Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350620 | XP_039688243.1 | 57.669 | 163 | 57 | 1 | 1 | 151 | 1 | 163 | 3.89e-54 | 186 |
| Msa0350620 | XP_039688243.1 | 97.814 | 183 | 4 | 0 | 151 | 333 | 7 | 189 | 3.37e-126 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350620 | sp|Q9SS03|DIR21_ARATH | 49.689 | 161 | 79 | 2 | 174 | 332 | 29 | 189 | 5.71e-46 | 157 |
| Msa0350620 | sp|Q9SS03|DIR21_ARATH | 38.732 | 142 | 73 | 2 | 30 | 157 | 29 | 170 | 4.72e-29 | 113 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350620 | A0A396INL4 | 57.669 | 163 | 57 | 1 | 1 | 151 | 1 | 163 | 1.86e-54 | 186 |
| Msa0350620 | A0A396INL4 | 97.814 | 183 | 4 | 0 | 151 | 333 | 7 | 189 | 1.61e-126 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062220 | Msa0350620 | 0.811560 | 6.585149e-51 | -8.615850e-47 |
| Msa0220970 | Msa0350620 | -0.827580 | 1.446602e-54 | -8.615850e-47 |
| Msa0334350 | Msa0350620 | 0.812303 | 4.537787e-51 | -8.615850e-47 |
| Msa0345330 | Msa0350620 | 0.843508 | 1.342092e-58 | -8.615850e-47 |
| Msa0345410 | Msa0350620 | 0.849892 | 2.415293e-60 | -8.615850e-47 |
| Msa0350620 | Msa0445110 | 0.871172 | 8.369106e-67 | -8.615850e-47 |
| Msa0350620 | Msa0492550 | 0.869570 | 2.804090e-66 | -8.615850e-47 |
| Msa0350620 | Msa0524890 | -0.809181 | 2.148480e-50 | -8.615850e-47 |
| Msa0350620 | Msa0754680 | 0.812651 | 3.809282e-51 | -8.615850e-47 |
| Msa0350620 | Msa0802470 | -0.803244 | 3.824591e-49 | -8.615850e-47 |
| Msa0350620 | Msa0834860 | 0.814048 | 1.878635e-51 | -8.615850e-47 |
| Msa0350620 | Msa1040120 | 0.810076 | 1.379585e-50 | -8.615850e-47 |
| Msa0350620 | Msa1155560 | 0.802570 | 5.268865e-49 | -8.615850e-47 |
| Msa0350620 | Msa1222970 | 0.815867 | 7.419625e-52 | -8.615850e-47 |
| Msa0350620 | Msa1242230 | 0.806796 | 6.912030e-50 | -8.615850e-47 |
| Msa0350620 | Msa1242240 | 0.819406 | 1.181266e-52 | -8.615850e-47 |
| Msa0350620 | Msa1263660 | 0.803861 | 2.848222e-49 | -8.615850e-47 |
| Msa0350620 | Msa1264020 | 0.804132 | 2.501627e-49 | -8.615850e-47 |
| Msa0350620 | Msa1269820 | 0.907843 | 3.268028e-81 | -8.615850e-47 |
| Msa0350620 | Msa1283840 | 0.811077 | 8.385866e-51 | -8.615850e-47 |
| Msa0350620 | Msa1284260 | 0.821133 | 4.747198e-53 | -8.615850e-47 |
| Msa0350620 | Msa1322860 | 0.822783 | 1.969693e-53 | -8.615850e-47 |
| Msa0350620 | Msa1327050 | 0.825380 | 4.836948e-54 | -8.615850e-47 |
| Msa0350620 | Msa1433890 | -0.837460 | 5.130103e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350620 | MtrunA17_Chr3g0085311 | 97.814 | 183 | 4 | 0 | 151 | 333 | 7 | 189 | 3.10e-130 | 369 |
| Msa0350620 | MtrunA17_Chr3g0085311 | 57.669 | 163 | 57 | 1 | 1 | 151 | 1 | 163 | 3.58e-58 | 186 |
| Msa0350620 | MtrunA17_Chr3g0085291 | 91.803 | 183 | 13 | 1 | 151 | 333 | 7 | 187 | 3.91e-122 | 348 |
| Msa0350620 | MtrunA17_Chr3g0085291 | 57.055 | 163 | 56 | 3 | 1 | 151 | 1 | 161 | 4.93e-56 | 180 |
| Msa0350620 | MtrunA17_Chr3g0085301 | 89.571 | 163 | 5 | 1 | 1 | 151 | 6 | 168 | 1.80e-101 | 296 |
| Msa0350620 | MtrunA17_Chr3g0085301 | 64.171 | 187 | 67 | 0 | 147 | 333 | 8 | 194 | 1.72e-85 | 256 |
| Msa0350620 | MtrunA17_Chr3g0085321 | 63.636 | 187 | 68 | 0 | 147 | 333 | 3 | 189 | 1.68e-85 | 256 |
| Msa0350620 | MtrunA17_Chr3g0085321 | 69.325 | 163 | 38 | 1 | 1 | 151 | 1 | 163 | 2.65e-74 | 227 |
| Msa0350620 | MtrunA17_Chr3g0090231 | 59.459 | 185 | 70 | 1 | 148 | 332 | 5 | 184 | 3.90e-77 | 234 |
| Msa0350620 | MtrunA17_Chr3g0090231 | 62.733 | 161 | 43 | 2 | 3 | 151 | 4 | 159 | 1.70e-66 | 207 |
| Msa0350620 | MtrunA17_Chr4g0040551 | 58.919 | 185 | 71 | 1 | 148 | 332 | 5 | 184 | 7.81e-77 | 233 |
| Msa0350620 | MtrunA17_Chr4g0040551 | 62.733 | 161 | 43 | 2 | 3 | 151 | 4 | 159 | 1.80e-65 | 204 |
| Msa0350620 | MtrunA17_Chr7g0259101 | 36.508 | 378 | 177 | 9 | 13 | 332 | 20 | 392 | 6.89e-64 | 207 |
| Msa0350620 | MtrunA17_Chr1g0177051 | 48.370 | 184 | 88 | 5 | 154 | 332 | 4 | 185 | 5.84e-52 | 170 |
| Msa0350620 | MtrunA17_Chr1g0177051 | 50.735 | 136 | 51 | 4 | 30 | 151 | 27 | 160 | 2.03e-32 | 119 |
| Msa0350620 | MtrunA17_Chr4g0005081 | 50.955 | 157 | 73 | 2 | 178 | 332 | 42 | 196 | 3.88e-46 | 155 |
| Msa0350620 | MtrunA17_Chr4g0005081 | 39.873 | 158 | 72 | 4 | 16 | 151 | 15 | 171 | 5.68e-29 | 110 |
| Msa0350620 | MtrunA17_Chr4g0005071 | 49.045 | 157 | 76 | 2 | 178 | 332 | 41 | 195 | 3.76e-44 | 150 |
| Msa0350620 | MtrunA17_Chr4g0005071 | 44.355 | 124 | 53 | 2 | 43 | 151 | 48 | 170 | 4.59e-27 | 105 |
| Msa0350620 | MtrunA17_Chr4g0005041 | 48.408 | 157 | 77 | 2 | 178 | 332 | 43 | 197 | 3.96e-43 | 147 |
| Msa0350620 | MtrunA17_Chr4g0005041 | 41.463 | 123 | 58 | 2 | 43 | 151 | 50 | 172 | 6.80e-25 | 99.8 |
| Msa0350620 | MtrunA17_Chr1g0175911 | 49.324 | 148 | 71 | 3 | 187 | 332 | 46 | 191 | 9.58e-43 | 146 |
| Msa0350620 | MtrunA17_Chr1g0175911 | 43.089 | 123 | 56 | 2 | 43 | 151 | 46 | 168 | 2.94e-28 | 108 |
| Msa0350620 | MtrunA17_Chr4g0005031 | 46.497 | 157 | 80 | 2 | 178 | 332 | 66 | 220 | 3.03e-41 | 143 |
| Msa0350620 | MtrunA17_Chr4g0005031 | 44.715 | 123 | 54 | 2 | 43 | 151 | 73 | 195 | 2.69e-27 | 106 |
| Msa0350620 | MtrunA17_Chr7g0243501 | 43.548 | 186 | 99 | 3 | 151 | 332 | 8 | 191 | 1.78e-39 | 137 |
| Msa0350620 | MtrunA17_Chr7g0243501 | 37.931 | 145 | 69 | 4 | 24 | 151 | 26 | 166 | 1.14e-25 | 101 |
| Msa0350620 | MtrunA17_Chr7g0259091 | 48.993 | 149 | 73 | 2 | 187 | 332 | 45 | 193 | 2.41e-39 | 137 |
| Msa0350620 | MtrunA17_Chr7g0259091 | 35.152 | 165 | 90 | 3 | 2 | 151 | 6 | 168 | 1.01e-24 | 99.4 |
| Msa0350620 | MtrunA17_Chr7g0259071 | 48.000 | 150 | 73 | 4 | 187 | 332 | 42 | 190 | 3.68e-39 | 137 |
| Msa0350620 | MtrunA17_Chr7g0259071 | 41.270 | 126 | 55 | 4 | 43 | 151 | 42 | 165 | 5.67e-23 | 94.4 |
| Msa0350620 | MtrunA17_Chr4g0037481 | 41.830 | 153 | 84 | 2 | 183 | 332 | 41 | 191 | 4.79e-39 | 137 |
| Msa0350620 | MtrunA17_Chr4g0037481 | 33.871 | 124 | 67 | 2 | 43 | 151 | 43 | 166 | 3.03e-18 | 81.6 |
| Msa0350620 | MtrunA17_Chr4g0005011 | 45.890 | 146 | 75 | 3 | 187 | 330 | 51 | 194 | 8.42e-36 | 128 |
| Msa0350620 | MtrunA17_Chr4g0005011 | 42.276 | 123 | 57 | 2 | 43 | 151 | 51 | 173 | 1.08e-25 | 102 |
| Msa0350620 | MtrunA17_Chr4g0005111 | 38.776 | 147 | 89 | 1 | 187 | 332 | 43 | 189 | 3.97e-34 | 124 |
| Msa0350620 | MtrunA17_Chr4g0005111 | 35.000 | 160 | 90 | 3 | 6 | 151 | 5 | 164 | 7.80e-23 | 94.0 |
| Msa0350620 | MtrunA17_Chr4g0005131 | 40.884 | 181 | 98 | 3 | 155 | 332 | 16 | 190 | 4.44e-34 | 124 |
| Msa0350620 | MtrunA17_Chr4g0005131 | 36.364 | 121 | 62 | 1 | 46 | 151 | 45 | 165 | 3.17e-19 | 84.3 |
| Msa0350620 | MtrunA17_Chr5g0446751 | 38.220 | 191 | 99 | 5 | 151 | 332 | 8 | 188 | 6.64e-32 | 118 |
| Msa0350620 | MtrunA17_Chr5g0446751 | 35.971 | 139 | 69 | 5 | 31 | 151 | 27 | 163 | 8.08e-18 | 80.1 |
| Msa0350620 | MtrunA17_Chr7g0259121 | 44.444 | 153 | 78 | 2 | 187 | 332 | 40 | 192 | 4.40e-31 | 116 |
| Msa0350620 | MtrunA17_Chr7g0259121 | 42.969 | 128 | 54 | 2 | 43 | 151 | 40 | 167 | 4.58e-23 | 95.5 |
| Msa0350620 | MtrunA17_Chr3g0136631 | 40.397 | 151 | 85 | 2 | 187 | 332 | 38 | 188 | 1.57e-29 | 111 |
| Msa0350620 | MtrunA17_Chr3g0136631 | 40.476 | 126 | 58 | 3 | 43 | 151 | 38 | 163 | 9.66e-20 | 85.5 |
| Msa0350620 | MtrunA17_Chr3g0136641 | 40.000 | 150 | 86 | 3 | 187 | 332 | 38 | 187 | 1.96e-28 | 108 |
| Msa0350620 | MtrunA17_Chr3g0136641 | 35.659 | 129 | 59 | 3 | 43 | 151 | 38 | 162 | 7.07e-16 | 74.7 |
| Msa0350620 | MtrunA17_Chr4g0024961 | 31.818 | 154 | 103 | 1 | 182 | 333 | 25 | 178 | 7.83e-20 | 85.5 |
| Msa0350620 | MtrunA17_Chr4g0024961 | 33.083 | 133 | 75 | 2 | 40 | 158 | 27 | 159 | 3.55e-14 | 69.7 |
| Msa0350620 | MtrunA17_Chr4g0024951 | 34.028 | 144 | 93 | 1 | 192 | 333 | 35 | 178 | 1.22e-19 | 85.1 |
| Msa0350620 | MtrunA17_Chr4g0024951 | 43.750 | 80 | 45 | 0 | 79 | 158 | 80 | 159 | 9.75e-15 | 71.6 |
| Msa0350620 | MtrunA17_Chr4g0068381 | 33.793 | 145 | 94 | 1 | 190 | 332 | 35 | 179 | 1.98e-19 | 84.3 |
| Msa0350620 | MtrunA17_Chr4g0068381 | 40.909 | 88 | 48 | 1 | 64 | 151 | 71 | 154 | 2.88e-13 | 67.4 |
| Msa0350620 | MtrunA17_Chr4g0068391 | 31.361 | 169 | 94 | 4 | 148 | 312 | 9 | 159 | 1.99e-18 | 81.6 |
| Msa0350620 | MtrunA17_Chr4g0068391 | 31.319 | 182 | 87 | 6 | 4 | 167 | 9 | 170 | 1.17e-13 | 68.6 |
| Msa0350620 | MtrunA17_Chr4g0005091 | 32.903 | 155 | 88 | 2 | 180 | 332 | 34 | 174 | 3.79e-18 | 80.9 |
| Msa0350620 | MtrunA17_Chr4g0005091 | 29.630 | 162 | 78 | 3 | 8 | 151 | 6 | 149 | 1.07e-11 | 62.8 |
| Msa0350620 | MtrunA17_Chr1g0169281 | 38.298 | 94 | 57 | 1 | 220 | 313 | 141 | 233 | 6.16e-12 | 65.1 |
| Msa0350620 | MtrunA17_Chr1g0169511 | 39.362 | 94 | 56 | 1 | 220 | 313 | 135 | 227 | 1.05e-11 | 64.3 |
| Msa0350620 | MtrunA17_Chr1g0169291 | 39.362 | 94 | 56 | 1 | 220 | 313 | 135 | 227 | 1.59e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0350620 | AT1G65870.1 | 49.689 | 161 | 79 | 2 | 174 | 332 | 29 | 189 | 5.80e-47 | 157 |
| Msa0350620 | AT1G65870.1 | 38.732 | 142 | 73 | 2 | 30 | 157 | 29 | 170 | 4.80e-30 | 113 |
| Msa0350620 | AT5G42500.1 | 45.399 | 163 | 85 | 3 | 172 | 332 | 25 | 185 | 3.23e-42 | 145 |
| Msa0350620 | AT5G42500.1 | 40.000 | 130 | 64 | 2 | 36 | 151 | 33 | 162 | 9.93e-28 | 107 |
| Msa0350620 | AT1G22900.1 | 46.452 | 155 | 79 | 3 | 180 | 332 | 41 | 193 | 4.66e-41 | 142 |
| Msa0350620 | AT1G22900.1 | 39.744 | 156 | 76 | 3 | 10 | 151 | 19 | 170 | 7.05e-31 | 115 |
| Msa0350620 | AT2G21100.1 | 43.243 | 148 | 82 | 1 | 187 | 332 | 40 | 187 | 5.74e-41 | 142 |
| Msa0350620 | AT2G21100.1 | 35.659 | 129 | 67 | 3 | 38 | 151 | 35 | 162 | 4.75e-19 | 84.0 |
| Msa0350620 | AT2G21100.2 | 43.243 | 148 | 82 | 1 | 187 | 332 | 40 | 187 | 5.74e-41 | 142 |
| Msa0350620 | AT2G21100.2 | 35.659 | 129 | 67 | 3 | 38 | 151 | 35 | 162 | 4.75e-19 | 84.0 |
| Msa0350620 | AT5G42510.1 | 44.516 | 155 | 82 | 2 | 180 | 332 | 30 | 182 | 1.46e-39 | 138 |
| Msa0350620 | AT5G42510.1 | 41.538 | 130 | 62 | 2 | 36 | 151 | 30 | 159 | 7.38e-28 | 107 |
| Msa0350620 | AT3G13650.1 | 43.151 | 146 | 82 | 1 | 187 | 332 | 41 | 185 | 3.15e-38 | 134 |
| Msa0350620 | AT3G13650.1 | 36.364 | 121 | 64 | 2 | 43 | 151 | 41 | 160 | 8.92e-22 | 91.3 |
| Msa0350620 | AT1G55210.1 | 45.890 | 146 | 78 | 1 | 187 | 332 | 42 | 186 | 3.15e-37 | 132 |
| Msa0350620 | AT1G55210.1 | 38.843 | 121 | 61 | 2 | 43 | 151 | 42 | 161 | 3.08e-20 | 87.4 |
| Msa0350620 | AT1G55210.2 | 45.890 | 146 | 78 | 1 | 187 | 332 | 42 | 186 | 3.15e-37 | 132 |
| Msa0350620 | AT1G55210.2 | 38.843 | 121 | 61 | 2 | 43 | 151 | 42 | 161 | 3.08e-20 | 87.4 |
| Msa0350620 | AT5G49040.1 | 44.295 | 149 | 79 | 3 | 187 | 332 | 43 | 190 | 2.79e-36 | 130 |
| Msa0350620 | AT5G49040.1 | 37.398 | 123 | 63 | 2 | 43 | 151 | 43 | 165 | 6.55e-21 | 89.4 |
| Msa0350620 | AT1G58170.1 | 43.243 | 148 | 82 | 1 | 187 | 332 | 37 | 184 | 7.40e-36 | 128 |
| Msa0350620 | AT1G58170.1 | 40.650 | 123 | 59 | 2 | 43 | 151 | 37 | 159 | 1.21e-24 | 99.0 |
| Msa0350620 | AT3G13662.1 | 46.825 | 126 | 66 | 1 | 187 | 312 | 40 | 164 | 2.44e-32 | 119 |
| Msa0350620 | AT3G13662.1 | 37.097 | 124 | 59 | 3 | 43 | 151 | 40 | 159 | 2.40e-19 | 84.3 |
| Msa0350620 | AT5G49030.3 | 47.656 | 128 | 65 | 1 | 187 | 312 | 43 | 170 | 3.68e-32 | 127 |
| Msa0350620 | AT5G49030.3 | 37.398 | 123 | 63 | 2 | 43 | 151 | 43 | 165 | 3.06e-19 | 89.4 |
| Msa0350620 | AT4G38700.1 | 41.772 | 158 | 84 | 3 | 183 | 332 | 32 | 189 | 2.66e-30 | 114 |
| Msa0350620 | AT4G38700.1 | 37.594 | 133 | 55 | 4 | 43 | 151 | 36 | 164 | 8.67e-19 | 83.2 |
| Msa0350620 | AT3G58090.1 | 51.402 | 107 | 52 | 0 | 226 | 332 | 165 | 271 | 1.24e-29 | 114 |
| Msa0350620 | AT3G58090.1 | 34.483 | 174 | 95 | 5 | 13 | 179 | 108 | 269 | 3.45e-20 | 89.0 |
| Msa0350620 | AT2G21110.1 | 36.000 | 150 | 90 | 1 | 189 | 332 | 36 | 185 | 3.14e-27 | 105 |
| Msa0350620 | AT2G21110.1 | 32.031 | 128 | 61 | 2 | 45 | 150 | 36 | 159 | 7.82e-15 | 72.4 |
| Msa0350620 | AT3G13660.1 | 41.525 | 118 | 69 | 0 | 215 | 332 | 7 | 124 | 4.67e-26 | 100 |
| Msa0350620 | AT3G13660.1 | 40.845 | 71 | 42 | 0 | 81 | 151 | 29 | 99 | 8.55e-14 | 67.8 |
| Msa0350620 | AT4G11210.1 | 28.492 | 179 | 121 | 4 | 152 | 330 | 8 | 179 | 3.91e-15 | 73.2 |
| Msa0350620 | AT4G23690.1 | 31.034 | 145 | 92 | 4 | 191 | 330 | 42 | 183 | 1.43e-11 | 63.2 |
Find 60 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCTGTTGCTAAGAGTCTT+TGG | 0.249586 | 3_1:+15878153 | Msa0350620:CDS |
| ACTAATTCACCAAGTGGATT+TGG | 0.270766 | 3_1:+15877876 | Msa0350620:CDS |
| TCAGTGCTTTGTTTATTTGT+TGG | 0.319384 | 3_1:-15877771 | None:intergenic |
| TTCTACTACCATGACATTAG+AGG | 0.326685 | 3_1:+15874064 | Msa0350620:CDS |
| CAAAATGTAGCTAATGGATT+TGG | 0.329364 | 3_1:+15874127 | Msa0350620:CDS |
| TCGGCGGCACCGGCGTGTTT+AGG | 0.331194 | 3_1:+15878117 | Msa0350620:CDS |
| TGCTGTTGCTAAGAGTCTTT+GGG | 0.346946 | 3_1:+15878154 | Msa0350620:CDS |
| CTGCCTATTGTCGGCGGCAC+CGG | 0.359439 | 3_1:+15878107 | Msa0350620:CDS |
| ACGTCTATTGTTGGTGGAAC+TGG | 0.364219 | 3_1:+15874358 | Msa0350620:CDS |
| GGTAGAGCTCAAGGGATGTT+TGG | 0.378489 | 3_1:+15877960 | Msa0350620:CDS |
| CTAATTCACCAAGTGGATTT+GGG | 0.379219 | 3_1:+15877877 | Msa0350620:CDS |
| CCACTTGGTGAATTAGTTGA+TGG | 0.386177 | 3_1:-15877870 | None:intergenic |
| TAACATTATGTTGGATTGTT+CGG | 0.388038 | 3_1:-15877748 | None:intergenic |
| TAATGTCATGGTAGTAGAAA+TGG | 0.395728 | 3_1:-15874060 | None:intergenic |
| AGCTCAAGGGATGTTTGGTT+TGG | 0.396536 | 3_1:+15877965 | Msa0350620:CDS |
| ACGCCGGTGCCGCCGACAAT+AGG | 0.397084 | 3_1:-15878110 | None:intergenic |
| GGAAGAGCTCAAGGGATGTT+TGG | 0.401132 | 3_1:+15874211 | Msa0350620:CDS |
| ACACCACAAAATGTAGCTAA+TGG | 0.410009 | 3_1:+15874121 | Msa0350620:CDS |
| GCTCTTGTTCTTCAGTTAAG+AGG | 0.424118 | 3_1:-15877920 | None:intergenic |
| CTTCTCTATAGTTTGTTGTT+CGG | 0.426647 | 3_1:-15874026 | None:intergenic |
| TCTCTAACAGTGTCTTGAAC+AGG | 0.431116 | 3_1:-15878083 | None:intergenic |
| TTTAATGAAGGGAAATATGC+TGG | 0.436425 | 3_1:+15874283 | Msa0350620:CDS |
| GGAAGCACTCTTAGTATGTT+GGG | 0.448120 | 3_1:+15874304 | Msa0350620:CDS |
| ATCCCTTGAGCTCTACCAAC+AGG | 0.451335 | 3_1:-15877954 | None:intergenic |
| CTCTATAGTTTGTTGTTCGG+AGG | 0.455137 | 3_1:-15874023 | None:intergenic |
| ATTTGTTGGTAACATTATGT+TGG | 0.456073 | 3_1:-15877757 | None:intergenic |
| GGTAGTACTCTTAGTATGCT+TGG | 0.469670 | 3_1:+15878053 | Msa0350620:CDS |
| TCTATAATTTGTACAACCGT+TGG | 0.476718 | 3_1:-15877846 | None:intergenic |
| AGAGTGTATGATGATAAATA+TGG | 0.480301 | 3_1:+15874258 | Msa0350620:CDS |
| AATAGAGAAACGTCTATTGT+TGG | 0.491021 | 3_1:+15874349 | Msa0350620:CDS |
| TGGAAGCACTCTTAGTATGT+TGG | 0.496447 | 3_1:+15874303 | Msa0350620:CDS |
| AAACCTGTTGGTAGAGCTCA+AGG | 0.518436 | 3_1:+15877951 | Msa0350620:CDS |
| CAATGATTTGTAACATGGTG+GGG | 0.525613 | 3_1:-15874096 | None:intergenic |
| CTTTACCTTCTAAGATGTCA+TGG | 0.530269 | 3_1:-15877821 | None:intergenic |
| GTTAGAGAACTGCCTATTGT+CGG | 0.533998 | 3_1:+15878098 | Msa0350620:CDS |
| ATCTTTGCATGACCGTGGTA+TGG | 0.534631 | 3_1:+15877989 | Msa0350620:CDS |
| AAACACATTGGAAGAGCTCA+AGG | 0.544060 | 3_1:+15874202 | Msa0350620:CDS |
| ATTTGGGACAACATTCATGA+TGG | 0.545962 | 3_1:+15877893 | Msa0350620:CDS |
| TCTATAGTTTGTTGTTCGGA+GGG | 0.557097 | 3_1:-15874022 | None:intergenic |
| GAGCTAACATCAAAACCTGT+TGG | 0.568987 | 3_1:+15877939 | Msa0350620:CDS |
| TCAATGATTTGTAACATGGT+GGG | 0.580239 | 3_1:-15874097 | None:intergenic |
| AGAGAAACGTCTATTGTTGG+TGG | 0.583087 | 3_1:+15874352 | Msa0350620:CDS |
| GTCAATGATTTGTAACATGG+TGG | 0.600362 | 3_1:-15874098 | None:intergenic |
| TTGTTCGGAGAACAAACCAT+TGG | 0.604047 | 3_1:-15877733 | None:intergenic |
| GCACTCTTAGTATGTTGGGA+AGG | 0.604095 | 3_1:+15874308 | Msa0350620:CDS |
| GAATTAAGTTCAAAACACAT+TGG | 0.623480 | 3_1:+15874190 | Msa0350620:CDS |
| CTTAGAAGGTAAAGATCCAA+CGG | 0.624749 | 3_1:+15877830 | Msa0350620:CDS |
| CCATCAACTAATTCACCAAG+TGG | 0.625731 | 3_1:+15877870 | Msa0350620:CDS |
| GGCGTGTTTAGGTTTGCTAG+AGG | 0.633858 | 3_1:+15878128 | Msa0350620:CDS |
| TTGAGTGGAAATGAGTGTGA+GGG | 0.637117 | 3_1:-15873951 | None:intergenic |
| GTTGAGTGGAAATGAGTGTG+AGG | 0.650989 | 3_1:-15873952 | None:intergenic |
| ATTTGTGGTTGTTAGTTGAG+TGG | 0.655245 | 3_1:-15873966 | None:intergenic |
| AACACATTGGAAGAGCTCAA+GGG | 0.674782 | 3_1:+15874203 | Msa0350620:CDS |
| TTGGCATCTTTGCATGACCG+TGG | 0.675560 | 3_1:+15877984 | Msa0350620:CDS |
| TGTGTCAATGATTTGTAACA+TGG | 0.675813 | 3_1:-15874101 | None:intergenic |
| AGAGAACTGCCTATTGTCGG+CGG | 0.683046 | 3_1:+15878101 | Msa0350620:CDS |
| AACCTGTTGGTAGAGCTCAA+GGG | 0.691584 | 3_1:+15877952 | Msa0350620:CDS |
| AATGTTGTCCCAAATCCACT+TGG | 0.693103 | 3_1:-15877885 | None:intergenic |
| TAATTAACATAACCATACCA+CGG | 0.710660 | 3_1:-15878001 | None:intergenic |
| TCTAGCAAACCTAAACACGC+CGG | 0.712215 | 3_1:-15878126 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATATTATATTATAAATTA+TGG | - | chr3_1:15874987-15875006 | None:intergenic | 0.0% |
| !!! | TCGTAAATTTTTTTTATTTT+CGG | - | chr3_1:15875496-15875515 | None:intergenic | 10.0% |
| !! | AAAATAAAAAAAATTTACGA+GGG | + | chr3_1:15875496-15875515 | Msa0350620:intron | 10.0% |
| !!! | AAAATTTCTGAAAAAAAAAT+GGG | + | chr3_1:15875725-15875744 | Msa0350620:intron | 10.0% |
| !! | AATATATGATAAAATTAAAG+TGG | - | chr3_1:15876136-15876155 | None:intergenic | 10.0% |
| !!! | ATTTTATCATATATTTTTGT+AGG | + | chr3_1:15876141-15876160 | Msa0350620:intron | 10.0% |
| !!! | TGTTTTTATAACAAATTATA+GGG | - | chr3_1:15877056-15877075 | None:intergenic | 10.0% |
| !!! | TTGTTTTTATAACAAATTAT+AGG | - | chr3_1:15877057-15877076 | None:intergenic | 10.0% |
| !!! | ATAAATATGGTTTTTAATGA+AGG | + | chr3_1:15874271-15874290 | Msa0350620:CDS | 15.0% |
| !!! | TAAATATGGTTTTTAATGAA+GGG | + | chr3_1:15874272-15874291 | Msa0350620:CDS | 15.0% |
| !!! | AACTTTTAATAGTAAGAAAA+AGG | + | chr3_1:15875121-15875140 | Msa0350620:intron | 15.0% |
| !! | AAAAAGGACAAAAAAAAAAA+AGG | + | chr3_1:15875137-15875156 | Msa0350620:intron | 15.0% |
| !!! | ATTTTTTAAGTACTTTTTAG+TGG | - | chr3_1:15875287-15875306 | None:intergenic | 15.0% |
| !!! | AAAAAGTACTTAAAAAATGA+AGG | + | chr3_1:15875289-15875308 | Msa0350620:intron | 15.0% |
| !!! | AAAAGTACTTAAAAAATGAA+GGG | + | chr3_1:15875290-15875309 | Msa0350620:intron | 15.0% |
| !!! | ATCAAACCAAAAATTTTATA+GGG | - | chr3_1:15875364-15875383 | None:intergenic | 15.0% |
| !!! | AATCAAACCAAAAATTTTAT+AGG | - | chr3_1:15875365-15875384 | None:intergenic | 15.0% |
| !!! | ACTTTTTTTTTCAAGAATTT+TGG | + | chr3_1:15875441-15875460 | Msa0350620:intron | 15.0% |
| !!! | CTTTTTTTTTCAAGAATTTT+GGG | + | chr3_1:15875442-15875461 | Msa0350620:intron | 15.0% |
| !! | GAAAATAAAAAAAATTTACG+AGG | + | chr3_1:15875495-15875514 | Msa0350620:intron | 15.0% |
| !!! | GAAAATTTCTGAAAAAAAAA+TGG | + | chr3_1:15875724-15875743 | Msa0350620:intron | 15.0% |
| !!! | TATTTAAGTTGATAAAATCT+TGG | + | chr3_1:15875763-15875782 | Msa0350620:intron | 15.0% |
| !!! | TTTTGTCAAAAAAAAAATCT+TGG | + | chr3_1:15876286-15876305 | Msa0350620:intron | 15.0% |
| !! | CAGTAAAGATTTATTTAAAT+AGG | + | chr3_1:15876367-15876386 | Msa0350620:intron | 15.0% |
| !!! | TTTATATGACTATTTTTTGT+CGG | - | chr3_1:15876430-15876449 | None:intergenic | 15.0% |
| !!! | ATGATTATTATCTTTTACTT+TGG | + | chr3_1:15876661-15876680 | Msa0350620:intron | 15.0% |
| !!! | GTTTTTATAACAAATTATAG+GGG | - | chr3_1:15877055-15877074 | None:intergenic | 15.0% |
| !! | AATAAATAAATAAAGAGACT+TGG | - | chr3_1:15877142-15877161 | None:intergenic | 15.0% |
| !!! | TCAAACCAAAAATTTTATAG+GGG | - | chr3_1:15875363-15875382 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATGACCTAAAAA+GGG | - | chr3_1:15875422-15875441 | None:intergenic | 20.0% |
| !!! | TCTTCTTATCATTCATTTTT+GGG | - | chr3_1:15875598-15875617 | None:intergenic | 20.0% |
| !! | TCCAAGTTAATAACATATAA+CGG | - | chr3_1:15876174-15876193 | None:intergenic | 20.0% |
| !!! | TTCATCATTTACATTTTTAG+CGG | + | chr3_1:15876215-15876234 | Msa0350620:intron | 20.0% |
| !!! | CAAGATAACATTCATATTTT+TGG | - | chr3_1:15876577-15876596 | None:intergenic | 20.0% |
| !! | TTATCTTGATATGATTAATG+TGG | + | chr3_1:15876589-15876608 | Msa0350620:intron | 20.0% |
| !! | TATACTTCGTATCATTAAAA+TGG | - | chr3_1:15876642-15876661 | None:intergenic | 20.0% |
| !! | TGAATTTATAACTAGTAGAT+CGG | - | chr3_1:15876970-15876989 | None:intergenic | 20.0% |
| !! | CAATATAAGTAGTTAATAAG+TGG | + | chr3_1:15876992-15877011 | Msa0350620:intron | 20.0% |
| !!! | TAGTTATTTAAGTTAGATGT+AGG | - | chr3_1:15877098-15877117 | None:intergenic | 20.0% |
| !!! | CAATTTTATTTTAGATGGTA+GGG | - | chr3_1:15877261-15877280 | None:intergenic | 20.0% |
| !!! | CAATCCAATTTTATTTTAGA+TGG | - | chr3_1:15877266-15877285 | None:intergenic | 20.0% |
| !!! | ATTTGGTTCAACTTTTATGA+TGG | + | chr3_1:15874144-15874163 | Msa0350620:intron | 25.0% |
| !!! | ATGTGTTTTGAACTTAATTC+TGG | - | chr3_1:15874190-15874209 | None:intergenic | 25.0% |
| ! | GAATTAAGTTCAAAACACAT+TGG | + | chr3_1:15874190-15874209 | Msa0350620:CDS | 25.0% |
| ! | AGAGTGTATGATGATAAATA+TGG | + | chr3_1:15874258-15874277 | Msa0350620:CDS | 25.0% |
| !!! | TCTCTATTTTGTTTGGTAAT+AGG | - | chr3_1:15874337-15874356 | None:intergenic | 25.0% |
| !!! | GTATTTTTAGATTTGCTAGA+GGG | + | chr3_1:15874380-15874399 | Msa0350620:CDS | 25.0% |
| ! | CATATTATTGACAACAAAGA+AGG | + | chr3_1:15874689-15874708 | Msa0350620:intron | 25.0% |
| ! | ATTGAGCTTAATTAGCTAAA+TGG | + | chr3_1:15874882-15874901 | Msa0350620:intron | 25.0% |
| ! | TAATGATTAGTGAACAATGT+TGG | - | chr3_1:15875063-15875082 | None:intergenic | 25.0% |
| ! | AAGGACAAAAAAAAAAAAGG+TGG | + | chr3_1:15875140-15875159 | Msa0350620:intron | 25.0% |
| !!! | AACAACTTGTTAACATCTAA+AGG | + | chr3_1:15875189-15875208 | Msa0350620:intron | 25.0% |
| !!! | ACAACTTGTTAACATCTAAA+GGG | + | chr3_1:15875190-15875209 | Msa0350620:intron | 25.0% |
| !!! | CGGAATTTTTTTTTTTACGA+GGG | - | chr3_1:15875392-15875411 | None:intergenic | 25.0% |
| ! | CCTCGTAAAAAAAAAAATTC+CGG | + | chr3_1:15875390-15875409 | Msa0350620:intron | 25.0% |
| !!! | GTTTTTTGAATGACCTAAAA+AGG | - | chr3_1:15875423-15875442 | None:intergenic | 25.0% |
| !! | GTTTTTGAATGACCTAAAAA+GGG | + | chr3_1:15875464-15875483 | Msa0350620:intron | 25.0% |
| !! | ATCAAACCAAAAATTTTACG+AGG | + | chr3_1:15875524-15875543 | Msa0350620:intron | 25.0% |
| !! | TCAAACCAAAAATTTTACGA+GGG | + | chr3_1:15875525-15875544 | Msa0350620:intron | 25.0% |
| !! | GTCTTCTTATCATTCATTTT+TGG | - | chr3_1:15875599-15875618 | None:intergenic | 25.0% |
| ! | GATAAGAAGACAAAATGAAT+TGG | + | chr3_1:15875608-15875627 | Msa0350620:intron | 25.0% |
| !!! | CCAATTTTATTTTAGATGGT+AGG | - | chr3_1:15877262-15877281 | None:intergenic | 25.0% |
| !! | CCTACCATCTAAAATAAAAT+TGG | + | chr3_1:15877259-15877278 | Msa0350620:intron | 25.0% |
| ! | GATAAGTGGATATAACTTTA+CGG | - | chr3_1:15877641-15877660 | None:intergenic | 25.0% |
| ! | TATATCCACTTATCTTCAAA+TGG | + | chr3_1:15877647-15877666 | Msa0350620:intron | 25.0% |
| ! | TAACATTATGTTGGATTGTT+CGG | - | chr3_1:15877751-15877770 | None:intergenic | 25.0% |
| !!! | ATTTGTTGGTAACATTATGT+TGG | - | chr3_1:15877760-15877779 | None:intergenic | 25.0% |
| ! | TAATTAACATAACCATACCA+CGG | - | chr3_1:15878004-15878023 | None:intergenic | 25.0% |
| !!! | ATTAATCTTGCTTTTACTGA+AGG | + | chr3_1:15878020-15878039 | Msa0350620:CDS | 25.0% |
| !! | TTTTGAGAAATCTGCATTTG+TGG | - | chr3_1:15873984-15874003 | None:intergenic | 30.0% |
| !! | CTTCTCTATAGTTTGTTGTT+CGG | - | chr3_1:15874029-15874048 | None:intergenic | 30.0% |
| TAATGTCATGGTAGTAGAAA+TGG | - | chr3_1:15874063-15874082 | None:intergenic | 30.0% | |
| ! | TCAATGATTTGTAACATGGT+GGG | - | chr3_1:15874100-15874119 | None:intergenic | 30.0% |
| ! | TGTGTCAATGATTTGTAACA+TGG | - | chr3_1:15874104-15874123 | None:intergenic | 30.0% |
| ! | AATCCATTAGCTACATTTTG+TGG | - | chr3_1:15874127-15874146 | None:intergenic | 30.0% |
| !! | CAAAATGTAGCTAATGGATT+TGG | + | chr3_1:15874127-15874146 | Msa0350620:CDS | 30.0% |
| TTTAATGAAGGGAAATATGC+TGG | + | chr3_1:15874283-15874302 | Msa0350620:CDS | 30.0% | |
| ! | AGACGTTTCTCTATTTTGTT+TGG | - | chr3_1:15874344-15874363 | None:intergenic | 30.0% |
| AATAGAGAAACGTCTATTGT+TGG | + | chr3_1:15874349-15874368 | Msa0350620:CDS | 30.0% | |
| !!! | GGTATTTTTAGATTTGCTAG+AGG | + | chr3_1:15874379-15874398 | Msa0350620:CDS | 30.0% |
| ACTCAACAACATAATGTTCA+GGG | - | chr3_1:15874441-15874460 | None:intergenic | 30.0% | |
| TACTCAACAACATAATGTTC+AGG | - | chr3_1:15874442-15874461 | None:intergenic | 30.0% | |
| !!! | TTTTCCAAAAGAGCGTTTTA+GGG | - | chr3_1:15874484-15874503 | None:intergenic | 30.0% |
| !! | TTTTGGAAAAGAGTTAGAGA+TGG | + | chr3_1:15874494-15874513 | Msa0350620:intron | 30.0% |
| TCCATGAATCTATTGATCTA+TGG | - | chr3_1:15874730-15874749 | None:intergenic | 30.0% | |
| ATAGATCAATAGATTCATGG+AGG | + | chr3_1:15874729-15874748 | Msa0350620:intron | 30.0% | |
| TTTAAATAGCTAAACGGCTT+AGG | + | chr3_1:15874846-15874865 | Msa0350620:intron | 30.0% | |
| TTAAATAGCTAAACGGCTTA+GGG | + | chr3_1:15874847-15874866 | Msa0350620:intron | 30.0% | |
| ! | GTTGATGAATATGTGTGATT+GGG | - | chr3_1:15874941-15874960 | None:intergenic | 30.0% |
| !! | AGTTGATGAATATGTGTGAT+TGG | - | chr3_1:15874942-15874961 | None:intergenic | 30.0% |
| GGAAATGACATATATTACAG+GGG | - | chr3_1:15875332-15875351 | None:intergenic | 30.0% | |
| CGGAAATGACATATATTACA+GGG | - | chr3_1:15875333-15875352 | None:intergenic | 30.0% | |
| TCGGAAATGACATATATTAC+AGG | - | chr3_1:15875334-15875353 | None:intergenic | 30.0% | |
| ! | AATTTTATAGGGGCGAAAAT+CGG | - | chr3_1:15875353-15875372 | None:intergenic | 30.0% |
| ! | TTTCGCCCCTATAAAATTTT+TGG | + | chr3_1:15875355-15875374 | Msa0350620:intron | 30.0% |
| !!! | CCGGAATTTTTTTTTTTACG+AGG | - | chr3_1:15875393-15875412 | None:intergenic | 30.0% |
| ! | GGTTTTTGAATGACCTAAAA+AGG | + | chr3_1:15875463-15875482 | Msa0350620:intron | 30.0% |
| !!! | CCTGTAATGTATGTCATTTT+CGG | - | chr3_1:15875557-15875576 | None:intergenic | 30.0% |
| CGAAAATGACATACATTACA+GGG | + | chr3_1:15875555-15875574 | Msa0350620:intron | 30.0% | |
| GAAAATGACATACATTACAG+GGG | + | chr3_1:15875556-15875575 | Msa0350620:intron | 30.0% | |
| ! | ATTTTCTTTCTCCAACAAGT+CGG | + | chr3_1:15875793-15875812 | Msa0350620:intron | 30.0% |
| AACCTAGAGAGAAAATACTA+GGG | - | chr3_1:15875819-15875838 | None:intergenic | 30.0% | |
| AAACCTAGAGAGAAAATACT+AGG | - | chr3_1:15875820-15875839 | None:intergenic | 30.0% | |
| ! | AGCGATTTTCACATAGATAT+AGG | + | chr3_1:15875935-15875954 | Msa0350620:intron | 30.0% |
| GATTGTCCAATCAAACATTT+GGG | + | chr3_1:15876073-15876092 | Msa0350620:intron | 30.0% | |
| GCCGTTATATGTTATTAACT+TGG | + | chr3_1:15876170-15876189 | Msa0350620:intron | 30.0% | |
| !!! | TTTTTTGTCGGAACTATTGT+TGG | - | chr3_1:15876418-15876437 | None:intergenic | 30.0% |
| TGTCTTCATCGTTTATACAA+TGG | - | chr3_1:15876470-15876489 | None:intergenic | 30.0% | |
| CCACGCACTTAAAAAAATTA+TGG | - | chr3_1:15876617-15876636 | None:intergenic | 30.0% | |
| !!! | CCATAATTTTTTTAAGTGCG+TGG | + | chr3_1:15876614-15876633 | Msa0350620:intron | 30.0% |
| GTTAATAAGTGGATATGTTC+TGG | + | chr3_1:15877003-15877022 | Msa0350620:intron | 30.0% | |
| ! | ACAAATTATAGGGGTATGTA+TGG | - | chr3_1:15877046-15877065 | None:intergenic | 30.0% |
| !! | CACAGTTGGCAAATTTTAAT+TGG | - | chr3_1:15877426-15877445 | None:intergenic | 30.0% |
| !!! | AGAATTTTTCAAGACACAGT+TGG | - | chr3_1:15877440-15877459 | None:intergenic | 30.0% |
| !! | GAGGCATTGTAATATAAACA+AGG | - | chr3_1:15877494-15877513 | None:intergenic | 30.0% |
| !! | AACGTTCTCTTTTGTCATTT+TGG | + | chr3_1:15877555-15877574 | Msa0350620:intron | 30.0% |
| !! | TCAGTGCTTTGTTTATTTGT+TGG | - | chr3_1:15877774-15877793 | None:intergenic | 30.0% |
| ! | ATGGTAAAAAAAGTGCAAGT+GGG | - | chr3_1:15877805-15877824 | None:intergenic | 30.0% |
| ! | TTTTACCATGACATCTTAGA+AGG | + | chr3_1:15877816-15877835 | Msa0350620:CDS | 30.0% |
| ! | TCTATAATTTGTACAACCGT+TGG | - | chr3_1:15877849-15877868 | None:intergenic | 30.0% |
| ATTTGTGGTTGTTAGTTGAG+TGG | - | chr3_1:15873969-15873988 | None:intergenic | 35.0% | |
| !! | TCTATAGTTTGTTGTTCGGA+GGG | - | chr3_1:15874025-15874044 | None:intergenic | 35.0% |
| TTCTACTACCATGACATTAG+AGG | + | chr3_1:15874064-15874083 | Msa0350620:CDS | 35.0% | |
| ! | TTTTGTTGCCTCTAATGTCA+TGG | - | chr3_1:15874075-15874094 | None:intergenic | 35.0% |
| ! | CAATGATTTGTAACATGGTG+GGG | - | chr3_1:15874099-15874118 | None:intergenic | 35.0% |
| ! | GTCAATGATTTGTAACATGG+TGG | - | chr3_1:15874101-15874120 | None:intergenic | 35.0% |
| ACACCACAAAATGTAGCTAA+TGG | + | chr3_1:15874121-15874140 | Msa0350620:CDS | 35.0% | |
| ATAATGTTCAGGGGTAGAAA+TGG | - | chr3_1:15874431-15874450 | None:intergenic | 35.0% | |
| CTCAACAACATAATGTTCAG+GGG | - | chr3_1:15874440-15874459 | None:intergenic | 35.0% | |
| !!! | CTTTTCCAAAAGAGCGTTTT+AGG | - | chr3_1:15874485-15874504 | None:intergenic | 35.0% |
| GCCATAGATCAATAGATTCA+TGG | + | chr3_1:15874726-15874745 | Msa0350620:intron | 35.0% | |
| GGGACGTTTAAATAGCTAAA+CGG | + | chr3_1:15874840-15874859 | Msa0350620:intron | 35.0% | |
| AGCTAATTAAGCTCAATGAG+AGG | - | chr3_1:15874879-15874898 | None:intergenic | 35.0% | |
| ATTGGGCTATTCTTTCCAAA+TGG | - | chr3_1:15874924-15874943 | None:intergenic | 35.0% | |
| ! | GCGAACTCACTAAAATTTTC+AGG | - | chr3_1:15875218-15875237 | None:intergenic | 35.0% |
| ! | TTTCGGAAAACACCCTTTTT+AGG | - | chr3_1:15875479-15875498 | None:intergenic | 35.0% |
| ! | TTTCGCCCTCGTAAAATTTT+TGG | - | chr3_1:15875533-15875552 | None:intergenic | 35.0% |
| CCGAAAATGACATACATTAC+AGG | + | chr3_1:15875554-15875573 | Msa0350620:intron | 35.0% | |
| !! | TCTTCTAGTTTCTTCGTTGA+GGG | + | chr3_1:15875842-15875861 | Msa0350620:intron | 35.0% |
| AGATGAAGATGAGTGATTTC+AGG | - | chr3_1:15875891-15875910 | None:intergenic | 35.0% | |
| GTGATTTCATCATCTAAGTG+TGG | + | chr3_1:15875968-15875987 | Msa0350620:intron | 35.0% | |
| !! | TGTTTGATTTCCCGTTTTCT+TGG | + | chr3_1:15876021-15876040 | Msa0350620:intron | 35.0% |
| !! | GTTTGATTTCCCGTTTTCTT+GGG | + | chr3_1:15876022-15876041 | Msa0350620:intron | 35.0% |
| !! | TTTGATTTCCCGTTTTCTTG+GGG | + | chr3_1:15876023-15876042 | Msa0350620:intron | 35.0% |
| AAATGTACACCCCAAGAAAA+CGG | - | chr3_1:15876035-15876054 | None:intergenic | 35.0% | |
| CGATTGTCCAATCAAACATT+TGG | + | chr3_1:15876072-15876091 | Msa0350620:intron | 35.0% | |
| ATCTGGAAGCTTGGATATTT+CGG | + | chr3_1:15876110-15876129 | Msa0350620:intron | 35.0% | |
| TACTAATGTGACGTCAAATG+TGG | + | chr3_1:15876497-15876516 | Msa0350620:intron | 35.0% | |
| ATAAGTGGATATGTTCTGGT+TGG | + | chr3_1:15877007-15877026 | Msa0350620:intron | 35.0% | |
| ! | ATTATAGGGGTATGTATGGT+TGG | - | chr3_1:15877042-15877061 | None:intergenic | 35.0% |
| CAAAGTAACAACGTGTTCAA+TGG | - | chr3_1:15877215-15877234 | None:intergenic | 35.0% | |
| ! | GCTCAATTTTTCACTACCAA+TGG | + | chr3_1:15877717-15877736 | Msa0350620:CDS | 35.0% |
| ! | CATGGTAAAAAAAGTGCAAG+TGG | - | chr3_1:15877806-15877825 | None:intergenic | 35.0% |
| !! | CTTTACCTTCTAAGATGTCA+TGG | - | chr3_1:15877824-15877843 | None:intergenic | 35.0% |
| CTTAGAAGGTAAAGATCCAA+CGG | + | chr3_1:15877830-15877849 | Msa0350620:CDS | 35.0% | |
| ! | ACTAATTCACCAAGTGGATT+TGG | + | chr3_1:15877876-15877895 | Msa0350620:CDS | 35.0% |
| ! | CTAATTCACCAAGTGGATTT+GGG | + | chr3_1:15877877-15877896 | Msa0350620:CDS | 35.0% |
| ! | ATTTGGGACAACATTCATGA+TGG | + | chr3_1:15877893-15877912 | Msa0350620:CDS | 35.0% |
| ! | TTTACTGAAGGTGATTTTGC+TGG | + | chr3_1:15878032-15878051 | Msa0350620:CDS | 35.0% |
| TTGAGTGGAAATGAGTGTGA+GGG | - | chr3_1:15873954-15873973 | None:intergenic | 40.0% | |
| !! | CTCTATAGTTTGTTGTTCGG+AGG | - | chr3_1:15874026-15874045 | None:intergenic | 40.0% |
| ATGGATGATGCAATGACTGA+AGG | + | chr3_1:15874163-15874182 | Msa0350620:intron | 40.0% | |
| AAACACATTGGAAGAGCTCA+AGG | + | chr3_1:15874202-15874221 | Msa0350620:CDS | 40.0% | |
| AACACATTGGAAGAGCTCAA+GGG | + | chr3_1:15874203-15874222 | Msa0350620:CDS | 40.0% | |
| !! | TGGAAGCACTCTTAGTATGT+TGG | + | chr3_1:15874303-15874322 | Msa0350620:CDS | 40.0% |
| !! | GGAAGCACTCTTAGTATGTT+GGG | + | chr3_1:15874304-15874323 | Msa0350620:CDS | 40.0% |
| AGAGAAACGTCTATTGTTGG+TGG | + | chr3_1:15874352-15874371 | Msa0350620:CDS | 40.0% | |
| ! | TCATCCCTAAAACGCTCTTT+TGG | + | chr3_1:15874477-15874496 | Msa0350620:intron | 40.0% |
| !!! | TCTTTTTTGAGTGAGCACTC+TGG | + | chr3_1:15874548-15874567 | Msa0350620:intron | 40.0% |
| !!! | CTTTTTTGAGTGAGCACTCT+GGG | + | chr3_1:15874549-15874568 | Msa0350620:intron | 40.0% |
| TGCAAACCTAAACGGAATGA+GGG | - | chr3_1:15874788-15874807 | None:intergenic | 40.0% | |
| CAGTATGGTGCAAACCTAAA+CGG | - | chr3_1:15874796-15874815 | None:intergenic | 40.0% | |
| GTTAAACACTCTGACCAGTA+TGG | - | chr3_1:15874811-15874830 | None:intergenic | 40.0% | |
| ! | AGAGTGTTTAACCGTCTGAT+GGG | + | chr3_1:15874819-15874838 | Msa0350620:intron | 40.0% |
| ATTTAAACGTCCCCATCAGA+CGG | - | chr3_1:15874833-15874852 | None:intergenic | 40.0% | |
| AAGGTGGAATCTCAAACTTG+AGG | + | chr3_1:15875156-15875175 | Msa0350620:intron | 40.0% | |
| CAAAAGTTCCAAATCACGAC+TGG | + | chr3_1:15875249-15875268 | Msa0350620:intron | 40.0% | |
| ! | TTCCGGAAAACACCCTTTTT+AGG | + | chr3_1:15875407-15875426 | Msa0350620:intron | 40.0% |
| !!! | GACCTAAAAAGGGTGTTTTC+CGG | - | chr3_1:15875474-15875493 | None:intergenic | 40.0% |
| !! | CTCTTCTAGTTTCTTCGTTG+AGG | + | chr3_1:15875841-15875860 | Msa0350620:intron | 40.0% |
| !! | CTTCTAGTTTCTTCGTTGAG+GGG | + | chr3_1:15875843-15875862 | Msa0350620:intron | 40.0% |
| !! | TTCTAGTTTCTTCGTTGAGG+GGG | + | chr3_1:15875844-15875863 | Msa0350620:intron | 40.0% |
| AATGTACACCCCAAGAAAAC+GGG | - | chr3_1:15876034-15876053 | None:intergenic | 40.0% | |
| TTGACGCCCAAATGTTTGAT+TGG | - | chr3_1:15876082-15876101 | None:intergenic | 40.0% | |
| ACAACCTCATTGCAAATGTG+TGG | + | chr3_1:15876888-15876907 | Msa0350620:intron | 40.0% | |
| ! | AGTTTGCTTGTCTGCCAAAA+TGG | + | chr3_1:15877181-15877200 | Msa0350620:intron | 40.0% |
| !! | GAACACGTTGTTACTTTGCT+AGG | + | chr3_1:15877217-15877236 | Msa0350620:intron | 40.0% |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr3_1:15877353-15877372 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr3_1:15877361-15877380 | Msa0350620:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr3_1:15877364-15877383 | Msa0350620:intron | 40.0% | |
| TGTGGCTGAAAAATAGGAAG+TGG | + | chr3_1:15877387-15877406 | Msa0350620:intron | 40.0% | |
| GGTAGCCATTTGAAGATAAG+TGG | - | chr3_1:15877655-15877674 | None:intergenic | 40.0% | |
| TTCAAATGGCTACCTCTCTT+AGG | + | chr3_1:15877661-15877680 | Msa0350620:intron | 40.0% | |
| GAGAAAGAAGAACCTAAGAG+AGG | - | chr3_1:15877676-15877695 | None:intergenic | 40.0% | |
| TTGTTCGGAGAACAAACCAT+TGG | - | chr3_1:15877736-15877755 | None:intergenic | 40.0% | |
| ! | CCACTTGGTGAATTAGTTGA+TGG | - | chr3_1:15877873-15877892 | None:intergenic | 40.0% |
| CCATCAACTAATTCACCAAG+TGG | + | chr3_1:15877870-15877889 | Msa0350620:CDS | 40.0% | |
| AATGTTGTCCCAAATCCACT+TGG | - | chr3_1:15877888-15877907 | None:intergenic | 40.0% | |
| GCTCTTGTTCTTCAGTTAAG+AGG | - | chr3_1:15877923-15877942 | None:intergenic | 40.0% | |
| GAGCTAACATCAAAACCTGT+TGG | + | chr3_1:15877939-15877958 | Msa0350620:CDS | 40.0% | |
| GGTAGTACTCTTAGTATGCT+TGG | + | chr3_1:15878053-15878072 | Msa0350620:CDS | 40.0% | |
| TCTCTAACAGTGTCTTGAAC+AGG | - | chr3_1:15878086-15878105 | None:intergenic | 40.0% | |
| GTTAGAGAACTGCCTATTGT+CGG | + | chr3_1:15878098-15878117 | Msa0350620:CDS | 40.0% | |
| ATGCTGTTGCTAAGAGTCTT+TGG | + | chr3_1:15878153-15878172 | Msa0350620:CDS | 40.0% | |
| TGCTGTTGCTAAGAGTCTTT+GGG | + | chr3_1:15878154-15878173 | Msa0350620:CDS | 40.0% | |
| GTTGAGTGGAAATGAGTGTG+AGG | - | chr3_1:15873955-15873974 | None:intergenic | 45.0% | |
| GCACTCTTAGTATGTTGGGA+AGG | + | chr3_1:15874308-15874327 | Msa0350620:CDS | 45.0% | |
| ! | ACGTCTATTGTTGGTGGAAC+TGG | + | chr3_1:15874358-15874377 | Msa0350620:CDS | 45.0% |
| TGACTACCCTCATTCCGTTT+AGG | + | chr3_1:15874779-15874798 | Msa0350620:intron | 45.0% | |
| GTGCAAACCTAAACGGAATG+AGG | - | chr3_1:15874789-15874808 | None:intergenic | 45.0% | |
| ! | CGTTTAGGTTTGCACCATAC+TGG | + | chr3_1:15874794-15874813 | Msa0350620:intron | 45.0% |
| ! | CAGAGTGTTTAACCGTCTGA+TGG | + | chr3_1:15874818-15874837 | Msa0350620:intron | 45.0% |
| GAGTGTTTAACCGTCTGATG+GGG | + | chr3_1:15874820-15874839 | Msa0350620:intron | 45.0% | |
| CTTTCCAAATGGACCGTGAT+GGG | - | chr3_1:15874913-15874932 | None:intergenic | 45.0% | |
| TCTTTCCAAATGGACCGTGA+TGG | - | chr3_1:15874914-15874933 | None:intergenic | 45.0% | |
| TATCCTAGCCAGTCGTGATT+TGG | - | chr3_1:15875260-15875279 | None:intergenic | 45.0% | |
| !! | AAATACTAGGGCCGACTTGT+TGG | - | chr3_1:15875807-15875826 | None:intergenic | 45.0% |
| ! | GGCCCTAGTATTTTCTCTCT+AGG | + | chr3_1:15875814-15875833 | Msa0350620:intron | 45.0% |
| ! | TTGTTGTTCGTCGTCTTGTG+CGG | + | chr3_1:15875995-15876014 | Msa0350620:intron | 45.0% |
| GTGATGATCTACTAGGGAGT+TGG | + | chr3_1:15876763-15876782 | Msa0350620:intron | 45.0% | |
| GGATTTCCTGCTGTTACAAC+AGG | + | chr3_1:15876784-15876803 | Msa0350620:intron | 45.0% | |
| TCTCAGCCACACATTACGAT+CGG | - | chr3_1:15876833-15876852 | None:intergenic | 45.0% | |
| ATCGTAATGTGTGGCTGAGA+TGG | + | chr3_1:15876833-15876852 | Msa0350620:intron | 45.0% | |
| TCAGCCACACATTTGCAATG+AGG | - | chr3_1:15876895-15876914 | None:intergenic | 45.0% | |
| !! | CAATGGTTGACCTGCCATTT+TGG | - | chr3_1:15877198-15877217 | None:intergenic | 45.0% |
| ! | AGGAGGTGTGGCTGAAAAAT+AGG | + | chr3_1:15877381-15877400 | Msa0350620:intron | 45.0% |
| ! | AAACCTGTTGGTAGAGCTCA+AGG | + | chr3_1:15877951-15877970 | Msa0350620:CDS | 45.0% |
| ! | AACCTGTTGGTAGAGCTCAA+GGG | + | chr3_1:15877952-15877971 | Msa0350620:CDS | 45.0% |
| AGCTCAAGGGATGTTTGGTT+TGG | + | chr3_1:15877965-15877984 | Msa0350620:CDS | 45.0% | |
| ATCTTTGCATGACCGTGGTA+TGG | + | chr3_1:15877989-15878008 | Msa0350620:CDS | 45.0% | |
| TCTAGCAAACCTAAACACGC+CGG | - | chr3_1:15878129-15878148 | None:intergenic | 45.0% | |
| !! | ATTATTTAATTAATCAATTA+TGG | - | chr3_1:15875036-15875055 | None:intergenic | 5.0% |
| GGAAGAGCTCAAGGGATGTT+TGG | + | chr3_1:15874211-15874230 | Msa0350620:CDS | 50.0% | |
| CGACAGTCAACGAGTATGAG+AGG | + | chr3_1:15874753-15874772 | Msa0350620:intron | 50.0% | |
| CTAAATGGTCCAGCCCATCA+CGG | + | chr3_1:15874897-15874916 | Msa0350620:intron | 50.0% | |
| ! | GTTCCAAATCACGACTGGCT+AGG | + | chr3_1:15875254-15875273 | Msa0350620:intron | 50.0% |
| TAGTTTCTTCGTTGAGGGGG+TGG | + | chr3_1:15875847-15875866 | Msa0350620:intron | 50.0% | |
| ! | TTCGTTGAGGGGGTGGTTTT+GGG | + | chr3_1:15875854-15875873 | Msa0350620:intron | 50.0% |
| ACGTTGCAGATCTGGAAGCT+TGG | + | chr3_1:15876101-15876120 | Msa0350620:intron | 50.0% | |
| AGCACGGGTGATGATCTACT+AGG | + | chr3_1:15876756-15876775 | Msa0350620:intron | 50.0% | |
| GCACGGGTGATGATCTACTA+GGG | + | chr3_1:15876757-15876776 | Msa0350620:intron | 50.0% | |
| AGCCACACATTACGATCGGA+CGG | - | chr3_1:15876829-15876848 | None:intergenic | 50.0% | |
| TGCTTGTCTGCCAAAATGGC+AGG | + | chr3_1:15877185-15877204 | Msa0350620:intron | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr3_1:15877369-15877388 | Msa0350620:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr3_1:15877374-15877393 | None:intergenic | 50.0% | |
| ATCCCTTGAGCTCTACCAAC+AGG | - | chr3_1:15877957-15877976 | None:intergenic | 50.0% | |
| GGTAGAGCTCAAGGGATGTT+TGG | + | chr3_1:15877960-15877979 | Msa0350620:CDS | 50.0% | |
| TTGGCATCTTTGCATGACCG+TGG | + | chr3_1:15877984-15878003 | Msa0350620:CDS | 50.0% | |
| AGAGAACTGCCTATTGTCGG+CGG | + | chr3_1:15878101-15878120 | Msa0350620:CDS | 50.0% | |
| !! | GGCGTGTTTAGGTTTGCTAG+AGG | + | chr3_1:15878128-15878147 | Msa0350620:CDS | 50.0% |
| ! | CTTCGTTGAGGGGGTGGTTT+TGG | + | chr3_1:15875853-15875872 | Msa0350620:intron | 55.0% |
| ATCATCACCCGTGCTCAGCA+CGG | - | chr3_1:15876751-15876770 | None:intergenic | 55.0% | |
| CAGCGTCCTGTTGTAACAGC+AGG | - | chr3_1:15876793-15876812 | None:intergenic | 55.0% | |
| GACCGTCCGATCGTAATGTG+TGG | + | chr3_1:15876824-15876843 | Msa0350620:intron | 55.0% | |
| !! | CCAAATGGACCGTGATGGGC+TGG | - | chr3_1:15874909-15874928 | None:intergenic | 60.0% |
| CCAGCCCATCACGGTCCATT+TGG | + | chr3_1:15874906-15874925 | Msa0350620:intron | 60.0% | |
| GGGCGTCAACGTTGCAGATC+TGG | + | chr3_1:15876093-15876112 | Msa0350620:intron | 60.0% | |
| CAGTAGACCCGTGCTGAGCA+CGG | + | chr3_1:15876740-15876759 | Msa0350620:intron | 60.0% | |
| AGTAGACCCGTGCTGAGCAC+GGG | + | chr3_1:15876741-15876760 | Msa0350620:intron | 60.0% | |
| TCATCACCCGTGCTCAGCAC+GGG | - | chr3_1:15876750-15876769 | None:intergenic | 60.0% | |
| ATCCACGATCTTCGCGAGCG+AGG | - | chr3_1:15877513-15877532 | None:intergenic | 60.0% | |
| TGCCTCGCTCGCGAAGATCG+TGG | + | chr3_1:15877508-15877527 | Msa0350620:intron | 65.0% | |
| CTGCCTATTGTCGGCGGCAC+CGG | + | chr3_1:15878107-15878126 | Msa0350620:CDS | 65.0% | |
| !! | ACGCCGGTGCCGCCGACAAT+AGG | - | chr3_1:15878113-15878132 | None:intergenic | 70.0% |
| !! | TCGGCGGCACCGGCGTGTTT+AGG | + | chr3_1:15878117-15878136 | Msa0350620:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 15873917 | 15878235 | 15873917 | ID=Msa0350620;Name=Msa0350620 |
| chr3_1 | mRNA | 15873917 | 15878235 | 15873917 | ID=Msa0350620-mRNA-1;Parent=Msa0350620;Name=Msa0350620-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0|0|3|0|333 |
| chr3_1 | exon | 15873917 | 15874148 | 15873917 | ID=Msa0350620-mRNA-1:exon:3846;Parent=Msa0350620-mRNA-1 |
| chr3_1 | exon | 15874185 | 15874401 | 15874185 | ID=Msa0350620-mRNA-1:exon:3847;Parent=Msa0350620-mRNA-1 |
| chr3_1 | exon | 15877683 | 15878235 | 15877683 | ID=Msa0350620-mRNA-1:exon:3848;Parent=Msa0350620-mRNA-1 |
| chr3_1 | CDS | 15873917 | 15874148 | 15873917 | ID=Msa0350620-mRNA-1:cds;Parent=Msa0350620-mRNA-1 |
| chr3_1 | CDS | 15874185 | 15874401 | 15874185 | ID=Msa0350620-mRNA-1:cds;Parent=Msa0350620-mRNA-1 |
| chr3_1 | CDS | 15877683 | 15878235 | 15877683 | ID=Msa0350620-mRNA-1:cds;Parent=Msa0350620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
