AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226620 MtrunA17_Chr2g0332571 99.333 150 1 0 1 150 1 150 2.48e-109 307
Msa0226620 MtrunA17_Chr4g0003811 75.325 154 28 4 1 149 1 149 2.48e-75 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226620 AT1G80230.1 61.392 158 42 3 1 140 1 157 5.64e-59 181
Msa0226620 AT3G15640.2 58.491 159 45 4 1 140 1 157 1.55e-52 164
Msa0226620 AT3G15640.1 57.862 159 47 3 1 140 1 158 1.04e-51 162
Msa0226620 AT1G52710.1 59.302 86 35 0 65 150 4 89 2.01e-33 113

Find 105 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCGTTGCTATCAATTATT+AGG 0.262008 2_1:+77140832 None:intergenic
AGCATGATGTTGTCTGGTTT+TGG 0.271011 2_1:-77142301 Msa0226620:CDS
GAGAATGAGATGAAGAAGTT+AGG 0.298612 2_1:+77144993 None:intergenic
TGTCCCATGTTTGAATTCTA+AGG 0.300229 2_1:+77140665 None:intergenic
GGAAACTTTGGTTCCTTAAT+CGG 0.319479 2_1:-77140480 Msa0226620:three_prime_UTR
CCGTCACGTGCTAATTCGTT+TGG 0.329404 2_1:-77145218 Msa0226620:five_prime_UTR
TCACGTTGCAATGCTTTGTT+TGG 0.352341 2_1:-77140963 Msa0226620:three_prime_UTR
GGAATGTAAAACAATCTCTT+TGG 0.352887 2_1:+77140998 None:intergenic
CGCGCTCAAGTTTAACTTCA+AGG 0.362659 2_1:+77145194 None:intergenic
ATTAAGCTACAAATCCTGTT+AGG 0.366895 2_1:-77140872 Msa0226620:three_prime_UTR
TTAAATTAAGAGGGAAACTT+TGG 0.368684 2_1:-77140492 Msa0226620:three_prime_UTR
GGGCACTCAAAATCCGATTA+AGG 0.369464 2_1:+77140467 None:intergenic
GACCACCCTGAAGGTCCTTT+TGG 0.374661 2_1:-77144056 Msa0226620:CDS
TTTGAGATCTACGGTGGTTA+CGG 0.386481 2_1:+77145061 None:intergenic
TTCGTGCCAAAAGGACCTTC+AGG 0.388454 2_1:+77144050 None:intergenic
AGTCAAGTCACAACAGTAAC+TGG 0.389318 2_1:+77140582 None:intergenic
CGGCGTCGTTTGATTGGAAA+TGG 0.390861 2_1:+77145081 None:intergenic
GGACCTGGCGGTGATCCTTA+TGG 0.392481 2_1:-77141066 Msa0226620:CDS
CGTCACGTGCTAATTCGTTT+GGG 0.403376 2_1:-77145217 Msa0226620:five_prime_UTR
CGTTCATGACCGGTAGCAAT+TGG 0.405824 2_1:+77144791 None:intergenic
TACTATAACAGAAGGATTGT+TGG 0.415818 2_1:-77142467 Msa0226620:CDS
GGCGACGTGGCGGCTGAGGC+CGG 0.418601 2_1:+77144937 None:intergenic
CTATTTGAAATTAAATTAAG+AGG 0.427196 2_1:-77140502 Msa0226620:three_prime_UTR
AGAATGAGATGAAGAAGTTA+GGG 0.429164 2_1:+77144994 None:intergenic
TGCACACACTGGACATTCAT+GGG 0.432638 2_1:+77142262 None:intergenic
TGGTTACGGCGTCGTTTGAT+TGG 0.435570 2_1:+77145075 None:intergenic
TATACACCTCACCATCAAAT+GGG 0.436632 2_1:-77145270 None:intergenic
GTGCACACACTGGACATTCA+TGG 0.436671 2_1:+77142261 None:intergenic
TGTTGGATGCCCCGGTGGTG+AGG 0.446924 2_1:-77142450 Msa0226620:CDS
CGCCACGTCGCCACACAATC+AGG 0.449393 2_1:-77144926 Msa0226620:intron
CACTTACCACCCTCACCACC+GGG 0.453277 2_1:+77142440 None:intergenic
CTTCAGGGTGGTCTATTTCA+AGG 0.458207 2_1:+77144066 None:intergenic
GGCGGCTGAGGCCGGCGAAT+CGG 0.463992 2_1:+77144945 None:intergenic
ATATACACCTCACCATCAAA+TGG 0.464682 2_1:-77145271 None:intergenic
ACACTTACCACCCTCACCAC+CGG 0.473884 2_1:+77142439 None:intergenic
GTTGTGACTTGACTGTTGGT+TGG 0.474792 2_1:-77140573 Msa0226620:three_prime_UTR
GTTGGATGCCCCGGTGGTGA+GGG 0.475405 2_1:-77142449 Msa0226620:CDS
TACTGTTGTGACTTGACTGT+TGG 0.480725 2_1:-77140577 Msa0226620:three_prime_UTR
TTTGGAAAATTTATTCCTGA+AGG 0.482002 2_1:+77141016 None:intergenic
GTGTGGCGACGTGGCGGCTG+AGG 0.482725 2_1:+77144933 None:intergenic
TCTGATCAATGGTGTCCATA+AGG 0.484112 2_1:+77141051 None:intergenic
TTACTAACCTTCGTGCCAAA+AGG 0.484133 2_1:+77144041 None:intergenic
CATCCTCGATCCGCCGTCGC+CGG 0.485063 2_1:-77144971 Msa0226620:CDS
AGCCTCCGCTTTGATCCATT+AGG 0.487703 2_1:-77140711 Msa0226620:three_prime_UTR
GGTTGTGATTGTAGCTGGTT+CGG 0.494202 2_1:-77144840 Msa0226620:intron
AGGATGAGCATGATGTTGTC+TGG 0.496376 2_1:-77142307 Msa0226620:CDS
GGCGAATCGGAGACCGGCGA+CGG 0.501941 2_1:+77144958 None:intergenic
CAGCTTGAAGTGGTGGGACC+TGG 0.505788 2_1:-77141081 Msa0226620:CDS
TGCGTTACAGCTTGAAGTGG+TGG 0.516079 2_1:-77141088 Msa0226620:intron
GTCGCCGGTCTCCGATTCGC+CGG 0.516296 2_1:-77144956 Msa0226620:CDS
TTCTGTGATTATTTAGACAC+AGG 0.517900 2_1:-77140906 Msa0226620:three_prime_UTR
TGAAAATACTGTGCACACAC+TGG 0.523295 2_1:+77142251 None:intergenic
AGAAGGATTGTTGGATGCCC+CGG 0.526647 2_1:-77142458 Msa0226620:CDS
GTTTGATTGGAAATGGAAGA+AGG 0.531244 2_1:+77145088 None:intergenic
AAACTGCAGCATCTGATCAA+TGG 0.533620 2_1:+77141040 None:intergenic
TTTAGCACCTATCCACAAAA+GGG 0.535268 2_1:-77140756 Msa0226620:three_prime_UTR
AAACATCAGTTGGTGGATGA+AGG 0.535871 2_1:+77140624 None:intergenic
TCGTGCCAAAAGGACCTTCA+GGG 0.538959 2_1:+77144051 None:intergenic
TTAAGTCTTACTATAACAGA+AGG 0.543566 2_1:-77142475 Msa0226620:CDS
GAGGCCGGCGAATCGGAGAC+CGG 0.548914 2_1:+77144952 None:intergenic
TAGTAAGACTTAACAACGGC+AGG 0.550387 2_1:+77142485 None:intergenic
GCGTTACAGCTTGAAGTGGT+GGG 0.554549 2_1:-77141087 Msa0226620:intron
AATCTCCTCACGTTCATGAC+CGG 0.554757 2_1:+77144781 None:intergenic
TATTTGAAATTAAATTAAGA+GGG 0.555579 2_1:-77140501 Msa0226620:three_prime_UTR
AACGATTCTCCGCCACATGA+TGG 0.566084 2_1:+77145036 None:intergenic
GGATGCCCCGGTGGTGAGGG+TGG 0.570608 2_1:-77142446 Msa0226620:intron
GATGTAGTTCCAATTGCTAC+CGG 0.573966 2_1:-77144800 Msa0226620:CDS
TAGTCCTTAGAATTCAAACA+TGG 0.582114 2_1:-77140669 Msa0226620:three_prime_UTR
CAAACGAATTAGCACGTGAC+GGG 0.584689 2_1:+77145219 None:intergenic
GAATCGGAGACCGGCGACGG+CGG 0.589478 2_1:+77144961 None:intergenic
AGACCGGCGACGGCGGATCG+AGG 0.592370 2_1:+77144968 None:intergenic
TGTCCATAAGGATCACCGCC+AGG 0.601139 2_1:+77141063 None:intergenic
CACCTAATGGATCAAAGCGG+AGG 0.601580 2_1:+77140709 None:intergenic
TCTGTGATTATTTAGACACA+GGG 0.605541 2_1:-77140905 Msa0226620:three_prime_UTR
TAGGTGCTAAAAGTAGCTGC+AGG 0.612310 2_1:+77140768 None:intergenic
ATGATGGTGTTTGAGATCTA+CGG 0.616818 2_1:+77145052 None:intergenic
GGTGGATGAAGGTCGACGGA+GGG 0.620313 2_1:+77140635 None:intergenic
TTCTGCGTTACAGCTTGAAG+TGG 0.625576 2_1:-77141091 Msa0226620:intron
TTTGACTGGTCTAGACCTTG+CGG 0.626127 2_1:-77140939 Msa0226620:three_prime_UTR
TGCTACCGGTCATGAACGTG+AGG 0.630864 2_1:-77144786 Msa0226620:CDS
ATACACCTCACCATCAAATG+GGG 0.632824 2_1:-77145269 Msa0226620:five_prime_UTR
TTCGGTGAAGAAGACAGTTG+AGG 0.641042 2_1:-77144822 Msa0226620:CDS
AGTTGGTGGATGAAGGTCGA+CGG 0.643643 2_1:+77140631 None:intergenic
TGGTGGATGAAGGTCGACGG+AGG 0.645297 2_1:+77140634 None:intergenic
GGAGATTCAAGCTGATCTTG+AGG 0.651732 2_1:-77144765 Msa0226620:intron
AGTCCTTAGAATTCAAACAT+GGG 0.652398 2_1:-77140668 Msa0226620:three_prime_UTR
CAAGTCACAACAGTAACTGG+TGG 0.653149 2_1:+77140585 None:intergenic
CTTGAAATAGACCACCCTGA+AGG 0.658668 2_1:-77144065 Msa0226620:CDS
GCACACACTGGACATTCATG+GGG 0.668546 2_1:+77142263 None:intergenic
TACCTGATTGTGTGGCGACG+TGG 0.669661 2_1:+77144924 None:intergenic
CAGAAACTCTCTGAACCGCA+AGG 0.670121 2_1:+77140924 None:intergenic
CCAAACGAATTAGCACGTGA+CGG 0.679687 2_1:+77145218 None:intergenic
CTTGAAGTGGTGGGACCTGG+CGG 0.684429 2_1:-77141078 Msa0226620:CDS
AGATCTCAAACACCATCATG+TGG 0.684707 2_1:-77145048 Msa0226620:exon
AGTGAAGATACCTGATTGTG+TGG 0.687822 2_1:+77144916 None:intergenic
CTGATTGTGTGGCGACGTGG+CGG 0.691244 2_1:+77144927 None:intergenic
TCTCAAACACCATCATGTGG+CGG 0.696333 2_1:-77145045 Msa0226620:exon
TACACCTCACCATCAAATGG+GGG 0.699292 2_1:-77145268 Msa0226620:five_prime_UTR
GTGATTATTTAGACACAGGG+TGG 0.700670 2_1:-77140902 Msa0226620:three_prime_UTR
AGGATTGTTGGATGCCCCGG+TGG 0.708518 2_1:-77142455 Msa0226620:CDS
TGCCAAAAGGACCTTCAGGG+TGG 0.711901 2_1:+77144054 None:intergenic
GTTATAGTAAGACTTAACAA+CGG 0.724381 2_1:+77142481 None:intergenic
ATGGTGTTTGAGATCTACGG+TGG 0.739505 2_1:+77145055 None:intergenic
TTTCACCTAATGGATCAAAG+CGG 0.742764 2_1:+77140706 None:intergenic
ACTTACCACCCTCACCACCG+GGG 0.751343 2_1:+77142441 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTATTAAATATATCAAATT+TGG - chr2_1:77142722-77142741 Msa0226620:intron 10.0%
!! TAAAATAAATAAGAATATGT+TGG + chr2_1:77143894-77143913 None:intergenic 10.0%
!!! TATTTGAAATTAAATTAAGA+GGG - chr2_1:77145229-77145248 Msa0226620:five_prime_UTR 10.0%
!! CACAAGTTATAAATAAAAAA+TGG + chr2_1:77141096-77141115 None:intergenic 15.0%
!!! TGATTTTAAATTTTAATCTG+AGG - chr2_1:77141224-77141243 Msa0226620:intron 15.0%
!! CATTTAAAAACTTTAGTAAT+GGG + chr2_1:77141336-77141355 None:intergenic 15.0%
!! ACATTTAAAAACTTTAGTAA+TGG + chr2_1:77141337-77141356 None:intergenic 15.0%
!!! ACTAAAGTTTTTAAATGTTT+TGG - chr2_1:77141339-77141358 Msa0226620:intron 15.0%
!!! CTAAAGTTTTTAAATGTTTT+GGG - chr2_1:77141340-77141359 Msa0226620:intron 15.0%
!!! TAAAGTTTTTAAATGTTTTG+GGG - chr2_1:77141341-77141360 Msa0226620:intron 15.0%
!!! TTTGTATTTTTTGTTTGTTT+AGG - chr2_1:77141631-77141650 Msa0226620:intron 15.0%
!!! TTGTATTTTTTGTTTGTTTA+GGG - chr2_1:77141632-77141651 Msa0226620:intron 15.0%
!!! AAAATCACTTTTCTAAATTA+AGG + chr2_1:77141879-77141898 None:intergenic 15.0%
!!! TTAATTTAGAAAAGTGATTT+TGG - chr2_1:77141878-77141897 Msa0226620:intron 15.0%
!! TTTATACTTTAATTACCTAA+AGG - chr2_1:77141948-77141967 Msa0226620:intron 15.0%
!! TTATACTTTAATTACCTAAA+GGG - chr2_1:77141949-77141968 Msa0226620:intron 15.0%
!!! TATTTAATCTTTTTGAAGTT+TGG - chr2_1:77142098-77142117 Msa0226620:intron 15.0%
!! AATAATTTCTCTTTAAACTA+AGG + chr2_1:77142151-77142170 None:intergenic 15.0%
!! ATATATGATAGAACATTATA+GGG - chr2_1:77142209-77142228 Msa0226620:intron 15.0%
!!! ATTTTTGAAGAATGATAATT+TGG + chr2_1:77142432-77142451 None:intergenic 15.0%
!!! GTTTATAACTTTATTTTTAC+TGG - chr2_1:77143519-77143538 Msa0226620:intron 15.0%
!!! ATTTAACTAGAATTTGAAAT+TGG + chr2_1:77144520-77144539 None:intergenic 15.0%
!!! CTATTTGAAATTAAATTAAG+AGG - chr2_1:77145228-77145247 Msa0226620:five_prime_UTR 15.0%
!!! GATTTTGATGAATTTTGATT+TGG - chr2_1:77140869-77140888 Msa0226620:three_prime_UTR 20.0%
!! ACAAAATGGAAAAATAAAAG+TGG + chr2_1:77141153-77141172 None:intergenic 20.0%
!!! TTTAGTAATGGGATAATAAA+TGG + chr2_1:77141325-77141344 None:intergenic 20.0%
!! TATTTCCAAAACTATAGTAA+TGG - chr2_1:77141403-77141422 Msa0226620:intron 20.0%
!!! TTTGAAATAGCAACTATATT+GGG + chr2_1:77141467-77141486 None:intergenic 20.0%
!!! TTTTGAAATAGCAACTATAT+TGG + chr2_1:77141468-77141487 None:intergenic 20.0%
!!! CATATTATATAGGTTACTTT+TGG - chr2_1:77141588-77141607 Msa0226620:intron 20.0%
!!! AATGGTTTTGGTTTATTTTT+TGG - chr2_1:77141850-77141869 Msa0226620:intron 20.0%
!!! TGTGTTGTTAAAAATCATTA+TGG - chr2_1:77141922-77141941 Msa0226620:intron 20.0%
!! ACAATATGAAAAATGAAACA+GGG + chr2_1:77141982-77142001 None:intergenic 20.0%
!!! TTTTATCTTACAATTGAGTA+TGG + chr2_1:77142068-77142087 None:intergenic 20.0%
!! CTCAATTGTAAGATAAAATA+TGG - chr2_1:77142070-77142089 Msa0226620:intron 20.0%
!! GATATATGATAGAACATTAT+AGG - chr2_1:77142208-77142227 Msa0226620:intron 20.0%
!!! TATTTTCTGTCTTTAAACTT+TGG + chr2_1:77142948-77142967 None:intergenic 20.0%
!! CAAGTCATTCAAATTATTAA+AGG + chr2_1:77143697-77143716 None:intergenic 20.0%
!!! TATAAATTCTGCACAAATTT+TGG + chr2_1:77144322-77144341 None:intergenic 20.0%
!! AGTCATTTATATGAAAAATG+TGG - chr2_1:77145191-77145210 Msa0226620:five_prime_UTR 20.0%
! ATTCATCAAAATCAAGAAGA+AGG + chr2_1:77140862-77140881 None:intergenic 25.0%
! ATATCAGAATAAGAGTAGTT+CGG + chr2_1:77141196-77141215 None:intergenic 25.0%
! TTGAAATAGCAACTATATTG+GGG + chr2_1:77141466-77141485 None:intergenic 25.0%
! ACATTGTACTAAATAGCATA+TGG - chr2_1:77141489-77141508 Msa0226620:intron 25.0%
! GACAAGACTTCATATTATAT+AGG - chr2_1:77141578-77141597 Msa0226620:intron 25.0%
!!! ATTTTTTGTTTGTTTAGGGA+AGG - chr2_1:77141636-77141655 Msa0226620:intron 25.0%
! GACAATATGAAAAATGAAAC+AGG + chr2_1:77141983-77142002 None:intergenic 25.0%
! TTCATTATTTCAGTTGCAAA+TGG - chr2_1:77142025-77142044 Msa0226620:intron 25.0%
! AAAGACAATGAGAATTAGAT+TGG - chr2_1:77142366-77142385 Msa0226620:intron 25.0%
! TTTGGAGGTAAAAAAATGTT+TGG + chr2_1:77142414-77142433 None:intergenic 25.0%
! TTTGAAGAATGATAATTTGG+AGG + chr2_1:77142429-77142448 None:intergenic 25.0%
!! TACAAAACTGATTATTGACT+TGG - chr2_1:77142580-77142599 Msa0226620:intron 25.0%
!!! TGATTATTGACTTGGAATTT+GGG - chr2_1:77142588-77142607 Msa0226620:intron 25.0%
!! ATATAGGTATTGTAGATTGA+TGG + chr2_1:77142627-77142646 None:intergenic 25.0%
!! TACGTAAAGATGTTTTATGA+AGG - chr2_1:77142968-77142987 Msa0226620:intron 25.0%
!! TAAAGATGTTTTATGAAGGT+TGG - chr2_1:77142972-77142991 Msa0226620:intron 25.0%
! TTGAAGTTTCCAAAGTTTAA+AGG - chr2_1:77142936-77142955 Msa0226620:intron 25.0%
!! CACATTTTTCCTTTAAACTT+TGG + chr2_1:77143080-77143099 None:intergenic 25.0%
! TGCTTAAAGATGTATTATGA+AGG - chr2_1:77143098-77143117 Msa0226620:intron 25.0%
! ATTATAAGTATTAGACAACG+TGG + chr2_1:77143174-77143193 None:intergenic 25.0%
! GTTATAGTAAGACTTAACAA+CGG + chr2_1:77143252-77143271 None:intergenic 25.0%
! TTAAGTCTTACTATAACAGA+AGG - chr2_1:77143255-77143274 Msa0226620:intron 25.0%
!!! AACTTGTTTTTTTAATGCAG+AGG - chr2_1:77143403-77143422 Msa0226620:intron 25.0%
! ATTTAACTCCAAATTGATCT+TGG + chr2_1:77143548-77143567 None:intergenic 25.0%
!!! TGTCAAAACACAGATTTTTT+AGG + chr2_1:77143663-77143682 None:intergenic 25.0%
! TTATCTGACAATTGATTGTT+TGG - chr2_1:77143734-77143753 Msa0226620:intron 25.0%
! AAGGATCTTATAATTAGGAA+TGG + chr2_1:77143802-77143821 None:intergenic 25.0%
! GTCAAAAGGATCTTATAATT+AGG + chr2_1:77143807-77143826 None:intergenic 25.0%
! GGACTAATAAAATTGTCAAA+AGG + chr2_1:77143821-77143840 None:intergenic 25.0%
! TAAAGTAACTCTTTCTCATA+TGG - chr2_1:77143956-77143975 Msa0226620:intron 25.0%
! AAAGTAACTCTTTCTCATAT+GGG - chr2_1:77143957-77143976 Msa0226620:intron 25.0%
! ATTACGGGAATTAAGAAAAT+TGG + chr2_1:77144031-77144050 None:intergenic 25.0%
!! TTTTCTTAATTCCCGTAATT+TGG - chr2_1:77144032-77144051 Msa0226620:intron 25.0%
!!! TAACTCGTCAATTATTTTAG+AGG + chr2_1:77144223-77144242 None:intergenic 25.0%
!! AGTTAGAGAAATGAATGTTT+TGG - chr2_1:77144238-77144257 Msa0226620:intron 25.0%
! TGTTTGATATAAAGAAACCA+CGG - chr2_1:77144404-77144423 Msa0226620:intron 25.0%
!!! GTGGTGCTAATTAATTTTTT+TGG - chr2_1:77144616-77144635 Msa0226620:intron 25.0%
! TTTGGAAAATTTATTCCTGA+AGG + chr2_1:77144717-77144736 None:intergenic 25.0%
! TTAAATTAAGAGGGAAACTT+TGG - chr2_1:77145238-77145257 Msa0226620:five_prime_UTR 25.0%
AGAATGAGATGAAGAAGTTA+GGG + chr2_1:77140739-77140758 None:intergenic 30.0%
CTTGTAAGATTTGTCAATCA+TGG - chr2_1:77141263-77141282 Msa0226620:intron 30.0%
TTGGGGTGAATAAAAAGATT+TGG - chr2_1:77141358-77141377 Msa0226620:intron 30.0%
TTCCAAAACTATAGTAATGG+AGG - chr2_1:77141406-77141425 Msa0226620:intron 30.0%
! TTCCTCCATTACTATAGTTT+TGG + chr2_1:77141411-77141430 None:intergenic 30.0%
! TATAGTAATGGAGGAAATGT+AGG - chr2_1:77141415-77141434 Msa0226620:intron 30.0%
GAAATGTAGGCAATAGAAAA+TGG - chr2_1:77141428-77141447 Msa0226620:intron 30.0%
TTGTACTAAATAGCATATGG+TGG - chr2_1:77141492-77141511 Msa0226620:intron 30.0%
ACAATTATATATGCAAGCTG+AGG - chr2_1:77141729-77141748 Msa0226620:intron 30.0%
TTGGCAAAACTAATGTTGTT+TGG - chr2_1:77141897-77141916 Msa0226620:intron 30.0%
! CAGTGCTTCTGTTAATTTTA+TGG + chr2_1:77142497-77142516 None:intergenic 30.0%
AAATTGCAAAGACATGTAGA+AGG - chr2_1:77142550-77142569 Msa0226620:intron 30.0%
!! CTGATTATTGACTTGGAATT+TGG - chr2_1:77142587-77142606 Msa0226620:intron 30.0%
GCTTCTGTATCGAATTATAT+AGG + chr2_1:77142643-77142662 None:intergenic 30.0%
TGCTTACATTGGATATTCTT+TGG - chr2_1:77142754-77142773 Msa0226620:intron 30.0%
TGAGGATATTGGTAAATTGT+TGG - chr2_1:77142786-77142805 Msa0226620:intron 30.0%
TACTATAACAGAAGGATTGT+TGG - chr2_1:77143263-77143282 Msa0226620:intron 30.0%
ACAGATTCATAAAGAAAGAC+AGG + chr2_1:77143319-77143338 None:intergenic 30.0%
TGGTGATAAGTACTAGAATT+TGG - chr2_1:77143359-77143378 Msa0226620:intron 30.0%
GATCTTATAATTAGGAATGG+AGG + chr2_1:77143799-77143818 None:intergenic 30.0%
CCAAAGAGATCTTATGAAAA+GGG + chr2_1:77143842-77143861 None:intergenic 30.0%
ACCAAAGAGATCTTATGAAA+AGG + chr2_1:77143843-77143862 None:intergenic 30.0%
ATATATGTCACTGTCATAGA+GGG + chr2_1:77144124-77144143 None:intergenic 30.0%
TATATATGTCACTGTCATAG+AGG + chr2_1:77144125-77144144 None:intergenic 30.0%
ACAAAACATAAGCTCAGATA+TGG + chr2_1:77144387-77144406 None:intergenic 30.0%
ATACAGATGACCATTTCAAA+TGG - chr2_1:77144538-77144557 Msa0226620:intron 30.0%
TACAGATGACCATTTCAAAT+GGG - chr2_1:77144539-77144558 Msa0226620:intron 30.0%
!!! TTTTGCATTACAGCTTTAAG+TGG - chr2_1:77144597-77144616 Msa0226620:intron 30.0%
GGAATGTAAAACAATCTCTT+TGG + chr2_1:77144735-77144754 None:intergenic 30.0%
TTCTGTGATTATTTAGACAC+AGG - chr2_1:77144824-77144843 Msa0226620:CDS 30.0%
TCTGTGATTATTTAGACACA+GGG - chr2_1:77144825-77144844 Msa0226620:CDS 30.0%
ATTAAGCTACAAATCCTGTT+AGG - chr2_1:77144858-77144877 Msa0226620:intron 30.0%
TAGCGTTGCTATCAATTATT+AGG + chr2_1:77144901-77144920 None:intergenic 30.0%
TAGTCCTTAGAATTCAAACA+TGG - chr2_1:77145061-77145080 Msa0226620:five_prime_UTR 30.0%
AGTCCTTAGAATTCAAACAT+GGG - chr2_1:77145062-77145081 Msa0226620:five_prime_UTR 30.0%
TTCAACACAAAAACATCAGT+TGG + chr2_1:77145119-77145138 None:intergenic 30.0%
TAAATCAAACCCCCATTTGA+TGG + chr2_1:77140474-77140493 None:intergenic 35.0%
! CAAATGGGGGTTTGATTTAT+TGG - chr2_1:77140475-77140494 Msa0226620:three_prime_UTR 35.0%
GTTTGATTGGAAATGGAAGA+AGG + chr2_1:77140645-77140664 None:intergenic 35.0%
! ATGATGGTGTTTGAGATCTA+CGG + chr2_1:77140681-77140700 None:intergenic 35.0%
! ATGAAGAAGTTAGGGTTTTG+AGG + chr2_1:77140731-77140750 None:intergenic 35.0%
GAGAATGAGATGAAGAAGTT+AGG + chr2_1:77140740-77140759 None:intergenic 35.0%
GGCATAGGAAATTGACAAAA+TGG + chr2_1:77141167-77141186 None:intergenic 35.0%
ATAAGAGTAGTTCGGATTCA+AGG + chr2_1:77141188-77141207 None:intergenic 35.0%
GATTTGTCAATCATGGATAG+CGG - chr2_1:77141270-77141289 Msa0226620:intron 35.0%
ATAGCAACTATATTGGGGTT+AGG + chr2_1:77141461-77141480 None:intergenic 35.0%
CAACTAATTCACACACACAT+AGG + chr2_1:77141799-77141818 None:intergenic 35.0%
! GTGTGAATTAGTTGTTTCCA+AGG - chr2_1:77141805-77141824 Msa0226620:intron 35.0%
!! TTCCAAGGTTGATTTTGATG+TGG - chr2_1:77141820-77141839 Msa0226620:intron 35.0%
!! TCCAAGGTTGATTTTGATGT+GGG - chr2_1:77141821-77141840 Msa0226620:intron 35.0%
TAAGAAAGACCCAGAGATTA+AGG - chr2_1:77142170-77142189 Msa0226620:intron 35.0%
CAATCAACTCCTTAATCTCT+GGG + chr2_1:77142182-77142201 None:intergenic 35.0%
TCAATCAACTCCTTAATCTC+TGG + chr2_1:77142183-77142202 None:intergenic 35.0%
GATCTTATAATACCATCCCT+AGG + chr2_1:77142345-77142364 None:intergenic 35.0%
! ATTCTTTGGAAGTAAGCATG+AGG - chr2_1:77142768-77142787 Msa0226620:intron 35.0%
CTTATCACCAGATTGTGAAA+AGG + chr2_1:77143349-77143368 None:intergenic 35.0%
ACTGGTTACCAAGATCAATT+TGG - chr2_1:77143537-77143556 Msa0226620:intron 35.0%
ATTATTGCCCTCAACTTTCA+CGG - chr2_1:77143616-77143635 Msa0226620:intron 35.0%
GTATACATTAAACAGCGACA+AGG + chr2_1:77143774-77143793 None:intergenic 35.0%
! CCCTTTTCATAAGATCTCTT+TGG - chr2_1:77143839-77143858 Msa0226620:intron 35.0%
!!! GAAATGAATGTTTTGGCACT+AGG - chr2_1:77144245-77144264 Msa0226620:intron 35.0%
!!! TCTGCACAAATTTTGGCTAA+AGG + chr2_1:77144315-77144334 None:intergenic 35.0%
CATGCATAAAATTCCTCCAT+GGG - chr2_1:77144453-77144472 Msa0226620:intron 35.0%
ATGCATAAAATTCCTCCATG+GGG - chr2_1:77144454-77144473 Msa0226620:intron 35.0%
! AGTAAAGCACCCATTTGAAA+TGG + chr2_1:77144551-77144570 None:intergenic 35.0%
! CATTGCAACGTGATTTTGAA+AGG + chr2_1:77144760-77144779 None:intergenic 35.0%
!!! ATGCTTTGTTTGGTTTTGAC+TGG - chr2_1:77144777-77144796 Msa0226620:CDS 35.0%
!!! TCCTGTTAGGTTGTCATTTT+TGG - chr2_1:77144871-77144890 Msa0226620:intron 35.0%
ACCAAAAATGACAACCTAAC+AGG + chr2_1:77144875-77144894 None:intergenic 35.0%
! TTTTAGCACCTATCCACAAA+AGG - chr2_1:77144973-77144992 Msa0226620:CDS 35.0%
TTTAGCACCTATCCACAAAA+GGG - chr2_1:77144974-77144993 Msa0226620:CDS 35.0%
! TAAACTTGTAGTCCCTTTTG+TGG + chr2_1:77144989-77145008 None:intergenic 35.0%
! TTTCACCTAATGGATCAAAG+CGG + chr2_1:77145027-77145046 None:intergenic 35.0%
!!! TTGACTGCTTTTTCACCTAA+TGG + chr2_1:77145037-77145056 None:intergenic 35.0%
TGTCCCATGTTTGAATTCTA+AGG + chr2_1:77145068-77145087 None:intergenic 35.0%
AACACAAAAACATCAGTTGG+TGG + chr2_1:77145116-77145135 None:intergenic 35.0%
TGAAAAATGTGGAGACAATC+TGG - chr2_1:77145202-77145221 Msa0226620:five_prime_UTR 35.0%
! GGAAACTTTGGTTCCTTAAT+CGG - chr2_1:77145250-77145269 Msa0226620:five_prime_UTR 35.0%
! TTTGAGATCTACGGTGGTTA+CGG + chr2_1:77140672-77140691 None:intergenic 40.0%
AGATCTCAAACACCATCATG+TGG - chr2_1:77140682-77140701 Msa0226620:three_prime_UTR 40.0%
AGTGAAGATACCTGATTGTG+TGG + chr2_1:77140817-77140836 None:intergenic 40.0%
! GATTTGGTTGTGATTGTAGC+TGG - chr2_1:77140885-77140904 Msa0226620:three_prime_UTR 40.0%
GATGTAGTTCCAATTGCTAC+CGG - chr2_1:77140930-77140949 Msa0226620:three_prime_UTR 40.0%
GAAAACCACTATAGCGAGTT+AGG - chr2_1:77141292-77141311 Msa0226620:intron 40.0%
AGTATCCTAACTCGCTATAG+TGG + chr2_1:77141300-77141319 None:intergenic 40.0%
GTAGGCAATAGAAAATGGAG+AGG - chr2_1:77141433-77141452 Msa0226620:intron 40.0%
! AGCATATGGTGGAGCAATAA+TGG - chr2_1:77141503-77141522 Msa0226620:intron 40.0%
! GTGGAGCAATAATGGTTTGT+TGG - chr2_1:77141511-77141530 Msa0226620:intron 40.0%
CTATAAGCGCTATACCTCTA+TGG + chr2_1:77141549-77141568 None:intergenic 40.0%
TTACTAACCTTCGTGCCAAA+AGG + chr2_1:77141692-77141711 None:intergenic 40.0%
ACCCACATCAAAATCAACCT+TGG + chr2_1:77141825-77141844 None:intergenic 40.0%
!! GTTGATTTTGATGTGGGTTG+CGG - chr2_1:77141827-77141846 Msa0226620:intron 40.0%
! GGCTTGGTTGTTGTTGTATA+CGG - chr2_1:77142271-77142290 Msa0226620:CDS 40.0%
GTTATAACTCAGTGAAGGGT+AGG + chr2_1:77142312-77142331 None:intergenic 40.0%
! GGGTGTTATAACTCAGTGAA+GGG + chr2_1:77142316-77142335 None:intergenic 40.0%
! TGGGTGTTATAACTCAGTGA+AGG + chr2_1:77142317-77142336 None:intergenic 40.0%
TTATAACACCCAAGTCTCCT+AGG - chr2_1:77142325-77142344 Msa0226620:intron 40.0%
TATAACACCCAAGTCTCCTA+GGG - chr2_1:77142326-77142345 Msa0226620:intron 40.0%
TCGATACAGAAGCAATCTTC+TGG - chr2_1:77142650-77142669 Msa0226620:intron 40.0%
GGATGCTAAGTTGCTTACAT+TGG - chr2_1:77142743-77142762 Msa0226620:intron 40.0%
GGAAGTAAGCATGAGGATAT+TGG - chr2_1:77142775-77142794 Msa0226620:intron 40.0%
!! GAGGATAGCAACTTGTTAAC+AGG + chr2_1:77142813-77142832 None:intergenic 40.0%
CTCAATTACTTCACCGTACT+CGG - chr2_1:77142830-77142849 Msa0226620:intron 40.0%
TAACCATGGCTGGAAAATCA+AGG - chr2_1:77143002-77143021 Msa0226620:intron 40.0%
AACCATGGCTGGAAAATCAA+GGG - chr2_1:77143003-77143022 Msa0226620:intron 40.0%
TGTCTGCTTTCGCTGTTTAT+AGG - chr2_1:77143217-77143236 Msa0226620:intron 40.0%
TAGTAAGACTTAACAACGGC+AGG + chr2_1:77143248-77143267 None:intergenic 40.0%
! GTGCAAACCTTTTCACAATC+TGG - chr2_1:77143339-77143358 Msa0226620:intron 40.0%
!! AGCATGATGTTGTCTGGTTT+TGG - chr2_1:77143429-77143448 Msa0226620:intron 40.0%
TGAAAATACTGTGCACACAC+TGG + chr2_1:77143482-77143501 None:intergenic 40.0%
! AGTGTGTGCACAGTATTTTC+AGG - chr2_1:77143481-77143500 Msa0226620:intron 40.0%
ATGAAGTCCGTGAAAGTTGA+GGG + chr2_1:77143626-77143645 None:intergenic 40.0%
TATGAAGTCCGTGAAAGTTG+AGG + chr2_1:77143627-77143646 None:intergenic 40.0%
TCAACTTTCACGGACTTCAT+AGG - chr2_1:77143626-77143645 Msa0226620:intron 40.0%
ATTCCCGTAATTTGGCCAAA+AGG - chr2_1:77144040-77144059 Msa0226620:intron 40.0%
TTCCCGTAATTTGGCCAAAA+GGG - chr2_1:77144041-77144060 Msa0226620:intron 40.0%
GCATTCATAAGTGATGACAC+TGG + chr2_1:77144358-77144377 None:intergenic 40.0%
GCATGCATAAAATTCCTCCA+TGG - chr2_1:77144452-77144471 Msa0226620:intron 40.0%
AACTATTCTTATCCCCATGG+AGG + chr2_1:77144469-77144488 None:intergenic 40.0%
TCCATGGGGATAAGAATAGT+TGG - chr2_1:77144468-77144487 Msa0226620:intron 40.0%
TCCAACTATTCTTATCCCCA+TGG + chr2_1:77144472-77144491 None:intergenic 40.0%
TCTGATCAATGGTGTCCATA+AGG + chr2_1:77144682-77144701 None:intergenic 40.0%
AAACTGCAGCATCTGATCAA+TGG + chr2_1:77144693-77144712 None:intergenic 40.0%
!! GCAACGTGATTTTGAAAGGT+AGG + chr2_1:77144756-77144775 None:intergenic 40.0%
! TCACGTTGCAATGCTTTGTT+TGG - chr2_1:77144767-77144786 Msa0226620:CDS 40.0%
GTGATTATTTAGACACAGGG+TGG - chr2_1:77144828-77144847 Msa0226620:CDS 40.0%
! TTGTAGTCCCTTTTGTGGAT+AGG + chr2_1:77144984-77145003 None:intergenic 40.0%
!! AAACATCAGTTGGTGGATGA+AGG + chr2_1:77145109-77145128 None:intergenic 40.0%
AGTCAAGTCACAACAGTAAC+TGG + chr2_1:77145151-77145170 None:intergenic 40.0%
TACTGTTGTGACTTGACTGT+TGG - chr2_1:77145153-77145172 Msa0226620:five_prime_UTR 40.0%
CAAACGAATTAGCACGTGAC+GGG + chr2_1:77140514-77140533 None:intergenic 45.0%
CCAAACGAATTAGCACGTGA+CGG + chr2_1:77140515-77140534 None:intergenic 45.0%
CGTCACGTGCTAATTCGTTT+GGG - chr2_1:77140513-77140532 Msa0226620:three_prime_UTR 45.0%
! CGCGCTCAAGTTTAACTTCA+AGG + chr2_1:77140539-77140558 None:intergenic 45.0%
! ATGGTGTTTGAGATCTACGG+TGG + chr2_1:77140678-77140697 None:intergenic 45.0%
TCTCAAACACCATCATGTGG+CGG - chr2_1:77140685-77140704 Msa0226620:three_prime_UTR 45.0%
!!! GAAGTTAGGGTTTTGAGGTG+AGG + chr2_1:77140726-77140745 None:intergenic 45.0%
GGTTGTGATTGTAGCTGGTT+CGG - chr2_1:77140890-77140909 Msa0226620:three_prime_UTR 45.0%
TTCGGTGAAGAAGACAGTTG+AGG - chr2_1:77140908-77140927 Msa0226620:three_prime_UTR 45.0%
AATCTCCTCACGTTCATGAC+CGG + chr2_1:77140952-77140971 None:intergenic 45.0%
GGAGATTCAAGCTGATCTTG+AGG - chr2_1:77140965-77140984 Msa0226620:three_prime_UTR 45.0%
GTAGTTCGGATTCAAGGCAT+AGG + chr2_1:77141182-77141201 None:intergenic 45.0%
GGAATTCTGCTACACCATAG+AGG - chr2_1:77141532-77141551 Msa0226620:intron 45.0%
CTTCAGGGTGGTCTATTTCA+AGG + chr2_1:77141667-77141686 None:intergenic 45.0%
CTTGAAATAGACCACCCTGA+AGG - chr2_1:77141665-77141684 Msa0226620:intron 45.0%
!! TTTTGATGTGGGTTGCGGAA+TGG - chr2_1:77141832-77141851 Msa0226620:intron 45.0%
AACAGGGACTCATACCCTTT+AGG + chr2_1:77141966-77141985 None:intergenic 45.0%
! GGTTGGCTACATGGATCAAA+CGG + chr2_1:77142235-77142254 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGCA+GGG + chr2_1:77142256-77142275 None:intergenic 45.0%
AAGGGTAGGTAGGAAGACTA+GGG + chr2_1:77142298-77142317 None:intergenic 45.0%
TAACTCAGTGAAGGGTAGGT+AGG + chr2_1:77142308-77142327 None:intergenic 45.0%
ATACCATCCCTAGGAGACTT+GGG + chr2_1:77142336-77142355 None:intergenic 45.0%
AATACCATCCCTAGGAGACT+TGG + chr2_1:77142337-77142356 None:intergenic 45.0%
TGCAAAGACATGTAGAAGGC+TGG - chr2_1:77142554-77142573 Msa0226620:intron 45.0%
CGAGTACGGTGAAGTAATTG+AGG + chr2_1:77142832-77142851 None:intergenic 45.0%
TCACCTCTTACAACCGAGTA+CGG + chr2_1:77142846-77142865 None:intergenic 45.0%
TAAGAGGTGAAGAGTAACCG+TGG - chr2_1:77142856-77142875 Msa0226620:intron 45.0%
AACCGTGGCTGGAAAATCAA+AGG - chr2_1:77142871-77142890 Msa0226620:intron 45.0%
ACCGTGGCTGGAAAATCAAA+GGG - chr2_1:77142872-77142891 Msa0226620:intron 45.0%
!! ACCCTTTGATTTTCCAGCCA+CGG + chr2_1:77142876-77142895 None:intergenic 45.0%
!! AGGTTGGTGAAGAGTAACCA+TGG - chr2_1:77142988-77143007 Msa0226620:intron 45.0%
ACCATGGCTGGAAAATCAAG+GGG - chr2_1:77143004-77143023 Msa0226620:intron 45.0%
AGGATGAGCATGATGTTGTC+TGG - chr2_1:77143423-77143442 Msa0226620:intron 45.0%
!!! TGATGTTGTCTGGTTTTGGC+TGG - chr2_1:77143433-77143452 Msa0226620:intron 45.0%
TGCACACACTGGACATTCAT+GGG + chr2_1:77143471-77143490 None:intergenic 45.0%
! GACCCTTTTGGCCAAATTAC+GGG + chr2_1:77144046-77144065 None:intergenic 45.0%
! GGACCCTTTTGGCCAAATTA+CGG + chr2_1:77144047-77144066 None:intergenic 45.0%
GCCAAAAGGGTCCTATAGTT+GGG - chr2_1:77144054-77144073 Msa0226620:CDS 45.0%
CCAAAAGGGTCCTATAGTTG+GGG - chr2_1:77144055-77144074 Msa0226620:CDS 45.0%
CTACATCGATCCCCAACTAT+AGG + chr2_1:77144068-77144087 None:intergenic 45.0%
TTCTGCGTTACAGCTTGAAG+TGG - chr2_1:77144639-77144658 Msa0226620:intron 45.0%
! AGATGCTGCAGTTTTCCTTC+AGG - chr2_1:77144699-77144718 Msa0226620:intron 45.0%
!! TTTGACTGGTCTAGACCTTG+CGG - chr2_1:77144791-77144810 Msa0226620:CDS 45.0%
TAGGTGCTAAAAGTAGCTGC+AGG + chr2_1:77144965-77144984 None:intergenic 45.0%
CAAGTCACAACAGTAACTGG+TGG + chr2_1:77145148-77145167 None:intergenic 45.0%
GTTGTGACTTGACTGTTGGT+TGG - chr2_1:77145157-77145176 Msa0226620:five_prime_UTR 45.0%
GGGCACTCAAAATCCGATTA+AGG + chr2_1:77145266-77145285 None:intergenic 45.0%
!! CAAACCCCCATTTGATGGTG+AGG + chr2_1:77140469-77140488 None:intergenic 50.0%
CCGTCACGTGCTAATTCGTT+TGG - chr2_1:77140512-77140531 Msa0226620:three_prime_UTR 50.0%
CGGCGTCGTTTGATTGGAAA+TGG + chr2_1:77140652-77140671 None:intergenic 50.0%
TGGTTACGGCGTCGTTTGAT+TGG + chr2_1:77140658-77140677 None:intergenic 50.0%
AACGATTCTCCGCCACATGA+TGG + chr2_1:77140697-77140716 None:intergenic 50.0%
CGTTCATGACCGGTAGCAAT+TGG + chr2_1:77140942-77140961 None:intergenic 50.0%
TCGTGCCAAAAGGACCTTCA+GGG + chr2_1:77141682-77141701 None:intergenic 50.0%
TTCGTGCCAAAAGGACCTTC+AGG + chr2_1:77141683-77141702 None:intergenic 50.0%
! TGAAGGTCCTTTTGGCACGA+AGG - chr2_1:77141682-77141701 Msa0226620:intron 50.0%
!! TGTGGGTTGCGGAATGGTTT+TGG - chr2_1:77141838-77141857 Msa0226620:intron 50.0%
!! ACTAAGCAGGGTTGGCTACA+TGG + chr2_1:77142244-77142263 None:intergenic 50.0%
ATGTAGCCAACCCTGCTTAG+TGG - chr2_1:77142243-77142262 Msa0226620:intron 50.0%
TGTAGCCAACCCTGCTTAGT+GGG - chr2_1:77142244-77142263 Msa0226620:intron 50.0%
CTTATCCCACTAAGCAGGGT+TGG + chr2_1:77142252-77142271 None:intergenic 50.0%
CAACCCTGCTTAGTGGGATA+AGG - chr2_1:77142250-77142269 Msa0226620:CDS 50.0%
! CAAGCCTTATCCCACTAAGC+AGG + chr2_1:77142257-77142276 None:intergenic 50.0%
CTGCTTAGTGGGATAAGGCT+TGG - chr2_1:77142255-77142274 Msa0226620:CDS 50.0%
GAAGGGTAGGTAGGAAGACT+AGG + chr2_1:77142299-77142318 None:intergenic 50.0%
TCACCGTACTCGGTTGTAAG+AGG - chr2_1:77142840-77142859 Msa0226620:intron 50.0%
TGGTGAAGAGTAACCATGGC+TGG - chr2_1:77142992-77143011 Msa0226620:intron 50.0%
! ACCCCTTGATTTTCCAGCCA+TGG + chr2_1:77143008-77143027 None:intergenic 50.0%
AGAAGGATTGTTGGATGCCC+CGG - chr2_1:77143272-77143291 Msa0226620:intron 50.0%
!!! TGTTGTCTGGTTTTGGCTGG+AGG - chr2_1:77143436-77143455 Msa0226620:intron 50.0%
GCACACACTGGACATTCATG+GGG + chr2_1:77143470-77143489 None:intergenic 50.0%
GTGCACACACTGGACATTCA+TGG + chr2_1:77143472-77143491 None:intergenic 50.0%
GGCCAAAAGGGTCCTATAGT+TGG - chr2_1:77144053-77144072 Msa0226620:CDS 50.0%
! CCCCAACTATAGGACCCTTT+TGG + chr2_1:77144058-77144077 None:intergenic 50.0%
TGTCAGCATACACTACACCG+TGG + chr2_1:77144424-77144443 None:intergenic 50.0%
TGCGTTACAGCTTGAAGTGG+TGG - chr2_1:77144642-77144661 Msa0226620:intron 50.0%
GCGTTACAGCTTGAAGTGGT+GGG - chr2_1:77144643-77144662 Msa0226620:intron 50.0%
CAGAAACTCTCTGAACCGCA+AGG + chr2_1:77144809-77144828 None:intergenic 50.0%
AGCCTCCGCTTTGATCCATT+AGG - chr2_1:77145019-77145038 Msa0226620:CDS 50.0%
! CACCTAATGGATCAAAGCGG+AGG + chr2_1:77145024-77145043 None:intergenic 50.0%
!! AGTTGGTGGATGAAGGTCGA+CGG + chr2_1:77145102-77145121 None:intergenic 50.0%
TACCTGATTGTGTGGCGACG+TGG + chr2_1:77140809-77140828 None:intergenic 55.0%
TGCTACCGGTCATGAACGTG+AGG - chr2_1:77140944-77140963 Msa0226620:three_prime_UTR 55.0%
! GACCACCCTGAAGGTCCTTT+TGG - chr2_1:77141674-77141693 Msa0226620:intron 55.0%
TGCCAAAAGGACCTTCAGGG+TGG + chr2_1:77141679-77141698 None:intergenic 55.0%
ACACCCAAGTCTCCTAGGGA+TGG - chr2_1:77142330-77142349 Msa0226620:intron 55.0%
AGGTGAAGAGTAACCGTGGC+TGG - chr2_1:77142860-77142879 Msa0226620:intron 55.0%
ACACTTACCACCCTCACCAC+CGG + chr2_1:77143294-77143313 None:intergenic 55.0%
!!! GTCTGGTTTTGGCTGGAGGA+AGG - chr2_1:77143440-77143459 Msa0226620:intron 55.0%
TGTCCATAAGGATCACCGCC+AGG + chr2_1:77144670-77144689 None:intergenic 55.0%
CTGATTGTGTGGCGACGTGG+CGG + chr2_1:77140806-77140825 None:intergenic 60.0%
AGGATTGTTGGATGCCCCGG+TGG - chr2_1:77143275-77143294 Msa0226620:intron 60.0%
ACTTACCACCCTCACCACCG+GGG + chr2_1:77143292-77143311 None:intergenic 60.0%
CACTTACCACCCTCACCACC+GGG + chr2_1:77143293-77143312 None:intergenic 60.0%
! CAGCTTGAAGTGGTGGGACC+TGG - chr2_1:77144649-77144668 Msa0226620:intron 60.0%
! CTTGAAGTGGTGGGACCTGG+CGG - chr2_1:77144652-77144671 Msa0226620:intron 60.0%
GGACCTGGCGGTGATCCTTA+TGG - chr2_1:77144664-77144683 Msa0226620:intron 60.0%
GGTGGATGAAGGTCGACGGA+GGG + chr2_1:77145098-77145117 None:intergenic 60.0%
! TGGTGGATGAAGGTCGACGG+AGG + chr2_1:77145099-77145118 None:intergenic 60.0%
CGCCACGTCGCCACACAATC+AGG - chr2_1:77140804-77140823 Msa0226620:three_prime_UTR 65.0%
TGTTGGATGCCCCGGTGGTG+AGG - chr2_1:77143280-77143299 Msa0226620:intron 65.0%
GTTGGATGCCCCGGTGGTGA+GGG - chr2_1:77143281-77143300 Msa0226620:intron 65.0%
CATCCTCGATCCGCCGTCGC+CGG - chr2_1:77140759-77140778 Msa0226620:three_prime_UTR 70.0%
GAATCGGAGACCGGCGACGG+CGG + chr2_1:77140772-77140791 None:intergenic 70.0%
GGCGAATCGGAGACCGGCGA+CGG + chr2_1:77140775-77140794 None:intergenic 70.0%
! GTCGCCGGTCTCCGATTCGC+CGG - chr2_1:77140774-77140793 Msa0226620:three_prime_UTR 70.0%
GAGGCCGGCGAATCGGAGAC+CGG + chr2_1:77140781-77140800 None:intergenic 70.0%
AGACCGGCGACGGCGGATCG+AGG + chr2_1:77140765-77140784 None:intergenic 75.0%
GGCGGCTGAGGCCGGCGAAT+CGG + chr2_1:77140788-77140807 None:intergenic 75.0%
GTGTGGCGACGTGGCGGCTG+AGG + chr2_1:77140800-77140819 None:intergenic 75.0%
GGATGCCCCGGTGGTGAGGG+TGG - chr2_1:77143284-77143303 Msa0226620:intron 75.0%
! GGCGACGTGGCGGCTGAGGC+CGG + chr2_1:77140796-77140815 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 77140464 77145288 77140464 ID=Msa0226620;Name=Msa0226620
chr2_1 mRNA 77140464 77145288 77140464 ID=Msa0226620-mRNA-1;Parent=Msa0226620;Name=Msa0226620-mRNA-1;_AED=0.07;_eAED=0.07;_QI=235|1|1|1|1|1|6|592|150
chr2_1 exon 77140464 77141100 77140464 ID=Msa0226620-mRNA-1:exon:23393;Parent=Msa0226620-mRNA-1
chr2_1 exon 77142250 77142329 77142250 ID=Msa0226620-mRNA-1:exon:23392;Parent=Msa0226620-mRNA-1
chr2_1 exon 77142447 77142513 77142447 ID=Msa0226620-mRNA-1:exon:23391;Parent=Msa0226620-mRNA-1
chr2_1 exon 77144049 77144099 77144049 ID=Msa0226620-mRNA-1:exon:23390;Parent=Msa0226620-mRNA-1
chr2_1 exon 77144766 77144848 77144766 ID=Msa0226620-mRNA-1:exon:23389;Parent=Msa0226620-mRNA-1
chr2_1 exon 77144927 77145288 77144927 ID=Msa0226620-mRNA-1:exon:23388;Parent=Msa0226620-mRNA-1
chr2_1 five_prime_UTR 77145054 77145288 77145054 ID=Msa0226620-mRNA-1:five_prime_utr;Parent=Msa0226620-mRNA-1
chr2_1 CDS 77144927 77145053 77144927 ID=Msa0226620-mRNA-1:cds;Parent=Msa0226620-mRNA-1
chr2_1 CDS 77144766 77144848 77144766 ID=Msa0226620-mRNA-1:cds;Parent=Msa0226620-mRNA-1
chr2_1 CDS 77144049 77144099 77144049 ID=Msa0226620-mRNA-1:cds;Parent=Msa0226620-mRNA-1
chr2_1 CDS 77142447 77142513 77142447 ID=Msa0226620-mRNA-1:cds;Parent=Msa0226620-mRNA-1
chr2_1 CDS 77142250 77142329 77142250 ID=Msa0226620-mRNA-1:cds;Parent=Msa0226620-mRNA-1
chr2_1 CDS 77141056 77141100 77141056 ID=Msa0226620-mRNA-1:cds;Parent=Msa0226620-mRNA-1
chr2_1 three_prime_UTR 77140464 77141055 77140464 ID=Msa0226620-mRNA-1:three_prime_utr;Parent=Msa0226620-mRNA-1
Gene Sequence

>Msa0226620

ATGTGGCGGAGAATCGTTTCTTCTCCTCACCTCAAAACCCTAACTTCTTCATCTCATTCTCATCCTCGATCCGCCGTCGCCGGTCTCCGATTCGCCGGCCTCAGCCGCCACGTCGCCACACAATCAGCTGGTTCGGTGAAGAAGACAGTTGAGGATGTAGTTCCAATTGCTACCGGTCATGAACGTGAGGAGATTCAAGCTGATCTTGAGGGAAGGAATATCCTTGAAATAGACCACCCTGAAGGTCCTTTTGGCACGAAGGAAGCACCTGCCGTTGTTAAGTCTTACTATAACAGAAGGATTGTTGGATGCCCCGGTGGTGAGGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGGAAGGCAAGCCCCATGAATGTCCAGTGTGTGCACAGTATTTTCAGCTTGAAGTGGTGGGACCTGGCGGTGATCCTTATGGACACCATTGA
Protein sequence

>Msa0226620

MWRRIVSSPHLKTLTSSSHSHPRSAVAGLRFAGLSRHVATQSAGSVKKTVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGEGEDEHDVVWFWLEEGKPHECPVCAQYFQLEVVGPGGDPYGHH*