Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449480 | XP_013459385.1 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 2.93e-56 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449480 | sp|F4JCN9|PRE4_ARATH | 73.118 | 93 | 23 | 2 | 1 | 92 | 1 | 92 | 2.72e-38 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449480 | I3STA1 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 1.40e-56 | 178 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0449480 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000040 | Msa0449480 | 0.801284 | 9.684249e-49 | -8.615850e-47 |
| Msa0075560 | Msa0449480 | 0.814174 | 1.762397e-51 | -8.615850e-47 |
| Msa0380680 | Msa0449480 | 0.800389 | 1.474665e-48 | -8.615850e-47 |
| Msa0449480 | Msa0814230 | 0.806868 | 6.672792e-50 | -8.615850e-47 |
| Msa0449480 | Msa0913550 | 0.816172 | 6.340810e-52 | -8.615850e-47 |
| Msa0449480 | Msa0951150 | 0.815191 | 1.049042e-51 | -8.615850e-47 |
| Msa0449480 | Msa0987640 | 0.821103 | 4.823890e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449480 | MtrunA17_Chr3g0093001 | 100.000 | 92 | 0 | 0 | 1 | 92 | 1 | 92 | 2.70e-60 | 178 |
| Msa0449480 | MtrunA17_Chr7g0217141 | 72.340 | 94 | 23 | 2 | 1 | 92 | 1 | 93 | 7.13e-38 | 122 |
| Msa0449480 | MtrunA17_Chr5g0416431 | 72.727 | 77 | 19 | 1 | 17 | 91 | 17 | 93 | 2.10e-33 | 110 |
| Msa0449480 | MtrunA17_Chr6g0453041 | 73.077 | 78 | 19 | 1 | 17 | 92 | 15 | 92 | 1.25e-32 | 108 |
| Msa0449480 | MtrunA17_Chr8g0362131 | 66.667 | 84 | 25 | 2 | 10 | 91 | 10 | 92 | 2.86e-31 | 105 |
| Msa0449480 | MtrunA17_Chr7g0237771 | 48.611 | 72 | 37 | 0 | 8 | 79 | 3 | 74 | 2.30e-11 | 54.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0449480 | AT3G47710.1 | 73.118 | 93 | 23 | 2 | 1 | 92 | 1 | 92 | 2.77e-39 | 125 |
| Msa0449480 | AT1G74500.1 | 77.922 | 77 | 16 | 1 | 17 | 92 | 17 | 93 | 9.83e-36 | 117 |
| Msa0449480 | AT1G26945.1 | 79.730 | 74 | 13 | 1 | 19 | 90 | 19 | 92 | 1.55e-34 | 114 |
| Msa0449480 | AT3G28857.1 | 65.957 | 94 | 27 | 3 | 1 | 91 | 1 | 92 | 1.51e-32 | 108 |
| Msa0449480 | AT5G39860.1 | 69.231 | 78 | 21 | 2 | 17 | 91 | 15 | 92 | 1.01e-29 | 102 |
| Msa0449480 | AT5G15160.1 | 66.667 | 75 | 22 | 2 | 19 | 90 | 18 | 92 | 2.58e-27 | 95.9 |
Find 15 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCTTCGAGGGTGTTGC+AGG | 0.348972 | 3_3:-33183377 | Msa0449480:CDS |
| TGAGCGTTTGTCTGAGCTAT+TGG | 0.392203 | 3_3:-33183305 | Msa0449480:CDS |
| GAGCTCCTATTGCGAATCTC+AGG | 0.466230 | 3_3:+33184246 | None:intergenic |
| TATATCAGGTTTCAGCTTCG+AGG | 0.481740 | 3_3:-33183387 | Msa0449480:intron |
| TTCTTCCTGAGATTCGCAAT+AGG | 0.484861 | 3_3:-33184251 | Msa0449480:CDS |
| AGGAAGAAGTTGCTGCAGCT+TGG | 0.493730 | 3_3:+33184266 | None:intergenic |
| CTAGCAGGAGGTCGCGGTCA+CGG | 0.548676 | 3_3:-33184341 | Msa0449480:CDS |
| ATATCAGGTTTCAGCTTCGA+GGG | 0.550730 | 3_3:-33183386 | Msa0449480:intron |
| GCTCAGACAAACGCTCACTT+AGG | 0.559789 | 3_3:+33183311 | None:intergenic |
| GCAGCTTGGAGACAAGATCA+TGG | 0.563717 | 3_3:+33184280 | None:intergenic |
| AGATGTCTAGCAGGAGGTCG+CGG | 0.564343 | 3_3:-33184347 | Msa0449480:CDS |
| TCGCAATAGGAGCTCTGACA+AGG | 0.593557 | 3_3:-33184238 | Msa0449480:intron |
| AAGATCATGGATCTGATCGT+CGG | 0.643584 | 3_3:+33184293 | None:intergenic |
| TTATAAAGATGTCTAGCAGG+AGG | 0.648667 | 3_3:-33184353 | None:intergenic |
| CACGGCAAACAAGTAGCTCG+AGG | 0.663330 | 3_3:-33184323 | Msa0449480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGACTTTTATAAAAAATAA+TGG | + | chr3_3:33183512-33183531 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATAAAAGTCAT+TGG | - | chr3_3:33183512-33183531 | Msa0449480:intron | 10.0% |
| !! | TGTATTAAAAATATAGTATA+TGG | + | chr3_3:33183606-33183625 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTTTTTTTTCT+TGG | + | chr3_3:33183925-33183944 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAACTTGAA+AGG | - | chr3_3:33183928-33183947 | Msa0449480:intron | 10.0% |
| !!! | ATGACTTTTATAAAAAATAA+TGG | + | chr3_3:33183512-33183531 | None:intergenic | 10.0% |
| !!! | TTATTTTTTATAAAAGTCAT+TGG | - | chr3_3:33183512-33183531 | Msa0449480:intron | 10.0% |
| !! | TGTATTAAAAATATAGTATA+TGG | + | chr3_3:33183606-33183625 | None:intergenic | 10.0% |
| !!! | AAGTTTTTTTTTTTTTTTCT+TGG | + | chr3_3:33183925-33183944 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAAACTTGAA+AGG | - | chr3_3:33183928-33183947 | Msa0449480:intron | 10.0% |
| !!! | AAATTGAATTTTACTATATC+AGG | - | chr3_3:33184196-33184215 | Msa0449480:intron | 15.0% |
| !!! | AAATTGAATTTTACTATATC+AGG | - | chr3_3:33184196-33184215 | Msa0449480:intron | 15.0% |
| ! | CTAGGAAACAAATAATATGT+AGG | + | chr3_3:33183391-33183410 | None:intergenic | 25.0% |
| ! | ATATAGTATATGGTAGTTAC+AGG | + | chr3_3:33183596-33183615 | None:intergenic | 25.0% |
| !!! | AGAAGAGATTAGTTTTATAG+CGG | - | chr3_3:33183627-33183646 | Msa0449480:intron | 25.0% |
| ! | ATTTAAACCAACTTAATCCT+AGG | - | chr3_3:33184016-33184035 | Msa0449480:intron | 25.0% |
| ! | TGAAAACAATTCTTGTAGAT+GGG | + | chr3_3:33184127-33184146 | None:intergenic | 25.0% |
| ! | TTGAAAACAATTCTTGTAGA+TGG | + | chr3_3:33184128-33184147 | None:intergenic | 25.0% |
| ! | CTAGGAAACAAATAATATGT+AGG | + | chr3_3:33183391-33183410 | None:intergenic | 25.0% |
| ! | ATATAGTATATGGTAGTTAC+AGG | + | chr3_3:33183596-33183615 | None:intergenic | 25.0% |
| !!! | AGAAGAGATTAGTTTTATAG+CGG | - | chr3_3:33183627-33183646 | Msa0449480:intron | 25.0% |
| ! | ATTTAAACCAACTTAATCCT+AGG | - | chr3_3:33184016-33184035 | Msa0449480:intron | 25.0% |
| ! | TGAAAACAATTCTTGTAGAT+GGG | + | chr3_3:33184127-33184146 | None:intergenic | 25.0% |
| ! | TTGAAAACAATTCTTGTAGA+TGG | + | chr3_3:33184128-33184147 | None:intergenic | 25.0% |
| !! | CTAGTCTTTTGATTAAGACT+AGG | + | chr3_3:33183409-33183428 | None:intergenic | 30.0% |
| GATAATGCATACTATATGCA+GGG | - | chr3_3:33183832-33183851 | Msa0449480:intron | 30.0% | |
| ACCATACTTATTCACCTTTA+AGG | - | chr3_3:33183876-33183895 | Msa0449480:intron | 30.0% | |
| ACCTTAAAGGTGAATAAGTA+TGG | + | chr3_3:33183880-33183899 | None:intergenic | 30.0% | |
| TACACTAGAGTAAGTATAAG+AGG | - | chr3_3:33183991-33184010 | Msa0449480:intron | 30.0% | |
| ACACTAGAGTAAGTATAAGA+GGG | - | chr3_3:33183992-33184011 | Msa0449480:intron | 30.0% | |
| !! | CTAGTCTTTTGATTAAGACT+AGG | + | chr3_3:33183409-33183428 | None:intergenic | 30.0% |
| GATAATGCATACTATATGCA+GGG | - | chr3_3:33183832-33183851 | Msa0449480:intron | 30.0% | |
| ACCATACTTATTCACCTTTA+AGG | - | chr3_3:33183876-33183895 | Msa0449480:intron | 30.0% | |
| ACCTTAAAGGTGAATAAGTA+TGG | + | chr3_3:33183880-33183899 | None:intergenic | 30.0% | |
| TACACTAGAGTAAGTATAAG+AGG | - | chr3_3:33183991-33184010 | Msa0449480:intron | 30.0% | |
| ACACTAGAGTAAGTATAAGA+GGG | - | chr3_3:33183992-33184011 | Msa0449480:intron | 30.0% | |
| GAGATACCCTATTAATCTAC+CGG | - | chr3_3:33183671-33183690 | Msa0449480:intron | 35.0% | |
| TGAGCTTAGTTCATTTGGTA+AGG | - | chr3_3:33183809-33183828 | Msa0449480:intron | 35.0% | |
| GAGCTTAGTTCATTTGGTAA+GGG | - | chr3_3:33183810-33183829 | Msa0449480:intron | 35.0% | |
| GGATAATGCATACTATATGC+AGG | - | chr3_3:33183831-33183850 | Msa0449480:intron | 35.0% | |
| !! | TTATTCACCTTTAAGGTCTC+TGG | - | chr3_3:33183883-33183902 | Msa0449480:intron | 35.0% |
| ! | TTTCTTGGTCAATTAGCCTA+GGG | + | chr3_3:33183910-33183929 | None:intergenic | 35.0% |
| !! | TTTTCTTGGTCAATTAGCCT+AGG | + | chr3_3:33183911-33183930 | None:intergenic | 35.0% |
| CAAGAAAAAGGAACAACAAC+AGG | - | chr3_3:33184052-33184071 | Msa0449480:intron | 35.0% | |
| TTAATCCCCTCGTATTTGTT+AGG | + | chr3_3:33184078-33184097 | None:intergenic | 35.0% | |
| TCTTGTAGATGGGAAAAAAC+TGG | + | chr3_3:33184117-33184136 | None:intergenic | 35.0% | |
| GAGATACCCTATTAATCTAC+CGG | - | chr3_3:33183671-33183690 | Msa0449480:intron | 35.0% | |
| TGAGCTTAGTTCATTTGGTA+AGG | - | chr3_3:33183809-33183828 | Msa0449480:intron | 35.0% | |
| GAGCTTAGTTCATTTGGTAA+GGG | - | chr3_3:33183810-33183829 | Msa0449480:intron | 35.0% | |
| GGATAATGCATACTATATGC+AGG | - | chr3_3:33183831-33183850 | Msa0449480:intron | 35.0% | |
| !! | TTATTCACCTTTAAGGTCTC+TGG | - | chr3_3:33183883-33183902 | Msa0449480:intron | 35.0% |
| ! | TTTCTTGGTCAATTAGCCTA+GGG | + | chr3_3:33183910-33183929 | None:intergenic | 35.0% |
| !! | TTTTCTTGGTCAATTAGCCT+AGG | + | chr3_3:33183911-33183930 | None:intergenic | 35.0% |
| CAAGAAAAAGGAACAACAAC+AGG | - | chr3_3:33184052-33184071 | Msa0449480:intron | 35.0% | |
| TTAATCCCCTCGTATTTGTT+AGG | + | chr3_3:33184078-33184097 | None:intergenic | 35.0% | |
| TCTTGTAGATGGGAAAAAAC+TGG | + | chr3_3:33184117-33184136 | None:intergenic | 35.0% | |
| AAGATCATGGATCTGATCGT+CGG | + | chr3_3:33183307-33183326 | None:intergenic | 40.0% | |
| TTCTTCCTGAGATTCGCAAT+AGG | - | chr3_3:33183346-33183365 | Msa0449480:CDS | 40.0% | |
| GACTCTCCGGTAGATTAATA+GGG | + | chr3_3:33183680-33183699 | None:intergenic | 40.0% | |
| TGACTCTCCGGTAGATTAAT+AGG | + | chr3_3:33183681-33183700 | None:intergenic | 40.0% | |
| !! | GAGCTGTTTTGTGAGCTTTT+AGG | + | chr3_3:33183723-33183742 | None:intergenic | 40.0% |
| AGCTCAGAAGGACTTCTTTA+CGG | + | chr3_3:33183795-33183814 | None:intergenic | 40.0% | |
| CCAAATGAACTAAGCTCAGA+AGG | + | chr3_3:33183807-33183826 | None:intergenic | 40.0% | |
| CCTTCTGAGCTTAGTTCATT+TGG | - | chr3_3:33183804-33183823 | Msa0449480:intron | 40.0% | |
| GTGAATAAGTATGGTGTCTG+GGG | + | chr3_3:33183871-33183890 | None:intergenic | 40.0% | |
| GGTGAATAAGTATGGTGTCT+GGG | + | chr3_3:33183872-33183891 | None:intergenic | 40.0% | |
| AGGTGAATAAGTATGGTGTC+TGG | + | chr3_3:33183873-33183892 | None:intergenic | 40.0% | |
| ! | TTCTTGGTCAATTAGCCTAG+GGG | + | chr3_3:33183909-33183928 | None:intergenic | 40.0% |
| !! | CCTTTTTCTTGTTATGTCCC+TGG | + | chr3_3:33184043-33184062 | None:intergenic | 40.0% |
| CCAGGGACATAACAAGAAAA+AGG | - | chr3_3:33184040-33184059 | Msa0449480:intron | 40.0% | |
| AACAGGCCTAACAAATACGA+GGG | - | chr3_3:33184069-33184088 | Msa0449480:intron | 40.0% | |
| TATATCAGGTTTCAGCTTCG+AGG | - | chr3_3:33184210-33184229 | Msa0449480:intron | 40.0% | |
| ATATCAGGTTTCAGCTTCGA+GGG | - | chr3_3:33184211-33184230 | Msa0449480:intron | 40.0% | |
| AAGATCATGGATCTGATCGT+CGG | + | chr3_3:33183307-33183326 | None:intergenic | 40.0% | |
| TTCTTCCTGAGATTCGCAAT+AGG | - | chr3_3:33183346-33183365 | Msa0449480:CDS | 40.0% | |
| GACTCTCCGGTAGATTAATA+GGG | + | chr3_3:33183680-33183699 | None:intergenic | 40.0% | |
| TGACTCTCCGGTAGATTAAT+AGG | + | chr3_3:33183681-33183700 | None:intergenic | 40.0% | |
| !! | GAGCTGTTTTGTGAGCTTTT+AGG | + | chr3_3:33183723-33183742 | None:intergenic | 40.0% |
| AGCTCAGAAGGACTTCTTTA+CGG | + | chr3_3:33183795-33183814 | None:intergenic | 40.0% | |
| CCAAATGAACTAAGCTCAGA+AGG | + | chr3_3:33183807-33183826 | None:intergenic | 40.0% | |
| CCTTCTGAGCTTAGTTCATT+TGG | - | chr3_3:33183804-33183823 | Msa0449480:intron | 40.0% | |
| GTGAATAAGTATGGTGTCTG+GGG | + | chr3_3:33183871-33183890 | None:intergenic | 40.0% | |
| GGTGAATAAGTATGGTGTCT+GGG | + | chr3_3:33183872-33183891 | None:intergenic | 40.0% | |
| AGGTGAATAAGTATGGTGTC+TGG | + | chr3_3:33183873-33183892 | None:intergenic | 40.0% | |
| ! | TTCTTGGTCAATTAGCCTAG+GGG | + | chr3_3:33183909-33183928 | None:intergenic | 40.0% |
| !! | CCTTTTTCTTGTTATGTCCC+TGG | + | chr3_3:33184043-33184062 | None:intergenic | 40.0% |
| CCAGGGACATAACAAGAAAA+AGG | - | chr3_3:33184040-33184059 | Msa0449480:intron | 40.0% | |
| AACAGGCCTAACAAATACGA+GGG | - | chr3_3:33184069-33184088 | Msa0449480:intron | 40.0% | |
| TATATCAGGTTTCAGCTTCG+AGG | - | chr3_3:33184210-33184229 | Msa0449480:intron | 40.0% | |
| ATATCAGGTTTCAGCTTCGA+GGG | - | chr3_3:33184211-33184230 | Msa0449480:intron | 40.0% | |
| ! | CATAGTTAGAGCTGACTCTC+CGG | + | chr3_3:33183693-33183712 | None:intergenic | 45.0% |
| ! | AGAGTCAGCTCTAACTATGG+TGG | - | chr3_3:33183694-33183713 | Msa0449480:intron | 45.0% |
| TGCATACTATATGCAGGGAC+CGG | - | chr3_3:33183837-33183856 | Msa0449480:intron | 45.0% | |
| ACCAACTTAATCCTAGGTCC+AGG | - | chr3_3:33184022-33184041 | Msa0449480:intron | 45.0% | |
| CCAACTTAATCCTAGGTCCA+GGG | - | chr3_3:33184023-33184042 | Msa0449480:intron | 45.0% | |
| CAACAGGCCTAACAAATACG+AGG | - | chr3_3:33184068-33184087 | Msa0449480:intron | 45.0% | |
| ACAGGCCTAACAAATACGAG+GGG | - | chr3_3:33184070-33184089 | Msa0449480:intron | 45.0% | |
| TGAGCGTTTGTCTGAGCTAT+TGG | - | chr3_3:33184292-33184311 | Msa0449480:CDS | 45.0% | |
| ! | CATAGTTAGAGCTGACTCTC+CGG | + | chr3_3:33183693-33183712 | None:intergenic | 45.0% |
| ! | AGAGTCAGCTCTAACTATGG+TGG | - | chr3_3:33183694-33183713 | Msa0449480:intron | 45.0% |
| TGCATACTATATGCAGGGAC+CGG | - | chr3_3:33183837-33183856 | Msa0449480:intron | 45.0% | |
| ACCAACTTAATCCTAGGTCC+AGG | - | chr3_3:33184022-33184041 | Msa0449480:intron | 45.0% | |
| CCAACTTAATCCTAGGTCCA+GGG | - | chr3_3:33184023-33184042 | Msa0449480:intron | 45.0% | |
| CAACAGGCCTAACAAATACG+AGG | - | chr3_3:33184068-33184087 | Msa0449480:intron | 45.0% | |
| ACAGGCCTAACAAATACGAG+GGG | - | chr3_3:33184070-33184089 | Msa0449480:intron | 45.0% | |
| TGAGCGTTTGTCTGAGCTAT+TGG | - | chr3_3:33184292-33184311 | Msa0449480:CDS | 45.0% | |
| GCAGCTTGGAGACAAGATCA+TGG | + | chr3_3:33183320-33183339 | None:intergenic | 50.0% | |
| AGGAAGAAGTTGCTGCAGCT+TGG | + | chr3_3:33183334-33183353 | None:intergenic | 50.0% | |
| GAGCTCCTATTGCGAATCTC+AGG | + | chr3_3:33183354-33183373 | None:intergenic | 50.0% | |
| ! | TCGCAATAGGAGCTCTGACA+AGG | - | chr3_3:33183359-33183378 | Msa0449480:CDS | 50.0% |
| ! | CGGAGAGTCAGCTCTAACTA+TGG | - | chr3_3:33183691-33183710 | Msa0449480:intron | 50.0% |
| CCCTGGACCTAGGATTAAGT+TGG | + | chr3_3:33184026-33184045 | None:intergenic | 50.0% | |
| ! | CTTGTTATGTCCCTGGACCT+AGG | + | chr3_3:33184036-33184055 | None:intergenic | 50.0% |
| GCTCAGACAAACGCTCACTT+AGG | + | chr3_3:33184289-33184308 | None:intergenic | 50.0% | |
| GCAGCTTGGAGACAAGATCA+TGG | + | chr3_3:33183320-33183339 | None:intergenic | 50.0% | |
| AGGAAGAAGTTGCTGCAGCT+TGG | + | chr3_3:33183334-33183353 | None:intergenic | 50.0% | |
| GAGCTCCTATTGCGAATCTC+AGG | + | chr3_3:33183354-33183373 | None:intergenic | 50.0% | |
| ! | TCGCAATAGGAGCTCTGACA+AGG | - | chr3_3:33183359-33183378 | Msa0449480:CDS | 50.0% |
| ! | CGGAGAGTCAGCTCTAACTA+TGG | - | chr3_3:33183691-33183710 | Msa0449480:intron | 50.0% |
| CCCTGGACCTAGGATTAAGT+TGG | + | chr3_3:33184026-33184045 | None:intergenic | 50.0% | |
| ! | CTTGTTATGTCCCTGGACCT+AGG | + | chr3_3:33184036-33184055 | None:intergenic | 50.0% |
| GCTCAGACAAACGCTCACTT+AGG | + | chr3_3:33184289-33184308 | None:intergenic | 50.0% | |
| CACGGCAAACAAGTAGCTCG+AGG | - | chr3_3:33183274-33183293 | Msa0449480:CDS | 55.0% | |
| CTAGGGGCCAGAGACCTTAA+AGG | + | chr3_3:33183893-33183912 | None:intergenic | 55.0% | |
| !! | CTTTAAGGTCTCTGGCCCCT+AGG | - | chr3_3:33183891-33183910 | Msa0449480:intron | 55.0% |
| !! | TTCAGCTTCGAGGGTGTTGC+AGG | - | chr3_3:33184220-33184239 | Msa0449480:intron | 55.0% |
| CACGGCAAACAAGTAGCTCG+AGG | - | chr3_3:33183274-33183293 | Msa0449480:CDS | 55.0% | |
| CTAGGGGCCAGAGACCTTAA+AGG | + | chr3_3:33183893-33183912 | None:intergenic | 55.0% | |
| !! | CTTTAAGGTCTCTGGCCCCT+AGG | - | chr3_3:33183891-33183910 | Msa0449480:intron | 55.0% |
| !! | TTCAGCTTCGAGGGTGTTGC+AGG | - | chr3_3:33184220-33184239 | Msa0449480:intron | 55.0% |
| ! | GGTGTCTGGGGTTCGAACTC+CGG | + | chr3_3:33183859-33183878 | None:intergenic | 60.0% |
| ! | GGTGTCTGGGGTTCGAACTC+CGG | + | chr3_3:33183859-33183878 | None:intergenic | 60.0% |
| CTAGCAGGAGGTCGCGGTCA+CGG | - | chr3_3:33183256-33183275 | Msa0449480:CDS | 65.0% | |
| CTAGCAGGAGGTCGCGGTCA+CGG | - | chr3_3:33183256-33183275 | Msa0449480:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 33183252 | 33184367 | 33183252 | ID=Msa0449480;Name=Msa0449480 |
| chr3_3 | mRNA | 33183252 | 33184367 | 33183252 | ID=Msa0449480-mRNA-1;Parent=Msa0449480;Name=Msa0449480-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|1|1|2|0|92 |
| chr3_3 | exon | 33184239 | 33184367 | 33184239 | ID=Msa0449480-mRNA-1:exon:5945;Parent=Msa0449480-mRNA-1 |
| chr3_3 | exon | 33183252 | 33183401 | 33183252 | ID=Msa0449480-mRNA-1:exon:5944;Parent=Msa0449480-mRNA-1 |
| chr3_3 | CDS | 33184239 | 33184367 | 33184239 | ID=Msa0449480-mRNA-1:cds;Parent=Msa0449480-mRNA-1 |
| chr3_3 | CDS | 33183252 | 33183401 | 33183252 | ID=Msa0449480-mRNA-1:cds;Parent=Msa0449480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
