - | chr3_3:18849026-18849045 | Msa0445110:intron | 55.0% | |
| TCCCGCTAGGTGGATACGAA+AGG | - | chr3_3:18849036-18849055 | Msa0445110:intron | 55.0% | |
| CGAAAGGTTCCCGACCTAAG+GGG | - | chr3_3:18849052-18849071 | Msa0445110:intron | 55.0% | |
| GGGGAACAGTTTAAGCCGCA+AGG | - | chr3_3:18849071-18849090 | Msa0445110:intron | 55.0% | |
| ACTAGGATGGGTGACCTACC+AGG | - | chr3_3:18849290-18849309 | Msa0445110:intron | 55.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | - | chr3_3:18849318-18849337 | Msa0445110:intron | 55.0% | |
| CGGCAATCCTGTAAGCAGTC+TGG | - | chr3_3:18849384-18849403 | Msa0445110:intron | 55.0% | |
| AGAGCAGACCTCTCCCAGTA+CGG | - | chr3_3:18849425-18849444 | Msa0445110:intron | 55.0% | |
| TCTCCCAGTACGGTGTGGTT+CGG | - | chr3_3:18849435-18849454 | Msa0445110:intron | 55.0% | |
| GGATATCGAAAGCCACGACG+TGG | + | chr3_3:18849019-18849038 | None:intergenic | 55.0% | |
| GTGGCTTTCGATATCCCGCT+AGG | - | chr3_3:18849023-18849042 | Msa0445110:intron | 55.0% | |
| GCTTTCGATATCCCGCTAGG+TGG | - | chr3_3:18849026-18849045 | Msa0445110:intron | 55.0% | |
| TCCCGCTAGGTGGATACGAA+AGG | - | chr3_3:18849036-18849055 | Msa0445110:intron | 55.0% | |
| CGAAAGGTTCCCGACCTAAG+GGG | - | chr3_3:18849052-18849071 | Msa0445110:intron | 55.0% | |
| CGGCTTAAACCGTTCCCCTT+AGG | + | chr3_3:18849547-18849566 | None:intergenic | 55.0% | |
| GGGAACGGTTTAAGCCGCAA+GGG | - | chr3_3:18849550-18849569 | Msa0445110:intron | 55.0% | |
| CCGAAACACGTCGGAATGAG+AGG | - | chr3_3:18849595-18849614 | Msa0445110:intron | 55.0% | |
| ACGTCGGAATGAGAGGGATC+CGG | - | chr3_3:18849602-18849621 | Msa0445110:intron | 55.0% | |
| ACTAGGATGGGTGACCTACC+GGG | - | chr3_3:18849290-18849309 | Msa0445110:intron | 55.0% | |
| TGACCTACCGGGAAGTTTCC+CGG | - | chr3_3:18849779-18849798 | Msa0445110:intron | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | + | chr3_3:18849785-18849804 | None:intergenic | 55.0% | |
| TCCCGGTAAGCATGTGAGTG+AGG | - | chr3_3:18849318-18849337 | Msa0445110:intron | 55.0% | |
| CGGCAATCCTGTAAGCAGTC+TGG | - | chr3_3:18849384-18849403 | Msa0445110:intron | 55.0% | |
| !! | TGCTCTTGGGGCACTGGTTA+AGG | + | chr3_3:18851239-18851258 | None:intergenic | 55.0% |
| GGTTCCTGCCTTAATCACCG+CGG | - | chr3_3:18852612-18852631 | Msa0445110:intron | 55.0% | |
| TCATCCGCGGTGATTAAGGC+AGG | + | chr3_3:18852619-18852638 | None:intergenic | 55.0% | |
| CAAACATGCAGCTCCCATGC+CGG | - | chr3_3:18852678-18852697 | Msa0445110:intron | 55.0% | |
| AAACATGCAGCTCCCATGCC+GGG | - | chr3_3:18852679-18852698 | Msa0445110:intron | 55.0% | |
| AGCCAAGGATGGTCCCAGAT+TGG | + | chr3_3:18853779-18853798 | None:intergenic | 55.0% | |
| CGCGCAGCATTACAAAGCCA+AGG | + | chr3_3:18853794-18853813 | None:intergenic | 55.0% | |
| CCACTCCAAATGTGGAGGAG+TGG | + | chr3_3:18853828-18853847 | None:intergenic | 55.0% | |
| CCACTCCTCCACATTTGGAG+TGG | - | chr3_3:18853825-18853844 | Msa0445110:intron | 55.0% | |
| TGTGGCCACTCCAAATGTGG+AGG | + | chr3_3:18853833-18853852 | None:intergenic | 55.0% | |
| ! | GTTGACTCCACTCCTTGACG+TGG | - | chr3_3:18854709-18854728 | Msa0445110:intron | 55.0% |
| CTCAAGTCCACGTCAAGGAG+TGG | + | chr3_3:18854719-18854738 | None:intergenic | 55.0% | |
| CACTCCTTGACGTGGACTTG+AGG | - | chr3_3:18854717-18854736 | Msa0445110:intron | 55.0% | |
| ! | TGACCTGCGGTTGGGTATTG+TGG | - | chr3_3:18854778-18854797 | Msa0445110:intron | 55.0% |
| CTGCCTATTGTTGGCGGCAC+CGG | - | chr3_3:18846414-18846433 | Msa0445110:CDS | 60.0% | |
| ATTGTCGTGGGGGTCCCTTG+CGG | + | chr3_3:18849089-18849108 | None:intergenic | 60.0% | |
| GGGACCCCCACGACAATAGT+AGG | - | chr3_3:18849092-18849111 | Msa0445110:intron | 60.0% | |
| TCGGAATGAGAGGGATCCGG+AGG | - | chr3_3:18849127-18849146 | Msa0445110:intron | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | - | chr3_3:18849141-18849160 | Msa0445110:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | - | chr3_3:18849142-18849161 | Msa0445110:intron | 60.0% | |
| TCCCATACCTACACGGCCTC+CGG | + | chr3_3:18849146-18849165 | None:intergenic | 60.0% | |
| AGACCTCTCCCAGTACGGTG+TGG | - | chr3_3:18849430-18849449 | Msa0445110:intron | 60.0% | |
| GAACCACACCGTACTGGGAG+AGG | + | chr3_3:18849436-18849455 | None:intergenic | 60.0% | |
| CTCCCAGTACGGTGTGGTTC+GGG | - | chr3_3:18849436-18849455 | Msa0445110:intron | 60.0% | |
| TCCCAGTACGGTGTGGTTCG+GGG | - | chr3_3:18849437-18849456 | Msa0445110:intron | 60.0% | |
| TCCCCGAACCACACCGTACT+GGG | + | chr3_3:18849441-18849460 | None:intergenic | 60.0% | |
| GGCATGTAACACCCACGTCG+TGG | - | chr3_3:18849482-18849501 | Msa0445110:intron | 60.0% | |
| GGTTCCCGACCTAAGGGGAA+CGG | - | chr3_3:18849057-18849076 | Msa0445110:intron | 60.0% | |
| GGGGAACGGTTTAAGCCGCA+AGG | - | chr3_3:18849549-18849568 | Msa0445110:intron | 60.0% | |
| ATTGTCGTGGGGGTCCCTTG+CGG | + | chr3_3:18849089-18849108 | None:intergenic | 60.0% | |
| TCGGAATGAGAGGGATCCGG+AGG | - | chr3_3:18849127-18849146 | Msa0445110:intron | 60.0% | |
| ATCCGGAGGCCGTGTAGGTA+TGG | - | chr3_3:18849141-18849160 | Msa0445110:intron | 60.0% | |
| TCCGGAGGCCGTGTAGGTAT+GGG | - | chr3_3:18849142-18849161 | Msa0445110:intron | 60.0% | |
| TCCCATACCTACACGGCCTC+CGG | + | chr3_3:18849146-18849165 | None:intergenic | 60.0% | |
| ! | AACCAGTGCCCCAAGAGCAC+TGG | - | chr3_3:18851240-18851259 | Msa0445110:intron | 60.0% |
| AACCAGTGCTCTTGGGGCAC+TGG | + | chr3_3:18851245-18851264 | None:intergenic | 60.0% | |
| TTCCATGCGGCAGCCACACA+AGG | - | chr3_3:18852447-18852466 | Msa0445110:intron | 60.0% | |
| GCCGACCACTCCTCCACATT+TGG | - | chr3_3:18853820-18853839 | Msa0445110:intron | 60.0% | |
| CCTCCCTCAAGTCCACGTCA+AGG | + | chr3_3:18854724-18854743 | None:intergenic | 60.0% | |
| CCTTGACGTGGACTTGAGGG+AGG | - | chr3_3:18854721-18854740 | Msa0445110:intron | 60.0% | |
| TTGGATGCGTGACCTGCGGT+TGG | - | chr3_3:18854769-18854788 | Msa0445110:intron | 60.0% | |
| TGGATGCGTGACCTGCGGTT+GGG | - | chr3_3:18854770-18854789 | Msa0445110:intron | 60.0% | |
| !! | ACGCCGGTGCCGCCAACAAT+AGG | + | chr3_3:18846420-18846439 | None:intergenic | 65.0% |
| !! | TTGGCGGCACCGGCGTGTTT+AGG | - | chr3_3:18846424-18846443 | Msa0445110:CDS | 65.0% |
| GTCCCCGAACCACACCGTAC+TGG | + | chr3_3:18849442-18849461 | None:intergenic | 65.0% | |
| ! | GTGTGGTTCGGGGACGAACC+AGG | - | chr3_3:18849447-18849466 | Msa0445110:intron | 65.0% |
| ! | TGGTTCGGGGACGAACCAGG+CGG | - | chr3_3:18849450-18849469 | Msa0445110:intron | 65.0% |
| ACGAACCAGGCGGAAGCTGG+TGG | - | chr3_3:18849460-18849479 | Msa0445110:intron | 65.0% | |
| CGAACCAGGCGGAAGCTGGT+GGG | - | chr3_3:18849461-18849480 | Msa0445110:intron | 65.0% | |
| AACCAGTGCCTCCGGGACAC+CGG | + | chr3_3:18851115-18851134 | None:intergenic | 65.0% | |
| CTCCTTGTGTGGCTGCCGCA+TGG | + | chr3_3:18852452-18852471 | None:intergenic | 65.0% | |
| GAGGGATCCGGAGGCCGTGT+AGG | - | chr3_3:18849136-18849155 | Msa0445110:intron | 70.0% | |
| GGGACGAACCAGGCGGAAGC+TGG | - | chr3_3:18849457-18849476 | Msa0445110:intron | 70.0% | |
| CATGCCCACCAGCTTCCGCC+TGG | + | chr3_3:18849468-18849487 | None:intergenic | 70.0% | |
| GAGGGATCCGGAGGCCGTGT+AGG | - | chr3_3:18849136-18849155 | Msa0445110:intron | 70.0% | |
| ! | AACCGGTGTCCCGGAGGCAC+TGG | - | chr3_3:18851110-18851129 | Msa0445110:intron | 70.0% |
| CATGCAGCTCCCATGCCGGG+TGG | - | chr3_3:18852682-18852701 | Msa0445110:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 18845979 | 18855727 | 18845979 | ID=Msa0445110;Name=Msa0445110 |
| chr3_3 | mRNA | 18845979 | 18855727 | 18845979 | ID=Msa0445110-mRNA-1;Parent=Msa0445110;Name=Msa0445110-mRNA-1;_AED=0.33;_eAED=0.34;_QI=0|0|0|1|0|0.5|2|0|375 |
| chr3_3 | exon | 18855192 | 18855727 | 18855192 | ID=Msa0445110-mRNA-1:exon:4005;Parent=Msa0445110-mRNA-1 |
| chr3_3 | exon | 18845979 | 18846570 | 18845979 | ID=Msa0445110-mRNA-1:exon:4004;Parent=Msa0445110-mRNA-1 |
| chr3_3 | CDS | 18855192 | 18855727 | 18855192 | ID=Msa0445110-mRNA-1:cds;Parent=Msa0445110-mRNA-1 |
| chr3_3 | CDS | 18845979 | 18846570 | 18845979 | ID=Msa0445110-mRNA-1:cds;Parent=Msa0445110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
