AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380680 MtrunA17_Chr3g0134271 96.273 322 12 0 1 322 1 322 0.0 641
Msa0380680 MtrunA17_Chr1g0198911 86.957 322 40 1 1 322 1 320 0.0 580
Msa0380680 MtrunA17_Chr1g0152931 86.154 325 42 2 1 322 1 325 0.0 575
Msa0380680 MtrunA17_Chr4g0061721 59.006 322 124 2 3 321 2 318 2.84e-131 377
Msa0380680 MtrunA17_Chr4g0061731 57.764 322 129 3 3 321 2 319 3.49e-128 369
Msa0380680 MtrunA17_Chr8g0349621 28.664 307 172 7 6 277 23 317 1.31e-25 105
Msa0380680 MtrunA17_Chr3g0079001 28.571 252 157 6 67 297 77 326 5.46e-17 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380680 AT3G16150.1 83.692 325 50 1 1 322 1 325 0.0 564
Msa0380680 AT5G08100.1 57.716 324 122 3 1 321 1 312 1.06e-127 367
Msa0380680 AT5G08100.2 56.967 244 91 2 80 321 1 232 4.47e-94 279
Msa0380680 AT4G00590.1 27.244 312 186 7 6 282 15 320 3.29e-20 90.9
Msa0380680 AT5G61540.1 28.571 266 151 9 67 300 80 338 1.42e-17 82.8
Msa0380680 AT4G00590.2 27.152 302 184 8 6 282 15 305 7.41e-17 80.9
Msa0380680 AT5G61540.3 28.750 240 132 9 93 300 4 236 1.01e-14 73.2
Msa0380680 AT5G61540.2 28.750 240 132 9 93 300 4 236 1.01e-14 73.2

Find 91 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATGGAGGTTGGAATT+TGG 0.172718 3_1:+82534721 Msa0380680:CDS
GTTCATGGAGGTTGGAATTT+GGG 0.266618 3_1:+82534722 Msa0380680:CDS
TCAATTGTAATGGAATGTTT+AGG 0.266625 3_1:+82534679 Msa0380680:CDS
TCTTATTGCTGTGTCTAATA+AGG 0.277779 3_1:+82534638 Msa0380680:CDS
CAATTGTAATGGAATGTTTA+GGG 0.287602 3_1:+82534680 Msa0380680:CDS
AATAAGGGTGAAGTGGCTTA+TGG 0.294879 3_1:+82534654 Msa0380680:CDS
CGTCTTGATGAAGGGTTTGC+TGG 0.320904 3_1:+82534615 Msa0380680:CDS
GGTTGGGCTATTGCTGTTCA+TGG 0.339677 3_1:+82533364 Msa0380680:CDS
TGTGCTGCTGCAACCTCAAC+TGG 0.368919 3_1:+82534390 Msa0380680:CDS
TGACGGTGTGTTGGAAGATT+AGG 0.377061 3_1:-82533403 None:intergenic
AAAGGAAGCTAATACAATAT+TGG 0.379155 3_1:+82534132 Msa0380680:CDS
TTTCAGCATACCAACATTAT+CGG 0.395803 3_1:-82534104 None:intergenic
AGGGGATGTGCAACTGAGAA+TGG 0.403815 3_1:+82534699 Msa0380680:CDS
ATAAGGGTGAAGTGGCTTAT+GGG 0.407004 3_1:+82534655 Msa0380680:CDS
ATTGCTGTTCATGGCGGCGC+TGG 0.414973 3_1:+82533373 Msa0380680:CDS
AGCAAAAGGAACGGTGGAAA+TGG 0.416209 3_1:+82533799 Msa0380680:CDS
ACATTCGGTAAGAAGCTGTT+TGG 0.418583 3_1:-82533434 None:intergenic
GCTTATGGGTTCAATTGTAA+TGG 0.420402 3_1:+82534669 Msa0380680:CDS
CTTACCGAATGTCTCAATCT+TGG 0.425909 3_1:+82533445 Msa0380680:CDS
CATTCTTACCTCGCCTTCTC+CGG 0.431764 3_1:+82533929 Msa0380680:CDS
AGAAGATGTGGTGCTATATC+TGG 0.431819 3_1:+82533848 Msa0380680:CDS
CTTATTGCTGTGTCTAATAA+GGG 0.432612 3_1:+82534639 Msa0380680:CDS
ACAAGACGAGCAAGAGAGAT+TGG 0.433669 3_1:-82533890 None:intergenic
AACAAAATGAGTGGTCGAAT+TGG 0.448923 3_1:+82534423 Msa0380680:CDS
TTCAGCATACCAACATTATC+GGG 0.458771 3_1:-82534103 None:intergenic
GGATCTGCTCTGACAGCAAA+AGG 0.463031 3_1:+82533785 Msa0380680:CDS
ATTAAGCATCGTCTTGATGA+AGG 0.463221 3_1:+82534606 Msa0380680:CDS
AGAAGAATTTGCTAGGGAAC+AGG 0.465537 3_1:+82533955 Msa0380680:CDS
GACGTCGAGTGCGGAAGCAT+TGG 0.472505 3_1:-82533485 None:intergenic
ATTGGTGATTCACCTCTCAT+AGG 0.473172 3_1:+82534441 Msa0380680:CDS
TGCAACTGAGAATGGGTTCA+TGG 0.477091 3_1:+82534707 Msa0380680:CDS
ACCACACATCCGACGGTCTC+CGG 0.480495 3_1:-82534348 None:intergenic
TAATCTTCCAACACACCGTC+AGG 0.481716 3_1:+82533405 Msa0380680:CDS
CTCTCTTGCTCGTCTTGTCA+TGG 0.483008 3_1:+82533895 Msa0380680:CDS
ACGTGAAGTGGCTGCAGTTA+TGG 0.491646 3_1:+82534542 Msa0380680:CDS
GTTCATCAGCCCTCCAGTTG+AGG 0.494907 3_1:-82534403 None:intergenic
AAATTCTTCTGCACCGGAGA+AGG 0.500532 3_1:-82533942 None:intergenic
GAGAATGGGTTCATGGAGGT+TGG 0.502391 3_1:+82534714 Msa0380680:CDS
GATTCACCTCTCATAGGTGC+TGG 0.502766 3_1:+82534447 Msa0380680:CDS
GATAGTCCAGTGAAAATGAA+TGG 0.507847 3_1:+82534303 Msa0380680:CDS
CCTAGCAAATTCTTCTGCAC+CGG 0.509592 3_1:-82533948 None:intergenic
GCTTCTTCCTGACGGTGTGT+TGG 0.511337 3_1:-82533412 None:intergenic
GGGGATGTGCAACTGAGAAT+GGG 0.515436 3_1:+82534700 Msa0380680:CDS
GGAAATGGAGGCTAGTATCA+TGG 0.537266 3_1:+82533814 Msa0380680:CDS
GATACCAAGATTGAGACATT+CGG 0.538052 3_1:-82533449 None:intergenic
CCGGTGCAGAAGAATTTGCT+AGG 0.539891 3_1:+82533948 Msa0380680:CDS
GACCGTCGGATGTGTGGTGG+TGG 0.541481 3_1:+82534353 Msa0380680:CDS
GTTATGGAGTACAAAGGCTA+TGG 0.546040 3_1:+82534558 Msa0380680:CDS
GTGTGTGGAGTTTCATGCAC+TGG 0.546331 3_1:+82534486 Msa0380680:CDS
CTGCTGCAACCTCAACTGGA+GGG 0.550431 3_1:+82534394 Msa0380680:CDS
GCTGTTTGGCTTCTTCCTGA+CGG 0.552502 3_1:-82533420 None:intergenic
TGGCACTCTTGCACGTGAAG+TGG 0.556232 3_1:+82534530 Msa0380680:CDS
TTCATCACTCCCGATAATGT+TGG 0.557667 3_1:+82534094 Msa0380680:CDS
AATTGTAATGGAATGTTTAG+GGG 0.558475 3_1:+82534681 Msa0380680:CDS
GAGAAGGCGAGGTAAGAATG+AGG 0.562126 3_1:-82533926 None:intergenic
GTTTGATTATCGAATTCCAA+CGG 0.581762 3_1:+82534263 Msa0380680:intron
GCCGGAGACCGTCGGATGTG+TGG 0.582295 3_1:+82534347 Msa0380680:CDS
GAAGGTGAAGCTATCATTCG+TGG 0.583136 3_1:+82534510 Msa0380680:CDS
TGTTCATGGCGGCGCTGGTG+TGG 0.585081 3_1:+82533378 Msa0380680:CDS
GCCGATGAGCATTTACGCGC+CGG 0.592527 3_1:+82534329 Msa0380680:CDS
AGAAGGCGAGGTAAGAATGA+GGG 0.593655 3_1:-82533925 None:intergenic
CCACGGCCAGAATTGAAAAG+TGG 0.595287 3_1:-82533764 None:intergenic
CTATGGACTTCAACAAGCAG+TGG 0.595577 3_1:+82534575 Msa0380680:CDS
TTAAGCATCGTCTTGATGAA+GGG 0.596066 3_1:+82534607 Msa0380680:CDS
TTGCTGTCAGAGCAGATCCA+CGG 0.605965 3_1:-82533781 None:intergenic
GCTGCTGCAACCTCAACTGG+AGG 0.606206 3_1:+82534393 Msa0380680:CDS
TGCTCTGACAGCAAAAGGAA+CGG 0.607232 3_1:+82533790 Msa0380680:CDS
GGAGTTTCATGCACTGGTGA+AGG 0.610329 3_1:+82534492 Msa0380680:CDS
TTTCTAGGGCGTGGAGACTG+AGG 0.612061 3_1:+82534060 Msa0380680:intron
GTCCACCACCACACATCCGA+CGG 0.619811 3_1:-82534355 None:intergenic
TGTGTCTAATAAGGGTGAAG+TGG 0.621047 3_1:+82534647 Msa0380680:CDS
AAAAGGAACGGTGGAAATGG+AGG 0.622339 3_1:+82533802 Msa0380680:CDS
CGGTGCAGAAGAATTTGCTA+GGG 0.622722 3_1:+82533949 Msa0380680:CDS
GAAGGCGAGGTAAGAATGAG+GGG 0.630197 3_1:-82533924 None:intergenic
ATTTACGCGCCGGAGACCGT+CGG 0.633728 3_1:+82534339 Msa0380680:CDS
ATGGAGGCTAGTATCATGGA+TGG 0.635651 3_1:+82533818 Msa0380680:CDS
TCCGGCGCGTAAATGCTCAT+CGG 0.640097 3_1:-82534330 None:intergenic
AAGTTCGACGACGTCGAGTG+CGG 0.645430 3_1:-82533494 None:intergenic
CGAGTGCGGAAGCATTGGAT+CGG 0.648150 3_1:-82533480 None:intergenic
TAAGTTCCAGCACCTATGAG+AGG 0.650295 3_1:-82534453 None:intergenic
CTTCTGCACCGGAGAAGGCG+AGG 0.656386 3_1:-82533937 None:intergenic
GGAGACCGTCGGATGTGTGG+TGG 0.674288 3_1:+82534350 Msa0380680:CDS
GATGGTAACAAGAGAAGATG+TGG 0.682088 3_1:+82533836 Msa0380680:CDS
TGGTATGCTGAAACTCGCAA+AGG 0.682548 3_1:+82534114 Msa0380680:CDS
TGGGCTATTGCTGTTCATGG+CGG 0.684758 3_1:+82533367 Msa0380680:CDS
ACTTATGCATGTGATGTGTG+TGG 0.685580 3_1:+82534471 Msa0380680:CDS
GCTGCAGTTATGGAGTACAA+AGG 0.689411 3_1:+82534552 Msa0380680:CDS
TCTGACAGCAAAAGGAACGG+TGG 0.711989 3_1:+82533793 Msa0380680:CDS
TGTGTGGTGGTGGACAGTCA+AGG 0.729603 3_1:+82534363 Msa0380680:CDS
GGGCTGATGAACAAAATGAG+TGG 0.736737 3_1:+82534414 Msa0380680:CDS
AACTGAGAATGGGTTCATGG+AGG 0.788867 3_1:+82534710 Msa0380680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATATTATTGTCATTA+TGG - chr3_1:82533651-82533670 None:intergenic 10.0%
!! AATATTTATAGATCAAAAAT+TGG - chr3_1:82534008-82534027 None:intergenic 10.0%
!! AAATTATATTATTGTCATTA+TGG - chr3_1:82533651-82533670 None:intergenic 10.0%
!! AATATTTATAGATCAAAAAT+TGG - chr3_1:82534008-82534027 None:intergenic 10.0%
!! GATTATGAATGATATAAATT+AGG - chr3_1:82533565-82533584 None:intergenic 15.0%
!! ATTTATATCATTCATAATCA+TGG + chr3_1:82533566-82533585 Msa0380680:intron 15.0%
!! TTTATATCATTCATAATCAT+GGG + chr3_1:82533567-82533586 Msa0380680:intron 15.0%
!!! GTTTTTAATCAAAAGATATT+TGG + chr3_1:82534029-82534048 Msa0380680:intron 15.0%
!! GATTATGAATGATATAAATT+AGG - chr3_1:82533565-82533584 None:intergenic 15.0%
!! ATTTATATCATTCATAATCA+TGG + chr3_1:82533566-82533585 Msa0380680:intron 15.0%
!! TTTATATCATTCATAATCAT+GGG + chr3_1:82533567-82533586 Msa0380680:intron 15.0%
!!! GTTTTTAATCAAAAGATATT+TGG + chr3_1:82534029-82534048 Msa0380680:intron 15.0%
!! AAATTAGGTTAGGTTTATTA+CGG - chr3_1:82533550-82533569 None:intergenic 20.0%
!! TGAATGATATAAATTAGGTT+AGG - chr3_1:82533560-82533579 None:intergenic 20.0%
!!! TTTCTGTTTTTGTTGATTTT+AGG + chr3_1:82533704-82533723 Msa0380680:intron 20.0%
!!! TTCTGTTTTTGTTGATTTTA+GGG + chr3_1:82533705-82533724 Msa0380680:intron 20.0%
!! TTATTAATGAATGTGTTTGA+TGG + chr3_1:82534229-82534248 Msa0380680:intron 20.0%
!! AAATTAGGTTAGGTTTATTA+CGG - chr3_1:82533550-82533569 None:intergenic 20.0%
!! TGAATGATATAAATTAGGTT+AGG - chr3_1:82533560-82533579 None:intergenic 20.0%
!!! TTTCTGTTTTTGTTGATTTT+AGG + chr3_1:82533704-82533723 Msa0380680:intron 20.0%
!!! TTCTGTTTTTGTTGATTTTA+GGG + chr3_1:82533705-82533724 Msa0380680:intron 20.0%
!! TTATTAATGAATGTGTTTGA+TGG + chr3_1:82534229-82534248 Msa0380680:intron 20.0%
! AACTATAGATTCGAAAATAC+CGG - chr3_1:82533680-82533699 None:intergenic 25.0%
!!! TTTAGGGTTCTTTTTTTGAT+AGG + chr3_1:82533721-82533740 Msa0380680:intron 25.0%
!!! TATTTGGTCATGTTTTTTCT+AGG + chr3_1:82534045-82534064 Msa0380680:intron 25.0%
!!! ATTTGGTCATGTTTTTTCTA+GGG + chr3_1:82534046-82534065 Msa0380680:intron 25.0%
! AAAGGAAGCTAATACAATAT+TGG + chr3_1:82534132-82534151 Msa0380680:CDS 25.0%
! TCACTTGTGTAATTAAAATG+TGG + chr3_1:82534191-82534210 Msa0380680:intron 25.0%
!! TCAATTGTAATGGAATGTTT+AGG + chr3_1:82534679-82534698 Msa0380680:CDS 25.0%
!! CAATTGTAATGGAATGTTTA+GGG + chr3_1:82534680-82534699 Msa0380680:CDS 25.0%
!! AATTGTAATGGAATGTTTAG+GGG + chr3_1:82534681-82534700 Msa0380680:CDS 25.0%
! AACTATAGATTCGAAAATAC+CGG - chr3_1:82533680-82533699 None:intergenic 25.0%
!!! TTTAGGGTTCTTTTTTTGAT+AGG + chr3_1:82533721-82533740 Msa0380680:intron 25.0%
!!! TATTTGGTCATGTTTTTTCT+AGG + chr3_1:82534045-82534064 Msa0380680:intron 25.0%
!!! ATTTGGTCATGTTTTTTCTA+GGG + chr3_1:82534046-82534065 Msa0380680:intron 25.0%
! AAAGGAAGCTAATACAATAT+TGG + chr3_1:82534132-82534151 Msa0380680:CDS 25.0%
! TCACTTGTGTAATTAAAATG+TGG + chr3_1:82534191-82534210 Msa0380680:intron 25.0%
!! TCAATTGTAATGGAATGTTT+AGG + chr3_1:82534679-82534698 Msa0380680:CDS 25.0%
!! CAATTGTAATGGAATGTTTA+GGG + chr3_1:82534680-82534699 Msa0380680:CDS 25.0%
!! AATTGTAATGGAATGTTTAG+GGG + chr3_1:82534681-82534700 Msa0380680:CDS 25.0%
TCATTCATAATCATGGGAAA+AGG + chr3_1:82533573-82533592 Msa0380680:intron 30.0%
! AAGAGAGATTGGATTTTTCA+CGG - chr3_1:82533882-82533901 None:intergenic 30.0%
TTTCAGCATACCAACATTAT+CGG - chr3_1:82534107-82534126 None:intergenic 30.0%
TAATGAATGTGTTTGATGGA+CGG + chr3_1:82534233-82534252 Msa0380680:intron 30.0%
GTTTGATTATCGAATTCCAA+CGG + chr3_1:82534263-82534282 Msa0380680:intron 30.0%
TCTTATTGCTGTGTCTAATA+AGG + chr3_1:82534638-82534657 Msa0380680:CDS 30.0%
CTTATTGCTGTGTCTAATAA+GGG + chr3_1:82534639-82534658 Msa0380680:CDS 30.0%
TCATTCATAATCATGGGAAA+AGG + chr3_1:82533573-82533592 Msa0380680:intron 30.0%
! AAGAGAGATTGGATTTTTCA+CGG - chr3_1:82533882-82533901 None:intergenic 30.0%
TTTCAGCATACCAACATTAT+CGG - chr3_1:82534107-82534126 None:intergenic 30.0%
TAATGAATGTGTTTGATGGA+CGG + chr3_1:82534233-82534252 Msa0380680:intron 30.0%
GTTTGATTATCGAATTCCAA+CGG + chr3_1:82534263-82534282 Msa0380680:intron 30.0%
TCTTATTGCTGTGTCTAATA+AGG + chr3_1:82534638-82534657 Msa0380680:CDS 30.0%
CTTATTGCTGTGTCTAATAA+GGG + chr3_1:82534639-82534658 Msa0380680:CDS 30.0%
GATACCAAGATTGAGACATT+CGG - chr3_1:82533452-82533471 None:intergenic 35.0%
GTTTATTACGGAAGAGACAT+GGG - chr3_1:82533538-82533557 None:intergenic 35.0%
!! ACAGATCCACTTTTCAATTC+TGG + chr3_1:82533758-82533777 Msa0380680:CDS 35.0%
TTCAGCATACCAACATTATC+GGG - chr3_1:82534106-82534125 None:intergenic 35.0%
ATTCCAACGGAAAAATGTTC+TGG + chr3_1:82534276-82534295 Msa0380680:CDS 35.0%
GATAGTCCAGTGAAAATGAA+TGG + chr3_1:82534303-82534322 Msa0380680:CDS 35.0%
AACAAAATGAGTGGTCGAAT+TGG + chr3_1:82534423-82534442 Msa0380680:CDS 35.0%
! ATTAAGCATCGTCTTGATGA+AGG + chr3_1:82534606-82534625 Msa0380680:CDS 35.0%
! TTAAGCATCGTCTTGATGAA+GGG + chr3_1:82534607-82534626 Msa0380680:CDS 35.0%
GCTTATGGGTTCAATTGTAA+TGG + chr3_1:82534669-82534688 Msa0380680:CDS 35.0%
GATACCAAGATTGAGACATT+CGG - chr3_1:82533452-82533471 None:intergenic 35.0%
GTTTATTACGGAAGAGACAT+GGG - chr3_1:82533538-82533557 None:intergenic 35.0%
!! ACAGATCCACTTTTCAATTC+TGG + chr3_1:82533758-82533777 Msa0380680:CDS 35.0%
TTCAGCATACCAACATTATC+GGG - chr3_1:82534106-82534125 None:intergenic 35.0%
ATTCCAACGGAAAAATGTTC+TGG + chr3_1:82534276-82534295 Msa0380680:CDS 35.0%
GATAGTCCAGTGAAAATGAA+TGG + chr3_1:82534303-82534322 Msa0380680:CDS 35.0%
AACAAAATGAGTGGTCGAAT+TGG + chr3_1:82534423-82534442 Msa0380680:CDS 35.0%
! ATTAAGCATCGTCTTGATGA+AGG + chr3_1:82534606-82534625 Msa0380680:CDS 35.0%
! TTAAGCATCGTCTTGATGAA+GGG + chr3_1:82534607-82534626 Msa0380680:CDS 35.0%
GCTTATGGGTTCAATTGTAA+TGG + chr3_1:82534669-82534688 Msa0380680:CDS 35.0%
ACATTCGGTAAGAAGCTGTT+TGG - chr3_1:82533437-82533456 None:intergenic 40.0%
CTTACCGAATGTCTCAATCT+TGG + chr3_1:82533445-82533464 Msa0380680:CDS 40.0%
GGTTTATTACGGAAGAGACA+TGG - chr3_1:82533539-82533558 None:intergenic 40.0%
GATGGTAACAAGAGAAGATG+TGG + chr3_1:82533836-82533855 Msa0380680:CDS 40.0%
!! AGAAGATGTGGTGCTATATC+TGG + chr3_1:82533848-82533867 Msa0380680:CDS 40.0%
! AGAGATTGGATTTTTCACGG+TGG - chr3_1:82533879-82533898 None:intergenic 40.0%
!! AGAAGAATTTGCTAGGGAAC+AGG + chr3_1:82533955-82533974 Msa0380680:CDS 40.0%
TTCATCACTCCCGATAATGT+TGG + chr3_1:82534094-82534113 Msa0380680:CDS 40.0%
! GTTCCAGAACATTTTTCCGT+TGG - chr3_1:82534282-82534301 None:intergenic 40.0%
! ATTGGTGATTCACCTCTCAT+AGG + chr3_1:82534441-82534460 Msa0380680:CDS 40.0%
ACTTATGCATGTGATGTGTG+TGG + chr3_1:82534471-82534490 Msa0380680:CDS 40.0%
GTTATGGAGTACAAAGGCTA+TGG + chr3_1:82534558-82534577 Msa0380680:CDS 40.0%
TGTGTCTAATAAGGGTGAAG+TGG + chr3_1:82534647-82534666 Msa0380680:CDS 40.0%
AATAAGGGTGAAGTGGCTTA+TGG + chr3_1:82534654-82534673 Msa0380680:CDS 40.0%
ATAAGGGTGAAGTGGCTTAT+GGG + chr3_1:82534655-82534674 Msa0380680:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr3_1:82534722-82534741 Msa0380680:CDS 40.0%
ACATTCGGTAAGAAGCTGTT+TGG - chr3_1:82533437-82533456 None:intergenic 40.0%
CTTACCGAATGTCTCAATCT+TGG + chr3_1:82533445-82533464 Msa0380680:CDS 40.0%
GGTTTATTACGGAAGAGACA+TGG - chr3_1:82533539-82533558 None:intergenic 40.0%
GATGGTAACAAGAGAAGATG+TGG + chr3_1:82533836-82533855 Msa0380680:CDS 40.0%
!! AGAAGATGTGGTGCTATATC+TGG + chr3_1:82533848-82533867 Msa0380680:CDS 40.0%
! AGAGATTGGATTTTTCACGG+TGG - chr3_1:82533879-82533898 None:intergenic 40.0%
!! AGAAGAATTTGCTAGGGAAC+AGG + chr3_1:82533955-82533974 Msa0380680:CDS 40.0%
TTCATCACTCCCGATAATGT+TGG + chr3_1:82534094-82534113 Msa0380680:CDS 40.0%
! GTTCCAGAACATTTTTCCGT+TGG - chr3_1:82534282-82534301 None:intergenic 40.0%
! ATTGGTGATTCACCTCTCAT+AGG + chr3_1:82534441-82534460 Msa0380680:CDS 40.0%
ACTTATGCATGTGATGTGTG+TGG + chr3_1:82534471-82534490 Msa0380680:CDS 40.0%
GTTATGGAGTACAAAGGCTA+TGG + chr3_1:82534558-82534577 Msa0380680:CDS 40.0%
TGTGTCTAATAAGGGTGAAG+TGG + chr3_1:82534647-82534666 Msa0380680:CDS 40.0%
AATAAGGGTGAAGTGGCTTA+TGG + chr3_1:82534654-82534673 Msa0380680:CDS 40.0%
ATAAGGGTGAAGTGGCTTAT+GGG + chr3_1:82534655-82534674 Msa0380680:CDS 40.0%
GTTCATGGAGGTTGGAATTT+GGG + chr3_1:82534722-82534741 Msa0380680:CDS 40.0%
TGACGGTGTGTTGGAAGATT+AGG - chr3_1:82533406-82533425 None:intergenic 45.0%
TAATCTTCCAACACACCGTC+AGG + chr3_1:82533405-82533424 Msa0380680:CDS 45.0%
TGCTCTGACAGCAAAAGGAA+CGG + chr3_1:82533790-82533809 Msa0380680:CDS 45.0%
AGCAAAAGGAACGGTGGAAA+TGG + chr3_1:82533799-82533818 Msa0380680:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr3_1:82533802-82533821 Msa0380680:CDS 45.0%
GGAAATGGAGGCTAGTATCA+TGG + chr3_1:82533814-82533833 Msa0380680:CDS 45.0%
ATGGAGGCTAGTATCATGGA+TGG + chr3_1:82533818-82533837 Msa0380680:CDS 45.0%
ACAAGACGAGCAAGAGAGAT+TGG - chr3_1:82533893-82533912 None:intergenic 45.0%
AGAAGGCGAGGTAAGAATGA+GGG - chr3_1:82533928-82533947 None:intergenic 45.0%
AAATTCTTCTGCACCGGAGA+AGG - chr3_1:82533945-82533964 None:intergenic 45.0%
CCTAGCAAATTCTTCTGCAC+CGG - chr3_1:82533951-82533970 None:intergenic 45.0%
!! CGGTGCAGAAGAATTTGCTA+GGG + chr3_1:82533949-82533968 Msa0380680:CDS 45.0%
!!! GTCATGTTTTTTCTAGGGCG+TGG + chr3_1:82534051-82534070 Msa0380680:intron 45.0%
TGGTATGCTGAAACTCGCAA+AGG + chr3_1:82534114-82534133 Msa0380680:CDS 45.0%
! TGAATGTGTTTGATGGACGG+TGG + chr3_1:82534236-82534255 Msa0380680:intron 45.0%
! GGCAGACCATTCATTTTCAC+TGG - chr3_1:82534312-82534331 None:intergenic 45.0%
GGGCTGATGAACAAAATGAG+TGG + chr3_1:82534414-82534433 Msa0380680:CDS 45.0%
TAAGTTCCAGCACCTATGAG+AGG - chr3_1:82534456-82534475 None:intergenic 45.0%
GAAGGTGAAGCTATCATTCG+TGG + chr3_1:82534510-82534529 Msa0380680:CDS 45.0%
GCTGCAGTTATGGAGTACAA+AGG + chr3_1:82534552-82534571 Msa0380680:CDS 45.0%
CTATGGACTTCAACAAGCAG+TGG + chr3_1:82534575-82534594 Msa0380680:CDS 45.0%
! TGCAACTGAGAATGGGTTCA+TGG + chr3_1:82534707-82534726 Msa0380680:CDS 45.0%
! AACTGAGAATGGGTTCATGG+AGG + chr3_1:82534710-82534729 Msa0380680:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr3_1:82534721-82534740 Msa0380680:CDS 45.0%
TGACGGTGTGTTGGAAGATT+AGG - chr3_1:82533406-82533425 None:intergenic 45.0%
TAATCTTCCAACACACCGTC+AGG + chr3_1:82533405-82533424 Msa0380680:CDS 45.0%
TGCTCTGACAGCAAAAGGAA+CGG + chr3_1:82533790-82533809 Msa0380680:CDS 45.0%
AGCAAAAGGAACGGTGGAAA+TGG + chr3_1:82533799-82533818 Msa0380680:CDS 45.0%
AAAAGGAACGGTGGAAATGG+AGG + chr3_1:82533802-82533821 Msa0380680:CDS 45.0%
GGAAATGGAGGCTAGTATCA+TGG + chr3_1:82533814-82533833 Msa0380680:CDS 45.0%
ATGGAGGCTAGTATCATGGA+TGG + chr3_1:82533818-82533837 Msa0380680:CDS 45.0%
ACAAGACGAGCAAGAGAGAT+TGG - chr3_1:82533893-82533912 None:intergenic 45.0%
AGAAGGCGAGGTAAGAATGA+GGG - chr3_1:82533928-82533947 None:intergenic 45.0%
AAATTCTTCTGCACCGGAGA+AGG - chr3_1:82533945-82533964 None:intergenic 45.0%
CCTAGCAAATTCTTCTGCAC+CGG - chr3_1:82533951-82533970 None:intergenic 45.0%
!! CGGTGCAGAAGAATTTGCTA+GGG + chr3_1:82533949-82533968 Msa0380680:CDS 45.0%
!!! GTCATGTTTTTTCTAGGGCG+TGG + chr3_1:82534051-82534070 Msa0380680:intron 45.0%
TGGTATGCTGAAACTCGCAA+AGG + chr3_1:82534114-82534133 Msa0380680:CDS 45.0%
! TGAATGTGTTTGATGGACGG+TGG + chr3_1:82534236-82534255 Msa0380680:intron 45.0%
! GGCAGACCATTCATTTTCAC+TGG - chr3_1:82534312-82534331 None:intergenic 45.0%
GGGCTGATGAACAAAATGAG+TGG + chr3_1:82534414-82534433 Msa0380680:CDS 45.0%
TAAGTTCCAGCACCTATGAG+AGG - chr3_1:82534456-82534475 None:intergenic 45.0%
GAAGGTGAAGCTATCATTCG+TGG + chr3_1:82534510-82534529 Msa0380680:CDS 45.0%
GCTGCAGTTATGGAGTACAA+AGG + chr3_1:82534552-82534571 Msa0380680:CDS 45.0%
CTATGGACTTCAACAAGCAG+TGG + chr3_1:82534575-82534594 Msa0380680:CDS 45.0%
! TGCAACTGAGAATGGGTTCA+TGG + chr3_1:82534707-82534726 Msa0380680:CDS 45.0%
! AACTGAGAATGGGTTCATGG+AGG + chr3_1:82534710-82534729 Msa0380680:CDS 45.0%
GGTTCATGGAGGTTGGAATT+TGG + chr3_1:82534721-82534740 Msa0380680:CDS 45.0%
!!! AATAATATAATTTTTTAATC+CGG + chr3_1:82533658-82533677 Msa0380680:intron 5.0%
!!! AATAATATAATTTTTTAATC+CGG + chr3_1:82533658-82533677 Msa0380680:intron 5.0%
! GGTTGGGCTATTGCTGTTCA+TGG + chr3_1:82533364-82533383 Msa0380680:CDS 50.0%
! TGGGCTATTGCTGTTCATGG+CGG + chr3_1:82533367-82533386 Msa0380680:CDS 50.0%
! GCTGTTTGGCTTCTTCCTGA+CGG - chr3_1:82533423-82533442 None:intergenic 50.0%
CCACGGCCAGAATTGAAAAG+TGG - chr3_1:82533767-82533786 None:intergenic 50.0%
!! CCACTTTTCAATTCTGGCCG+TGG + chr3_1:82533764-82533783 Msa0380680:CDS 50.0%
TTGCTGTCAGAGCAGATCCA+CGG - chr3_1:82533784-82533803 None:intergenic 50.0%
GGATCTGCTCTGACAGCAAA+AGG + chr3_1:82533785-82533804 Msa0380680:CDS 50.0%
TCTGACAGCAAAAGGAACGG+TGG + chr3_1:82533793-82533812 Msa0380680:CDS 50.0%
CTCTCTTGCTCGTCTTGTCA+TGG + chr3_1:82533895-82533914 Msa0380680:CDS 50.0%
GAAGGCGAGGTAAGAATGAG+GGG - chr3_1:82533927-82533946 None:intergenic 50.0%
GAGAAGGCGAGGTAAGAATG+AGG - chr3_1:82533929-82533948 None:intergenic 50.0%
CATTCTTACCTCGCCTTCTC+CGG + chr3_1:82533929-82533948 Msa0380680:CDS 50.0%
! CCGGTGCAGAAGAATTTGCT+AGG + chr3_1:82533948-82533967 Msa0380680:CDS 50.0%
GATTCACCTCTCATAGGTGC+TGG + chr3_1:82534447-82534466 Msa0380680:CDS 50.0%
GTGTGTGGAGTTTCATGCAC+TGG + chr3_1:82534486-82534505 Msa0380680:CDS 50.0%
! GGAGTTTCATGCACTGGTGA+AGG + chr3_1:82534492-82534511 Msa0380680:CDS 50.0%
ACGTGAAGTGGCTGCAGTTA+TGG + chr3_1:82534542-82534561 Msa0380680:CDS 50.0%
CGTCTTGATGAAGGGTTTGC+TGG + chr3_1:82534615-82534634 Msa0380680:CDS 50.0%
AGGGGATGTGCAACTGAGAA+TGG + chr3_1:82534699-82534718 Msa0380680:CDS 50.0%
GGGGATGTGCAACTGAGAAT+GGG + chr3_1:82534700-82534719 Msa0380680:CDS 50.0%
! GAGAATGGGTTCATGGAGGT+TGG + chr3_1:82534714-82534733 Msa0380680:CDS 50.0%
! GGTTGGGCTATTGCTGTTCA+TGG + chr3_1:82533364-82533383 Msa0380680:CDS 50.0%
! TGGGCTATTGCTGTTCATGG+CGG + chr3_1:82533367-82533386 Msa0380680:CDS 50.0%
! GCTGTTTGGCTTCTTCCTGA+CGG - chr3_1:82533423-82533442 None:intergenic 50.0%
CCACGGCCAGAATTGAAAAG+TGG - chr3_1:82533767-82533786 None:intergenic 50.0%
!! CCACTTTTCAATTCTGGCCG+TGG + chr3_1:82533764-82533783 Msa0380680:CDS 50.0%
TTGCTGTCAGAGCAGATCCA+CGG - chr3_1:82533784-82533803 None:intergenic 50.0%
GGATCTGCTCTGACAGCAAA+AGG + chr3_1:82533785-82533804 Msa0380680:CDS 50.0%
TCTGACAGCAAAAGGAACGG+TGG + chr3_1:82533793-82533812 Msa0380680:CDS 50.0%
CTCTCTTGCTCGTCTTGTCA+TGG + chr3_1:82533895-82533914 Msa0380680:CDS 50.0%
GAAGGCGAGGTAAGAATGAG+GGG - chr3_1:82533927-82533946 None:intergenic 50.0%
GAGAAGGCGAGGTAAGAATG+AGG - chr3_1:82533929-82533948 None:intergenic 50.0%
CATTCTTACCTCGCCTTCTC+CGG + chr3_1:82533929-82533948 Msa0380680:CDS 50.0%
! CCGGTGCAGAAGAATTTGCT+AGG + chr3_1:82533948-82533967 Msa0380680:CDS 50.0%
GATTCACCTCTCATAGGTGC+TGG + chr3_1:82534447-82534466 Msa0380680:CDS 50.0%
GTGTGTGGAGTTTCATGCAC+TGG + chr3_1:82534486-82534505 Msa0380680:CDS 50.0%
! GGAGTTTCATGCACTGGTGA+AGG + chr3_1:82534492-82534511 Msa0380680:CDS 50.0%
ACGTGAAGTGGCTGCAGTTA+TGG + chr3_1:82534542-82534561 Msa0380680:CDS 50.0%
CGTCTTGATGAAGGGTTTGC+TGG + chr3_1:82534615-82534634 Msa0380680:CDS 50.0%
AGGGGATGTGCAACTGAGAA+TGG + chr3_1:82534699-82534718 Msa0380680:CDS 50.0%
GGGGATGTGCAACTGAGAAT+GGG + chr3_1:82534700-82534719 Msa0380680:CDS 50.0%
! GAGAATGGGTTCATGGAGGT+TGG + chr3_1:82534714-82534733 Msa0380680:CDS 50.0%
GCTTCTTCCTGACGGTGTGT+TGG - chr3_1:82533415-82533434 None:intergenic 55.0%
!! CGAGTGCGGAAGCATTGGAT+CGG - chr3_1:82533483-82533502 None:intergenic 55.0%
AAGTTCGACGACGTCGAGTG+CGG - chr3_1:82533497-82533516 None:intergenic 55.0%
!! TTTCTAGGGCGTGGAGACTG+AGG + chr3_1:82534060-82534079 Msa0380680:intron 55.0%
TCCGGCGCGTAAATGCTCAT+CGG - chr3_1:82534333-82534352 None:intergenic 55.0%
!! TGTGTGGTGGTGGACAGTCA+AGG + chr3_1:82534363-82534382 Msa0380680:CDS 55.0%
! TGTGCTGCTGCAACCTCAAC+TGG + chr3_1:82534390-82534409 Msa0380680:CDS 55.0%
CTGCTGCAACCTCAACTGGA+GGG + chr3_1:82534394-82534413 Msa0380680:CDS 55.0%
GTTCATCAGCCCTCCAGTTG+AGG - chr3_1:82534406-82534425 None:intergenic 55.0%
TGGCACTCTTGCACGTGAAG+TGG + chr3_1:82534530-82534549 Msa0380680:CDS 55.0%
GCTTCTTCCTGACGGTGTGT+TGG - chr3_1:82533415-82533434 None:intergenic 55.0%
!! CGAGTGCGGAAGCATTGGAT+CGG - chr3_1:82533483-82533502 None:intergenic 55.0%
AAGTTCGACGACGTCGAGTG+CGG - chr3_1:82533497-82533516 None:intergenic 55.0%
!! TTTCTAGGGCGTGGAGACTG+AGG + chr3_1:82534060-82534079 Msa0380680:intron 55.0%
TCCGGCGCGTAAATGCTCAT+CGG - chr3_1:82534333-82534352 None:intergenic 55.0%
!! TGTGTGGTGGTGGACAGTCA+AGG + chr3_1:82534363-82534382 Msa0380680:CDS 55.0%
! TGTGCTGCTGCAACCTCAAC+TGG + chr3_1:82534390-82534409 Msa0380680:CDS 55.0%
CTGCTGCAACCTCAACTGGA+GGG + chr3_1:82534394-82534413 Msa0380680:CDS 55.0%
GTTCATCAGCCCTCCAGTTG+AGG - chr3_1:82534406-82534425 None:intergenic 55.0%
TGGCACTCTTGCACGTGAAG+TGG + chr3_1:82534530-82534549 Msa0380680:CDS 55.0%
! ATTGCTGTTCATGGCGGCGC+TGG + chr3_1:82533373-82533392 Msa0380680:CDS 60.0%
! GACGTCGAGTGCGGAAGCAT+TGG - chr3_1:82533488-82533507 None:intergenic 60.0%
GCCGATGAGCATTTACGCGC+CGG + chr3_1:82534329-82534348 Msa0380680:CDS 60.0%
ATTTACGCGCCGGAGACCGT+CGG + chr3_1:82534339-82534358 Msa0380680:CDS 60.0%
ACCACACATCCGACGGTCTC+CGG - chr3_1:82534351-82534370 None:intergenic 60.0%
GTCCACCACCACACATCCGA+CGG - chr3_1:82534358-82534377 None:intergenic 60.0%
GCTGCTGCAACCTCAACTGG+AGG + chr3_1:82534393-82534412 Msa0380680:CDS 60.0%
! ATTGCTGTTCATGGCGGCGC+TGG + chr3_1:82533373-82533392 Msa0380680:CDS 60.0%
! GACGTCGAGTGCGGAAGCAT+TGG - chr3_1:82533488-82533507 None:intergenic 60.0%
GCCGATGAGCATTTACGCGC+CGG + chr3_1:82534329-82534348 Msa0380680:CDS 60.0%
ATTTACGCGCCGGAGACCGT+CGG + chr3_1:82534339-82534358 Msa0380680:CDS 60.0%
ACCACACATCCGACGGTCTC+CGG - chr3_1:82534351-82534370 None:intergenic 60.0%
GTCCACCACCACACATCCGA+CGG - chr3_1:82534358-82534377 None:intergenic 60.0%
GCTGCTGCAACCTCAACTGG+AGG + chr3_1:82534393-82534412 Msa0380680:CDS 60.0%
!! TGTTCATGGCGGCGCTGGTG+TGG + chr3_1:82533378-82533397 Msa0380680:CDS 65.0%
CTTCTGCACCGGAGAAGGCG+AGG - chr3_1:82533940-82533959 None:intergenic 65.0%
GGAGACCGTCGGATGTGTGG+TGG + chr3_1:82534350-82534369 Msa0380680:CDS 65.0%
GACCGTCGGATGTGTGGTGG+TGG + chr3_1:82534353-82534372 Msa0380680:CDS 65.0%
!! TGTTCATGGCGGCGCTGGTG+TGG + chr3_1:82533378-82533397 Msa0380680:CDS 65.0%
CTTCTGCACCGGAGAAGGCG+AGG - chr3_1:82533940-82533959 None:intergenic 65.0%
GGAGACCGTCGGATGTGTGG+TGG + chr3_1:82534350-82534369 Msa0380680:CDS 65.0%
GACCGTCGGATGTGTGGTGG+TGG + chr3_1:82534353-82534372 Msa0380680:CDS 65.0%
GCCGGAGACCGTCGGATGTG+TGG + chr3_1:82534347-82534366 Msa0380680:CDS 70.0%
GCCGGAGACCGTCGGATGTG+TGG + chr3_1:82534347-82534366 Msa0380680:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82533358 82534749 82533358 ID=Msa0380680;Name=Msa0380680
chr3_1 mRNA 82533358 82534749 82533358 ID=Msa0380680-mRNA-1;Parent=Msa0380680;Name=Msa0380680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|322
chr3_1 exon 82533358 82533519 82533358 ID=Msa0380680-mRNA-1:exon:21059;Parent=Msa0380680-mRNA-1
chr3_1 exon 82533743 82533976 82533743 ID=Msa0380680-mRNA-1:exon:21060;Parent=Msa0380680-mRNA-1
chr3_1 exon 82534067 82534153 82534067 ID=Msa0380680-mRNA-1:exon:21061;Parent=Msa0380680-mRNA-1
chr3_1 exon 82534264 82534749 82534264 ID=Msa0380680-mRNA-1:exon:21062;Parent=Msa0380680-mRNA-1
chr3_1 CDS 82533358 82533519 82533358 ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1
chr3_1 CDS 82533743 82533976 82533743 ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1
chr3_1 CDS 82534067 82534153 82534067 ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1
chr3_1 CDS 82534264 82534749 82534264 ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1
Gene Sequence

>Msa0380680

ATGTCTGGTTGGGCTATTGCTGTTCATGGCGGCGCTGGTGTGGATCCTAATCTTCCAACACACCGTCAGGAAGAAGCCAAACAGCTTCTTACCGAATGTCTCAATCTTGGTATCTCTGCTCTCCGATCCAATGCTTCCGCACTCGACGTCGTCGAACTTGTCGTGAGAAAGTTAGAAACAGATCCACTTTTCAATTCTGGCCGTGGATCTGCTCTGACAGCAAAAGGAACGGTGGAAATGGAGGCTAGTATCATGGATGGTAACAAGAGAAGATGTGGTGCTATATCTGGTGTTTCCACCGTGAAAAATCCAATCTCTCTTGCTCGTCTTGTCATGGAAAAATCCCCTCATTCTTACCTCGCCTTCTCCGGTGCAGAAGAATTTGCTAGGGAACAGGGCGTGGAGACTGAGGACAATGAATATTTCATCACTCCCGATAATGTTGGTATGCTGAAACTCGCAAAGGAAGCTAATACAATATTGTTTGATTATCGAATTCCAACGGAAAAATGTTCTGGAACTGATAGTCCAGTGAAAATGAATGGTCTGCCGATGAGCATTTACGCGCCGGAGACCGTCGGATGTGTGGTGGTGGACAGTCAAGGAAGATGTGCTGCTGCAACCTCAACTGGAGGGCTGATGAACAAAATGAGTGGTCGAATTGGTGATTCACCTCTCATAGGTGCTGGAACTTATGCATGTGATGTGTGTGGAGTTTCATGCACTGGTGAAGGTGAAGCTATCATTCGTGGCACTCTTGCACGTGAAGTGGCTGCAGTTATGGAGTACAAAGGCTATGGACTTCAACAAGCAGTGGATTTTGTGATTAAGCATCGTCTTGATGAAGGGTTTGCTGGTCTTATTGCTGTGTCTAATAAGGGTGAAGTGGCTTATGGGTTCAATTGTAATGGAATGTTTAGGGGATGTGCAACTGAGAATGGGTTCATGGAGGTTGGAATTTGGGAATGA

Protein sequence

>Msa0380680

MSGWAIAVHGGAGVDPNLPTHRQEEAKQLLTECLNLGISALRSNASALDVVELVVRKLETDPLFNSGRGSALTAKGTVEMEASIMDGNKRRCGAISGVSTVKNPISLARLVMEKSPHSYLAFSGAEEFAREQGVETEDNEYFITPDNVGMLKLAKEANTILFDYRIPTEKCSGTDSPVKMNGLPMSIYAPETVGCVVVDSQGRCAAATSTGGLMNKMSGRIGDSPLIGAGTYACDVCGVSCTGEGEAIIRGTLAREVAAVMEYKGYGLQQAVDFVIKHRLDEGFAGLIAVSNKGEVAYGFNCNGMFRGCATENGFMEVGIWE*