AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094940 MtrunA17_Chr2g0332571 99.333 150 1 0 1 150 1 150 2.48e-109 307
Msa0094940 MtrunA17_Chr4g0003811 75.325 154 28 4 1 149 1 149 2.48e-75 221
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094940 AT1G80230.1 61.392 158 42 3 1 140 1 157 5.64e-59 181
Msa0094940 AT3G15640.2 58.491 159 45 4 1 140 1 157 1.55e-52 164
Msa0094940 AT3G15640.1 57.862 159 47 3 1 140 1 158 1.04e-51 162
Msa0094940 AT1G52710.1 59.302 86 35 0 65 150 4 89 2.01e-33 113

Find 108 sgRNAs with CRISPR-Local

Find 326 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCGTTGCTATCAATTATT+AGG 0.262008 1_2:+78361672 None:intergenic
AGCATGATGTTGTCTGGTTT+TGG 0.271011 1_2:-78363226 Msa0094940:CDS
GAGAATGAGATGAAGAAGTT+AGG 0.298612 1_2:+78365892 None:intergenic
TGTCCCATGTTTGAATTCTA+AGG 0.300229 1_2:+78361505 None:intergenic
GGAAACTTTGGTTCCTTAAT+CGG 0.319479 1_2:-78361322 Msa0094940:three_prime_UTR
CCGTCACGTGCTAATTCGTT+TGG 0.329404 1_2:-78366113 Msa0094940:five_prime_UTR
TCACGTTGCAATGCTTTGTT+TGG 0.352341 1_2:-78361803 Msa0094940:three_prime_UTR
GGAATGTAAAACAATCTCTT+TGG 0.352887 1_2:+78361838 None:intergenic
CGCGCTCAAGTTTAACTTCA+AGG 0.362659 1_2:+78366089 None:intergenic
ATTAAGCTACAAATCCTGTT+AGG 0.366895 1_2:-78361712 Msa0094940:three_prime_UTR
TTAAATTAAGAGGGAAACTT+TGG 0.368684 1_2:-78361334 Msa0094940:three_prime_UTR
GGGCACTCAAAATCCGATTA+AGG 0.369464 1_2:+78361309 None:intergenic
GACCACCCTGAAGGTCCTTT+TGG 0.374661 1_2:-78364956 Msa0094940:CDS
TTTGAGATCTACGGTGGTTA+CGG 0.386481 1_2:+78365960 None:intergenic
TTCGTGCCAAAAGGACCTTC+AGG 0.388454 1_2:+78364950 None:intergenic
AGTCAAGTCACAACAGTAAC+TGG 0.389318 1_2:+78361424 None:intergenic
CGGCGTCGTTTGATTGGAAA+TGG 0.390861 1_2:+78365980 None:intergenic
GGACCTGGCGGTGATCCTTA+TGG 0.392481 1_2:-78361906 Msa0094940:CDS
CGTCACGTGCTAATTCGTTT+GGG 0.403376 1_2:-78366112 Msa0094940:five_prime_UTR
CGTTCATGACCGGTAGCAAT+TGG 0.405824 1_2:+78365690 None:intergenic
TACTATAACAGAAGGATTGT+TGG 0.415818 1_2:-78363392 Msa0094940:CDS
GGCGACGTGGCGGCTGAGGC+CGG 0.418601 1_2:+78365836 None:intergenic
TATACACCCCACCATCAAAT+GGG 0.419953 1_2:-78366165 None:intergenic
CTATTTGAAATTAAATTAAG+AGG 0.427196 1_2:-78361344 Msa0094940:three_prime_UTR
AGAATGAGATGAAGAAGTTA+GGG 0.429164 1_2:+78365893 None:intergenic
TGCACACACTGGACATTCAT+GGG 0.432638 1_2:+78363187 None:intergenic
TGGTTACGGCGTCGTTTGAT+TGG 0.435570 1_2:+78365974 None:intergenic
GTGCACACACTGGACATTCA+TGG 0.436671 1_2:+78363186 None:intergenic
TGTTGGATGCCCCGGTGGTG+AGG 0.446924 1_2:-78363375 Msa0094940:CDS
CGCCACGTCGCCACACAATC+AGG 0.449393 1_2:-78365825 Msa0094940:intron
ATATACACCCCACCATCAAA+TGG 0.450852 1_2:-78366166 None:intergenic
CACTTACCACCCTCACCACC+GGG 0.453277 1_2:+78363365 None:intergenic
CTTCAGGGTGGTCTATTTCA+AGG 0.458207 1_2:+78364966 None:intergenic
GGCGGCTGAGGCCGGCGAAT+CGG 0.463992 1_2:+78365844 None:intergenic
ACACTTACCACCCTCACCAC+CGG 0.473884 1_2:+78363364 None:intergenic
GTTGTGACTTGACTGTTGGT+TGG 0.474792 1_2:-78361415 Msa0094940:three_prime_UTR
GTTGGATGCCCCGGTGGTGA+GGG 0.475405 1_2:-78363374 Msa0094940:CDS
TACTGTTGTGACTTGACTGT+TGG 0.480725 1_2:-78361419 Msa0094940:three_prime_UTR
TTTGGAAAATTTATTCCTGA+AGG 0.482002 1_2:+78361856 None:intergenic
GTGTGGCGACGTGGCGGCTG+AGG 0.482725 1_2:+78365832 None:intergenic
TCTGATCAATGGTGTCCATA+AGG 0.484112 1_2:+78361891 None:intergenic
TTACTAACCTTCGTGCCAAA+AGG 0.484133 1_2:+78364941 None:intergenic
CATCCTCGATCCGCCGTCGC+CGG 0.485063 1_2:-78365870 Msa0094940:CDS
AGCCTCCGCTTTGATCCATT+AGG 0.487703 1_2:-78361551 Msa0094940:three_prime_UTR
GGTTGTGATTGTAGCTGGTT+CGG 0.494202 1_2:-78365739 Msa0094940:intron
AGGATGAGCATGATGTTGTC+TGG 0.496376 1_2:-78363232 Msa0094940:CDS
GGCGAATCGGAGACCGGCGA+CGG 0.501941 1_2:+78365857 None:intergenic
CAGCTTGAAGTGGTGGGACC+TGG 0.505788 1_2:-78361921 Msa0094940:CDS
TGCGTTACAGCTTGAAGTGG+TGG 0.516079 1_2:-78361928 Msa0094940:intron
GTCGCCGGTCTCCGATTCGC+CGG 0.516296 1_2:-78365855 Msa0094940:CDS
TTCTGTGATTATTTAGACAC+AGG 0.517900 1_2:-78361746 Msa0094940:three_prime_UTR
TGAAAATACTGTGCACACAC+TGG 0.523295 1_2:+78363176 None:intergenic
AGAAGGATTGTTGGATGCCC+CGG 0.526647 1_2:-78363383 Msa0094940:CDS
GTTTGATTGGAAATGGAAGA+AGG 0.531244 1_2:+78365987 None:intergenic
AAACTGCAGCATCTGATCAA+TGG 0.533620 1_2:+78361880 None:intergenic
TTTAGCACCTATCCACAAAA+GGG 0.535268 1_2:-78361596 Msa0094940:three_prime_UTR
AAACATCAGTTGGTGGATGA+AGG 0.536831 1_2:+78361464 None:intergenic
TCGTGCCAAAAGGACCTTCA+GGG 0.538959 1_2:+78364951 None:intergenic
TTAAGTCTTACTATAACAGA+AGG 0.543566 1_2:-78363400 Msa0094940:CDS
GAGGCCGGCGAATCGGAGAC+CGG 0.548914 1_2:+78365851 None:intergenic
AATTCAACACAAACATCAGT+TGG 0.549766 1_2:+78361454 None:intergenic
TAGTAAGACTTAACAACGGC+AGG 0.550387 1_2:+78363410 None:intergenic
GCGTTACAGCTTGAAGTGGT+GGG 0.554549 1_2:-78361927 Msa0094940:intron
AATCTCCTCACGTTCATGAC+CGG 0.554757 1_2:+78365680 None:intergenic
TATTTGAAATTAAATTAAGA+GGG 0.555579 1_2:-78361343 Msa0094940:three_prime_UTR
AACGATTCTCCGCCACATGA+TGG 0.566084 1_2:+78365935 None:intergenic
GGATGCCCCGGTGGTGAGGG+TGG 0.570608 1_2:-78363371 Msa0094940:intron
GATGTAGTTCCAATTGCTAC+CGG 0.573966 1_2:-78365699 Msa0094940:CDS
TAGTCCTTAGAATTCAAACA+TGG 0.582114 1_2:-78361509 Msa0094940:three_prime_UTR
CAAACGAATTAGCACGTGAC+GGG 0.584689 1_2:+78366114 None:intergenic
GAATCGGAGACCGGCGACGG+CGG 0.589478 1_2:+78365860 None:intergenic
GGACATGTTAATCCCTCCGT+CGG 0.589725 1_2:-78361487 Msa0094940:three_prime_UTR
AGACCGGCGACGGCGGATCG+AGG 0.592370 1_2:+78365867 None:intergenic
GGTGGATGAAGGCCGACGGA+GGG 0.593535 1_2:+78361475 None:intergenic
TCAACACAAACATCAGTTGG+TGG 0.593833 1_2:+78361457 None:intergenic
TGTCCATAAGGATCACCGCC+AGG 0.601139 1_2:+78361903 None:intergenic
CACCTAATGGATCAAAGCGG+AGG 0.601580 1_2:+78361549 None:intergenic
TCTGTGATTATTTAGACACA+GGG 0.605541 1_2:-78361745 Msa0094940:three_prime_UTR
TAGGTGCTAAAAGTAGCTGC+AGG 0.612310 1_2:+78361608 None:intergenic
ATGATGGTGTTTGAGATCTA+CGG 0.616818 1_2:+78365951 None:intergenic
ATACACCCCACCATCAAATG+GGG 0.619440 1_2:-78366164 Msa0094940:five_prime_UTR
TTCTGCGTTACAGCTTGAAG+TGG 0.625576 1_2:-78361931 Msa0094940:intron
TGGTGGATGAAGGCCGACGG+AGG 0.626007 1_2:+78361474 None:intergenic
TTTGACTGGTCTAGACCTTG+CGG 0.626127 1_2:-78361779 Msa0094940:three_prime_UTR
TGCTACCGGTCATGAACGTG+AGG 0.630864 1_2:-78365685 Msa0094940:CDS
TTCGGTGAAGAAGACAGTTG+AGG 0.641042 1_2:-78365721 Msa0094940:CDS
AGTTGGTGGATGAAGGCCGA+CGG 0.645942 1_2:+78361471 None:intergenic
GGAGATTCAAGCTGATCTTG+AGG 0.651732 1_2:-78365664 Msa0094940:intron
AGTCCTTAGAATTCAAACAT+GGG 0.652398 1_2:-78361508 Msa0094940:three_prime_UTR
CAAGTCACAACAGTAACTGG+TGG 0.653149 1_2:+78361427 None:intergenic
CTTGAAATAGACCACCCTGA+AGG 0.658668 1_2:-78364965 Msa0094940:CDS
GCACACACTGGACATTCATG+GGG 0.668546 1_2:+78363188 None:intergenic
TACCTGATTGTGTGGCGACG+TGG 0.669661 1_2:+78365823 None:intergenic
CAGAAACTCTCTGAACCGCA+AGG 0.670121 1_2:+78361764 None:intergenic
CCAAACGAATTAGCACGTGA+CGG 0.679687 1_2:+78366113 None:intergenic
CTTGAAGTGGTGGGACCTGG+CGG 0.684429 1_2:-78361918 Msa0094940:CDS
AGATCTCAAACACCATCATG+TGG 0.684707 1_2:-78365947 Msa0094940:exon
AGTGAAGATACCTGATTGTG+TGG 0.687822 1_2:+78365815 None:intergenic
CTGATTGTGTGGCGACGTGG+CGG 0.691244 1_2:+78365826 None:intergenic
TACACCCCACCATCAAATGG+GGG 0.694244 1_2:-78366163 Msa0094940:five_prime_UTR
TCTCAAACACCATCATGTGG+CGG 0.696333 1_2:-78365944 Msa0094940:exon
GTGATTATTTAGACACAGGG+TGG 0.700670 1_2:-78361742 Msa0094940:three_prime_UTR
AGGATTGTTGGATGCCCCGG+TGG 0.708518 1_2:-78363380 Msa0094940:CDS
TGCCAAAAGGACCTTCAGGG+TGG 0.711901 1_2:+78364954 None:intergenic
GTTATAGTAAGACTTAACAA+CGG 0.724381 1_2:+78363406 None:intergenic
ATGGTGTTTGAGATCTACGG+TGG 0.739505 1_2:+78365954 None:intergenic
TTTCACCTAATGGATCAAAG+CGG 0.742764 1_2:+78361546 None:intergenic
ACTTACCACCCTCACCACCG+GGG 0.751343 1_2:+78363366 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTGAAATTAAATTAAGA+GGG - chr1_2:78366124-78366143 Msa0094940:five_prime_UTR 10.0%
!! ACACAAGTTATAAATAAAAA+TGG + chr1_2:78361934-78361953 None:intergenic 15.0%
!!! TGATTTTAAATTTTAATCTG+AGG - chr1_2:78362061-78362080 Msa0094940:intron 15.0%
!! CATTTAAAAACTTTAGTAAT+GGG + chr1_2:78362173-78362192 None:intergenic 15.0%
!! ACATTTAAAAACTTTAGTAA+TGG + chr1_2:78362174-78362193 None:intergenic 15.0%
!!! ACTAAAGTTTTTAAATGTTT+TGG - chr1_2:78362176-78362195 Msa0094940:intron 15.0%
!!! CTAAAGTTTTTAAATGTTTT+GGG - chr1_2:78362177-78362196 Msa0094940:intron 15.0%
!!! TAAAGTTTTTAAATGTTTTG+GGG - chr1_2:78362178-78362197 Msa0094940:intron 15.0%
!!! TTTGTATTTTTTGTTTGTTT+AGG - chr1_2:78362468-78362487 Msa0094940:intron 15.0%
!!! TTGTATTTTTTGTTTGTTTA+GGG - chr1_2:78362469-78362488 Msa0094940:intron 15.0%
!!! AAAATCACTTTTCTAAATTA+AGG + chr1_2:78362716-78362735 None:intergenic 15.0%
!!! TTAATTTAGAAAAGTGATTT+TGG - chr1_2:78362715-78362734 Msa0094940:intron 15.0%
!! TTTATACTTTAATTACCTAA+AGG - chr1_2:78362785-78362804 Msa0094940:intron 15.0%
!! TTATACTTTAATTACCTAAA+GGG - chr1_2:78362786-78362805 Msa0094940:intron 15.0%
!!! TATTTAATCTTTTTGAAGTT+TGG - chr1_2:78362935-78362954 Msa0094940:intron 15.0%
!! ATATATGATAGAACATTATA+GGG - chr1_2:78363046-78363065 Msa0094940:intron 15.0%
!!! ATTTTTGAAGAATGATAATT+TGG + chr1_2:78363269-78363288 None:intergenic 15.0%
!!! ATGTTTATAACTATTTTTAC+TGG - chr1_2:78364329-78364348 Msa0094940:intron 15.0%
!! TAAAATAAATAGGAATATGT+TGG + chr1_2:78364702-78364721 None:intergenic 15.0%
!! GAAAAAGATGTAAAATAAAT+AGG + chr1_2:78364712-78364731 None:intergenic 15.0%
!! TAGAAAAAATTACTTGAAAA+TGG - chr1_2:78365350-78365369 Msa0094940:intron 15.0%
!!! ATTTAACTAGAATTTGAAAT+TGG + chr1_2:78365417-78365436 None:intergenic 15.0%
!!! CTATTTGAAATTAAATTAAG+AGG - chr1_2:78366123-78366142 Msa0094940:five_prime_UTR 15.0%
!!! GATTTTGATGAATTTTGATT+TGG - chr1_2:78361707-78361726 Msa0094940:three_prime_UTR 20.0%
!! ACAAAATGGAAAAATAAAAG+TGG + chr1_2:78361990-78362009 None:intergenic 20.0%
!!! TTTAGTAATGGGATAATAAA+TGG + chr1_2:78362162-78362181 None:intergenic 20.0%
!! TATTTCCAAAACTATAGTAA+TGG - chr1_2:78362240-78362259 Msa0094940:intron 20.0%
!!! TTTGAAATAGCAACTATATT+GGG + chr1_2:78362304-78362323 None:intergenic 20.0%
!!! TTTTGAAATAGCAACTATAT+TGG + chr1_2:78362305-78362324 None:intergenic 20.0%
!!! CATATTATATAGGTTACTTT+TGG - chr1_2:78362425-78362444 Msa0094940:intron 20.0%
!!! AATGGTTTTGGTTTATTTTT+TGG - chr1_2:78362687-78362706 Msa0094940:intron 20.0%
!!! TGTGTTGTTAAAAATCATTA+TGG - chr1_2:78362759-78362778 Msa0094940:intron 20.0%
!!! TTTTATCTTACAATTGAGTA+TGG + chr1_2:78362905-78362924 None:intergenic 20.0%
!! CTCAATTGTAAGATAAAATA+TGG - chr1_2:78362907-78362926 Msa0094940:intron 20.0%
!! AATAGTTTCTCTTTAAACTA+AGG + chr1_2:78362988-78363007 None:intergenic 20.0%
!! GATATATGATAGAACATTAT+AGG - chr1_2:78363045-78363064 Msa0094940:intron 20.0%
!!! TATTTTCTGTCTTTAAACTT+TGG + chr1_2:78363766-78363785 None:intergenic 20.0%
!! AAAGTTTAAAGACAGAAAAT+AGG - chr1_2:78363765-78363784 Msa0094940:intron 20.0%
!! CAAGTCATTCAAATTATTAA+AGG + chr1_2:78364505-78364524 None:intergenic 20.0%
!!! TTTAAATTCTGCACAAATTT+TGG + chr1_2:78365130-78365149 None:intergenic 20.0%
!! AGTCATTTATATGAAAAATG+TGG - chr1_2:78366086-78366105 Msa0094940:five_prime_UTR 20.0%
! ATTCATCAAAATCAAGAACA+AGG + chr1_2:78361700-78361719 None:intergenic 25.0%
! ATATCAGAATAAGAGTAGTT+CGG + chr1_2:78362033-78362052 None:intergenic 25.0%
!!! CTTGTAAGATTTTTCAATCA+TGG - chr1_2:78362100-78362119 Msa0094940:intron 25.0%
! TTGAAATAGCAACTATATTG+GGG + chr1_2:78362303-78362322 None:intergenic 25.0%
! ACATTGTACTAAATAGCATA+TGG - chr1_2:78362326-78362345 Msa0094940:intron 25.0%
! GACAAGACTTCATATTATAT+AGG - chr1_2:78362415-78362434 Msa0094940:intron 25.0%
!!! ATTTTTTGTTTGTTTAGGGA+AGG - chr1_2:78362473-78362492 Msa0094940:intron 25.0%
! ACAATATGAAGAATGAAACA+GGG + chr1_2:78362819-78362838 None:intergenic 25.0%
! TTCATTATTTCAGTTGCAAA+TGG - chr1_2:78362862-78362881 Msa0094940:intron 25.0%
! AAAGACAATGAGAATTAGAT+TGG - chr1_2:78363203-78363222 Msa0094940:CDS 25.0%
! TTTGGAGGTAAAAAAATGTT+TGG + chr1_2:78363251-78363270 None:intergenic 25.0%
! TTTGAAGAATGATAATTTGG+AGG + chr1_2:78363266-78363285 None:intergenic 25.0%
!! ATATAGGTATTGTAGATTGA+TGG + chr1_2:78363445-78363464 None:intergenic 25.0%
!! TAAAGATGTTTTATGAAGGT+TGG - chr1_2:78363790-78363809 Msa0094940:intron 25.0%
! TTGAAGTTTCCAAAGTTTAA+AGG - chr1_2:78363754-78363773 Msa0094940:intron 25.0%
!! CACATTTTTCCTTTAAACTT+TGG + chr1_2:78363897-78363916 None:intergenic 25.0%
! TGCTTAAAGATGTATTATGA+AGG - chr1_2:78363915-78363934 Msa0094940:intron 25.0%
! GTTATAGTAAGACTTAACAA+CGG + chr1_2:78364064-78364083 None:intergenic 25.0%
! TTAAGTCTTACTATAACAGA+AGG - chr1_2:78364067-78364086 Msa0094940:intron 25.0%
!!! AACTTGTTTTTTTAATGCAG+AGG - chr1_2:78364215-78364234 Msa0094940:intron 25.0%
! ACATTTAACTCAATTGATCT+TGG + chr1_2:78364358-78364377 None:intergenic 25.0%
!!! TGTCAAAACACAGATTTTTT+AGG + chr1_2:78364471-78364490 None:intergenic 25.0%
! TTATCTGACAATTGATTGTT+TGG - chr1_2:78364542-78364561 Msa0094940:intron 25.0%
! AAGGATCTTATAATTAGGAA+TGG + chr1_2:78364610-78364629 None:intergenic 25.0%
! GTCAAAAGGATCTTATAATT+AGG + chr1_2:78364615-78364634 None:intergenic 25.0%
! GGACTAATAAAATTGTCAAA+AGG + chr1_2:78364629-78364648 None:intergenic 25.0%
! TAAAGTAACTCTTTCTCATA+TGG - chr1_2:78364764-78364783 Msa0094940:intron 25.0%
! AAAGTAACTCTTTCTCATAT+GGG - chr1_2:78364765-78364784 Msa0094940:intron 25.0%
! ATTACGGGAATTAAGAAAAT+TGG + chr1_2:78364839-78364858 None:intergenic 25.0%
!! TTTTCTTAATTCCCGTAATT+TGG - chr1_2:78364840-78364859 Msa0094940:intron 25.0%
!!! TAACTCGTCAATTATTTTAG+AGG + chr1_2:78365031-78365050 None:intergenic 25.0%
!! AGTTAGAGAAATGAATGTTT+TGG - chr1_2:78365046-78365065 Msa0094940:intron 25.0%
! TGTTTGATATAAAGAAACCA+CGG - chr1_2:78365212-78365231 Msa0094940:intron 25.0%
! ATTTAAATAATATGGACGAG+AGG + chr1_2:78365302-78365321 None:intergenic 25.0%
!!! CTGCACTGATTTAAATAATA+TGG + chr1_2:78365310-78365329 None:intergenic 25.0%
! GAAAATGGAATAAGAATAGT+TGG - chr1_2:78365365-78365384 Msa0094940:intron 25.0%
!!! GTGGTGCTAATTAATTTTTT+TGG - chr1_2:78365513-78365532 Msa0094940:intron 25.0%
! TTTGGAAAATTTATTCCTGA+AGG + chr1_2:78365614-78365633 None:intergenic 25.0%
! TTAAATTAAGAGGGAAACTT+TGG - chr1_2:78366133-78366152 Msa0094940:five_prime_UTR 25.0%
AGAATGAGATGAAGAAGTTA+GGG + chr1_2:78361577-78361596 None:intergenic 30.0%
!! GATTTTTCAATCATGGATAG+CGG - chr1_2:78362107-78362126 Msa0094940:intron 30.0%
TTGGGGTGAATAAAAAGATT+TGG - chr1_2:78362195-78362214 Msa0094940:intron 30.0%
TTCCAAAACTATAGTAATGG+AGG - chr1_2:78362243-78362262 Msa0094940:intron 30.0%
! TTCCTCCATTACTATAGTTT+TGG + chr1_2:78362248-78362267 None:intergenic 30.0%
! TATAGTAATGGAGGAAATGT+AGG - chr1_2:78362252-78362271 Msa0094940:intron 30.0%
GAAATGTAGGCAATAGAAAA+TGG - chr1_2:78362265-78362284 Msa0094940:intron 30.0%
TTGTACTAAATAGCATATGG+TGG - chr1_2:78362329-78362348 Msa0094940:intron 30.0%
ACAATTATATATGCAAGCTG+AGG - chr1_2:78362566-78362585 Msa0094940:intron 30.0%
TTGGCAAAACTAATGTTGTT+TGG - chr1_2:78362734-78362753 Msa0094940:intron 30.0%
GACAATATGAAGAATGAAAC+AGG + chr1_2:78362820-78362839 None:intergenic 30.0%
! CAGTGCTTCTGTTAATTTTA+TGG + chr1_2:78363334-78363353 None:intergenic 30.0%
AAATTGCAAAGACATGTAGA+AGG - chr1_2:78363387-78363406 Msa0094940:CDS 30.0%
GCTTCTGTATCGAATTATAT+AGG + chr1_2:78363461-78363480 None:intergenic 30.0%
TGCTTACATTGGATATTCTT+TGG - chr1_2:78363572-78363591 Msa0094940:intron 30.0%
TGAGGATATTGGTAAATTGT+TGG - chr1_2:78363604-78363623 Msa0094940:intron 30.0%
AAAACATGTATTAGACAACG+TGG + chr1_2:78363991-78364010 None:intergenic 30.0%
TACTATAACAGAAGGATTGT+TGG - chr1_2:78364075-78364094 Msa0094940:intron 30.0%
TGGTGATAAGTACTAGAATT+TGG - chr1_2:78364171-78364190 Msa0094940:intron 30.0%
GATCTTATAATTAGGAATGG+AGG + chr1_2:78364607-78364626 None:intergenic 30.0%
CCAAAGAGATCTTATGAAAA+GGG + chr1_2:78364650-78364669 None:intergenic 30.0%
ACCAAAGAGATCTTATGAAA+AGG + chr1_2:78364651-78364670 None:intergenic 30.0%
ATATATGTCACTGTCATAGA+GGG + chr1_2:78364932-78364951 None:intergenic 30.0%
TATATATGTCACTGTCATAG+AGG + chr1_2:78364933-78364952 None:intergenic 30.0%
ACAAAACATAAGCTCAGATA+TGG + chr1_2:78365195-78365214 None:intergenic 30.0%
ATACAGATGACCATTTCAAA+TGG - chr1_2:78365435-78365454 Msa0094940:intron 30.0%
TACAGATGACCATTTCAAAT+GGG - chr1_2:78365436-78365455 Msa0094940:intron 30.0%
!!! TTTTGCATTACAGCTTTAAG+TGG - chr1_2:78365494-78365513 Msa0094940:intron 30.0%
GGAATGTAAAACAATCTCTT+TGG + chr1_2:78365632-78365651 None:intergenic 30.0%
TTCTGTGATTATTTAGACAC+AGG - chr1_2:78365721-78365740 Msa0094940:CDS 30.0%
TCTGTGATTATTTAGACACA+GGG - chr1_2:78365722-78365741 Msa0094940:CDS 30.0%
ATTAAGCTACAAATCCTGTT+AGG - chr1_2:78365755-78365774 Msa0094940:intron 30.0%
TAGCGTTGCTATCAATTATT+AGG + chr1_2:78365798-78365817 None:intergenic 30.0%
TAGTCCTTAGAATTCAAACA+TGG - chr1_2:78365958-78365977 Msa0094940:five_prime_UTR 30.0%
AGTCCTTAGAATTCAAACAT+GGG - chr1_2:78365959-78365978 Msa0094940:five_prime_UTR 30.0%
AATTCAACACAAACATCAGT+TGG + chr1_2:78366016-78366035 None:intergenic 30.0%
TAAATCAAACCCCCATTTGA+TGG + chr1_2:78361316-78361335 None:intergenic 35.0%
! CAAATGGGGGTTTGATTTAT+TGG - chr1_2:78361317-78361336 Msa0094940:three_prime_UTR 35.0%
GTTTGATTGGAAATGGAAGA+AGG + chr1_2:78361483-78361502 None:intergenic 35.0%
! ATGATGGTGTTTGAGATCTA+CGG + chr1_2:78361519-78361538 None:intergenic 35.0%
! ATGAAGAAGTTAGGGTTTTG+AGG + chr1_2:78361569-78361588 None:intergenic 35.0%
GAGAATGAGATGAAGAAGTT+AGG + chr1_2:78361578-78361597 None:intergenic 35.0%
GGCATAGGAAATTGACAAAA+TGG + chr1_2:78362004-78362023 None:intergenic 35.0%
ATAAGAGTAGTTCGGATTCA+AGG + chr1_2:78362025-78362044 None:intergenic 35.0%
ATAGCAACTATATTGGGGTT+AGG + chr1_2:78362298-78362317 None:intergenic 35.0%
CAACTAATTCACACACACAT+AGG + chr1_2:78362636-78362655 None:intergenic 35.0%
! GTGTGAATTAGTTGTTTCCA+AGG - chr1_2:78362642-78362661 Msa0094940:intron 35.0%
!! TTCCAAGGTTGATTTTGATG+TGG - chr1_2:78362657-78362676 Msa0094940:intron 35.0%
!! TCCAAGGTTGATTTTGATGT+GGG - chr1_2:78362658-78362677 Msa0094940:intron 35.0%
TAAGAAAGACCCAGAGATTA+AGG - chr1_2:78363007-78363026 Msa0094940:intron 35.0%
CAATCAACTCCTTAATCTCT+GGG + chr1_2:78363019-78363038 None:intergenic 35.0%
TCAATCAACTCCTTAATCTC+TGG + chr1_2:78363020-78363039 None:intergenic 35.0%
GATCTTATAATACCATCCCT+AGG + chr1_2:78363182-78363201 None:intergenic 35.0%
! ATTCTTTGGAAGTAAGCATG+AGG - chr1_2:78363586-78363605 Msa0094940:intron 35.0%
! GGCGTAAAGATGTTTTATGA+AGG - chr1_2:78363786-78363805 Msa0094940:intron 35.0%
TAACATGGCTGGAAAATCAA+GGG - chr1_2:78363820-78363839 Msa0094940:intron 35.0%
ACAGATTCGTAAAGAAAGAC+AGG + chr1_2:78364131-78364150 None:intergenic 35.0%
CTTATCACCAGATTGTGAAA+AGG + chr1_2:78364161-78364180 None:intergenic 35.0%
ATTATTGCCCTCAACTTTCA+CGG - chr1_2:78364424-78364443 Msa0094940:intron 35.0%
GTATACATTAAACAGCGACA+AGG + chr1_2:78364582-78364601 None:intergenic 35.0%
! CCCTTTTCATAAGATCTCTT+TGG - chr1_2:78364647-78364666 Msa0094940:intron 35.0%
!!! GAAATGAATGTTTTGGCACT+AGG - chr1_2:78365053-78365072 Msa0094940:intron 35.0%
!!! TCTGCACAAATTTTGGCTAA+AGG + chr1_2:78365123-78365142 None:intergenic 35.0%
CATGCATAAAATTCCTCCAT+GGG - chr1_2:78365261-78365280 Msa0094940:intron 35.0%
ATGCATAAAATTCCTCCATG+GGG - chr1_2:78365262-78365281 Msa0094940:intron 35.0%
TAAATAATATGGACGAGAGG+TGG + chr1_2:78365299-78365318 None:intergenic 35.0%
! AGTAAAGCACCCATTTGAAA+TGG + chr1_2:78365448-78365467 None:intergenic 35.0%
! CATTGCAACGTGATTTTGAA+AGG + chr1_2:78365657-78365676 None:intergenic 35.0%
!!! ATGCTTTGTTTGGTTTTGAC+TGG - chr1_2:78365674-78365693 Msa0094940:CDS 35.0%
!!! TCCTGTTAGGTTGTCATTTT+TGG - chr1_2:78365768-78365787 Msa0094940:intron 35.0%
ACCAAAAATGACAACCTAAC+AGG + chr1_2:78365772-78365791 None:intergenic 35.0%
! TTTTAGCACCTATCCACAAA+AGG - chr1_2:78365870-78365889 Msa0094940:CDS 35.0%
TTTAGCACCTATCCACAAAA+GGG - chr1_2:78365871-78365890 Msa0094940:CDS 35.0%
! TAAACTTGTAGTCCCTTTTG+TGG + chr1_2:78365886-78365905 None:intergenic 35.0%
! TTTCACCTAATGGATCAAAG+CGG + chr1_2:78365924-78365943 None:intergenic 35.0%
!!! TTGACTGCTTTTTCACCTAA+TGG + chr1_2:78365934-78365953 None:intergenic 35.0%
TGTCCCATGTTTGAATTCTA+AGG + chr1_2:78365965-78365984 None:intergenic 35.0%
TGAAAAATGTGGAGACAATC+TGG - chr1_2:78366097-78366116 Msa0094940:five_prime_UTR 35.0%
! GGAAACTTTGGTTCCTTAAT+CGG - chr1_2:78366145-78366164 Msa0094940:five_prime_UTR 35.0%
! TTTGAGATCTACGGTGGTTA+CGG + chr1_2:78361510-78361529 None:intergenic 40.0%
AGATCTCAAACACCATCATG+TGG - chr1_2:78361520-78361539 Msa0094940:three_prime_UTR 40.0%
AGTGAAGATACCTGATTGTG+TGG + chr1_2:78361655-78361674 None:intergenic 40.0%
! GATTTGGTTGTGATTGTAGC+TGG - chr1_2:78361723-78361742 Msa0094940:three_prime_UTR 40.0%
GATGTAGTTCCAATTGCTAC+CGG - chr1_2:78361768-78361787 Msa0094940:three_prime_UTR 40.0%
GAAAACCACTATAGCGAGTT+AGG - chr1_2:78362129-78362148 Msa0094940:intron 40.0%
AGTATCCTAACTCGCTATAG+TGG + chr1_2:78362137-78362156 None:intergenic 40.0%
GTAGGCAATAGAAAATGGAG+AGG - chr1_2:78362270-78362289 Msa0094940:intron 40.0%
! AGCATATGGTGGAACAATAG+TGG - chr1_2:78362340-78362359 Msa0094940:intron 40.0%
! GTGGAACAATAGTGGTTTGT+TGG - chr1_2:78362348-78362367 Msa0094940:intron 40.0%
CTATAAGCGCTATACCTCTA+TGG + chr1_2:78362386-78362405 None:intergenic 40.0%
TTACTAACCTTCGTGCCAAA+AGG + chr1_2:78362529-78362548 None:intergenic 40.0%
ACCCACATCAAAATCAACCT+TGG + chr1_2:78362662-78362681 None:intergenic 40.0%
!! GTTGATTTTGATGTGGGTTG+CGG - chr1_2:78362664-78362683 Msa0094940:intron 40.0%
! GGCTTGGTTGTTGTTGTATA+CGG - chr1_2:78363108-78363127 Msa0094940:intron 40.0%
GTTATAACTCAGTGAAGGGT+AGG + chr1_2:78363149-78363168 None:intergenic 40.0%
! GGGTGTTATAACTCAGTGAA+GGG + chr1_2:78363153-78363172 None:intergenic 40.0%
! TGGGTGTTATAACTCAGTGA+AGG + chr1_2:78363154-78363173 None:intergenic 40.0%
TTATAACACCCAAGTCTCCT+AGG - chr1_2:78363162-78363181 Msa0094940:intron 40.0%
TATAACACCCAAGTCTCCTA+GGG - chr1_2:78363163-78363182 Msa0094940:intron 40.0%
TCGATACAGAAGCAATCTTC+TGG - chr1_2:78363468-78363487 Msa0094940:intron 40.0%
GGATGCTAAGTTGCTTACAT+TGG - chr1_2:78363561-78363580 Msa0094940:intron 40.0%
GGAAGTAAGCATGAGGATAT+TGG - chr1_2:78363593-78363612 Msa0094940:intron 40.0%
!! GAGGATAGCAACTTGTTAAC+AGG + chr1_2:78363631-78363650 None:intergenic 40.0%
CTCAATTACTTCACCGTACT+CGG - chr1_2:78363648-78363667 Msa0094940:intron 40.0%
!! AAGGTTGGTGAAGAGTAACA+TGG - chr1_2:78363805-78363824 Msa0094940:intron 40.0%
GTAACATGGCTGGAAAATCA+AGG - chr1_2:78363819-78363838 Msa0094940:intron 40.0%
AACATGGCTGGAAAATCAAG+GGG - chr1_2:78363821-78363840 Msa0094940:intron 40.0%
TGTCTGCTTTCGCTGTTTAT+AGG - chr1_2:78364029-78364048 Msa0094940:intron 40.0%
TAGTAAGACTTAACAACGGC+AGG + chr1_2:78364060-78364079 None:intergenic 40.0%
! GTGCAAACCTTTTCACAATC+TGG - chr1_2:78364151-78364170 Msa0094940:intron 40.0%
!! AGCATGATGTTGTCTGGTTT+TGG - chr1_2:78364241-78364260 Msa0094940:intron 40.0%
TGAAAATACTGTGCACACAC+TGG + chr1_2:78364294-78364313 None:intergenic 40.0%
! AGTGTGTGCACAGTATTTTC+AGG - chr1_2:78364293-78364312 Msa0094940:intron 40.0%
ATGAAGTCCGTGAAAGTTGA+GGG + chr1_2:78364434-78364453 None:intergenic 40.0%
TATGAAGTCCGTGAAAGTTG+AGG + chr1_2:78364435-78364454 None:intergenic 40.0%
TCAACTTTCACGGACTTCAT+AGG - chr1_2:78364434-78364453 Msa0094940:intron 40.0%
ATTCCCGTAATTTGGCCAAA+AGG - chr1_2:78364848-78364867 Msa0094940:intron 40.0%
TTCCCGTAATTTGGCCAAAA+GGG - chr1_2:78364849-78364868 Msa0094940:intron 40.0%
GCATGCATAAAATTCCTCCA+TGG - chr1_2:78365260-78365279 Msa0094940:intron 40.0%
GCTATATATATTCCCCATGG+AGG + chr1_2:78365277-78365296 None:intergenic 40.0%
GTGGCTATATATATTCCCCA+TGG + chr1_2:78365280-78365299 None:intergenic 40.0%
TCTGATCAATGGTGTCCATA+AGG + chr1_2:78365579-78365598 None:intergenic 40.0%
AAACTGCAGCATCTGATCAA+TGG + chr1_2:78365590-78365609 None:intergenic 40.0%
!! GCAACGTGATTTTGAAAGGT+AGG + chr1_2:78365653-78365672 None:intergenic 40.0%
! TCACGTTGCAATGCTTTGTT+TGG - chr1_2:78365664-78365683 Msa0094940:intron 40.0%
GTGATTATTTAGACACAGGG+TGG - chr1_2:78365725-78365744 Msa0094940:CDS 40.0%
! TTGTAGTCCCTTTTGTGGAT+AGG + chr1_2:78365881-78365900 None:intergenic 40.0%
!! AAACATCAGTTGGTGGATGA+AGG + chr1_2:78366006-78366025 None:intergenic 40.0%
TCAACACAAACATCAGTTGG+TGG + chr1_2:78366013-78366032 None:intergenic 40.0%
AGTCAAGTCACAACAGTAAC+TGG + chr1_2:78366046-78366065 None:intergenic 40.0%
TACTGTTGTGACTTGACTGT+TGG - chr1_2:78366048-78366067 Msa0094940:five_prime_UTR 40.0%
! TCAAACCCCCATTTGATGGT+GGG + chr1_2:78361312-78361331 None:intergenic 45.0%
ATCAAACCCCCATTTGATGG+TGG + chr1_2:78361313-78361332 None:intergenic 45.0%
CAAACGAATTAGCACGTGAC+GGG + chr1_2:78361356-78361375 None:intergenic 45.0%
CCAAACGAATTAGCACGTGA+CGG + chr1_2:78361357-78361376 None:intergenic 45.0%
CGTCACGTGCTAATTCGTTT+GGG - chr1_2:78361355-78361374 Msa0094940:three_prime_UTR 45.0%
! CGCGCTCAAGTTTAACTTCA+AGG + chr1_2:78361381-78361400 None:intergenic 45.0%
! ATGGTGTTTGAGATCTACGG+TGG + chr1_2:78361516-78361535 None:intergenic 45.0%
TCTCAAACACCATCATGTGG+CGG - chr1_2:78361523-78361542 Msa0094940:three_prime_UTR 45.0%
!!! GAAGTTAGGGTTTTGAGGTG+AGG + chr1_2:78361564-78361583 None:intergenic 45.0%
GGTTGTGATTGTAGCTGGTT+CGG - chr1_2:78361728-78361747 Msa0094940:three_prime_UTR 45.0%
TTCGGTGAAGAAGACAGTTG+AGG - chr1_2:78361746-78361765 Msa0094940:three_prime_UTR 45.0%
AATCTCCTCACGTTCATGAC+CGG + chr1_2:78361790-78361809 None:intergenic 45.0%
GGAGATTCAAGCTGATCTTG+AGG - chr1_2:78361803-78361822 Msa0094940:three_prime_UTR 45.0%
GTAGTTCGGATTCAAGGCAT+AGG + chr1_2:78362019-78362038 None:intergenic 45.0%
GGAATTCTGCTACACCATAG+AGG - chr1_2:78362369-78362388 Msa0094940:intron 45.0%
CTTCAGGGTGGTCTATTTCA+AGG + chr1_2:78362504-78362523 None:intergenic 45.0%
CTTGAAATAGACCACCCTGA+AGG - chr1_2:78362502-78362521 Msa0094940:intron 45.0%
!! TTTTGATGTGGGTTGCGGAA+TGG - chr1_2:78362669-78362688 Msa0094940:intron 45.0%
AACAGGGACTCATACCCTTT+AGG + chr1_2:78362803-78362822 None:intergenic 45.0%
! GGTTGGCTACATGGATCAAA+CGG + chr1_2:78363072-78363091 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGCA+GGG + chr1_2:78363093-78363112 None:intergenic 45.0%
AAGGGTAGGTAGGAAGACTA+GGG + chr1_2:78363135-78363154 None:intergenic 45.0%
TAACTCAGTGAAGGGTAGGT+AGG + chr1_2:78363145-78363164 None:intergenic 45.0%
ATACCATCCCTAGGAGACTT+GGG + chr1_2:78363173-78363192 None:intergenic 45.0%
AATACCATCCCTAGGAGACT+TGG + chr1_2:78363174-78363193 None:intergenic 45.0%
TGCAAAGACATGTAGAAGGC+TGG - chr1_2:78363391-78363410 Msa0094940:CDS 45.0%
CGAGTACGGTGAAGTAATTG+AGG + chr1_2:78363650-78363669 None:intergenic 45.0%
TCACCTCTTACAACCGAGTA+CGG + chr1_2:78363664-78363683 None:intergenic 45.0%
TAAGAGGTGAAGAGTAACCG+TGG - chr1_2:78363674-78363693 Msa0094940:intron 45.0%
TAACCGTGGCTGGAAAATCA+AGG - chr1_2:78363688-78363707 Msa0094940:intron 45.0%
AACCGTGGCTGGAAAATCAA+GGG - chr1_2:78363689-78363708 Msa0094940:intron 45.0%
TTGGTGAAGAGTAACATGGC+TGG - chr1_2:78363809-78363828 Msa0094940:intron 45.0%
AGGATGAGCATGATGTTGTC+TGG - chr1_2:78364235-78364254 Msa0094940:intron 45.0%
!!! TGATGTTGTCTGGTTTTGGC+TGG - chr1_2:78364245-78364264 Msa0094940:intron 45.0%
TGCACACACTGGACATTCAT+GGG + chr1_2:78364283-78364302 None:intergenic 45.0%
! GACCCTTTTGGCCAAATTAC+GGG + chr1_2:78364854-78364873 None:intergenic 45.0%
! GGACCCTTTTGGCCAAATTA+CGG + chr1_2:78364855-78364874 None:intergenic 45.0%
GCCAAAAGGGTCCTATAGTT+GGG - chr1_2:78364862-78364881 Msa0094940:intron 45.0%
CCAAAAGGGTCCTATAGTTG+GGG - chr1_2:78364863-78364882 Msa0094940:intron 45.0%
CTACATCGATCCCCAACTAT+AGG + chr1_2:78364876-78364895 None:intergenic 45.0%
GCATTCATGAGTGATGACAC+TGG + chr1_2:78365166-78365185 None:intergenic 45.0%
TTCTGCGTTACAGCTTGAAG+TGG - chr1_2:78365536-78365555 Msa0094940:intron 45.0%
! AGATGCTGCAGTTTTCCTTC+AGG - chr1_2:78365596-78365615 Msa0094940:intron 45.0%
!! TTTGACTGGTCTAGACCTTG+CGG - chr1_2:78365688-78365707 Msa0094940:CDS 45.0%
TAGGTGCTAAAAGTAGCTGC+AGG + chr1_2:78365862-78365881 None:intergenic 45.0%
CAAGTCACAACAGTAACTGG+TGG + chr1_2:78366043-78366062 None:intergenic 45.0%
GTTGTGACTTGACTGTTGGT+TGG - chr1_2:78366052-78366071 Msa0094940:five_prime_UTR 45.0%
GGGCACTCAAAATCCGATTA+AGG + chr1_2:78366161-78366180 None:intergenic 45.0%
!! TGTATTAAATATATTAAATT+TGG - chr1_2:78363540-78363559 Msa0094940:intron 5.0%
!! CAAACCCCCATTTGATGGTG+GGG + chr1_2:78361311-78361330 None:intergenic 50.0%
CCGTCACGTGCTAATTCGTT+TGG - chr1_2:78361354-78361373 Msa0094940:three_prime_UTR 50.0%
CGGCGTCGTTTGATTGGAAA+TGG + chr1_2:78361490-78361509 None:intergenic 50.0%
TGGTTACGGCGTCGTTTGAT+TGG + chr1_2:78361496-78361515 None:intergenic 50.0%
AACGATTCTCCGCCACATGA+TGG + chr1_2:78361535-78361554 None:intergenic 50.0%
CGTTCATGACCGGTAGCAAT+TGG + chr1_2:78361780-78361799 None:intergenic 50.0%
TCGTGCCAAAAGGACCTTCA+GGG + chr1_2:78362519-78362538 None:intergenic 50.0%
TTCGTGCCAAAAGGACCTTC+AGG + chr1_2:78362520-78362539 None:intergenic 50.0%
! TGAAGGTCCTTTTGGCACGA+AGG - chr1_2:78362519-78362538 Msa0094940:intron 50.0%
!! TGTGGGTTGCGGAATGGTTT+TGG - chr1_2:78362675-78362694 Msa0094940:intron 50.0%
!! ACTAAGCAGGGTTGGCTACA+TGG + chr1_2:78363081-78363100 None:intergenic 50.0%
ATGTAGCCAACCCTGCTTAG+TGG - chr1_2:78363080-78363099 Msa0094940:intron 50.0%
TGTAGCCAACCCTGCTTAGT+GGG - chr1_2:78363081-78363100 Msa0094940:intron 50.0%
CTTATCCCACTAAGCAGGGT+TGG + chr1_2:78363089-78363108 None:intergenic 50.0%
CAACCCTGCTTAGTGGGATA+AGG - chr1_2:78363087-78363106 Msa0094940:intron 50.0%
! CAAGCCTTATCCCACTAAGC+AGG + chr1_2:78363094-78363113 None:intergenic 50.0%
CTGCTTAGTGGGATAAGGCT+TGG - chr1_2:78363092-78363111 Msa0094940:intron 50.0%
GAAGGGTAGGTAGGAAGACT+AGG + chr1_2:78363136-78363155 None:intergenic 50.0%
TCACCGTACTCGGTTGTAAG+AGG - chr1_2:78363658-78363677 Msa0094940:intron 50.0%
ACCGTGGCTGGAAAATCAAG+GGG - chr1_2:78363690-78363709 Msa0094940:intron 50.0%
! ACCCCTTGATTTTCCAGCCA+CGG + chr1_2:78363694-78363713 None:intergenic 50.0%
AGAAGGATTGTTGGATGCCC+CGG - chr1_2:78364084-78364103 Msa0094940:intron 50.0%
!!! TGTTGTCTGGTTTTGGCTGG+AGG - chr1_2:78364248-78364267 Msa0094940:intron 50.0%
GCACACACTGGACATTCATG+GGG + chr1_2:78364282-78364301 None:intergenic 50.0%
GTGCACACACTGGACATTCA+TGG + chr1_2:78364284-78364303 None:intergenic 50.0%
GGCCAAAAGGGTCCTATAGT+TGG - chr1_2:78364861-78364880 Msa0094940:intron 50.0%
! CCCCAACTATAGGACCCTTT+TGG + chr1_2:78364866-78364885 None:intergenic 50.0%
TGTCAGCATACACTACACCG+TGG + chr1_2:78365232-78365251 None:intergenic 50.0%
TGCGTTACAGCTTGAAGTGG+TGG - chr1_2:78365539-78365558 Msa0094940:intron 50.0%
GCGTTACAGCTTGAAGTGGT+GGG - chr1_2:78365540-78365559 Msa0094940:intron 50.0%
CAGAAACTCTCTGAACCGCA+AGG + chr1_2:78365706-78365725 None:intergenic 50.0%
AGCCTCCGCTTTGATCCATT+AGG - chr1_2:78365916-78365935 Msa0094940:CDS 50.0%
! CACCTAATGGATCAAAGCGG+AGG + chr1_2:78365921-78365940 None:intergenic 50.0%
GGACATGTTAATCCCTCCGT+CGG - chr1_2:78365980-78365999 Msa0094940:five_prime_UTR 50.0%
TACCTGATTGTGTGGCGACG+TGG + chr1_2:78361647-78361666 None:intergenic 55.0%
TGCTACCGGTCATGAACGTG+AGG - chr1_2:78361782-78361801 Msa0094940:three_prime_UTR 55.0%
! GACCACCCTGAAGGTCCTTT+TGG - chr1_2:78362511-78362530 Msa0094940:intron 55.0%
TGCCAAAAGGACCTTCAGGG+TGG + chr1_2:78362516-78362535 None:intergenic 55.0%
ACACCCAAGTCTCCTAGGGA+TGG - chr1_2:78363167-78363186 Msa0094940:intron 55.0%
AGGTGAAGAGTAACCGTGGC+TGG - chr1_2:78363678-78363697 Msa0094940:intron 55.0%
ACACTTACCACCCTCACCAC+CGG + chr1_2:78364106-78364125 None:intergenic 55.0%
!!! GTCTGGTTTTGGCTGGAGGA+AGG - chr1_2:78364252-78364271 Msa0094940:intron 55.0%
TGTCCATAAGGATCACCGCC+AGG + chr1_2:78365567-78365586 None:intergenic 55.0%
!! AGTTGGTGGATGAAGGCCGA+CGG + chr1_2:78365999-78366018 None:intergenic 55.0%
CTGATTGTGTGGCGACGTGG+CGG + chr1_2:78361644-78361663 None:intergenic 60.0%
AGGATTGTTGGATGCCCCGG+TGG - chr1_2:78364087-78364106 Msa0094940:intron 60.0%
ACTTACCACCCTCACCACCG+GGG + chr1_2:78364104-78364123 None:intergenic 60.0%
CACTTACCACCCTCACCACC+GGG + chr1_2:78364105-78364124 None:intergenic 60.0%
! CAGCTTGAAGTGGTGGGACC+TGG - chr1_2:78365546-78365565 Msa0094940:intron 60.0%
! CTTGAAGTGGTGGGACCTGG+CGG - chr1_2:78365549-78365568 Msa0094940:intron 60.0%
GGACCTGGCGGTGATCCTTA+TGG - chr1_2:78365561-78365580 Msa0094940:intron 60.0%
CGCCACGTCGCCACACAATC+AGG - chr1_2:78361642-78361661 Msa0094940:three_prime_UTR 65.0%
TGTTGGATGCCCCGGTGGTG+AGG - chr1_2:78364092-78364111 Msa0094940:intron 65.0%
GTTGGATGCCCCGGTGGTGA+GGG - chr1_2:78364093-78364112 Msa0094940:intron 65.0%
GGTGGATGAAGGCCGACGGA+GGG + chr1_2:78365995-78366014 None:intergenic 65.0%
! TGGTGGATGAAGGCCGACGG+AGG + chr1_2:78365996-78366015 None:intergenic 65.0%
CATCCTCGATCCGCCGTCGC+CGG - chr1_2:78361597-78361616 Msa0094940:three_prime_UTR 70.0%
GAATCGGAGACCGGCGACGG+CGG + chr1_2:78361610-78361629 None:intergenic 70.0%
GGCGAATCGGAGACCGGCGA+CGG + chr1_2:78361613-78361632 None:intergenic 70.0%
! GTCGCCGGTCTCCGATTCGC+CGG - chr1_2:78361612-78361631 Msa0094940:three_prime_UTR 70.0%
GAGGCCGGCGAATCGGAGAC+CGG + chr1_2:78361619-78361638 None:intergenic 70.0%
AGACCGGCGACGGCGGATCG+AGG + chr1_2:78361603-78361622 None:intergenic 75.0%
GGCGGCTGAGGCCGGCGAAT+CGG + chr1_2:78361626-78361645 None:intergenic 75.0%
GTGTGGCGACGTGGCGGCTG+AGG + chr1_2:78361638-78361657 None:intergenic 75.0%
GGATGCCCCGGTGGTGAGGG+TGG - chr1_2:78364096-78364115 Msa0094940:intron 75.0%
! GGCGACGTGGCGGCTGAGGC+CGG + chr1_2:78361634-78361653 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 78361306 78366183 78361306 ID=Msa0094940;Name=Msa0094940
chr1_2 mRNA 78361306 78366183 78361306 ID=Msa0094940-mRNA-1;Parent=Msa0094940;Name=Msa0094940-mRNA-1;_AED=0.07;_eAED=0.07;_QI=231|1|1|1|1|1|6|590|150
chr1_2 exon 78361306 78361940 78361306 ID=Msa0094940-mRNA-1:exon:27934;Parent=Msa0094940-mRNA-1
chr1_2 exon 78363175 78363254 78363175 ID=Msa0094940-mRNA-1:exon:27933;Parent=Msa0094940-mRNA-1
chr1_2 exon 78363372 78363438 78363372 ID=Msa0094940-mRNA-1:exon:27932;Parent=Msa0094940-mRNA-1
chr1_2 exon 78364949 78364999 78364949 ID=Msa0094940-mRNA-1:exon:27931;Parent=Msa0094940-mRNA-1
chr1_2 exon 78365665 78365747 78365665 ID=Msa0094940-mRNA-1:exon:27930;Parent=Msa0094940-mRNA-1
chr1_2 exon 78365826 78366183 78365826 ID=Msa0094940-mRNA-1:exon:27929;Parent=Msa0094940-mRNA-1
chr1_2 five_prime_UTR 78365953 78366183 78365953 ID=Msa0094940-mRNA-1:five_prime_utr;Parent=Msa0094940-mRNA-1
chr1_2 CDS 78365826 78365952 78365826 ID=Msa0094940-mRNA-1:cds;Parent=Msa0094940-mRNA-1
chr1_2 CDS 78365665 78365747 78365665 ID=Msa0094940-mRNA-1:cds;Parent=Msa0094940-mRNA-1
chr1_2 CDS 78364949 78364999 78364949 ID=Msa0094940-mRNA-1:cds;Parent=Msa0094940-mRNA-1
chr1_2 CDS 78363372 78363438 78363372 ID=Msa0094940-mRNA-1:cds;Parent=Msa0094940-mRNA-1
chr1_2 CDS 78363175 78363254 78363175 ID=Msa0094940-mRNA-1:cds;Parent=Msa0094940-mRNA-1
chr1_2 CDS 78361896 78361940 78361896 ID=Msa0094940-mRNA-1:cds;Parent=Msa0094940-mRNA-1
chr1_2 three_prime_UTR 78361306 78361895 78361306 ID=Msa0094940-mRNA-1:three_prime_utr;Parent=Msa0094940-mRNA-1
Gene Sequence

>Msa0094940

ATGTGGCGGAGAATCGTTTCTTCTCCTCACCTCAAAACCCTAACTTCTTCATCTCATTCTCATCCTCGATCCGCCGTCGCCGGTCTCCGATTCGCCGGCCTCAGCCGCCACGTCGCCACACAATCAGCTGGTTCGGTGAAGAAGACAGTTGAGGATGTAGTTCCAATTGCTACCGGTCATGAACGTGAGGAGATTCAAGCTGATCTTGAGGGAAGGAATATCCTTGAAATAGACCACCCTGAAGGTCCTTTTGGCACGAAGGAAGCACCTGCCGTTGTTAAGTCTTACTATAACAGAAGGATTGTTGGATGCCCCGGTGGTGAGGGTGAGGATGAGCATGATGTTGTCTGGTTTTGGCTGGAGGAAGGCAAGCCCCATGAATGTCCAGTGTGTGCACAGTATTTTCAGCTTGAAGTGGTGGGACCTGGCGGTGATCCTTATGGACACCATTGA

Protein sequence

>Msa0094940

MWRRIVSSPHLKTLTSSSHSHPRSAVAGLRFAGLSRHVATQSAGSVKKTVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGEGEDEHDVVWFWLEEGKPHECPVCAQYFQLEVVGPGGDPYGHH*