Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0380680 | XP_003603098.1 | 96.273 | 322 | 12 | 0 | 1 | 322 | 1 | 322 | 0.0 | 641 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0380680 | sp|Q8GXG1|ASPGB_ARATH | 83.692 | 325 | 50 | 1 | 1 | 322 | 1 | 325 | 0.0 | 564 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0380680 | G7J705 | 96.273 | 322 | 12 | 0 | 1 | 322 | 1 | 322 | 0.0 | 641 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0010150 | Msa0380680 | 0.838727 | 2.421845e-57 | -8.615850e-47 |
Msa0024280 | Msa0380680 | 0.827943 | 1.183196e-54 | -8.615850e-47 |
Msa0027860 | Msa0380680 | 0.828048 | 1.116465e-54 | -8.615850e-47 |
Msa0040210 | Msa0380680 | 0.820459 | 6.782440e-53 | -8.615850e-47 |
Msa0043120 | Msa0380680 | 0.809144 | 2.187872e-50 | -8.615850e-47 |
Msa0048950 | Msa0380680 | 0.805162 | 1.524648e-49 | -8.615850e-47 |
Msa0059880 | Msa0380680 | 0.862040 | 6.712912e-64 | -8.615850e-47 |
Msa0060380 | Msa0380680 | 0.810893 | 9.191100e-51 | -8.615850e-47 |
Msa0063540 | Msa0380680 | 0.804633 | 1.967003e-49 | -8.615850e-47 |
Msa0075560 | Msa0380680 | 0.804960 | 1.681033e-49 | -8.615850e-47 |
Msa0108350 | Msa0380680 | 0.805622 | 1.221279e-49 | -8.615850e-47 |
Msa0120050 | Msa0380680 | 0.833773 | 4.398166e-56 | -8.615850e-47 |
Msa0123530 | Msa0380680 | 0.827011 | 1.979674e-54 | -8.615850e-47 |
Msa0140270 | Msa0380680 | 0.934881 | 2.028221e-96 | -8.615850e-47 |
Msa0142560 | Msa0380680 | 0.819866 | 9.274744e-53 | -8.615850e-47 |
Msa0144010 | Msa0380680 | 0.804684 | 1.919716e-49 | -8.615850e-47 |
Msa0150910 | Msa0380680 | 0.876481 | 1.349056e-68 | -8.615850e-47 |
Msa0150920 | Msa0380680 | 0.806838 | 6.771888e-50 | -8.615850e-47 |
Msa0163340 | Msa0380680 | 0.850718 | 1.416547e-60 | -8.615850e-47 |
Msa0168010 | Msa0380680 | 0.815592 | 8.544401e-52 | -8.615850e-47 |
Msa0177260 | Msa0380680 | 0.803325 | 3.678627e-49 | -8.615850e-47 |
Msa0190670 | Msa0380680 | 0.870988 | 9.622004e-67 | -8.615850e-47 |
Msa0190890 | Msa0380680 | 0.815322 | 9.811341e-52 | -8.615850e-47 |
Msa0195580 | Msa0380680 | 0.809385 | 1.942405e-50 | -8.615850e-47 |
Msa0196260 | Msa0380680 | 0.805625 | 1.219350e-49 | -8.615850e-47 |
Msa0207640 | Msa0380680 | 0.818577 | 1.823021e-52 | -8.615850e-47 |
Msa0209060 | Msa0380680 | 0.817851 | 2.661546e-52 | -8.615850e-47 |
Msa0212550 | Msa0380680 | 0.816460 | 5.467451e-52 | -8.615850e-47 |
Msa0220090 | Msa0380680 | 0.811226 | 7.783055e-51 | -8.615850e-47 |
Msa0225070 | Msa0380680 | -0.803009 | 4.276089e-49 | -8.615850e-47 |
Msa0232990 | Msa0380680 | 0.807458 | 5.005988e-50 | -8.615850e-47 |
Msa0238110 | Msa0380680 | 0.815882 | 7.359706e-52 | -8.615850e-47 |
Msa0374040 | Msa0380680 | 0.809010 | 2.337161e-50 | -8.615850e-47 |
Msa0380680 | Msa0390170 | 0.800540 | 1.373893e-48 | -8.615850e-47 |
Msa0380680 | Msa0414480 | 0.824256 | 8.908485e-54 | -8.615850e-47 |
Msa0380680 | Msa0420890 | 0.805521 | 1.282438e-49 | -8.615850e-47 |
Msa0380680 | Msa0430320 | 0.920970 | 6.506719e-88 | -8.615850e-47 |
Msa0380680 | Msa0430460 | 0.916578 | 1.504484e-85 | -8.615850e-47 |
Msa0380680 | Msa0439000 | 0.805679 | 1.188160e-49 | -8.615850e-47 |
Msa0380680 | Msa0447160 | 0.804079 | 2.565730e-49 | -8.615850e-47 |
Msa0380680 | Msa0449480 | 0.800389 | 1.474665e-48 | -8.615850e-47 |
Msa0380680 | Msa0464310 | 0.821588 | 3.727217e-53 | -8.615850e-47 |
Msa0380680 | Msa0472390 | 0.817697 | 2.883060e-52 | -8.615850e-47 |
Msa0380680 | Msa0490060 | 0.824350 | 8.463741e-54 | -8.615850e-47 |
Msa0380680 | Msa0491770 | 0.802488 | 5.478910e-49 | -8.615850e-47 |
Msa0380680 | Msa0535570 | 0.821600 | 3.704952e-53 | -8.615850e-47 |
Msa0380680 | Msa0538440 | 0.803489 | 3.402743e-49 | -8.615850e-47 |
Msa0380680 | Msa0538450 | 0.829961 | 3.840416e-55 | -8.615850e-47 |
Msa0380680 | Msa0538520 | 0.823696 | 1.205660e-53 | -8.615850e-47 |
Msa0380680 | Msa0543740 | 0.803882 | 2.819574e-49 | -8.615850e-47 |
Msa0380680 | Msa0548790 | 0.819007 | 1.455563e-52 | -8.615850e-47 |
Msa0380680 | Msa0549170 | 0.800944 | 1.136159e-48 | -8.615850e-47 |
Msa0380680 | Msa0549920 | 0.807056 | 6.091364e-50 | -8.615850e-47 |
Msa0380680 | Msa0555920 | 0.824854 | 6.440170e-54 | -8.615850e-47 |
Msa0380680 | Msa0584370 | 0.809981 | 1.446529e-50 | -8.615850e-47 |
Msa0380680 | Msa0587730 | 0.805989 | 1.022794e-49 | -8.615850e-47 |
Msa0380680 | Msa0591490 | 0.827102 | 1.883064e-54 | -8.615850e-47 |
Msa0380680 | Msa0594320 | 0.812983 | 3.221369e-51 | -8.615850e-47 |
Msa0380680 | Msa0602050 | 0.818229 | 2.185571e-52 | -8.615850e-47 |
Msa0380680 | Msa0609460 | 0.827103 | 1.881789e-54 | -8.615850e-47 |
Msa0380680 | Msa0614960 | 0.800385 | 1.477268e-48 | -8.615850e-47 |
Msa0380680 | Msa0616300 | 0.825192 | 5.360782e-54 | -8.615850e-47 |
Msa0380680 | Msa0619300 | 0.800929 | 1.144253e-48 | -8.615850e-47 |
Msa0380680 | Msa0634290 | 0.813318 | 2.719218e-51 | -8.615850e-47 |
Msa0380680 | Msa0643840 | 0.824640 | 7.232877e-54 | -8.615850e-47 |
Msa0380680 | Msa0645380 | 0.824778 | 6.712153e-54 | -8.615850e-47 |
Msa0380680 | Msa0650100 | 0.812271 | 4.609837e-51 | -8.615850e-47 |
Msa0380680 | Msa0651820 | 0.808960 | 2.396064e-50 | -8.615850e-47 |
Msa0380680 | Msa0668220 | 0.807176 | 5.744322e-50 | -8.615850e-47 |
Msa0380680 | Msa0670360 | 0.838684 | 2.485191e-57 | -8.615850e-47 |
Msa0380680 | Msa0671640 | 0.813487 | 2.496404e-51 | -8.615850e-47 |
Msa0380680 | Msa0692090 | 0.816760 | 4.682896e-52 | -8.615850e-47 |
Msa0380680 | Msa0711240 | 0.812569 | 3.968805e-51 | -8.615850e-47 |
Msa0380680 | Msa0711260 | 0.827427 | 1.574378e-54 | -8.615850e-47 |
Msa0380680 | Msa0727480 | 0.848072 | 7.736422e-60 | -8.615850e-47 |
Msa0380680 | Msa0735140 | 0.802193 | 6.300595e-49 | -8.615850e-47 |
Msa0380680 | Msa0735280 | 0.805476 | 1.310522e-49 | -8.615850e-47 |
Msa0380680 | Msa0741170 | 0.803697 | 3.081150e-49 | -8.615850e-47 |
Msa0380680 | Msa0750790 | 0.809287 | 2.038681e-50 | -8.615850e-47 |
Msa0380680 | Msa0751960 | 0.817391 | 3.379312e-52 | -8.615850e-47 |
Msa0380680 | Msa0768670 | 0.848012 | 8.035354e-60 | -8.615850e-47 |
Msa0380680 | Msa0768720 | 0.847889 | 8.687286e-60 | -8.615850e-47 |
Msa0380680 | Msa0777070 | 0.827279 | 1.707976e-54 | -8.615850e-47 |
Msa0380680 | Msa0777250 | 0.820420 | 6.923934e-53 | -8.615850e-47 |
Msa0380680 | Msa0786940 | 0.835332 | 1.785018e-56 | -8.615850e-47 |
Msa0380680 | Msa0787860 | 0.803902 | 2.792576e-49 | -8.615850e-47 |
Msa0380680 | Msa0789220 | 0.812037 | 5.184740e-51 | -8.615850e-47 |
Msa0380680 | Msa0794240 | 0.832352 | 9.925982e-56 | -8.615850e-47 |
Msa0380680 | Msa0806930 | 0.838846 | 2.255801e-57 | -8.615850e-47 |
Msa0380680 | Msa0814160 | 0.838857 | 2.241626e-57 | -8.615850e-47 |
Msa0380680 | Msa0814230 | 0.837388 | 5.352663e-57 | -8.615850e-47 |
Msa0380680 | Msa0822410 | 0.830651 | 2.604894e-55 | -8.615850e-47 |
Msa0380680 | Msa0831890 | 0.832019 | 1.200452e-55 | -8.615850e-47 |
Msa0380680 | Msa0854160 | 0.804793 | 1.821744e-49 | -8.615850e-47 |
Msa0380680 | Msa0854840 | 0.819173 | 1.334952e-52 | -8.615850e-47 |
Msa0380680 | Msa0861730 | 0.859333 | 4.448114e-63 | -8.615850e-47 |
Msa0380680 | Msa0861820 | 0.824889 | 6.318805e-54 | -8.615850e-47 |
Msa0380680 | Msa0864160 | 0.808330 | 3.265581e-50 | -8.615850e-47 |
Msa0380680 | Msa0876600 | 0.805615 | 1.225211e-49 | -8.615850e-47 |
Msa0380680 | Msa0883640 | 0.800750 | 1.244625e-48 | -8.615850e-47 |
Msa0380680 | Msa0893840 | 0.810054 | 1.395047e-50 | -8.615850e-47 |
Msa0380680 | Msa0896910 | 0.801712 | 7.910730e-49 | -8.615850e-47 |
Msa0380680 | Msa0896920 | 0.835767 | 1.385599e-56 | -8.615850e-47 |
Msa0380680 | Msa0896950 | 0.827414 | 1.585600e-54 | -8.615850e-47 |
Msa0380680 | Msa0902340 | 0.805339 | 1.399888e-49 | -8.615850e-47 |
Msa0380680 | Msa0910830 | 0.831852 | 1.319729e-55 | -8.615850e-47 |
Msa0380680 | Msa0910890 | 0.800139 | 1.658269e-48 | -8.615850e-47 |
Msa0380680 | Msa0913550 | 0.860189 | 2.457158e-63 | -8.615850e-47 |
Msa0380680 | Msa0921180 | 0.810289 | 1.241432e-50 | -8.615850e-47 |
Msa0380680 | Msa0932150 | 0.804718 | 1.888494e-49 | -8.615850e-47 |
Msa0380680 | Msa0933590 | 0.808591 | 2.872166e-50 | -8.615850e-47 |
Msa0380680 | Msa0933610 | 0.803039 | 4.216982e-49 | -8.615850e-47 |
Msa0380680 | Msa0940780 | 0.802012 | 6.863681e-49 | -8.615850e-47 |
Msa0380680 | Msa0946010 | 0.825509 | 4.510359e-54 | -8.615850e-47 |
Msa0380680 | Msa0946310 | 0.810073 | 1.381903e-50 | -8.615850e-47 |
Msa0380680 | Msa0951150 | 0.859168 | 4.985840e-63 | -8.615850e-47 |
Msa0380680 | Msa0960090 | 0.804754 | 1.855816e-49 | -8.615850e-47 |
Msa0380680 | Msa0964510 | 0.800433 | 1.444785e-48 | -8.615850e-47 |
Msa0380680 | Msa0967900 | -0.804103 | 2.536153e-49 | -8.615850e-47 |
Msa0380680 | Msa0982560 | 0.800808 | 1.211332e-48 | -8.615850e-47 |
Msa0380680 | Msa0982900 | 0.803268 | 3.781234e-49 | -8.615850e-47 |
Msa0380680 | Msa0985700 | 0.801198 | 1.008176e-48 | -8.615850e-47 |
Msa0380680 | Msa0987020 | 0.813019 | 3.164060e-51 | -8.615850e-47 |
Msa0380680 | Msa0987640 | 0.857097 | 2.058210e-62 | -8.615850e-47 |
Msa0380680 | Msa0993450 | 0.828898 | 6.958656e-55 | -8.615850e-47 |
Msa0380680 | Msa0996980 | 0.806287 | 8.850150e-50 | -8.615850e-47 |
Msa0380680 | Msa1003110 | 0.812841 | 3.461164e-51 | -8.615850e-47 |
Msa0380680 | Msa1006030 | 0.800278 | 1.553192e-48 | -8.615850e-47 |
Msa0380680 | Msa1006170 | 0.839556 | 1.476335e-57 | -8.615850e-47 |
Msa0380680 | Msa1006220 | 0.838204 | 3.303314e-57 | -8.615850e-47 |
Msa0380680 | Msa1015560 | 0.802196 | 6.292231e-49 | -8.615850e-47 |
Msa0380680 | Msa1018590 | 0.841042 | 6.039628e-58 | -8.615850e-47 |
Msa0380680 | Msa1021620 | 0.856766 | 2.576371e-62 | -8.615850e-47 |
Msa0380680 | Msa1022580 | 0.833032 | 6.730909e-56 | -8.615850e-47 |
Msa0380680 | Msa1024350 | 0.838278 | 3.161331e-57 | -8.615850e-47 |
Msa0380680 | Msa1026050 | 0.815066 | 1.118176e-51 | -8.615850e-47 |
Msa0380680 | Msa1030070 | 0.816136 | 6.461139e-52 | -8.615850e-47 |
Msa0380680 | Msa1030320 | 0.812467 | 4.178090e-51 | -8.615850e-47 |
Msa0380680 | Msa1036590 | 0.802429 | 5.635220e-49 | -8.615850e-47 |
Msa0380680 | Msa1048350 | 0.813345 | 2.682543e-51 | -8.615850e-47 |
Msa0380680 | Msa1048400 | 0.810171 | 1.315946e-50 | -8.615850e-47 |
Msa0380680 | Msa1061670 | 0.813705 | 2.235819e-51 | -8.615850e-47 |
Msa0380680 | Msa1064940 | 0.803183 | 3.936765e-49 | -8.615850e-47 |
Msa0380680 | Msa1068080 | 0.816628 | 5.013581e-52 | -8.615850e-47 |
Msa0380680 | Msa1076830 | 0.810288 | 1.241959e-50 | -8.615850e-47 |
Msa0380680 | Msa1076900 | 0.806802 | 6.893150e-50 | -8.615850e-47 |
Msa0380680 | Msa1078090 | 0.804538 | 2.059268e-49 | -8.615850e-47 |
Msa0380680 | Msa1087380 | 0.820993 | 5.113093e-53 | -8.615850e-47 |
Msa0380680 | Msa1104960 | 0.809217 | 2.109950e-50 | -8.615850e-47 |
Msa0380680 | Msa1106680 | 0.800568 | 1.355852e-48 | -8.615850e-47 |
Msa0380680 | Msa1106960 | 0.813967 | 1.957323e-51 | -8.615850e-47 |
Msa0380680 | Msa1109880 | 0.837594 | 4.741181e-57 | -8.615850e-47 |
Msa0380680 | Msa1109890 | 0.822307 | 2.540905e-53 | -8.615850e-47 |
Msa0380680 | Msa1123250 | 0.805520 | 1.283118e-49 | -8.615850e-47 |
Msa0380680 | Msa1133860 | 0.804678 | 1.924895e-49 | -8.615850e-47 |
Msa0380680 | Msa1147030 | 0.802313 | 5.953219e-49 | -8.615850e-47 |
Msa0380680 | Msa1148210 | 0.833311 | 5.737059e-56 | -8.615850e-47 |
Msa0380680 | Msa1149020 | 0.816311 | 5.904187e-52 | -8.615850e-47 |
Msa0380680 | Msa1150150 | 0.803540 | 3.320384e-49 | -8.615850e-47 |
Msa0380680 | Msa1156240 | 0.834715 | 2.553207e-56 | -8.615850e-47 |
Msa0380680 | Msa1157210 | 0.813432 | 2.567069e-51 | -8.615850e-47 |
Msa0380680 | Msa1170320 | 0.812255 | 4.647067e-51 | -8.615850e-47 |
Msa0380680 | Msa1170340 | 0.811827 | 5.760615e-51 | -8.615850e-47 |
Msa0380680 | Msa1179340 | 0.803799 | 2.934381e-49 | -8.615850e-47 |
Msa0380680 | Msa1181090 | 0.809786 | 1.592897e-50 | -8.615850e-47 |
Msa0380680 | Msa1205910 | 0.804070 | 2.576575e-49 | -8.615850e-47 |
Msa0380680 | Msa1214960 | 0.808223 | 3.442528e-50 | -8.615850e-47 |
Msa0380680 | Msa1225850 | 0.816940 | 4.268397e-52 | -8.615850e-47 |
Msa0380680 | Msa1233630 | 0.800738 | 1.252109e-48 | -8.615850e-47 |
Msa0380680 | Msa1269050 | 0.816825 | 4.528761e-52 | -8.615850e-47 |
Msa0380680 | Msa1296870 | 0.803762 | 2.986482e-49 | -8.615850e-47 |
Msa0380680 | Msa1300590 | 0.803392 | 3.563837e-49 | -8.615850e-47 |
Msa0380680 | Msa1300610 | 0.822661 | 2.102121e-53 | -8.615850e-47 |
Msa0380680 | Msa1313840 | 0.802151 | 6.427655e-49 | -8.615850e-47 |
Msa0380680 | Msa1323030 | 0.813778 | 2.154174e-51 | -8.615850e-47 |
Msa0380680 | Msa1323080 | 0.808141 | 3.583761e-50 | -8.615850e-47 |
Msa0380680 | Msa1323120 | 0.864382 | 1.266312e-64 | -8.615850e-47 |
Msa0380680 | Msa1329740 | 0.809176 | 2.153567e-50 | -8.615850e-47 |
Msa0380680 | Msa1343590 | 0.802722 | 4.903108e-49 | -8.615850e-47 |
Msa0380680 | Msa1355340 | 0.818374 | 2.027168e-52 | -8.615850e-47 |
Msa0380680 | Msa1357860 | 0.815272 | 1.006605e-51 | -8.615850e-47 |
Msa0380680 | Msa1366480 | 0.802959 | 4.379701e-49 | -8.615850e-47 |
Msa0380680 | Msa1368490 | 0.823575 | 1.286490e-53 | -8.615850e-47 |
Msa0380680 | Msa1373560 | 0.816181 | 6.313633e-52 | -8.615850e-47 |
Msa0380680 | Msa1376070 | 0.823378 | 1.430244e-53 | -8.615850e-47 |
Msa0380680 | Msa1377460 | 0.808341 | 3.247729e-50 | -8.615850e-47 |
Msa0380680 | Msa1377520 | 0.810903 | 9.145694e-51 | -8.615850e-47 |
Msa0380680 | Msa1407670 | 0.839919 | 1.187912e-57 | -8.615850e-47 |
Msa0380680 | Msa1419910 | 0.801170 | 1.021422e-48 | -8.615850e-47 |
Msa0380680 | Msa1445900 | 0.830045 | 3.662325e-55 | -8.615850e-47 |
Msa0380680 | Msa1449770 | 0.841471 | 4.657749e-58 | -8.615850e-47 |
Msa0380680 | Msa1455760 | 0.806563 | 7.741083e-50 | -8.615850e-47 |
Msa0380680 | Msa1458270 | 0.802452 | 5.573013e-49 | -8.615850e-47 |
Msa0380680 | Msa1459610 | 0.824137 | 9.497017e-54 | -8.615850e-47 |
Msa0261400 | Msa0380680 | 0.804041 | 2.613152e-49 | -8.615850e-47 |
Msa0272210 | Msa0380680 | 0.832558 | 8.828143e-56 | -8.615850e-47 |
Msa0272230 | Msa0380680 | 0.824419 | 8.155253e-54 | -8.615850e-47 |
Msa0277520 | Msa0380680 | 0.818435 | 1.962806e-52 | -8.615850e-47 |
Msa0281190 | Msa0380680 | 0.813366 | 2.655147e-51 | -8.615850e-47 |
Msa0288540 | Msa0380680 | 0.823083 | 1.676447e-53 | -8.615850e-47 |
Msa0299030 | Msa0380680 | 0.801573 | 8.446923e-49 | -8.615850e-47 |
Msa0326770 | Msa0380680 | 0.811922 | 5.493601e-51 | -8.615850e-47 |
Msa0328100 | Msa0380680 | 0.811959 | 5.393678e-51 | -8.615850e-47 |
Msa0349930 | Msa0380680 | 0.801542 | 8.572434e-49 | -8.615850e-47 |
Msa0354670 | Msa0380680 | 0.804321 | 2.285218e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0380680 | MtrunA17_Chr3g0134271 | 96.273 | 322 | 12 | 0 | 1 | 322 | 1 | 322 | 0.0 | 641 |
Msa0380680 | MtrunA17_Chr1g0198911 | 86.957 | 322 | 40 | 1 | 1 | 322 | 1 | 320 | 0.0 | 580 |
Msa0380680 | MtrunA17_Chr1g0152931 | 86.154 | 325 | 42 | 2 | 1 | 322 | 1 | 325 | 0.0 | 575 |
Msa0380680 | MtrunA17_Chr4g0061721 | 59.006 | 322 | 124 | 2 | 3 | 321 | 2 | 318 | 2.84e-131 | 377 |
Msa0380680 | MtrunA17_Chr4g0061731 | 57.764 | 322 | 129 | 3 | 3 | 321 | 2 | 319 | 3.49e-128 | 369 |
Msa0380680 | MtrunA17_Chr8g0349621 | 28.664 | 307 | 172 | 7 | 6 | 277 | 23 | 317 | 1.31e-25 | 105 |
Msa0380680 | MtrunA17_Chr3g0079001 | 28.571 | 252 | 157 | 6 | 67 | 297 | 77 | 326 | 5.46e-17 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0380680 | AT3G16150.1 | 83.692 | 325 | 50 | 1 | 1 | 322 | 1 | 325 | 0.0 | 564 |
Msa0380680 | AT5G08100.1 | 57.716 | 324 | 122 | 3 | 1 | 321 | 1 | 312 | 1.06e-127 | 367 |
Msa0380680 | AT5G08100.2 | 56.967 | 244 | 91 | 2 | 80 | 321 | 1 | 232 | 4.47e-94 | 279 |
Msa0380680 | AT4G00590.1 | 27.244 | 312 | 186 | 7 | 6 | 282 | 15 | 320 | 3.29e-20 | 90.9 |
Msa0380680 | AT5G61540.1 | 28.571 | 266 | 151 | 9 | 67 | 300 | 80 | 338 | 1.42e-17 | 82.8 |
Msa0380680 | AT4G00590.2 | 27.152 | 302 | 184 | 8 | 6 | 282 | 15 | 305 | 7.41e-17 | 80.9 |
Msa0380680 | AT5G61540.3 | 28.750 | 240 | 132 | 9 | 93 | 300 | 4 | 236 | 1.01e-14 | 73.2 |
Msa0380680 | AT5G61540.2 | 28.750 | 240 | 132 | 9 | 93 | 300 | 4 | 236 | 1.01e-14 | 73.2 |
Find 91 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTCATGGAGGTTGGAATT+TGG | 0.172718 | 3_1:+82534721 | Msa0380680:CDS |
GTTCATGGAGGTTGGAATTT+GGG | 0.266618 | 3_1:+82534722 | Msa0380680:CDS |
TCAATTGTAATGGAATGTTT+AGG | 0.266625 | 3_1:+82534679 | Msa0380680:CDS |
TCTTATTGCTGTGTCTAATA+AGG | 0.277779 | 3_1:+82534638 | Msa0380680:CDS |
CAATTGTAATGGAATGTTTA+GGG | 0.287602 | 3_1:+82534680 | Msa0380680:CDS |
AATAAGGGTGAAGTGGCTTA+TGG | 0.294879 | 3_1:+82534654 | Msa0380680:CDS |
CGTCTTGATGAAGGGTTTGC+TGG | 0.320904 | 3_1:+82534615 | Msa0380680:CDS |
GGTTGGGCTATTGCTGTTCA+TGG | 0.339677 | 3_1:+82533364 | Msa0380680:CDS |
TGTGCTGCTGCAACCTCAAC+TGG | 0.368919 | 3_1:+82534390 | Msa0380680:CDS |
TGACGGTGTGTTGGAAGATT+AGG | 0.377061 | 3_1:-82533403 | None:intergenic |
AAAGGAAGCTAATACAATAT+TGG | 0.379155 | 3_1:+82534132 | Msa0380680:CDS |
TTTCAGCATACCAACATTAT+CGG | 0.395803 | 3_1:-82534104 | None:intergenic |
AGGGGATGTGCAACTGAGAA+TGG | 0.403815 | 3_1:+82534699 | Msa0380680:CDS |
ATAAGGGTGAAGTGGCTTAT+GGG | 0.407004 | 3_1:+82534655 | Msa0380680:CDS |
ATTGCTGTTCATGGCGGCGC+TGG | 0.414973 | 3_1:+82533373 | Msa0380680:CDS |
AGCAAAAGGAACGGTGGAAA+TGG | 0.416209 | 3_1:+82533799 | Msa0380680:CDS |
ACATTCGGTAAGAAGCTGTT+TGG | 0.418583 | 3_1:-82533434 | None:intergenic |
GCTTATGGGTTCAATTGTAA+TGG | 0.420402 | 3_1:+82534669 | Msa0380680:CDS |
CTTACCGAATGTCTCAATCT+TGG | 0.425909 | 3_1:+82533445 | Msa0380680:CDS |
CATTCTTACCTCGCCTTCTC+CGG | 0.431764 | 3_1:+82533929 | Msa0380680:CDS |
AGAAGATGTGGTGCTATATC+TGG | 0.431819 | 3_1:+82533848 | Msa0380680:CDS |
CTTATTGCTGTGTCTAATAA+GGG | 0.432612 | 3_1:+82534639 | Msa0380680:CDS |
ACAAGACGAGCAAGAGAGAT+TGG | 0.433669 | 3_1:-82533890 | None:intergenic |
AACAAAATGAGTGGTCGAAT+TGG | 0.448923 | 3_1:+82534423 | Msa0380680:CDS |
TTCAGCATACCAACATTATC+GGG | 0.458771 | 3_1:-82534103 | None:intergenic |
GGATCTGCTCTGACAGCAAA+AGG | 0.463031 | 3_1:+82533785 | Msa0380680:CDS |
ATTAAGCATCGTCTTGATGA+AGG | 0.463221 | 3_1:+82534606 | Msa0380680:CDS |
AGAAGAATTTGCTAGGGAAC+AGG | 0.465537 | 3_1:+82533955 | Msa0380680:CDS |
GACGTCGAGTGCGGAAGCAT+TGG | 0.472505 | 3_1:-82533485 | None:intergenic |
ATTGGTGATTCACCTCTCAT+AGG | 0.473172 | 3_1:+82534441 | Msa0380680:CDS |
TGCAACTGAGAATGGGTTCA+TGG | 0.477091 | 3_1:+82534707 | Msa0380680:CDS |
ACCACACATCCGACGGTCTC+CGG | 0.480495 | 3_1:-82534348 | None:intergenic |
TAATCTTCCAACACACCGTC+AGG | 0.481716 | 3_1:+82533405 | Msa0380680:CDS |
CTCTCTTGCTCGTCTTGTCA+TGG | 0.483008 | 3_1:+82533895 | Msa0380680:CDS |
ACGTGAAGTGGCTGCAGTTA+TGG | 0.491646 | 3_1:+82534542 | Msa0380680:CDS |
GTTCATCAGCCCTCCAGTTG+AGG | 0.494907 | 3_1:-82534403 | None:intergenic |
AAATTCTTCTGCACCGGAGA+AGG | 0.500532 | 3_1:-82533942 | None:intergenic |
GAGAATGGGTTCATGGAGGT+TGG | 0.502391 | 3_1:+82534714 | Msa0380680:CDS |
GATTCACCTCTCATAGGTGC+TGG | 0.502766 | 3_1:+82534447 | Msa0380680:CDS |
GATAGTCCAGTGAAAATGAA+TGG | 0.507847 | 3_1:+82534303 | Msa0380680:CDS |
CCTAGCAAATTCTTCTGCAC+CGG | 0.509592 | 3_1:-82533948 | None:intergenic |
GCTTCTTCCTGACGGTGTGT+TGG | 0.511337 | 3_1:-82533412 | None:intergenic |
GGGGATGTGCAACTGAGAAT+GGG | 0.515436 | 3_1:+82534700 | Msa0380680:CDS |
GGAAATGGAGGCTAGTATCA+TGG | 0.537266 | 3_1:+82533814 | Msa0380680:CDS |
GATACCAAGATTGAGACATT+CGG | 0.538052 | 3_1:-82533449 | None:intergenic |
CCGGTGCAGAAGAATTTGCT+AGG | 0.539891 | 3_1:+82533948 | Msa0380680:CDS |
GACCGTCGGATGTGTGGTGG+TGG | 0.541481 | 3_1:+82534353 | Msa0380680:CDS |
GTTATGGAGTACAAAGGCTA+TGG | 0.546040 | 3_1:+82534558 | Msa0380680:CDS |
GTGTGTGGAGTTTCATGCAC+TGG | 0.546331 | 3_1:+82534486 | Msa0380680:CDS |
CTGCTGCAACCTCAACTGGA+GGG | 0.550431 | 3_1:+82534394 | Msa0380680:CDS |
GCTGTTTGGCTTCTTCCTGA+CGG | 0.552502 | 3_1:-82533420 | None:intergenic |
TGGCACTCTTGCACGTGAAG+TGG | 0.556232 | 3_1:+82534530 | Msa0380680:CDS |
TTCATCACTCCCGATAATGT+TGG | 0.557667 | 3_1:+82534094 | Msa0380680:CDS |
AATTGTAATGGAATGTTTAG+GGG | 0.558475 | 3_1:+82534681 | Msa0380680:CDS |
GAGAAGGCGAGGTAAGAATG+AGG | 0.562126 | 3_1:-82533926 | None:intergenic |
GTTTGATTATCGAATTCCAA+CGG | 0.581762 | 3_1:+82534263 | Msa0380680:intron |
GCCGGAGACCGTCGGATGTG+TGG | 0.582295 | 3_1:+82534347 | Msa0380680:CDS |
GAAGGTGAAGCTATCATTCG+TGG | 0.583136 | 3_1:+82534510 | Msa0380680:CDS |
TGTTCATGGCGGCGCTGGTG+TGG | 0.585081 | 3_1:+82533378 | Msa0380680:CDS |
GCCGATGAGCATTTACGCGC+CGG | 0.592527 | 3_1:+82534329 | Msa0380680:CDS |
AGAAGGCGAGGTAAGAATGA+GGG | 0.593655 | 3_1:-82533925 | None:intergenic |
CCACGGCCAGAATTGAAAAG+TGG | 0.595287 | 3_1:-82533764 | None:intergenic |
CTATGGACTTCAACAAGCAG+TGG | 0.595577 | 3_1:+82534575 | Msa0380680:CDS |
TTAAGCATCGTCTTGATGAA+GGG | 0.596066 | 3_1:+82534607 | Msa0380680:CDS |
TTGCTGTCAGAGCAGATCCA+CGG | 0.605965 | 3_1:-82533781 | None:intergenic |
GCTGCTGCAACCTCAACTGG+AGG | 0.606206 | 3_1:+82534393 | Msa0380680:CDS |
TGCTCTGACAGCAAAAGGAA+CGG | 0.607232 | 3_1:+82533790 | Msa0380680:CDS |
GGAGTTTCATGCACTGGTGA+AGG | 0.610329 | 3_1:+82534492 | Msa0380680:CDS |
TTTCTAGGGCGTGGAGACTG+AGG | 0.612061 | 3_1:+82534060 | Msa0380680:intron |
GTCCACCACCACACATCCGA+CGG | 0.619811 | 3_1:-82534355 | None:intergenic |
TGTGTCTAATAAGGGTGAAG+TGG | 0.621047 | 3_1:+82534647 | Msa0380680:CDS |
AAAAGGAACGGTGGAAATGG+AGG | 0.622339 | 3_1:+82533802 | Msa0380680:CDS |
CGGTGCAGAAGAATTTGCTA+GGG | 0.622722 | 3_1:+82533949 | Msa0380680:CDS |
GAAGGCGAGGTAAGAATGAG+GGG | 0.630197 | 3_1:-82533924 | None:intergenic |
ATTTACGCGCCGGAGACCGT+CGG | 0.633728 | 3_1:+82534339 | Msa0380680:CDS |
ATGGAGGCTAGTATCATGGA+TGG | 0.635651 | 3_1:+82533818 | Msa0380680:CDS |
TCCGGCGCGTAAATGCTCAT+CGG | 0.640097 | 3_1:-82534330 | None:intergenic |
AAGTTCGACGACGTCGAGTG+CGG | 0.645430 | 3_1:-82533494 | None:intergenic |
CGAGTGCGGAAGCATTGGAT+CGG | 0.648150 | 3_1:-82533480 | None:intergenic |
TAAGTTCCAGCACCTATGAG+AGG | 0.650295 | 3_1:-82534453 | None:intergenic |
CTTCTGCACCGGAGAAGGCG+AGG | 0.656386 | 3_1:-82533937 | None:intergenic |
GGAGACCGTCGGATGTGTGG+TGG | 0.674288 | 3_1:+82534350 | Msa0380680:CDS |
GATGGTAACAAGAGAAGATG+TGG | 0.682088 | 3_1:+82533836 | Msa0380680:CDS |
TGGTATGCTGAAACTCGCAA+AGG | 0.682548 | 3_1:+82534114 | Msa0380680:CDS |
TGGGCTATTGCTGTTCATGG+CGG | 0.684758 | 3_1:+82533367 | Msa0380680:CDS |
ACTTATGCATGTGATGTGTG+TGG | 0.685580 | 3_1:+82534471 | Msa0380680:CDS |
GCTGCAGTTATGGAGTACAA+AGG | 0.689411 | 3_1:+82534552 | Msa0380680:CDS |
TCTGACAGCAAAAGGAACGG+TGG | 0.711989 | 3_1:+82533793 | Msa0380680:CDS |
TGTGTGGTGGTGGACAGTCA+AGG | 0.729603 | 3_1:+82534363 | Msa0380680:CDS |
GGGCTGATGAACAAAATGAG+TGG | 0.736737 | 3_1:+82534414 | Msa0380680:CDS |
AACTGAGAATGGGTTCATGG+AGG | 0.788867 | 3_1:+82534710 | Msa0380680:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATTATATTATTGTCATTA+TGG | - | chr3_1:82533651-82533670 | None:intergenic | 10.0% |
!! | AATATTTATAGATCAAAAAT+TGG | - | chr3_1:82534008-82534027 | None:intergenic | 10.0% |
!! | AAATTATATTATTGTCATTA+TGG | - | chr3_1:82533651-82533670 | None:intergenic | 10.0% |
!! | AATATTTATAGATCAAAAAT+TGG | - | chr3_1:82534008-82534027 | None:intergenic | 10.0% |
!! | GATTATGAATGATATAAATT+AGG | - | chr3_1:82533565-82533584 | None:intergenic | 15.0% |
!! | ATTTATATCATTCATAATCA+TGG | + | chr3_1:82533566-82533585 | Msa0380680:intron | 15.0% |
!! | TTTATATCATTCATAATCAT+GGG | + | chr3_1:82533567-82533586 | Msa0380680:intron | 15.0% |
!!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3_1:82534029-82534048 | Msa0380680:intron | 15.0% |
!! | GATTATGAATGATATAAATT+AGG | - | chr3_1:82533565-82533584 | None:intergenic | 15.0% |
!! | ATTTATATCATTCATAATCA+TGG | + | chr3_1:82533566-82533585 | Msa0380680:intron | 15.0% |
!! | TTTATATCATTCATAATCAT+GGG | + | chr3_1:82533567-82533586 | Msa0380680:intron | 15.0% |
!!! | GTTTTTAATCAAAAGATATT+TGG | + | chr3_1:82534029-82534048 | Msa0380680:intron | 15.0% |
!! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3_1:82533550-82533569 | None:intergenic | 20.0% |
!! | TGAATGATATAAATTAGGTT+AGG | - | chr3_1:82533560-82533579 | None:intergenic | 20.0% |
!!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3_1:82533704-82533723 | Msa0380680:intron | 20.0% |
!!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3_1:82533705-82533724 | Msa0380680:intron | 20.0% |
!! | TTATTAATGAATGTGTTTGA+TGG | + | chr3_1:82534229-82534248 | Msa0380680:intron | 20.0% |
!! | AAATTAGGTTAGGTTTATTA+CGG | - | chr3_1:82533550-82533569 | None:intergenic | 20.0% |
!! | TGAATGATATAAATTAGGTT+AGG | - | chr3_1:82533560-82533579 | None:intergenic | 20.0% |
!!! | TTTCTGTTTTTGTTGATTTT+AGG | + | chr3_1:82533704-82533723 | Msa0380680:intron | 20.0% |
!!! | TTCTGTTTTTGTTGATTTTA+GGG | + | chr3_1:82533705-82533724 | Msa0380680:intron | 20.0% |
!! | TTATTAATGAATGTGTTTGA+TGG | + | chr3_1:82534229-82534248 | Msa0380680:intron | 20.0% |
! | AACTATAGATTCGAAAATAC+CGG | - | chr3_1:82533680-82533699 | None:intergenic | 25.0% |
!!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3_1:82533721-82533740 | Msa0380680:intron | 25.0% |
!!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3_1:82534045-82534064 | Msa0380680:intron | 25.0% |
!!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3_1:82534046-82534065 | Msa0380680:intron | 25.0% |
! | AAAGGAAGCTAATACAATAT+TGG | + | chr3_1:82534132-82534151 | Msa0380680:CDS | 25.0% |
! | TCACTTGTGTAATTAAAATG+TGG | + | chr3_1:82534191-82534210 | Msa0380680:intron | 25.0% |
!! | TCAATTGTAATGGAATGTTT+AGG | + | chr3_1:82534679-82534698 | Msa0380680:CDS | 25.0% |
!! | CAATTGTAATGGAATGTTTA+GGG | + | chr3_1:82534680-82534699 | Msa0380680:CDS | 25.0% |
!! | AATTGTAATGGAATGTTTAG+GGG | + | chr3_1:82534681-82534700 | Msa0380680:CDS | 25.0% |
! | AACTATAGATTCGAAAATAC+CGG | - | chr3_1:82533680-82533699 | None:intergenic | 25.0% |
!!! | TTTAGGGTTCTTTTTTTGAT+AGG | + | chr3_1:82533721-82533740 | Msa0380680:intron | 25.0% |
!!! | TATTTGGTCATGTTTTTTCT+AGG | + | chr3_1:82534045-82534064 | Msa0380680:intron | 25.0% |
!!! | ATTTGGTCATGTTTTTTCTA+GGG | + | chr3_1:82534046-82534065 | Msa0380680:intron | 25.0% |
! | AAAGGAAGCTAATACAATAT+TGG | + | chr3_1:82534132-82534151 | Msa0380680:CDS | 25.0% |
! | TCACTTGTGTAATTAAAATG+TGG | + | chr3_1:82534191-82534210 | Msa0380680:intron | 25.0% |
!! | TCAATTGTAATGGAATGTTT+AGG | + | chr3_1:82534679-82534698 | Msa0380680:CDS | 25.0% |
!! | CAATTGTAATGGAATGTTTA+GGG | + | chr3_1:82534680-82534699 | Msa0380680:CDS | 25.0% |
!! | AATTGTAATGGAATGTTTAG+GGG | + | chr3_1:82534681-82534700 | Msa0380680:CDS | 25.0% |
TCATTCATAATCATGGGAAA+AGG | + | chr3_1:82533573-82533592 | Msa0380680:intron | 30.0% | |
! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3_1:82533882-82533901 | None:intergenic | 30.0% |
TTTCAGCATACCAACATTAT+CGG | - | chr3_1:82534107-82534126 | None:intergenic | 30.0% | |
TAATGAATGTGTTTGATGGA+CGG | + | chr3_1:82534233-82534252 | Msa0380680:intron | 30.0% | |
GTTTGATTATCGAATTCCAA+CGG | + | chr3_1:82534263-82534282 | Msa0380680:intron | 30.0% | |
TCTTATTGCTGTGTCTAATA+AGG | + | chr3_1:82534638-82534657 | Msa0380680:CDS | 30.0% | |
CTTATTGCTGTGTCTAATAA+GGG | + | chr3_1:82534639-82534658 | Msa0380680:CDS | 30.0% | |
TCATTCATAATCATGGGAAA+AGG | + | chr3_1:82533573-82533592 | Msa0380680:intron | 30.0% | |
! | AAGAGAGATTGGATTTTTCA+CGG | - | chr3_1:82533882-82533901 | None:intergenic | 30.0% |
TTTCAGCATACCAACATTAT+CGG | - | chr3_1:82534107-82534126 | None:intergenic | 30.0% | |
TAATGAATGTGTTTGATGGA+CGG | + | chr3_1:82534233-82534252 | Msa0380680:intron | 30.0% | |
GTTTGATTATCGAATTCCAA+CGG | + | chr3_1:82534263-82534282 | Msa0380680:intron | 30.0% | |
TCTTATTGCTGTGTCTAATA+AGG | + | chr3_1:82534638-82534657 | Msa0380680:CDS | 30.0% | |
CTTATTGCTGTGTCTAATAA+GGG | + | chr3_1:82534639-82534658 | Msa0380680:CDS | 30.0% | |
GATACCAAGATTGAGACATT+CGG | - | chr3_1:82533452-82533471 | None:intergenic | 35.0% | |
GTTTATTACGGAAGAGACAT+GGG | - | chr3_1:82533538-82533557 | None:intergenic | 35.0% | |
!! | ACAGATCCACTTTTCAATTC+TGG | + | chr3_1:82533758-82533777 | Msa0380680:CDS | 35.0% |
TTCAGCATACCAACATTATC+GGG | - | chr3_1:82534106-82534125 | None:intergenic | 35.0% | |
ATTCCAACGGAAAAATGTTC+TGG | + | chr3_1:82534276-82534295 | Msa0380680:CDS | 35.0% | |
GATAGTCCAGTGAAAATGAA+TGG | + | chr3_1:82534303-82534322 | Msa0380680:CDS | 35.0% | |
AACAAAATGAGTGGTCGAAT+TGG | + | chr3_1:82534423-82534442 | Msa0380680:CDS | 35.0% | |
! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3_1:82534606-82534625 | Msa0380680:CDS | 35.0% |
! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3_1:82534607-82534626 | Msa0380680:CDS | 35.0% |
GCTTATGGGTTCAATTGTAA+TGG | + | chr3_1:82534669-82534688 | Msa0380680:CDS | 35.0% | |
GATACCAAGATTGAGACATT+CGG | - | chr3_1:82533452-82533471 | None:intergenic | 35.0% | |
GTTTATTACGGAAGAGACAT+GGG | - | chr3_1:82533538-82533557 | None:intergenic | 35.0% | |
!! | ACAGATCCACTTTTCAATTC+TGG | + | chr3_1:82533758-82533777 | Msa0380680:CDS | 35.0% |
TTCAGCATACCAACATTATC+GGG | - | chr3_1:82534106-82534125 | None:intergenic | 35.0% | |
ATTCCAACGGAAAAATGTTC+TGG | + | chr3_1:82534276-82534295 | Msa0380680:CDS | 35.0% | |
GATAGTCCAGTGAAAATGAA+TGG | + | chr3_1:82534303-82534322 | Msa0380680:CDS | 35.0% | |
AACAAAATGAGTGGTCGAAT+TGG | + | chr3_1:82534423-82534442 | Msa0380680:CDS | 35.0% | |
! | ATTAAGCATCGTCTTGATGA+AGG | + | chr3_1:82534606-82534625 | Msa0380680:CDS | 35.0% |
! | TTAAGCATCGTCTTGATGAA+GGG | + | chr3_1:82534607-82534626 | Msa0380680:CDS | 35.0% |
GCTTATGGGTTCAATTGTAA+TGG | + | chr3_1:82534669-82534688 | Msa0380680:CDS | 35.0% | |
ACATTCGGTAAGAAGCTGTT+TGG | - | chr3_1:82533437-82533456 | None:intergenic | 40.0% | |
CTTACCGAATGTCTCAATCT+TGG | + | chr3_1:82533445-82533464 | Msa0380680:CDS | 40.0% | |
GGTTTATTACGGAAGAGACA+TGG | - | chr3_1:82533539-82533558 | None:intergenic | 40.0% | |
GATGGTAACAAGAGAAGATG+TGG | + | chr3_1:82533836-82533855 | Msa0380680:CDS | 40.0% | |
!! | AGAAGATGTGGTGCTATATC+TGG | + | chr3_1:82533848-82533867 | Msa0380680:CDS | 40.0% |
! | AGAGATTGGATTTTTCACGG+TGG | - | chr3_1:82533879-82533898 | None:intergenic | 40.0% |
!! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3_1:82533955-82533974 | Msa0380680:CDS | 40.0% |
TTCATCACTCCCGATAATGT+TGG | + | chr3_1:82534094-82534113 | Msa0380680:CDS | 40.0% | |
! | GTTCCAGAACATTTTTCCGT+TGG | - | chr3_1:82534282-82534301 | None:intergenic | 40.0% |
! | ATTGGTGATTCACCTCTCAT+AGG | + | chr3_1:82534441-82534460 | Msa0380680:CDS | 40.0% |
ACTTATGCATGTGATGTGTG+TGG | + | chr3_1:82534471-82534490 | Msa0380680:CDS | 40.0% | |
GTTATGGAGTACAAAGGCTA+TGG | + | chr3_1:82534558-82534577 | Msa0380680:CDS | 40.0% | |
TGTGTCTAATAAGGGTGAAG+TGG | + | chr3_1:82534647-82534666 | Msa0380680:CDS | 40.0% | |
AATAAGGGTGAAGTGGCTTA+TGG | + | chr3_1:82534654-82534673 | Msa0380680:CDS | 40.0% | |
ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3_1:82534655-82534674 | Msa0380680:CDS | 40.0% | |
GTTCATGGAGGTTGGAATTT+GGG | + | chr3_1:82534722-82534741 | Msa0380680:CDS | 40.0% | |
ACATTCGGTAAGAAGCTGTT+TGG | - | chr3_1:82533437-82533456 | None:intergenic | 40.0% | |
CTTACCGAATGTCTCAATCT+TGG | + | chr3_1:82533445-82533464 | Msa0380680:CDS | 40.0% | |
GGTTTATTACGGAAGAGACA+TGG | - | chr3_1:82533539-82533558 | None:intergenic | 40.0% | |
GATGGTAACAAGAGAAGATG+TGG | + | chr3_1:82533836-82533855 | Msa0380680:CDS | 40.0% | |
!! | AGAAGATGTGGTGCTATATC+TGG | + | chr3_1:82533848-82533867 | Msa0380680:CDS | 40.0% |
! | AGAGATTGGATTTTTCACGG+TGG | - | chr3_1:82533879-82533898 | None:intergenic | 40.0% |
!! | AGAAGAATTTGCTAGGGAAC+AGG | + | chr3_1:82533955-82533974 | Msa0380680:CDS | 40.0% |
TTCATCACTCCCGATAATGT+TGG | + | chr3_1:82534094-82534113 | Msa0380680:CDS | 40.0% | |
! | GTTCCAGAACATTTTTCCGT+TGG | - | chr3_1:82534282-82534301 | None:intergenic | 40.0% |
! | ATTGGTGATTCACCTCTCAT+AGG | + | chr3_1:82534441-82534460 | Msa0380680:CDS | 40.0% |
ACTTATGCATGTGATGTGTG+TGG | + | chr3_1:82534471-82534490 | Msa0380680:CDS | 40.0% | |
GTTATGGAGTACAAAGGCTA+TGG | + | chr3_1:82534558-82534577 | Msa0380680:CDS | 40.0% | |
TGTGTCTAATAAGGGTGAAG+TGG | + | chr3_1:82534647-82534666 | Msa0380680:CDS | 40.0% | |
AATAAGGGTGAAGTGGCTTA+TGG | + | chr3_1:82534654-82534673 | Msa0380680:CDS | 40.0% | |
ATAAGGGTGAAGTGGCTTAT+GGG | + | chr3_1:82534655-82534674 | Msa0380680:CDS | 40.0% | |
GTTCATGGAGGTTGGAATTT+GGG | + | chr3_1:82534722-82534741 | Msa0380680:CDS | 40.0% | |
TGACGGTGTGTTGGAAGATT+AGG | - | chr3_1:82533406-82533425 | None:intergenic | 45.0% | |
TAATCTTCCAACACACCGTC+AGG | + | chr3_1:82533405-82533424 | Msa0380680:CDS | 45.0% | |
TGCTCTGACAGCAAAAGGAA+CGG | + | chr3_1:82533790-82533809 | Msa0380680:CDS | 45.0% | |
AGCAAAAGGAACGGTGGAAA+TGG | + | chr3_1:82533799-82533818 | Msa0380680:CDS | 45.0% | |
AAAAGGAACGGTGGAAATGG+AGG | + | chr3_1:82533802-82533821 | Msa0380680:CDS | 45.0% | |
GGAAATGGAGGCTAGTATCA+TGG | + | chr3_1:82533814-82533833 | Msa0380680:CDS | 45.0% | |
ATGGAGGCTAGTATCATGGA+TGG | + | chr3_1:82533818-82533837 | Msa0380680:CDS | 45.0% | |
ACAAGACGAGCAAGAGAGAT+TGG | - | chr3_1:82533893-82533912 | None:intergenic | 45.0% | |
AGAAGGCGAGGTAAGAATGA+GGG | - | chr3_1:82533928-82533947 | None:intergenic | 45.0% | |
AAATTCTTCTGCACCGGAGA+AGG | - | chr3_1:82533945-82533964 | None:intergenic | 45.0% | |
CCTAGCAAATTCTTCTGCAC+CGG | - | chr3_1:82533951-82533970 | None:intergenic | 45.0% | |
!! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3_1:82533949-82533968 | Msa0380680:CDS | 45.0% |
!!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3_1:82534051-82534070 | Msa0380680:intron | 45.0% |
TGGTATGCTGAAACTCGCAA+AGG | + | chr3_1:82534114-82534133 | Msa0380680:CDS | 45.0% | |
! | TGAATGTGTTTGATGGACGG+TGG | + | chr3_1:82534236-82534255 | Msa0380680:intron | 45.0% |
! | GGCAGACCATTCATTTTCAC+TGG | - | chr3_1:82534312-82534331 | None:intergenic | 45.0% |
GGGCTGATGAACAAAATGAG+TGG | + | chr3_1:82534414-82534433 | Msa0380680:CDS | 45.0% | |
TAAGTTCCAGCACCTATGAG+AGG | - | chr3_1:82534456-82534475 | None:intergenic | 45.0% | |
GAAGGTGAAGCTATCATTCG+TGG | + | chr3_1:82534510-82534529 | Msa0380680:CDS | 45.0% | |
GCTGCAGTTATGGAGTACAA+AGG | + | chr3_1:82534552-82534571 | Msa0380680:CDS | 45.0% | |
CTATGGACTTCAACAAGCAG+TGG | + | chr3_1:82534575-82534594 | Msa0380680:CDS | 45.0% | |
! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3_1:82534707-82534726 | Msa0380680:CDS | 45.0% |
! | AACTGAGAATGGGTTCATGG+AGG | + | chr3_1:82534710-82534729 | Msa0380680:CDS | 45.0% |
GGTTCATGGAGGTTGGAATT+TGG | + | chr3_1:82534721-82534740 | Msa0380680:CDS | 45.0% | |
TGACGGTGTGTTGGAAGATT+AGG | - | chr3_1:82533406-82533425 | None:intergenic | 45.0% | |
TAATCTTCCAACACACCGTC+AGG | + | chr3_1:82533405-82533424 | Msa0380680:CDS | 45.0% | |
TGCTCTGACAGCAAAAGGAA+CGG | + | chr3_1:82533790-82533809 | Msa0380680:CDS | 45.0% | |
AGCAAAAGGAACGGTGGAAA+TGG | + | chr3_1:82533799-82533818 | Msa0380680:CDS | 45.0% | |
AAAAGGAACGGTGGAAATGG+AGG | + | chr3_1:82533802-82533821 | Msa0380680:CDS | 45.0% | |
GGAAATGGAGGCTAGTATCA+TGG | + | chr3_1:82533814-82533833 | Msa0380680:CDS | 45.0% | |
ATGGAGGCTAGTATCATGGA+TGG | + | chr3_1:82533818-82533837 | Msa0380680:CDS | 45.0% | |
ACAAGACGAGCAAGAGAGAT+TGG | - | chr3_1:82533893-82533912 | None:intergenic | 45.0% | |
AGAAGGCGAGGTAAGAATGA+GGG | - | chr3_1:82533928-82533947 | None:intergenic | 45.0% | |
AAATTCTTCTGCACCGGAGA+AGG | - | chr3_1:82533945-82533964 | None:intergenic | 45.0% | |
CCTAGCAAATTCTTCTGCAC+CGG | - | chr3_1:82533951-82533970 | None:intergenic | 45.0% | |
!! | CGGTGCAGAAGAATTTGCTA+GGG | + | chr3_1:82533949-82533968 | Msa0380680:CDS | 45.0% |
!!! | GTCATGTTTTTTCTAGGGCG+TGG | + | chr3_1:82534051-82534070 | Msa0380680:intron | 45.0% |
TGGTATGCTGAAACTCGCAA+AGG | + | chr3_1:82534114-82534133 | Msa0380680:CDS | 45.0% | |
! | TGAATGTGTTTGATGGACGG+TGG | + | chr3_1:82534236-82534255 | Msa0380680:intron | 45.0% |
! | GGCAGACCATTCATTTTCAC+TGG | - | chr3_1:82534312-82534331 | None:intergenic | 45.0% |
GGGCTGATGAACAAAATGAG+TGG | + | chr3_1:82534414-82534433 | Msa0380680:CDS | 45.0% | |
TAAGTTCCAGCACCTATGAG+AGG | - | chr3_1:82534456-82534475 | None:intergenic | 45.0% | |
GAAGGTGAAGCTATCATTCG+TGG | + | chr3_1:82534510-82534529 | Msa0380680:CDS | 45.0% | |
GCTGCAGTTATGGAGTACAA+AGG | + | chr3_1:82534552-82534571 | Msa0380680:CDS | 45.0% | |
CTATGGACTTCAACAAGCAG+TGG | + | chr3_1:82534575-82534594 | Msa0380680:CDS | 45.0% | |
! | TGCAACTGAGAATGGGTTCA+TGG | + | chr3_1:82534707-82534726 | Msa0380680:CDS | 45.0% |
! | AACTGAGAATGGGTTCATGG+AGG | + | chr3_1:82534710-82534729 | Msa0380680:CDS | 45.0% |
GGTTCATGGAGGTTGGAATT+TGG | + | chr3_1:82534721-82534740 | Msa0380680:CDS | 45.0% | |
!!! | AATAATATAATTTTTTAATC+CGG | + | chr3_1:82533658-82533677 | Msa0380680:intron | 5.0% |
!!! | AATAATATAATTTTTTAATC+CGG | + | chr3_1:82533658-82533677 | Msa0380680:intron | 5.0% |
! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3_1:82533364-82533383 | Msa0380680:CDS | 50.0% |
! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3_1:82533367-82533386 | Msa0380680:CDS | 50.0% |
! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3_1:82533423-82533442 | None:intergenic | 50.0% |
CCACGGCCAGAATTGAAAAG+TGG | - | chr3_1:82533767-82533786 | None:intergenic | 50.0% | |
!! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3_1:82533764-82533783 | Msa0380680:CDS | 50.0% |
TTGCTGTCAGAGCAGATCCA+CGG | - | chr3_1:82533784-82533803 | None:intergenic | 50.0% | |
GGATCTGCTCTGACAGCAAA+AGG | + | chr3_1:82533785-82533804 | Msa0380680:CDS | 50.0% | |
TCTGACAGCAAAAGGAACGG+TGG | + | chr3_1:82533793-82533812 | Msa0380680:CDS | 50.0% | |
CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3_1:82533895-82533914 | Msa0380680:CDS | 50.0% | |
GAAGGCGAGGTAAGAATGAG+GGG | - | chr3_1:82533927-82533946 | None:intergenic | 50.0% | |
GAGAAGGCGAGGTAAGAATG+AGG | - | chr3_1:82533929-82533948 | None:intergenic | 50.0% | |
CATTCTTACCTCGCCTTCTC+CGG | + | chr3_1:82533929-82533948 | Msa0380680:CDS | 50.0% | |
! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3_1:82533948-82533967 | Msa0380680:CDS | 50.0% |
GATTCACCTCTCATAGGTGC+TGG | + | chr3_1:82534447-82534466 | Msa0380680:CDS | 50.0% | |
GTGTGTGGAGTTTCATGCAC+TGG | + | chr3_1:82534486-82534505 | Msa0380680:CDS | 50.0% | |
! | GGAGTTTCATGCACTGGTGA+AGG | + | chr3_1:82534492-82534511 | Msa0380680:CDS | 50.0% |
ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3_1:82534542-82534561 | Msa0380680:CDS | 50.0% | |
CGTCTTGATGAAGGGTTTGC+TGG | + | chr3_1:82534615-82534634 | Msa0380680:CDS | 50.0% | |
AGGGGATGTGCAACTGAGAA+TGG | + | chr3_1:82534699-82534718 | Msa0380680:CDS | 50.0% | |
GGGGATGTGCAACTGAGAAT+GGG | + | chr3_1:82534700-82534719 | Msa0380680:CDS | 50.0% | |
! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3_1:82534714-82534733 | Msa0380680:CDS | 50.0% |
! | GGTTGGGCTATTGCTGTTCA+TGG | + | chr3_1:82533364-82533383 | Msa0380680:CDS | 50.0% |
! | TGGGCTATTGCTGTTCATGG+CGG | + | chr3_1:82533367-82533386 | Msa0380680:CDS | 50.0% |
! | GCTGTTTGGCTTCTTCCTGA+CGG | - | chr3_1:82533423-82533442 | None:intergenic | 50.0% |
CCACGGCCAGAATTGAAAAG+TGG | - | chr3_1:82533767-82533786 | None:intergenic | 50.0% | |
!! | CCACTTTTCAATTCTGGCCG+TGG | + | chr3_1:82533764-82533783 | Msa0380680:CDS | 50.0% |
TTGCTGTCAGAGCAGATCCA+CGG | - | chr3_1:82533784-82533803 | None:intergenic | 50.0% | |
GGATCTGCTCTGACAGCAAA+AGG | + | chr3_1:82533785-82533804 | Msa0380680:CDS | 50.0% | |
TCTGACAGCAAAAGGAACGG+TGG | + | chr3_1:82533793-82533812 | Msa0380680:CDS | 50.0% | |
CTCTCTTGCTCGTCTTGTCA+TGG | + | chr3_1:82533895-82533914 | Msa0380680:CDS | 50.0% | |
GAAGGCGAGGTAAGAATGAG+GGG | - | chr3_1:82533927-82533946 | None:intergenic | 50.0% | |
GAGAAGGCGAGGTAAGAATG+AGG | - | chr3_1:82533929-82533948 | None:intergenic | 50.0% | |
CATTCTTACCTCGCCTTCTC+CGG | + | chr3_1:82533929-82533948 | Msa0380680:CDS | 50.0% | |
! | CCGGTGCAGAAGAATTTGCT+AGG | + | chr3_1:82533948-82533967 | Msa0380680:CDS | 50.0% |
GATTCACCTCTCATAGGTGC+TGG | + | chr3_1:82534447-82534466 | Msa0380680:CDS | 50.0% | |
GTGTGTGGAGTTTCATGCAC+TGG | + | chr3_1:82534486-82534505 | Msa0380680:CDS | 50.0% | |
! | GGAGTTTCATGCACTGGTGA+AGG | + | chr3_1:82534492-82534511 | Msa0380680:CDS | 50.0% |
ACGTGAAGTGGCTGCAGTTA+TGG | + | chr3_1:82534542-82534561 | Msa0380680:CDS | 50.0% | |
CGTCTTGATGAAGGGTTTGC+TGG | + | chr3_1:82534615-82534634 | Msa0380680:CDS | 50.0% | |
AGGGGATGTGCAACTGAGAA+TGG | + | chr3_1:82534699-82534718 | Msa0380680:CDS | 50.0% | |
GGGGATGTGCAACTGAGAAT+GGG | + | chr3_1:82534700-82534719 | Msa0380680:CDS | 50.0% | |
! | GAGAATGGGTTCATGGAGGT+TGG | + | chr3_1:82534714-82534733 | Msa0380680:CDS | 50.0% |
GCTTCTTCCTGACGGTGTGT+TGG | - | chr3_1:82533415-82533434 | None:intergenic | 55.0% | |
!! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3_1:82533483-82533502 | None:intergenic | 55.0% |
AAGTTCGACGACGTCGAGTG+CGG | - | chr3_1:82533497-82533516 | None:intergenic | 55.0% | |
!! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3_1:82534060-82534079 | Msa0380680:intron | 55.0% |
TCCGGCGCGTAAATGCTCAT+CGG | - | chr3_1:82534333-82534352 | None:intergenic | 55.0% | |
!! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3_1:82534363-82534382 | Msa0380680:CDS | 55.0% |
! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3_1:82534390-82534409 | Msa0380680:CDS | 55.0% |
CTGCTGCAACCTCAACTGGA+GGG | + | chr3_1:82534394-82534413 | Msa0380680:CDS | 55.0% | |
GTTCATCAGCCCTCCAGTTG+AGG | - | chr3_1:82534406-82534425 | None:intergenic | 55.0% | |
TGGCACTCTTGCACGTGAAG+TGG | + | chr3_1:82534530-82534549 | Msa0380680:CDS | 55.0% | |
GCTTCTTCCTGACGGTGTGT+TGG | - | chr3_1:82533415-82533434 | None:intergenic | 55.0% | |
!! | CGAGTGCGGAAGCATTGGAT+CGG | - | chr3_1:82533483-82533502 | None:intergenic | 55.0% |
AAGTTCGACGACGTCGAGTG+CGG | - | chr3_1:82533497-82533516 | None:intergenic | 55.0% | |
!! | TTTCTAGGGCGTGGAGACTG+AGG | + | chr3_1:82534060-82534079 | Msa0380680:intron | 55.0% |
TCCGGCGCGTAAATGCTCAT+CGG | - | chr3_1:82534333-82534352 | None:intergenic | 55.0% | |
!! | TGTGTGGTGGTGGACAGTCA+AGG | + | chr3_1:82534363-82534382 | Msa0380680:CDS | 55.0% |
! | TGTGCTGCTGCAACCTCAAC+TGG | + | chr3_1:82534390-82534409 | Msa0380680:CDS | 55.0% |
CTGCTGCAACCTCAACTGGA+GGG | + | chr3_1:82534394-82534413 | Msa0380680:CDS | 55.0% | |
GTTCATCAGCCCTCCAGTTG+AGG | - | chr3_1:82534406-82534425 | None:intergenic | 55.0% | |
TGGCACTCTTGCACGTGAAG+TGG | + | chr3_1:82534530-82534549 | Msa0380680:CDS | 55.0% | |
! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3_1:82533373-82533392 | Msa0380680:CDS | 60.0% |
! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3_1:82533488-82533507 | None:intergenic | 60.0% |
GCCGATGAGCATTTACGCGC+CGG | + | chr3_1:82534329-82534348 | Msa0380680:CDS | 60.0% | |
ATTTACGCGCCGGAGACCGT+CGG | + | chr3_1:82534339-82534358 | Msa0380680:CDS | 60.0% | |
ACCACACATCCGACGGTCTC+CGG | - | chr3_1:82534351-82534370 | None:intergenic | 60.0% | |
GTCCACCACCACACATCCGA+CGG | - | chr3_1:82534358-82534377 | None:intergenic | 60.0% | |
GCTGCTGCAACCTCAACTGG+AGG | + | chr3_1:82534393-82534412 | Msa0380680:CDS | 60.0% | |
! | ATTGCTGTTCATGGCGGCGC+TGG | + | chr3_1:82533373-82533392 | Msa0380680:CDS | 60.0% |
! | GACGTCGAGTGCGGAAGCAT+TGG | - | chr3_1:82533488-82533507 | None:intergenic | 60.0% |
GCCGATGAGCATTTACGCGC+CGG | + | chr3_1:82534329-82534348 | Msa0380680:CDS | 60.0% | |
ATTTACGCGCCGGAGACCGT+CGG | + | chr3_1:82534339-82534358 | Msa0380680:CDS | 60.0% | |
ACCACACATCCGACGGTCTC+CGG | - | chr3_1:82534351-82534370 | None:intergenic | 60.0% | |
GTCCACCACCACACATCCGA+CGG | - | chr3_1:82534358-82534377 | None:intergenic | 60.0% | |
GCTGCTGCAACCTCAACTGG+AGG | + | chr3_1:82534393-82534412 | Msa0380680:CDS | 60.0% | |
!! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3_1:82533378-82533397 | Msa0380680:CDS | 65.0% |
CTTCTGCACCGGAGAAGGCG+AGG | - | chr3_1:82533940-82533959 | None:intergenic | 65.0% | |
GGAGACCGTCGGATGTGTGG+TGG | + | chr3_1:82534350-82534369 | Msa0380680:CDS | 65.0% | |
GACCGTCGGATGTGTGGTGG+TGG | + | chr3_1:82534353-82534372 | Msa0380680:CDS | 65.0% | |
!! | TGTTCATGGCGGCGCTGGTG+TGG | + | chr3_1:82533378-82533397 | Msa0380680:CDS | 65.0% |
CTTCTGCACCGGAGAAGGCG+AGG | - | chr3_1:82533940-82533959 | None:intergenic | 65.0% | |
GGAGACCGTCGGATGTGTGG+TGG | + | chr3_1:82534350-82534369 | Msa0380680:CDS | 65.0% | |
GACCGTCGGATGTGTGGTGG+TGG | + | chr3_1:82534353-82534372 | Msa0380680:CDS | 65.0% | |
GCCGGAGACCGTCGGATGTG+TGG | + | chr3_1:82534347-82534366 | Msa0380680:CDS | 70.0% | |
GCCGGAGACCGTCGGATGTG+TGG | + | chr3_1:82534347-82534366 | Msa0380680:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 82533358 | 82534749 | 82533358 | ID=Msa0380680;Name=Msa0380680 |
chr3_1 | mRNA | 82533358 | 82534749 | 82533358 | ID=Msa0380680-mRNA-1;Parent=Msa0380680;Name=Msa0380680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|4|0|322 |
chr3_1 | exon | 82533358 | 82533519 | 82533358 | ID=Msa0380680-mRNA-1:exon:21059;Parent=Msa0380680-mRNA-1 |
chr3_1 | exon | 82533743 | 82533976 | 82533743 | ID=Msa0380680-mRNA-1:exon:21060;Parent=Msa0380680-mRNA-1 |
chr3_1 | exon | 82534067 | 82534153 | 82534067 | ID=Msa0380680-mRNA-1:exon:21061;Parent=Msa0380680-mRNA-1 |
chr3_1 | exon | 82534264 | 82534749 | 82534264 | ID=Msa0380680-mRNA-1:exon:21062;Parent=Msa0380680-mRNA-1 |
chr3_1 | CDS | 82533358 | 82533519 | 82533358 | ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1 |
chr3_1 | CDS | 82533743 | 82533976 | 82533743 | ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1 |
chr3_1 | CDS | 82534067 | 82534153 | 82534067 | ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1 |
chr3_1 | CDS | 82534264 | 82534749 | 82534264 | ID=Msa0380680-mRNA-1:cds;Parent=Msa0380680-mRNA-1 |
Gene Sequence |
Protein sequence |