Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447930 | XP_003599380.1 | 99.111 | 225 | 2 | 0 | 16 | 240 | 116 | 340 | 1.05e-165 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447930 | sp|Q9LM02|SMT1_ARATH | 87.727 | 220 | 27 | 0 | 16 | 235 | 116 | 335 | 7.30e-147 | 416 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447930 | B7FHU0 | 99.111 | 225 | 2 | 0 | 16 | 240 | 116 | 340 | 5.02e-166 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0094940 | Msa0447930 | 0.818957 | 1.494603e-52 | -8.615850e-47 |
| Msa0226620 | Msa0447930 | 0.820056 | 8.389206e-53 | -8.615850e-47 |
| Msa0401150 | Msa0447930 | 0.850923 | 1.240244e-60 | -8.615850e-47 |
| Msa0260270 | Msa0447930 | 0.802419 | 5.662135e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447930 | MtrunA17_Chr3g0089671 | 99.111 | 225 | 2 | 0 | 16 | 240 | 116 | 340 | 9.67e-170 | 471 |
| Msa0447930 | MtrunA17_Chr3g0143441 | 42.795 | 229 | 115 | 3 | 15 | 240 | 144 | 359 | 5.24e-58 | 187 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0447930 | AT5G13710.1 | 87.727 | 220 | 27 | 0 | 16 | 235 | 116 | 335 | 7.42e-148 | 416 |
| Msa0447930 | AT5G13710.2 | 87.727 | 220 | 27 | 0 | 16 | 235 | 116 | 335 | 7.42e-148 | 416 |
| Msa0447930 | AT1G20330.1 | 43.805 | 226 | 111 | 3 | 15 | 237 | 144 | 356 | 3.21e-59 | 191 |
| Msa0447930 | AT1G76090.1 | 42.105 | 228 | 116 | 3 | 15 | 239 | 144 | 358 | 1.44e-56 | 184 |
Find 73 sgRNAs with CRISPR-Local
Find 300 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTCAATATGTTAAAAT+TGG | 0.172129 | 3_3:-26812661 | Msa0447930:three_prime_UTR |
| CAGAAGCAATACCATATTTC+TGG | 0.200578 | 3_3:+26813948 | None:intergenic |
| TTTAAGTTGCTTGATTGTTT+AGG | 0.289919 | 3_3:-26812817 | Msa0447930:three_prime_UTR |
| TGCAGCTTGACATCTGTTAC+AGG | 0.292704 | 3_3:-26816711 | Msa0447930:intron |
| TCACGAGTTACTGTGATTCT+AGG | 0.294374 | 3_3:-26812888 | Msa0447930:three_prime_UTR |
| AAAAGAATTATAACTGTGTT+TGG | 0.322232 | 3_3:-26812864 | Msa0447930:three_prime_UTR |
| CAGGCACTCAATCGCAAAAC+TGG | 0.331030 | 3_3:-26816324 | Msa0447930:CDS |
| TAATGAATTTATCAATTTAA+CGG | 0.348839 | 3_3:+26812633 | None:intergenic |
| CAATGTGCTTCCTGCATTAG+TGG | 0.366041 | 3_3:-26812758 | Msa0447930:three_prime_UTR |
| GTTCAGTTGCTTTCTGAAGC+AGG | 0.378507 | 3_3:+26812936 | None:intergenic |
| ACTGAACAAGTGGAACAAAT+AGG | 0.389893 | 3_3:-26812920 | Msa0447930:exon |
| ATACCTTTCCCCTGGTGATC+TGG | 0.394747 | 3_3:+26816670 | None:intergenic |
| GTGAAGGCTCTGGAGTTTGT+TGG | 0.407221 | 3_3:-26813646 | Msa0447930:CDS |
| TAGAGCTTCAAGACACTTTG+TGG | 0.411789 | 3_3:+26814525 | None:intergenic |
| AATATTTCACATACAGCATC+TGG | 0.437219 | 3_3:+26815137 | None:intergenic |
| ACTTAAAACAGTAAGACTTA+TGG | 0.442121 | 3_3:+26812833 | None:intergenic |
| CACTTCCTTGCTTTACAACT+CGG | 0.447218 | 3_3:-26817362 | Msa0447930:CDS |
| TGAACCCTTTGACTCCCCTT+CGG | 0.449592 | 3_3:+26813616 | None:intergenic |
| AAAGATGAAAACCTTCTGTC+CGG | 0.459180 | 3_3:+26817331 | None:intergenic |
| CATCGGACTCTCCTCTTCCT+TGG | 0.478580 | 3_3:-26814041 | Msa0447930:CDS |
| TCTACCGATGCAGATGGGTA+GGG | 0.478854 | 3_3:-26817418 | None:intergenic |
| TCAATATGTTAAAATTGGAC+CGG | 0.481799 | 3_3:-26812656 | Msa0447930:three_prime_UTR |
| ATACCATATTTCTGGTGAAA+AGG | 0.482576 | 3_3:+26813956 | None:intergenic |
| CTGCAGGCAGAAATTGAGAT+TGG | 0.490804 | 3_3:-26814574 | Msa0447930:intron |
| GAAAAGTGACTCTTGTCTAA+AGG | 0.498676 | 3_3:+26814012 | None:intergenic |
| GAATTTATCAATTTAACGGC+CGG | 0.501044 | 3_3:+26812637 | None:intergenic |
| TCTAAAGCAAGCAGGCTTTG+AGG | 0.501314 | 3_3:-26814506 | Msa0447930:intron |
| GCTGCAGAGGGTCTAGTTGA+AGG | 0.505379 | 3_3:-26813577 | Msa0447930:CDS |
| ACATTTGTAGGTGAAGGCTC+TGG | 0.507945 | 3_3:-26813656 | Msa0447930:intron |
| GTTTGTTGGACTTGCTCCGA+AGG | 0.508709 | 3_3:-26813632 | Msa0447930:CDS |
| TTGCTCCGAAGGGGAGTCAA+AGG | 0.509030 | 3_3:-26813621 | Msa0447930:CDS |
| TTTGTATGTGAAGGTCATAT+GGG | 0.514447 | 3_3:-26814076 | Msa0447930:intron |
| AGCTTCCGTCTAACGGCTGT+TGG | 0.514924 | 3_3:-26813982 | Msa0447930:CDS |
| AAAGGCAAGTACCAAGGAAG+AGG | 0.518855 | 3_3:+26814030 | None:intergenic |
| TACAGCATCTGGTGCATGGC+AGG | 0.521675 | 3_3:+26815148 | None:intergenic |
| ATTTATAGAGTGTTAAAGCC+TGG | 0.522060 | 3_3:-26814752 | Msa0447930:CDS |
| TAAGCAGCAAAACATTGGCC+AGG | 0.524306 | 3_3:+26814734 | None:intergenic |
| ACTTAGCAGCTTCCGTCTAA+CGG | 0.524703 | 3_3:-26813989 | Msa0447930:CDS |
| TTACAACTCGGTCTTAAGCC+CGG | 0.529865 | 3_3:-26817350 | Msa0447930:CDS |
| GCAGAAATTGAGATTGGTGA+TGG | 0.534551 | 3_3:-26814568 | Msa0447930:CDS |
| CTACCGATGCAGATGGGTAG+GGG | 0.535056 | 3_3:-26817417 | None:intergenic |
| GGTTCAAGATTTCCTTGAGA+AGG | 0.535966 | 3_3:-26813599 | Msa0447930:CDS |
| GACCCTCTGCAGCCTTCTCA+AGG | 0.541641 | 3_3:+26813587 | None:intergenic |
| TTTGTGGTCAATCTAATGTC+AGG | 0.541951 | 3_3:+26814541 | None:intergenic |
| ACTACACTATCCACTAATGC+AGG | 0.542258 | 3_3:+26812748 | None:intergenic |
| TCAGAAAGCAACTGAACAAG+TGG | 0.543394 | 3_3:-26812930 | Msa0447930:exon |
| GGCGTCCAACAGCCGTTAGA+CGG | 0.545051 | 3_3:+26813977 | None:intergenic |
| CGGTCTTAAGCCCGGACAGA+AGG | 0.545139 | 3_3:-26817342 | Msa0447930:intron |
| TTCCTTGAGAAGGCTGCAGA+GGG | 0.556231 | 3_3:-26813589 | Msa0447930:CDS |
| AAGATGAAAACCTTCTGTCC+GGG | 0.556269 | 3_3:+26817332 | None:intergenic |
| TTCTACCGATGCAGATGGGT+AGG | 0.559636 | 3_3:-26817419 | None:intergenic |
| ATTCATAAGCAGCAAAACAT+TGG | 0.559750 | 3_3:+26814729 | None:intergenic |
| ATAATGAGTACCAGATCACC+AGG | 0.560207 | 3_3:-26816680 | Msa0447930:CDS |
| TTTGTTGGACTTGCTCCGAA+GGG | 0.560389 | 3_3:-26813631 | Msa0447930:CDS |
| CTTGAAGCTCTAAAGCAAGC+AGG | 0.564705 | 3_3:-26814514 | Msa0447930:CDS |
| TAAAACAGTAAGACTTATGG+TGG | 0.571230 | 3_3:+26812836 | None:intergenic |
| CACATACAGCATCTGGTGCA+TGG | 0.575106 | 3_3:+26815144 | None:intergenic |
| TCAAAACTATTGTCTTCGAA+TGG | 0.577172 | 3_3:+26815194 | None:intergenic |
| CAGAAATTGAGATTGGTGAT+GGG | 0.583752 | 3_3:-26814567 | Msa0447930:CDS |
| TTTCCTTGAGAAGGCTGCAG+AGG | 0.588645 | 3_3:-26813590 | Msa0447930:CDS |
| TGCTCCGAAGGGGAGTCAAA+GGG | 0.593371 | 3_3:-26813620 | Msa0447930:CDS |
| GTACCAGATCACCAGGGGAA+AGG | 0.600780 | 3_3:-26816673 | Msa0447930:intron |
| CAAAACACATACCTTTCCCC+TGG | 0.613010 | 3_3:+26816662 | None:intergenic |
| AGCATCTGGTGCATGGCAGG+TGG | 0.619604 | 3_3:+26815151 | None:intergenic |
| TTGTTGGACTTGCTCCGAAG+GGG | 0.623793 | 3_3:-26813630 | Msa0447930:CDS |
| TAAGACCGAGTTGTAAAGCA+AGG | 0.628506 | 3_3:+26817357 | None:intergenic |
| GCAGAGGGTCTAGTTGAAGG+TGG | 0.639355 | 3_3:-26813574 | Msa0447930:CDS |
| ATGGGAGAAAGATCTAGCAT+CGG | 0.642273 | 3_3:-26814058 | Msa0447930:CDS |
| TTGTCTAAAGGCAAGTACCA+AGG | 0.651918 | 3_3:+26814024 | None:intergenic |
| CAAGACTTGCAACTTCGTCA+AGG | 0.656952 | 3_3:-26816295 | Msa0447930:intron |
| ACTCAATCGCAAAACTGGAG+TGG | 0.680106 | 3_3:-26816319 | Msa0447930:CDS |
| AATGAGTACCAGATCACCAG+GGG | 0.700086 | 3_3:-26816678 | Msa0447930:CDS |
| TAATGAGTACCAGATCACCA+GGG | 0.727702 | 3_3:-26816679 | Msa0447930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCTTTATTTGTTTTT+AGG | - | chr3_3:26812773-26812792 | Msa0447930:three_prime_UTR | 10.0% |
| !!! | ATCATTATTGTTTTATTATT+AGG | + | chr3_3:26814729-26814748 | None:intergenic | 10.0% |
| !!! | GTATTATATGTTTATTTTTT+TGG | - | chr3_3:26815558-26815577 | Msa0447930:intron | 10.0% |
| !!! | GATATTATTTTAGAATATTT+TGG | + | chr3_3:26815826-26815845 | None:intergenic | 10.0% |
| !!! | TATCTTTATTTAACATATTT+TGG | - | chr3_3:26816684-26816703 | Msa0447930:CDS | 10.0% |
| !!! | TTTAAAATTAATAATGAAGT+AGG | + | chr3_3:26816815-26816834 | None:intergenic | 10.0% |
| !! | TTTATTCAATATGTTAAAAT+TGG | - | chr3_3:26817343-26817362 | Msa0447930:CDS | 10.0% |
| !! | TAATGAATTTATCAATTTAA+CGG | + | chr3_3:26817374-26817393 | None:intergenic | 10.0% |
| !!! | AGAAATCATTGATTTATAAA+AGG | + | chr3_3:26813739-26813758 | None:intergenic | 15.0% |
| !!! | ATCAATGATTTCTATTTTTT+AGG | - | chr3_3:26813746-26813765 | Msa0447930:intron | 15.0% |
| !!! | GAGAACAATTTTAAAAATAT+TGG | + | chr3_3:26813805-26813824 | None:intergenic | 15.0% |
| !! | CAAAATAATTGACAATATAT+GGG | + | chr3_3:26814961-26814980 | None:intergenic | 15.0% |
| !! | ACAAAATAATTGACAATATA+TGG | + | chr3_3:26814962-26814981 | None:intergenic | 15.0% |
| !! | AGATTATTCACTATTTATTT+AGG | + | chr3_3:26815723-26815742 | None:intergenic | 15.0% |
| !! | AATAAATAGTGAATAATCTA+TGG | - | chr3_3:26815724-26815743 | Msa0447930:intron | 15.0% |
| !! | ATTGCTAATAAATTAATCTA+TGG | - | chr3_3:26816595-26816614 | Msa0447930:intron | 15.0% |
| !!! | GATTTTCATCTAATAATTTT+CGG | + | chr3_3:26816657-26816676 | None:intergenic | 15.0% |
| !! | TAAATTATAAATTAAGATCG+AGG | - | chr3_3:26816724-26816743 | Msa0447930:intron | 15.0% |
| !! | AAATTATAAATTAAGATCGA+GGG | - | chr3_3:26816725-26816744 | Msa0447930:intron | 15.0% |
| !!! | TTTTCATAAGCTAAAAAATA+AGG | + | chr3_3:26816872-26816891 | None:intergenic | 15.0% |
| !!! | CTTTATTTGTTTTTAGGTTT+TGG | - | chr3_3:26812779-26812798 | Msa0447930:three_prime_UTR | 20.0% |
| !! | TTGTAATAAATAGAATATCG+CGG | + | chr3_3:26812956-26812975 | None:intergenic | 20.0% |
| !! | TTGCTTACAAAAATCATTAA+GGG | - | chr3_3:26813263-26813282 | Msa0447930:intron | 20.0% |
| !!! | TATTTTATTTAGACGTTGTT+TGG | - | chr3_3:26813851-26813870 | Msa0447930:intron | 20.0% |
| !! | ATTAAGAATCATAATTGACA+TGG | - | chr3_3:26814747-26814766 | Msa0447930:CDS | 20.0% |
| !!! | TTTTTGTATTATGCATAGTA+TGG | - | chr3_3:26815216-26815235 | Msa0447930:intron | 20.0% |
| !!! | AAGGTATAGAAAGAATTTTT+AGG | - | chr3_3:26815361-26815380 | Msa0447930:intron | 20.0% |
| !!! | TAATCAAATTTGTTGGAAAT+AGG | - | chr3_3:26816204-26816223 | Msa0447930:intron | 20.0% |
| !!! | AATCAAATTTGTTGGAAATA+GGG | - | chr3_3:26816205-26816224 | Msa0447930:intron | 20.0% |
| !! | TGTTATGAATTTACATTTGT+AGG | - | chr3_3:26816336-26816355 | Msa0447930:intron | 20.0% |
| !!! | ATAGTTTTTCAACTTAAATG+AGG | - | chr3_3:26816489-26816508 | Msa0447930:intron | 20.0% |
| !!! | ATGAATAAGGCAATTTTTTT+AGG | - | chr3_3:26816539-26816558 | Msa0447930:intron | 20.0% |
| !! | AATTATAAATTAAGATCGAG+GGG | - | chr3_3:26816726-26816745 | Msa0447930:intron | 20.0% |
| !! | AAATTATGTTACAAGAGTTA+AGG | - | chr3_3:26816833-26816852 | Msa0447930:intron | 20.0% |
| !! | AATTCTAAATTGATTAACAC+TGG | - | chr3_3:26816944-26816963 | Msa0447930:intron | 20.0% |
| !! | AAAAGAATTATAACTGTGTT+TGG | - | chr3_3:26817140-26817159 | Msa0447930:intron | 20.0% |
| ! | AATCGAGAAATTTCTCTTAA+TGG | + | chr3_3:26812828-26812847 | None:intergenic | 25.0% |
| ! | ACAAAAATACTGTCAAATAG+CGG | - | chr3_3:26812972-26812991 | Msa0447930:CDS | 25.0% |
| ! | AACTAAAGGTAAAACAAACA+AGG | + | chr3_3:26813245-26813264 | None:intergenic | 25.0% |
| !! | TGATTTTTGTAAGCAACTAA+AGG | + | chr3_3:26813259-26813278 | None:intergenic | 25.0% |
| ! | GTTGCTTACAAAAATCATTA+AGG | - | chr3_3:26813262-26813281 | Msa0447930:intron | 25.0% |
| ! | TTCAAAAACTAGATATGAGA+AGG | + | chr3_3:26813398-26813417 | None:intergenic | 25.0% |
| !!! | TCTAGTTTTTGAAGCTTTAT+AGG | - | chr3_3:26813405-26813424 | Msa0447930:intron | 25.0% |
| ! | TCATGGTTGTGTAATAAAAA+TGG | + | chr3_3:26813459-26813478 | None:intergenic | 25.0% |
| ! | AAGGCTAAATTTATTCTAGA+GGG | + | chr3_3:26813551-26813570 | None:intergenic | 25.0% |
| ! | TAAGGCTAAATTTATTCTAG+AGG | + | chr3_3:26813552-26813571 | None:intergenic | 25.0% |
| !! | TAATAGTCTTTTCATCGATA+AGG | + | chr3_3:26813570-26813589 | None:intergenic | 25.0% |
| ! | CTAAAATACTTTGATCTAAC+TGG | - | chr3_3:26813639-26813658 | Msa0447930:CDS | 25.0% |
| !!! | GCCAATTTTTTATGTTTAAC+AGG | - | chr3_3:26813661-26813680 | Msa0447930:intron | 25.0% |
| ! | GCCTGTTAAACATAAAAAAT+TGG | + | chr3_3:26813665-26813684 | None:intergenic | 25.0% |
| !!! | TGATTTCTATTTTTTAGGAG+TGG | - | chr3_3:26813751-26813770 | Msa0447930:intron | 25.0% |
| !!! | GATTTCTATTTTTTAGGAGT+GGG | - | chr3_3:26813752-26813771 | Msa0447930:intron | 25.0% |
| ! | AACGTCTAAATAAAATATCC+AGG | + | chr3_3:26813848-26813867 | None:intergenic | 25.0% |
| ! | CACAAAAAATGAGAAGAATA+CGG | + | chr3_3:26814098-26814117 | None:intergenic | 25.0% |
| !!! | GAAACTTTTAGGAAACTTAA+AGG | - | chr3_3:26814140-26814159 | Msa0447930:intron | 25.0% |
| ! | ATAACACATTATATTCACCT+TGG | - | chr3_3:26814202-26814221 | Msa0447930:intron | 25.0% |
| ! | TAACACATTATATTCACCTT+GGG | - | chr3_3:26814203-26814222 | Msa0447930:intron | 25.0% |
| ! | TTGAAAAAGGGGTAAAAATT+AGG | - | chr3_3:26814305-26814324 | Msa0447930:intron | 25.0% |
| ! | TGAAAAAGGGGTAAAAATTA+GGG | - | chr3_3:26814306-26814325 | Msa0447930:intron | 25.0% |
| !!! | TAAAAATTAGGGTTTGCTTT+TGG | - | chr3_3:26814317-26814336 | Msa0447930:intron | 25.0% |
| !!! | TTAATCTTATTTGATAACGC+AGG | - | chr3_3:26814770-26814789 | Msa0447930:CDS | 25.0% |
| ! | TAGTATGGAAAAAAGAAGTA+GGG | + | chr3_3:26814916-26814935 | None:intergenic | 25.0% |
| ! | ATAGTATGGAAAAAAGAAGT+AGG | + | chr3_3:26814917-26814936 | None:intergenic | 25.0% |
| ! | GTATATAGAAAGCTATAGTA+TGG | + | chr3_3:26814931-26814950 | None:intergenic | 25.0% |
| !!! | CATATCATACCTTGATTTTT+TGG | + | chr3_3:26815341-26815360 | None:intergenic | 25.0% |
| ! | AAAATCAAGGTATGATATGA+AGG | - | chr3_3:26815342-26815361 | Msa0447930:intron | 25.0% |
| !!! | TATTTTTTTGGTTGAAGTTG+TGG | - | chr3_3:26815570-26815589 | Msa0447930:intron | 25.0% |
| !!! | ATTTTTTTGGTTGAAGTTGT+GGG | - | chr3_3:26815571-26815590 | Msa0447930:intron | 25.0% |
| ! | AACACTAATCCCTATTTATA+GGG | - | chr3_3:26815682-26815701 | Msa0447930:intron | 25.0% |
| ! | TCTATGTTTCCCTATAAATA+GGG | + | chr3_3:26815694-26815713 | None:intergenic | 25.0% |
| !! | TCTTTTCTTTTTGTATGTGA+AGG | - | chr3_3:26815919-26815938 | Msa0447930:intron | 25.0% |
| ! | TTCTGTAATACTTTGTTACT+TGG | - | chr3_3:26816141-26816160 | Msa0447930:intron | 25.0% |
| ! | CAAACGATAATCAAATTTGT+TGG | - | chr3_3:26816197-26816216 | Msa0447930:intron | 25.0% |
| ! | ATGTACAATTCTCATGAATA+AGG | - | chr3_3:26816526-26816545 | Msa0447930:intron | 25.0% |
| !!! | TTTTTTTAGGTCTCTACTTT+TGG | - | chr3_3:26816552-26816571 | Msa0447930:intron | 25.0% |
| ! | ATTTATTAGCAATTCACTCA+AGG | + | chr3_3:26816588-26816607 | None:intergenic | 25.0% |
| ! | AAAAAATAAGGCAATCCAAA+CGG | + | chr3_3:26816860-26816879 | None:intergenic | 25.0% |
| ! | TGTGTTTAGCTAATGATTTA+AGG | + | chr3_3:26816919-26816938 | None:intergenic | 25.0% |
| ! | ACTTAAAACAGTAAGACTTA+TGG | + | chr3_3:26817174-26817193 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGCTTGATTGTTT+AGG | - | chr3_3:26817187-26817206 | Msa0447930:intron | 25.0% |
| !! | CCAGCTTTTATAGTTAAAAA+AGG | + | chr3_3:26817290-26817309 | None:intergenic | 25.0% |
| !!! | CCTTTTTTAACTATAAAAGC+TGG | - | chr3_3:26817287-26817306 | Msa0447930:intron | 25.0% |
| !! | GATTCAACTTTTGAATAACT+TGG | + | chr3_3:26817313-26817332 | None:intergenic | 25.0% |
| ! | TCAATATGTTAAAATTGGAC+CGG | - | chr3_3:26817348-26817367 | Msa0447930:CDS | 25.0% |
| !!! | TGTTTTTAGGTTTTGGATGT+TGG | - | chr3_3:26812786-26812805 | Msa0447930:three_prime_UTR | 30.0% |
| TAAGAGAAATTTCTCGATTC+AGG | - | chr3_3:26812829-26812848 | Msa0447930:three_prime_UTR | 30.0% | |
| ATACTTATATGACAATCCTC+TGG | - | chr3_3:26813504-26813523 | Msa0447930:intron | 30.0% | |
| GTGTATAAAATTTATGCCAG+AGG | + | chr3_3:26813523-26813542 | None:intergenic | 30.0% | |
| ! | CTTTGCATTGTGAGATTTTA+AGG | + | chr3_3:26813942-26813961 | None:intergenic | 30.0% |
| !! | AGTTTGTAAGTCTGGAATTT+TGG | - | chr3_3:26813960-26813979 | Msa0447930:CDS | 30.0% |
| ! | TTCCTAAAAGTTTCCACTTT+TGG | + | chr3_3:26814134-26814153 | None:intergenic | 30.0% |
| TTTAGGAAACTTAAAGGCTA+AGG | - | chr3_3:26814146-26814165 | Msa0447930:intron | 30.0% | |
| TTAGGAAACTTAAAGGCTAA+GGG | - | chr3_3:26814147-26814166 | Msa0447930:intron | 30.0% | |
| TTTCTCTCTTGATTTCTCTT+AGG | - | chr3_3:26814258-26814277 | Msa0447930:intron | 30.0% | |
| TTGTAAAGACTCATTCATAG+TGG | - | chr3_3:26814371-26814390 | Msa0447930:intron | 30.0% | |
| ACTCTCTTATCTTTGTTCTT+TGG | - | chr3_3:26814474-26814493 | Msa0447930:intron | 30.0% | |
| !! | TTTGTTCTTTGGTTTGATTG+TGG | - | chr3_3:26814485-26814504 | Msa0447930:intron | 30.0% |
| ! | TGTGGTTTTTCTATACACAT+AGG | - | chr3_3:26814503-26814522 | Msa0447930:intron | 30.0% |
| AAATGTGGAGCAAATAACAA+TGG | + | chr3_3:26814585-26814604 | None:intergenic | 30.0% | |
| AACAAACAAGGTCAAAAATG+TGG | + | chr3_3:26814600-26814619 | None:intergenic | 30.0% | |
| !!! | ACCTTGTTTGTTTTGACAAA+GGG | - | chr3_3:26814608-26814627 | Msa0447930:intron | 30.0% |
| TCAAAACTATTGTCTTCGAA+TGG | + | chr3_3:26814813-26814832 | None:intergenic | 30.0% | |
| AATATTTCACATACAGCATC+TGG | + | chr3_3:26814870-26814889 | None:intergenic | 30.0% | |
| ! | TTGTATCAAGACTGTGATTT+TGG | - | chr3_3:26814978-26814997 | Msa0447930:intron | 30.0% |
| GACCGCAATATTAAATATTG+CGG | - | chr3_3:26815126-26815145 | Msa0447930:intron | 30.0% | |
| CACCGCAATATTTAATATTG+CGG | + | chr3_3:26815131-26815150 | None:intergenic | 30.0% | |
| ! | TGCATCCACTATTTAAAATC+TGG | - | chr3_3:26815155-26815174 | Msa0447930:CDS | 30.0% |
| ! | GCATCCACTATTTAAAATCT+GGG | - | chr3_3:26815156-26815175 | Msa0447930:CDS | 30.0% |
| ! | TATGCCCAGATTTTAAATAG+TGG | + | chr3_3:26815163-26815182 | None:intergenic | 30.0% |
| GGCATAACTAAACATTTATC+TGG | - | chr3_3:26815177-26815196 | Msa0447930:CDS | 30.0% | |
| ! | ATTTATAGAGTGTTAAAGCC+TGG | - | chr3_3:26815252-26815271 | Msa0447930:intron | 30.0% |
| ATTCATAAGCAGCAAAACAT+TGG | + | chr3_3:26815278-26815297 | None:intergenic | 30.0% | |
| !! | AATGTTTTGCTGCTTATGAA+TGG | - | chr3_3:26815277-26815296 | Msa0447930:intron | 30.0% |
| !!! | TTTTGGTGTTCTTGGTTATT+GGG | + | chr3_3:26815324-26815343 | None:intergenic | 30.0% |
| !!! | TTTTTGGTGTTCTTGGTTAT+TGG | + | chr3_3:26815325-26815344 | None:intergenic | 30.0% |
| GAACACTAATCCCTATTTAT+AGG | - | chr3_3:26815681-26815700 | Msa0447930:intron | 30.0% | |
| GTCTATGTTTCCCTATAAAT+AGG | + | chr3_3:26815695-26815714 | None:intergenic | 30.0% | |
| !!! | ATATTTTGGTTTATCCCCTA+GGG | + | chr3_3:26815812-26815831 | None:intergenic | 30.0% |
| !!! | AATATTTTGGTTTATCCCCT+AGG | + | chr3_3:26815813-26815832 | None:intergenic | 30.0% |
| ATTTAAGAGATCATCCTCAT+TGG | - | chr3_3:26815883-26815902 | Msa0447930:intron | 30.0% | |
| ! | TTTTGTATGTGAAGGTCATA+TGG | - | chr3_3:26815927-26815946 | Msa0447930:intron | 30.0% |
| TTTGTATGTGAAGGTCATAT+GGG | - | chr3_3:26815928-26815947 | Msa0447930:intron | 30.0% | |
| !! | ATACCATATTTCTGGTGAAA+AGG | + | chr3_3:26816051-26816070 | None:intergenic | 30.0% |
| !!! | GCATTCTTGTTTTTGCATTT+TGG | - | chr3_3:26816246-26816265 | Msa0447930:intron | 30.0% |
| GAATTTACATTTGTAGGTGA+AGG | - | chr3_3:26816342-26816361 | Msa0447930:intron | 30.0% | |
| !! | ACTATTTCTGTGAGACAAAT+GGG | + | chr3_3:26816474-26816493 | None:intergenic | 30.0% |
| !! | AACTATTTCTGTGAGACAAA+TGG | + | chr3_3:26816475-26816494 | None:intergenic | 30.0% |
| !! | AATGTAAAACTGATTTGCAG+TGG | + | chr3_3:26816766-26816785 | None:intergenic | 30.0% |
| AAGTTATGTTAGAGAAAACG+CGG | + | chr3_3:26816986-26817005 | None:intergenic | 30.0% | |
| ! | CTTGCTTATGATATCTTTTC+AGG | - | chr3_3:26817003-26817022 | Msa0447930:intron | 30.0% |
| TAAAACAGTAAGACTTATGG+TGG | + | chr3_3:26817171-26817190 | None:intergenic | 30.0% | |
| GAATTTATCAATTTAACGGC+CGG | + | chr3_3:26817370-26817389 | None:intergenic | 30.0% | |
| AAAGATGAAAACCTTCTGTC+CGG | + | chr3_3:26812676-26812695 | None:intergenic | 35.0% | |
| TGCAGTATTATTGTCAATCG+CGG | + | chr3_3:26813051-26813070 | None:intergenic | 35.0% | |
| TCTTGTTAGGACAACAAAAC+TGG | + | chr3_3:26813094-26813113 | None:intergenic | 35.0% | |
| TCGCACTTGATTTATCAAGT+CGG | - | chr3_3:26813143-26813162 | Msa0447930:intron | 35.0% | |
| !!! | TTTTGAAGCTTTATAGGTGC+TGG | - | chr3_3:26813411-26813430 | Msa0447930:intron | 35.0% |
| AACCATGATGCATTGTGTTT+AGG | - | chr3_3:26813471-26813490 | Msa0447930:intron | 35.0% | |
| CCAGGTGTAACATTTATAAC+TGG | + | chr3_3:26813830-26813849 | None:intergenic | 35.0% | |
| CCAGTTATAAATGTTACACC+TGG | - | chr3_3:26813827-26813846 | Msa0447930:intron | 35.0% | |
| CAATGCAAAGTTTGTAAGTC+TGG | - | chr3_3:26813952-26813971 | Msa0447930:intron | 35.0% | |
| AGAAGAATACGGCTGAAATA+TGG | + | chr3_3:26814087-26814106 | None:intergenic | 35.0% | |
| TAATCTTGAGAGACCAAAAG+TGG | - | chr3_3:26814118-26814137 | Msa0447930:intron | 35.0% | |
| ! | GACCAAAAGTGGAAACTTTT+AGG | - | chr3_3:26814129-26814148 | Msa0447930:intron | 35.0% |
| !! | GCTAAGGGTAGATTACTTTT+GGG | - | chr3_3:26814162-26814181 | Msa0447930:intron | 35.0% |
| !! | TTACTTTTGGGTGAGATTCT+TGG | - | chr3_3:26814174-26814193 | Msa0447930:intron | 35.0% |
| TGTTGAGAGAGACTTGAAAA+AGG | - | chr3_3:26814292-26814311 | Msa0447930:intron | 35.0% | |
| GTTGAGAGAGACTTGAAAAA+GGG | - | chr3_3:26814293-26814312 | Msa0447930:intron | 35.0% | |
| TTGAGAGAGACTTGAAAAAG+GGG | - | chr3_3:26814294-26814313 | Msa0447930:intron | 35.0% | |
| ! | GATACGAAGAAATTAGCTTC+AGG | + | chr3_3:26814349-26814368 | None:intergenic | 35.0% |
| GAACAAAGATAAGAGAGTAG+AGG | + | chr3_3:26814472-26814491 | None:intergenic | 35.0% | |
| ! | TAGGTTGCTAGATTTGTTCT+AGG | - | chr3_3:26814522-26814541 | Msa0447930:CDS | 35.0% |
| ! | CTAGGTTGAATATTGTTGCT+TGG | - | chr3_3:26814540-26814559 | Msa0447930:CDS | 35.0% |
| ! | ATATTGTTGCTTGGACTGTT+TGG | - | chr3_3:26814549-26814568 | Msa0447930:CDS | 35.0% |
| !!! | GACCTTGTTTGTTTTGACAA+AGG | - | chr3_3:26814607-26814626 | Msa0447930:intron | 35.0% |
| ACCCTTTGTCAAAACAAACA+AGG | + | chr3_3:26814612-26814631 | None:intergenic | 35.0% | |
| CCAGAATCACCTAAATATTG+CGG | + | chr3_3:26815056-26815075 | None:intergenic | 35.0% | |
| AATATTTAGGTGATTCTGGC+TGG | - | chr3_3:26815057-26815076 | Msa0447930:intron | 35.0% | |
| ATGTCTCTACAGCCTTAATT+AGG | - | chr3_3:26815092-26815111 | Msa0447930:intron | 35.0% | |
| !!! | CCTTGATTTTTTGGTGTTCT+TGG | + | chr3_3:26815332-26815351 | None:intergenic | 35.0% |
| CCAAGAACACCAAAAAATCA+AGG | - | chr3_3:26815329-26815348 | Msa0447930:intron | 35.0% | |
| ! | CAGAAATTGAGATTGGTGAT+GGG | - | chr3_3:26815437-26815456 | Msa0447930:intron | 35.0% |
| TTTGTGGTCAATCTAATGTC+AGG | + | chr3_3:26815466-26815485 | None:intergenic | 35.0% | |
| TGATCCTATGAGATGATCTA+AGG | - | chr3_3:26815765-26815784 | Msa0447930:intron | 35.0% | |
| TAAGACTGTAAACTTACCCT+AGG | - | chr3_3:26815793-26815812 | Msa0447930:intron | 35.0% | |
| AAGACTGTAAACTTACCCTA+GGG | - | chr3_3:26815794-26815813 | Msa0447930:intron | 35.0% | |
| ! | ATCATCCTCATTGGCTAAAT+GGG | - | chr3_3:26815892-26815911 | Msa0447930:intron | 35.0% |
| GAAAAGTGACTCTTGTCTAA+AGG | + | chr3_3:26815995-26816014 | None:intergenic | 35.0% | |
| CAGAAGCAATACCATATTTC+TGG | + | chr3_3:26816059-26816078 | None:intergenic | 35.0% | |
| ! | GTTACTTGGTGAAATGAATG+TGG | - | chr3_3:26816155-26816174 | Msa0447930:intron | 35.0% |
| ! | TGCACATAGCTGAGAATTTT+CGG | - | chr3_3:26816274-26816293 | Msa0447930:intron | 35.0% |
| ! | CTTTTCATGCTCAAACTCAA+TGG | - | chr3_3:26816305-26816324 | Msa0447930:CDS | 35.0% |
| ! | CACACCAATGTACTTCTTTT+TGG | - | chr3_3:26817037-26817056 | Msa0447930:intron | 35.0% |
| ACTGAACAAGTGGAACAAAT+AGG | - | chr3_3:26817084-26817103 | Msa0447930:intron | 35.0% | |
| CACTTCCTTGCTTTACAACT+CGG | - | chr3_3:26812642-26812661 | Msa0447930:three_prime_UTR | 40.0% | |
| TAAGACCGAGTTGTAAAGCA+AGG | + | chr3_3:26812650-26812669 | None:intergenic | 40.0% | |
| AAGATGAAAACCTTCTGTCC+GGG | + | chr3_3:26812675-26812694 | None:intergenic | 40.0% | |
| !!! | TAGGTTTTGGATGTTGGTTG+TGG | - | chr3_3:26812792-26812811 | Msa0447930:three_prime_UTR | 40.0% |
| ! | TTGGATGTTGGTTGTGGTAT+TGG | - | chr3_3:26812798-26812817 | Msa0447930:three_prime_UTR | 40.0% |
| ! | TGGATGTTGGTTGTGGTATT+GGG | - | chr3_3:26812799-26812818 | Msa0447930:three_prime_UTR | 40.0% |
| ATCGCTGAGAATTCGTAAGA+TGG | + | chr3_3:26812867-26812886 | None:intergenic | 40.0% | |
| TAGCATTGTGGCATCACTAT+TGG | + | chr3_3:26812900-26812919 | None:intergenic | 40.0% | |
| TCCACTATGCTATAGCATTG+TGG | + | chr3_3:26812912-26812931 | None:intergenic | 40.0% | |
| AAGACGAGGAAACATAGAGA+TGG | + | chr3_3:26813214-26813233 | None:intergenic | 40.0% | |
| ATAATGAGTACCAGATCACC+AGG | - | chr3_3:26813324-26813343 | Msa0447930:intron | 40.0% | |
| TAATGAGTACCAGATCACCA+GGG | - | chr3_3:26813325-26813344 | Msa0447930:intron | 40.0% | |
| TGCCTAAACACAATGCATCA+TGG | + | chr3_3:26813476-26813495 | None:intergenic | 40.0% | |
| ! | GGGTTGAAAAATGGGGTTTT+AGG | - | chr3_3:26814008-26814027 | Msa0447930:CDS | 40.0% |
| ! | GGCTAAGGGTAGATTACTTT+TGG | - | chr3_3:26814161-26814180 | Msa0447930:intron | 40.0% |
| TTTGGGTGAGATTCTTGGAT+TGG | - | chr3_3:26814179-26814198 | Msa0447930:intron | 40.0% | |
| !! | AAGACTCATTCATAGTGGAC+CGG | - | chr3_3:26814376-26814395 | Msa0447930:intron | 40.0% |
| CTGAACTGGGTAAACAATCT+TGG | - | chr3_3:26814436-26814455 | Msa0447930:intron | 40.0% | |
| ! | AATGCTGATGAGAGAGCTTT+TGG | - | chr3_3:26814657-26814676 | Msa0447930:intron | 40.0% |
| !! | ATCAAGACTGTGATTTTGGC+TGG | - | chr3_3:26814982-26815001 | Msa0447930:intron | 40.0% |
| ! | CCAGGTTTTTGATGTCTCTA+CGG | - | chr3_3:26815006-26815025 | Msa0447930:intron | 40.0% |
| ATGTCTCTACGGCCTTAATT+AGG | - | chr3_3:26815017-26815036 | Msa0447930:intron | 40.0% | |
| CAAGTGAGAAGGCCTAATTA+AGG | + | chr3_3:26815032-26815051 | None:intergenic | 40.0% | |
| AATATTGCGGTCAAGTGAGA+AGG | + | chr3_3:26815043-26815062 | None:intergenic | 40.0% | |
| CTCACTTGACCGCAATATTT+AGG | - | chr3_3:26815044-26815063 | Msa0447930:intron | 40.0% | |
| CCGCAATATTTAGGTGATTC+TGG | - | chr3_3:26815053-26815072 | Msa0447930:intron | 40.0% | |
| CTGTAGAGACATCAAAAACC+TGG | + | chr3_3:26815084-26815103 | None:intergenic | 40.0% | |
| AAGACAAAATTCCTTGCTGC+AGG | - | chr3_3:26815414-26815433 | Msa0447930:intron | 40.0% | |
| GCAGAAATTGAGATTGGTGA+TGG | - | chr3_3:26815436-26815455 | Msa0447930:intron | 40.0% | |
| TAGAGCTTCAAGACACTTTG+TGG | + | chr3_3:26815482-26815501 | None:intergenic | 40.0% | |
| AGACTGTAAACTTACCCTAG+GGG | - | chr3_3:26815795-26815814 | Msa0447930:intron | 40.0% | |
| ! | GATCATCCTCATTGGCTAAA+TGG | - | chr3_3:26815891-26815910 | Msa0447930:intron | 40.0% |
| AAACTCCCATTTAGCCAATG+AGG | + | chr3_3:26815900-26815919 | None:intergenic | 40.0% | |
| ATGGGAGAAAGATCTAGCAT+CGG | - | chr3_3:26815946-26815965 | Msa0447930:intron | 40.0% | |
| TTGTCTAAAGGCAAGTACCA+AGG | + | chr3_3:26815983-26816002 | None:intergenic | 40.0% | |
| ! | ACGCCTTTTCACCAGAAATA+TGG | - | chr3_3:26816045-26816064 | Msa0447930:intron | 40.0% |
| GCTCAAACTCAATGGTTGTT+TGG | - | chr3_3:26816313-26816332 | Msa0447930:CDS | 40.0% | |
| GGTTCAAGATTTCCTTGAGA+AGG | - | chr3_3:26816405-26816424 | Msa0447930:intron | 40.0% | |
| TACAAGAGTTAAGGTCCGTT+TGG | - | chr3_3:26816842-26816861 | Msa0447930:intron | 40.0% | |
| !! | CAATGTACTTCTTTTTGGCG+CGG | - | chr3_3:26817042-26817061 | Msa0447930:intron | 40.0% |
| TCAGAAAGCAACTGAACAAG+TGG | - | chr3_3:26817074-26817093 | Msa0447930:intron | 40.0% | |
| TCACGAGTTACTGTGATTCT+AGG | - | chr3_3:26817116-26817135 | Msa0447930:intron | 40.0% | |
| ACTACACTATCCACTAATGC+AGG | + | chr3_3:26817259-26817278 | None:intergenic | 40.0% | |
| TTACAACTCGGTCTTAAGCC+CGG | - | chr3_3:26812654-26812673 | Msa0447930:three_prime_UTR | 45.0% | |
| ! | GGATGTTGGTTGTGGTATTG+GGG | - | chr3_3:26812800-26812819 | Msa0447930:three_prime_UTR | 45.0% |
| ! | GATGTTGGTTGTGGTATTGG+GGG | - | chr3_3:26812801-26812820 | Msa0447930:three_prime_UTR | 45.0% |
| GCCACAATGCTATAGCATAG+TGG | - | chr3_3:26812908-26812927 | Msa0447930:three_prime_UTR | 45.0% | |
| GGACAACAAAACTGGCAACT+AGG | + | chr3_3:26813086-26813105 | None:intergenic | 45.0% | |
| GCGAGTCATCTGATCTTGTT+AGG | + | chr3_3:26813107-26813126 | None:intergenic | 45.0% | |
| AGCATGATTCTCTGACTGCA+GGG | - | chr3_3:26813179-26813198 | Msa0447930:intron | 45.0% | |
| TTCTCTGACTGCAGGGAATT+TGG | - | chr3_3:26813186-26813205 | Msa0447930:intron | 45.0% | |
| ACAAGGAAGAGCAAAAGACG+AGG | + | chr3_3:26813228-26813247 | None:intergenic | 45.0% | |
| TGCAGCTTGACATCTGTTAC+AGG | - | chr3_3:26813293-26813312 | Msa0447930:intron | 45.0% | |
| AATGAGTACCAGATCACCAG+GGG | - | chr3_3:26813326-26813345 | Msa0447930:intron | 45.0% | |
| CAAAACACATACCTTTCCCC+TGG | + | chr3_3:26813345-26813364 | None:intergenic | 45.0% | |
| ACTCAATCGCAAAACTGGAG+TGG | - | chr3_3:26813685-26813704 | Msa0447930:intron | 45.0% | |
| CAAGACTTGCAACTTCGTCA+AGG | - | chr3_3:26813709-26813728 | Msa0447930:intron | 45.0% | |
| ACTTGCAACTTCGTCAAGGT+CGG | - | chr3_3:26813713-26813732 | Msa0447930:intron | 45.0% | |
| TGATGAGATCTCACTACCCA+AGG | + | chr3_3:26814222-26814241 | None:intergenic | 45.0% | |
| AGTGAGATCTCATCAGAGGA+AGG | - | chr3_3:26814227-26814246 | Msa0447930:intron | 45.0% | |
| CCAAATTGACCTACGTCTAG+GGG | + | chr3_3:26814415-26814434 | None:intergenic | 45.0% | |
| CCCAAATTGACCTACGTCTA+GGG | + | chr3_3:26814416-26814435 | None:intergenic | 45.0% | |
| CCCTAGACGTAGGTCAATTT+GGG | - | chr3_3:26814413-26814432 | Msa0447930:intron | 45.0% | |
| TAGGTCAATTTGGGCTGAAC+TGG | - | chr3_3:26814422-26814441 | Msa0447930:intron | 45.0% | |
| AGGTCAATTTGGGCTGAACT+GGG | - | chr3_3:26814423-26814442 | Msa0447930:intron | 45.0% | |
| TGCTTGGACTGTTTGGTTGA+TGG | - | chr3_3:26814556-26814575 | Msa0447930:CDS | 45.0% | |
| CCGTAGAGACATCAAAAACC+TGG | + | chr3_3:26815009-26815028 | None:intergenic | 45.0% | |
| CGAGTGTGAAGGCCTAATTA+AGG | + | chr3_3:26815107-26815126 | None:intergenic | 45.0% | |
| AATATTGCGGTCGAGTGTGA+AGG | + | chr3_3:26815118-26815137 | None:intergenic | 45.0% | |
| TAAGCAGCAAAACATTGGCC+AGG | + | chr3_3:26815273-26815292 | None:intergenic | 45.0% | |
| CTGCAGGCAGAAATTGAGAT+TGG | - | chr3_3:26815430-26815449 | Msa0447930:intron | 45.0% | |
| !! | CTTGAAGCTCTAAAGCAAGC+AGG | - | chr3_3:26815490-26815509 | Msa0447930:intron | 45.0% |
| ! | TCTAAAGCAAGCAGGCTTTG+AGG | - | chr3_3:26815498-26815517 | Msa0447930:intron | 45.0% |
| CGTGCCTTAGATCATCTCAT+AGG | + | chr3_3:26815772-26815791 | None:intergenic | 45.0% | |
| AAAGGCAAGTACCAAGGAAG+AGG | + | chr3_3:26815977-26815996 | None:intergenic | 45.0% | |
| ACTTAGCAGCTTCCGTCTAA+CGG | - | chr3_3:26816015-26816034 | Msa0447930:intron | 45.0% | |
| ACATTTGTAGGTGAAGGCTC+TGG | - | chr3_3:26816348-26816367 | Msa0447930:intron | 45.0% | |
| ! | TTTGTTGGACTTGCTCCGAA+GGG | - | chr3_3:26816373-26816392 | Msa0447930:intron | 45.0% |
| ! | CGCGCCAAAAAGAAGTACAT+TGG | + | chr3_3:26817044-26817063 | None:intergenic | 45.0% |
| !! | GTTCAGTTGCTTTCTGAAGC+AGG | + | chr3_3:26817071-26817090 | None:intergenic | 45.0% |
| CAATGTGCTTCCTGCATTAG+TGG | - | chr3_3:26817246-26817265 | Msa0447930:intron | 45.0% | |
| CAGCATGATTCTCTGACTGC+AGG | - | chr3_3:26813178-26813197 | Msa0447930:intron | 50.0% | |
| ATACCTTTCCCCTGGTGATC+TGG | + | chr3_3:26813337-26813356 | None:intergenic | 50.0% | |
| CAGGCACTCAATCGCAAAAC+TGG | - | chr3_3:26813680-26813699 | Msa0447930:intron | 50.0% | |
| !! | TGCGAGGCGGGTTGAAAAAT+GGG | - | chr3_3:26814000-26814019 | Msa0447930:CDS | 50.0% |
| GGGTAGTGAGATCTCATCAG+AGG | - | chr3_3:26814223-26814242 | Msa0447930:intron | 50.0% | |
| CCCCTAGACGTAGGTCAATT+TGG | - | chr3_3:26814412-26814431 | Msa0447930:intron | 50.0% | |
| GCCCAAATTGACCTACGTCT+AGG | + | chr3_3:26814417-26814436 | None:intergenic | 50.0% | |
| CACATACAGCATCTGGTGCA+TGG | + | chr3_3:26814863-26814882 | None:intergenic | 50.0% | |
| !!! | ACTGTGATTTTGGCTGGTCC+AGG | - | chr3_3:26814988-26815007 | Msa0447930:intron | 50.0% |
| CTCAATTTCTGCCTGCAGCA+AGG | + | chr3_3:26815428-26815447 | None:intergenic | 50.0% | |
| !! | GTGAAGGCTCTGGAGTTTGT+TGG | - | chr3_3:26816358-26816377 | Msa0447930:intron | 50.0% |
| ! | GTTTGTTGGACTTGCTCCGA+AGG | - | chr3_3:26816372-26816391 | Msa0447930:intron | 50.0% |
| ! | TTGTTGGACTTGCTCCGAAG+GGG | - | chr3_3:26816374-26816393 | Msa0447930:intron | 50.0% |
| TGAACCCTTTGACTCCCCTT+CGG | + | chr3_3:26816391-26816410 | None:intergenic | 50.0% | |
| TTTCCTTGAGAAGGCTGCAG+AGG | - | chr3_3:26816414-26816433 | Msa0447930:intron | 50.0% | |
| TTCCTTGAGAAGGCTGCAGA+GGG | - | chr3_3:26816415-26816434 | Msa0447930:intron | 50.0% | |
| GTACCAGATCACCAGGGGAA+AGG | - | chr3_3:26813331-26813350 | Msa0447930:intron | 55.0% | |
| !! | CTGCGAGGCGGGTTGAAAAA+TGG | - | chr3_3:26813999-26814018 | Msa0447930:CDS | 55.0% |
| !! | GCGAGGCGGGTTGAAAAATG+GGG | - | chr3_3:26814001-26814020 | Msa0447930:CDS | 55.0% |
| TACAGCATCTGGTGCATGGC+AGG | + | chr3_3:26814859-26814878 | None:intergenic | 55.0% | |
| ! | TAGGTGATTCTGGCTGGTCC+AGG | - | chr3_3:26815063-26815082 | Msa0447930:intron | 55.0% |
| CATCGGACTCTCCTCTTCCT+TGG | - | chr3_3:26815963-26815982 | Msa0447930:intron | 55.0% | |
| AGCTTCCGTCTAACGGCTGT+TGG | - | chr3_3:26816022-26816041 | Msa0447930:intron | 55.0% | |
| TTGCTCCGAAGGGGAGTCAA+AGG | - | chr3_3:26816383-26816402 | Msa0447930:intron | 55.0% | |
| TGCTCCGAAGGGGAGTCAAA+GGG | - | chr3_3:26816384-26816403 | Msa0447930:intron | 55.0% | |
| GCTGCAGAGGGTCTAGTTGA+AGG | - | chr3_3:26816427-26816446 | Msa0447930:intron | 55.0% | |
| GCAGAGGGTCTAGTTGAAGG+TGG | - | chr3_3:26816430-26816449 | Msa0447930:intron | 55.0% | |
| CGGTCTTAAGCCCGGACAGA+AGG | - | chr3_3:26812662-26812681 | Msa0447930:three_prime_UTR | 60.0% | |
| TTTCAACCCGCCTCGCAGCT+GGG | + | chr3_3:26813997-26814016 | None:intergenic | 60.0% | |
| ! | TTTTCAACCCGCCTCGCAGC+TGG | + | chr3_3:26813998-26814017 | None:intergenic | 60.0% |
| TTGACACTGCGTCATCCGCG+AGG | - | chr3_3:26814035-26814054 | Msa0447930:CDS | 60.0% | |
| ACCCGGAAGAACGTTGCAGC+AGG | - | chr3_3:26814059-26814078 | Msa0447930:CDS | 60.0% | |
| GCCTGCTGCAACGTTCTTCC+GGG | + | chr3_3:26814063-26814082 | None:intergenic | 60.0% | |
| CGCCTGCTGCAACGTTCTTC+CGG | + | chr3_3:26814064-26814083 | None:intergenic | 60.0% | |
| TAGGGGAGAGAGCAGCTCTC+CGG | + | chr3_3:26814398-26814417 | None:intergenic | 60.0% | |
| CTGCTCTCTCCCCTAGACGT+AGG | - | chr3_3:26814403-26814422 | Msa0447930:intron | 60.0% | |
| AGCATCTGGTGCATGGCAGG+TGG | + | chr3_3:26814856-26814875 | None:intergenic | 60.0% | |
| GGCGTCCAACAGCCGTTAGA+CGG | + | chr3_3:26816030-26816049 | None:intergenic | 60.0% | |
| GACCCTCTGCAGCCTTCTCA+AGG | + | chr3_3:26816420-26816439 | None:intergenic | 60.0% | |
| ATGCCTCTGTCCCAGCTGCG+AGG | - | chr3_3:26813984-26814003 | Msa0447930:CDS | 65.0% | |
| ACGTTCTTCCGGGTGCCTCG+CGG | + | chr3_3:26814053-26814072 | None:intergenic | 65.0% | |
| CCTCTGTCCCAGCTGCGAGG+CGG | - | chr3_3:26813987-26814006 | Msa0447930:CDS | 70.0% | |
| CTCTGTCCCAGCTGCGAGGC+GGG | - | chr3_3:26813988-26814007 | Msa0447930:CDS | 70.0% | |
| ! | TGCGTCATCCGCGAGGCACC+CGG | - | chr3_3:26814042-26814061 | Msa0447930:CDS | 70.0% |
| CCGCCTCGCAGCTGGGACAG+AGG | + | chr3_3:26813990-26814009 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 26812597 | 26817429 | 26812597 | ID=Msa0447930;Name=Msa0447930 |
| chr3_3 | mRNA | 26812597 | 26817429 | 26812597 | ID=Msa0447930-mRNA-1;Parent=Msa0447930;Name=Msa0447930-mRNA-1;_AED=0.14;_eAED=0.14;_QI=40|0.87|1|1|1|1|9|341|240 |
| chr3_3 | exon | 26812597 | 26813001 | 26812597 | ID=Msa0447930-mRNA-1:exon:5239;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26813571 | 26813668 | 26813571 | ID=Msa0447930-mRNA-1:exon:5238;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26813960 | 26814085 | 26813960 | ID=Msa0447930-mRNA-1:exon:5237;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26814507 | 26814590 | 26814507 | ID=Msa0447930-mRNA-1:exon:5236;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26814676 | 26814792 | 26814676 | ID=Msa0447930-mRNA-1:exon:5235;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26815151 | 26815234 | 26815151 | ID=Msa0447930-mRNA-1:exon:5234;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26816296 | 26816343 | 26816296 | ID=Msa0447930-mRNA-1:exon:5233;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26816674 | 26816728 | 26816674 | ID=Msa0447930-mRNA-1:exon:5232;Parent=Msa0447930-mRNA-1 |
| chr3_3 | exon | 26817343 | 26817429 | 26817343 | ID=Msa0447930-mRNA-1:exon:5231;Parent=Msa0447930-mRNA-1 |
| chr3_3 | five_prime_UTR | 26817390 | 26817429 | 26817390 | ID=Msa0447930-mRNA-1:five_prime_utr;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26817343 | 26817389 | 26817343 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26816674 | 26816728 | 26816674 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26816296 | 26816343 | 26816296 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26815151 | 26815234 | 26815151 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26814676 | 26814792 | 26814676 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26814507 | 26814590 | 26814507 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26813960 | 26814085 | 26813960 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26813571 | 26813668 | 26813571 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | CDS | 26812938 | 26813001 | 26812938 | ID=Msa0447930-mRNA-1:cds;Parent=Msa0447930-mRNA-1 |
| chr3_3 | three_prime_UTR | 26812597 | 26812937 | 26812597 | ID=Msa0447930-mRNA-1:three_prime_utr;Parent=Msa0447930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
